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-rw-r--r--java/examples/datasets/CMakeLists.txt4
-rw-r--r--java/examples/datasets/runExample.sh.in2
-rw-r--r--java/examples/datatypes/CMakeLists.txt2
-rw-r--r--java/examples/datatypes/runExample.sh.in2
-rw-r--r--java/examples/groups/CMakeLists.txt11
-rw-r--r--java/examples/groups/runExample.sh.in2
-rw-r--r--java/examples/intro/CMakeLists.txt2
-rw-r--r--java/examples/intro/runExample.sh.in2
-rw-r--r--java/src/hdf/hdf5lib/H5.java130
-rw-r--r--java/src/hdf/hdf5lib/HDF5Constants.java6
-rw-r--r--java/src/jni/CMakeLists.txt1
-rw-r--r--java/src/jni/h5Constants.c4
-rw-r--r--java/src/jni/h5fImp.c77
-rw-r--r--java/src/jni/h5fImp.h36
-rw-r--r--java/src/jni/h5pImp.c124
-rw-r--r--java/src/jni/h5pImp.h37
-rw-r--r--java/test/CMakeLists.txt1
-rw-r--r--java/test/JUnit-interface.txt5
-rw-r--r--java/test/Makefile.am1
-rw-r--r--java/test/TestAll.java2
-rw-r--r--java/test/TestH5Fswmr.java118
-rw-r--r--java/test/TestH5Pfapl.java56
-rw-r--r--java/test/junit.sh.in33
23 files changed, 629 insertions, 29 deletions
diff --git a/java/examples/datasets/CMakeLists.txt b/java/examples/datasets/CMakeLists.txt
index 0ba2331..3a69359 100644
--- a/java/examples/datasets/CMakeLists.txt
+++ b/java/examples/datasets/CMakeLists.txt
@@ -108,8 +108,6 @@ if (BUILD_TESTING)
-E remove
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.data
- ${example}.out
- ${example}.out.err
)
else (${example} STREQUAL "H5Ex_D_External")
add_test (
@@ -117,8 +115,6 @@ if (BUILD_TESTING)
COMMAND ${CMAKE_COMMAND}
-E remove
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
- ${example}.out
- ${example}.out.err
)
endif (${example} STREQUAL "H5Ex_D_External")
if (NOT "${last_test}" STREQUAL "")
diff --git a/java/examples/datasets/runExample.sh.in b/java/examples/datasets/runExample.sh.in
index 83b06ec..440de33 100644
--- a/java/examples/datasets/runExample.sh.in
+++ b/java/examples/datasets/runExample.sh.in
@@ -38,7 +38,7 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
-BLDLIBDIR="./lib"
+BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
HDFTEST_HOME="$top_srcdir/java/examples/datasets"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
diff --git a/java/examples/datatypes/CMakeLists.txt b/java/examples/datatypes/CMakeLists.txt
index 5ab513c..3eae115 100644
--- a/java/examples/datatypes/CMakeLists.txt
+++ b/java/examples/datatypes/CMakeLists.txt
@@ -96,8 +96,6 @@ if (BUILD_TESTING)
COMMAND ${CMAKE_COMMAND}
-E remove
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
- ${example}.out
- ${example}.out.err
)
if (NOT "${last_test}" STREQUAL "")
set_tests_properties (JAVA_datatypes-${example}-clear-objects PROPERTIES DEPENDS ${last_test})
diff --git a/java/examples/datatypes/runExample.sh.in b/java/examples/datatypes/runExample.sh.in
index f80450e..1b02774 100644
--- a/java/examples/datatypes/runExample.sh.in
+++ b/java/examples/datatypes/runExample.sh.in
@@ -35,7 +35,7 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
-BLDLIBDIR="./lib"
+BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
HDFTEST_HOME="$top_srcdir/java/examples/datatypes"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
diff --git a/java/examples/groups/CMakeLists.txt b/java/examples/groups/CMakeLists.txt
index c23b7d3..2cab211 100644
--- a/java/examples/groups/CMakeLists.txt
+++ b/java/examples/groups/CMakeLists.txt
