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-rw-r--r--java/src/hdf/hdf5lib/H5.java26
-rw-r--r--java/src/jni/h5aImp.c29
-rw-r--r--java/src/jni/h5dImp.c22
-rw-r--r--java/src/jni/h5fImp.c9
-rw-r--r--java/src/jni/h5tImp.c31
-rw-r--r--java/src/jni/h5tImp.h9
-rw-r--r--java/src/jni/h5util.c2
-rw-r--r--java/test/TestH5Dparams.java11
-rw-r--r--java/test/TestH5Tparams.java11
-rw-r--r--java/test/testfiles/JUnit-TestH5Dparams.txt4
-rw-r--r--java/test/testfiles/JUnit-TestH5Tparams.txt4
11 files changed, 131 insertions, 27 deletions
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index adb50f1..09fb223 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -2155,7 +2155,10 @@ public class H5 implements java.io.Serializable {
* - Error from the HDF-5 Library.
* @exception NullPointerException
* - buf is null.
+ *
+ * @deprecated As of HDF5 1.12.0 in favor of H5Treclaim
**/
+ @Deprecated
public synchronized static native int H5Dvlen_reclaim(long type_id, long space_id, long xfer_plist_id, byte[] buf)
throws HDF5LibraryException, NullPointerException;
@@ -3093,6 +3096,7 @@ public class H5 implements java.io.Serializable {
*
* @deprecated As of HDF5 1.10.5 in favor of H5Fis_accessible.
**/
+ @Deprecated
public synchronized static native boolean H5Fis_hdf5(String name) throws HDF5LibraryException, NullPointerException;
/**
@@ -10313,6 +10317,28 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Tpack(long type_id) throws HDF5LibraryException;
/**
+ * H5Treclaim reclaims buffer used for VL data.
+ *
+ * @param type_id
+ * Identifier of the datatype.
+ * @param space_id
+ * Identifier of the dataspace.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer with data to be reclaimed.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - buf is null.
+ **/
+ public synchronized static native int H5Treclaim(long type_id, long space_id, long xfer_plist_id, byte[] buf)
+ throws HDF5LibraryException, NullPointerException;
+
+ /**
* H5Tvlen_create creates a new variable-length (VL) dataype.
*
* @param base_id
diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c
index eaa356e..9f22665 100644
--- a/java/src/jni/h5aImp.c
+++ b/java/src/jni/h5aImp.c
@@ -94,11 +94,18 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aopen_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
+#ifndef H5_NO_DEPRECATED_SYMBOLS
const char *attrName = NULL;
+#endif
hid_t attr_id = H5I_INVALID_HID;
UNUSED(clss);
+#ifdef H5_NO_DEPRECATED_SYMBOLS
+ UNUSED(loc_id);
+ UNUSED(name);
+ H5_UNIMPLEMENTED(ENVONLY, "H5Aopen_name: not implemented");
+#else
if (NULL == name)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen_name: attribute name is null");
@@ -106,10 +113,13 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1name
if((attr_id = H5Aopen_name((hid_t)loc_id, attrName)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
+#endif
done:
+#ifndef H5_NO_DEPRECATED_SYMBOLS
if (attrName)
UNPIN_JAVA_STRING(ENVONLY, name, attrName);
+#endif
return (jlong)attr_id;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1name */
@@ -127,8 +137,14 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1idx
UNUSED(clss);
+#ifdef H5_NO_DEPRECATED_SYMBOLS
+ UNUSED(loc_id);
+ UNUSED(idx);
+ H5_UNIMPLEMENTED(ENVONLY, "H5Aopen_idx: not implemented");
+#else
if ((attr_id = H5Aopen_idx((hid_t) loc_id, (unsigned int) idx)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
+#endif
done:
return (jlong)attr_id;
@@ -1028,7 +1044,7 @@ H5AreadVL_str
/*
* When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings),
- * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * H5Treclaim() may crash on Windows because the Java GC will not be able to collect
* free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
* once done.
*/
@@ -1125,7 +1141,7 @@ done:
if (h5str.s)
h5str_free(&h5str);
if (readBuf) {
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, readBuf);
+ H5Treclaim(tid, sid, H5P_DEFAULT, readBuf);
HDfree(readBuf);
}
if (sid >= 0)
@@ -1313,7 +1329,7 @@ H5AwriteVL_asstr
/*
* When repeatedly writing a dataset with a large number of strs (e.g., 1,000,000 strings),
- * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * H5Treclaim() may crash on Windows because the Java GC will not be able to collect
* free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
* once done.