@@ -90,17 +90,6 @@ ENDMACRO (ADD_H5_TEST file)
if (BUILD_TESTING)
foreach (example ${HDF_JAVA_EXAMPLES})
- add_test (
- NAME JAVA_groups-${example}-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- ${example}.out
- ${example}.out.err
- )
- if (NOT "${last_test}" STREQUAL "")
- set_tests_properties (JAVA_groups-${example}-clear-objects PROPERTIES DEPENDS ${last_test})
- endif (NOT "${last_test}" STREQUAL "")
- set (last_test "JAVA_groups-${example}-clear-objects")
if (NOT ${example} STREQUAL "H5Ex_G_Iterate" AND NOT ${example} STREQUAL "H5Ex_G_Visit")
if (${example} STREQUAL "H5Ex_G_Compact")
add_test (
diff --git a/java/examples/groups/runExample.sh.in b/java/examples/groups/runExample.sh.in
index 7dddc6d..665b307 100644
--- a/java/examples/groups/runExample.sh.in
+++ b/java/examples/groups/runExample.sh.in
@@ -35,7 +35,7 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
-BLDLIBDIR="./lib"
+BLDLIBDIR="$top_builddir/hdf5/lib"
BLDREFDIR="./groups"
BLDDIR="."
HDFTEST_HOME="$top_srcdir/java/examples/groups"
diff --git a/java/examples/intro/CMakeLists.txt b/java/examples/intro/CMakeLists.txt
index 6b77382..2d0c218 100644
--- a/java/examples/intro/CMakeLists.txt
+++ b/java/examples/intro/CMakeLists.txt
@@ -98,8 +98,6 @@ if (BUILD_TESTING)
COMMAND ${CMAKE_COMMAND}
-E remove
${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
- ${example}.out
- ${example}.out.err
)
if (NOT "${last_test}" STREQUAL "")
set_tests_properties (JAVA_intro-${example}-clear-objects PROPERTIES DEPENDS ${last_test})
diff --git a/java/examples/intro/runExample.sh.in b/java/examples/intro/runExample.sh.in
index 60ea765..a8e65ff 100644
--- a/java/examples/intro/runExample.sh.in
+++ b/java/examples/intro/runExample.sh.in
@@ -35,7 +35,7 @@ nerrors=0
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
-BLDLIBDIR="./lib"
+BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
HDFTEST_HOME="$top_srcdir/java/examples/intro"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index 7614292..6b2af4b 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -2852,8 +2852,63 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native void H5Fclear_elink_file_cache(long file_id) throws HDF5LibraryException;
+ /**
+ * H5Fstart_swmr_write will activate SWMR writing mode for a file associated with file_id. This routine will
+ * prepare and ensure the file is safe for SWMR writing.
+ *
+ * @param file_id
+ * IN: Identifier of the target file.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native void H5Fstart_swmr_write(long file_id) throws HDF5LibraryException;
+
+ /**
+ * H5Fstart_mdc_logging starts logging metadata cache events if logging was previously enabled.
+ *
+ * @param file_id
+ * IN: Identifier of the target file.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native void H5Fstart_mdc_logging(long file_id) throws HDF5LibraryException;
+
+ /**
+ * H5Fstop_mdc_logging stops logging metadata cache events if logging was previously enabled and is currently ongoing.
+ *
+ * @param file_id
+ * IN: Identifier of the target file.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native void H5Fstop_mdc_logging(long file_id) throws HDF5LibraryException;
+
+ /**
+ * H5Fget_mdc_logging_status gets the current metadata cache logging status.
+ *
+ * @param file_id
+ * IN: Identifier of the target file.