*/
@@ -1356,7 +1372,7 @@ done:
if (utf8)
UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
if (writeBuf) {
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, writeBuf);
+ H5Treclaim(tid, sid, H5P_DEFAULT, writeBuf);
HDfree(writeBuf);
}
if (sid >= 0)
@@ -1512,8 +1528,13 @@ Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs
UNUSED(clss);
+#ifdef H5_NO_DEPRECATED_SYMBOLS
+ UNUSED(loc_id);
+ H5_UNIMPLEMENTED(ENVONLY, "H5Aget_num_attrs: not implemented");
+#else
if ((retVal = H5Aget_num_attrs((hid_t)loc_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
+#endif
done:
return (jint)retVal;
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index 5500847..b395189 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -340,12 +340,21 @@ Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim
(JNIEnv *env, jclass clss, jlong type_id, jlong space_id,
jlong xfer_plist_id, jbyteArray buf)
{
+#ifndef H5_NO_DEPRECATED_SYMBOLS
jboolean vlenBufIsCopy;
jbyte *vlenBuf = NULL;
+#endif
herr_t status = FAIL;
UNUSED(clss);
+#ifdef H5_NO_DEPRECATED_SYMBOLS
+ UNUSED(type_id);
+ UNUSED(space_id);
+ UNUSED(xfer_plist_id);
+ UNUSED(buf);
+ H5_UNIMPLEMENTED(ENVONLY, "H5Dvlen_reclaim: not implemented");
+#else
if (NULL == buf)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dvlen_reclaim: buffer is NULL");
@@ -353,10 +362,13 @@ Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim
if ((status = H5Dvlen_reclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, vlenBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
+#endif
done:
+#ifndef H5_NO_DEPRECATED_SYMBOLS
if (vlenBuf)
UNPIN_BYTE_ARRAY(ENVONLY, buf, vlenBuf, (status < 0) ? JNI_ABORT : 0);
+#endif
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim */
@@ -1172,7 +1184,7 @@ H5DreadVL_str
/*
* When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings),
- * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * H5Treclaim() may crash on Windows because the Java GC will not be able to collect
* free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
* once done.
*/
@@ -1230,7 +1242,7 @@ H5DreadVL_asstr
if (mem_space == H5S_ALL) {
/*
- * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ * Retrieve a valid dataspace for H5Treclaim().
*/
if ((mem_space = H5Dget_space(did)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1285,7 +1297,7 @@ done:
if (h5str.s)
h5str_free(&h5str);
if (readBuf) {
- H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, readBuf);
+ H5Treclaim(tid, mem_space, xfer_plist_id, readBuf);
HDfree(readBuf);
}
if (close_mem_space)
@@ -1504,7 +1516,7 @@ H5DwriteVL_asstr
if (mem_space == H5S_ALL) {
/*
- * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ * Retrieve a valid dataspace for H5Treclaim().
*/
if ((mem_space = H5Dget_space(did)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1565,7 +1577,7 @@ done:
if (utf8)
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
if (writeBuf) {
- H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, writeBuf);
+ H5Treclaim(tid, mem_space, xfer_plist_id, writeBuf);
HDfree(writeBuf);
}
if (close_mem_space)
diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c
index 4fd6807..2eb3ad5 100644
--- a/java/src/jni/h5fImp.c
+++ b/java/src/jni/h5fImp.c
@@ -156,15 +156,17 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1hdf5
(JNIEnv *env, jclass clss, jstring name)
{
+#ifndef H5_NO_DEPRECATED_SYMBOLS
const char *fileName = NULL;
+#endif
htri_t bval = JNI_FALSE;
UNUSED(clss);
#ifdef H5_NO_DEPRECATED_SYMBOLS
+ UNUSED(name);
H5_UNIMPLEMENTED(ENVONLY, "H5Fis_hdf5: not implemented");
-#endif
-
+#else
if (NULL == name)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fis_hdf5: file name is NULL");
@@ -174,10 +176,13 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5
H5_LIBRARY_ERROR(ENVONLY);
bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+#endif
done:
+#ifndef H5_NO_DEPRECATED_SYMBOLS
if (fileName)
UNPIN_JAVA_STRING(ENVONLY, name, fileName);
+#endif
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Fis_1hdf5 */
diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c
index 460f12e..3302b7d 100644
--- a/java/src/jni/h5tImp.c
+++ b/java/src/jni/h5tImp.c
@@ -980,6 +980,37 @@ done:
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Treclaim
+ * Signature: (JJJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Treclaim
+ (JNIEnv *env, jclass clss, jlong type_id, jlong space_id,
+ jlong xfer_plist_id, jbyteArray buf)
+{
+ jboolean bufIsCopy;
+ jbyte *pinBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Treclaim: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, pinBuf, &bufIsCopy, "H5Treclaim: buffer not pinned");
+
+ if ((status = H5Treclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, pinBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (pinBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, pinBuf, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Treclaim */
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: _H5Tclose
* Signature: (J)I
*/
diff --git a/java/src/jni/h5tImp.h b/java/src/jni/h5tImp.h
index 374d992..a63969b 100644
--- a/java/src/jni/h5tImp.h
+++ b/java/src/jni/h5tImp.h
@@ -401,6 +401,15 @@ Java_hdf_hdf5lib_H5_H5Tpack
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Treclaim
+ * Signature: (JJJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Treclaim
+ (JNIEnv*, jclass, jlong, jlong, jlong, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: _H5Tclose
* Signature: (J)I
*/
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index af83caa..700f75f 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -2781,7 +2781,7 @@ h5str_dump_simple_dset
/* Reclaim any VL memory, if necessary */
if (vl_data) {
- if (H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0)
+ if (H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
diff --git a/java/test/TestH5Dparams.java b/java/test/TestH5Dparams.java
index a3618f2..621c000 100644
--- a/java/test/TestH5Dparams.java
+++ b/java/test/TestH5Dparams.java
@@ -113,17 +113,6 @@ public class TestH5Dparams {
H5.H5Dvlen_get_buf_size(-1, -1, -1);
}
- @Test(expected = HDF5LibraryException.class)
- public void testH5Dvlen_reclaim_invalid() throws Throwable {
- byte[] buf = new byte[2];
- H5.H5Dvlen_reclaim(-1, -1, -1, buf);
- }
-
- @Test(expected = NullPointerException.class)
- public void testH5Dvlen_reclaim_null() throws Throwable {
- H5.H5Dvlen_reclaim(-1, -1, -1, null);
- }
-
@Test(expected = IllegalArgumentException.class)
public void testH5Dget_storage_size_invalid() throws Throwable {
H5.H5Dget_storage_size(-1);
diff --git a/java/test/TestH5Tparams.java b/java/test/TestH5Tparams.java
index 53d3a37..8baccd1 100644
--- a/java/test/TestH5Tparams.java
+++ b/java/test/TestH5Tparams.java
@@ -274,6 +274,17 @@ public class TestH5Tparams {
public void testH5Tpack_invalid() throws Throwable {
H5.H5Tpack(-1);
}
+
+ @Test(expected = HDF5LibraryException.class)
+ public void testH5Treclaim_invalid() throws Throwable {
+ byte[] buf = new byte[2];
+ H5.H5Treclaim(-1, -1, -1, buf);
+ }
+
+ @Test(expected = NullPointerException.class)
+ public void testH5Treclaim_null() throws Throwable {
+ H5.H5Treclaim(-1, -1, -1, null);
+ }
@Test(expected = HDF5LibraryException.class)
public void testH5Tvlen_create_invalid() throws Throwable {
diff --git a/java/test/testfiles/JUnit-TestH5Dparams.txt b/java/test/testfiles/JUnit-TestH5Dparams.txt
index 9751be4..9acedd7 100644
--- a/java/test/testfiles/JUnit-TestH5Dparams.txt
+++ b/java/test/testfiles/JUnit-TestH5Dparams.txt
@@ -7,11 +7,9 @@ JUnit version 4.11
.testH5Dvlen_get_buf_size_invalid
.testH5Dcreate_null
.testH5Dset_extent_status_null
-.testH5Dvlen_reclaim_null
.testH5Dcreate_invalid
.testH5Dcreate_anon_invalid
.testH5Dset_extent_status_invalid
-.testH5Dvlen_reclaim_invalid
.testH5Dopen_invalid
.testH5Dclose_invalid
.testH5Dflush_invalid
@@ -22,5 +20,5 @@ JUnit version 4.11
Time: XXXX
-OK (20 tests)
+OK (18 tests)
diff --git a/java/test/testfiles/JUnit-TestH5Tparams.txt b/java/test/testfiles/JUnit-TestH5Tparams.txt
index e61f1e4..9f725ac 100644
--- a/java/test/testfiles/JUnit-TestH5Tparams.txt
+++ b/java/test/testfiles/JUnit-TestH5Tparams.txt
@@ -1,5 +1,6 @@
JUnit version 4.11
.testH5Tget_member_type_invalid
+.testH5Treclaim_invalid
.testH5Tenum_insert_null
.testH5Tget_offset_invalid
.testH5Tset_precision_invalid
@@ -68,9 +69,10 @@ JUnit version 4.11
.testH5Tget_member_index_null
.testH5Trefresh_invalid
.testH5Tset_sign_invalid
+.testH5Treclaim_null
.testH5Tenum_insert_name_null
Time: XXXX
-OK (70 tests)
+OK (72 tests)
generated by cgit v0.12 at 2024-11-05 10:05:02 (GMT)