+ *
+ * @param mdc_logging_status, the status
+ * mdc_logging_status[0] = is_enabled, whether logging is enabled
+ * mdc_logging_status[1] = is_currently_logging, whether events are currently being logged
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - mdc_logging_status is null.
+ **/
+ public synchronized static native void H5Fget_mdc_logging_status(long file_id, boolean[] mdc_logging_status)
+ throws HDF5LibraryException, NullPointerException;
+
+
+
// /////// unimplemented ////////
// ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len);
+ // herr_t H5Fget_metadata_read_retry_info(hid_t file_id, H5F_retry_info_t *info);
// ssize_t H5Fget_free_sections(hid_t file_id, H5F_mem_t type, size_t nsects, H5F_sect_info_t *sect_info/*out*/);
// /**
@@ -5672,6 +5727,79 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_elink_file_cache_size(long fapl_id, int efc_size)
throws HDF5LibraryException;
+ /**
+ * H5Pset_mdc_log_options sets metadata cache logging options.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param is_enabled
+ * IN: Whether logging is enabled.
+ * @param location
+ * IN: Location of log in UTF-8/ASCII (file path/name) (On Windows, this must be ASCII).
+ * @param start_on_access
+ * IN: Whether the logging begins as soon as the file is opened or created.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - location is null.
+ *
+ **/
+ public synchronized static native void H5Pset_mdc_log_options(long fapl_id, boolean is_enabled, String location, boolean start_on_access)
+ throws HDF5LibraryException, NullPointerException;
+
+ /**
+ * H5Pget_mdc_log_options gets metadata cache logging options.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param mdc_log_options, the options
+ * mdc_logging_options[0] = is_enabled, whether logging is enabled
+ * mdc_logging_options[1] = start_on_access, whether the logging begins as soon as the file is opened or created
+ *
+ * @return the location of log in UTF-8/ASCII (file path/name) (On Windows, this must be ASCII).
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native String H5Pget_mdc_log_options(long fapl_id, boolean[] mdc_log_options)
+ throws HDF5LibraryException;
+
+ /**
+ * H5Pget_metadata_read_attempts retrieves the number of read attempts that is set in the file access property list plist_id.
+ *
+ * @param plist_id
+ * IN: File access property list identifier
+ *
+ * @return The number of read attempts.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native long H5Pget_metadata_read_attempts(long plist_id) throws HDF5LibraryException;
+
+ /**
+ * H5Pset_metadata_read_attempts sets the number of reads that the library will try when reading checksummed
+ * metadata in an HDF5 file opened with SWMR access. When reading such metadata, the library will compare the
+ * checksum computed for the metadata just read with the checksum stored within the piece of checksum. When
+ * performing SWMR operations on a file, the checksum check might fail when the library reads data on a system
+ * that is not atomic. To remedy such situations, the library will repeatedly read the piece of metadata until
+ * the check passes or finally fails the read when the allowed number of attempts is reached.
+ *
+ * @param plist_id
+ * IN: File access property list identifier
+ * @param attempts
+ * IN: The number of read attempts which is a value greater than 0.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native void H5Pset_metadata_read_attempts(long plist_id, long attempts)
+ throws HDF5LibraryException;
+
// Dataset creation property list (DCPL) routines //
/**
@@ -6915,7 +7043,7 @@ public class H5 implements java.io.Serializable {
// File access property list (FAPL) routines //
// herr_t H5Pset_driver( hid_t plist_id, hid_t new_driver_id, const void *new_driver_info )
- // void *H5Pget_driver_info( hid_t plist_id )
+ // const void *H5Pget_driver_info( hid_t plist_id )
// herr_t H5Pget_multi_type ( hid_t fapl_id, H5FD_mem_t *type )
// herr_t H5Pset_multi_type ( hid_t fapl_id, H5FD_mem_t type )
// herr_t H5Pget_file_image(hid_t fapl_id, void **buf_ptr_ptr, size_t *buf_len_ptr);
diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java
index 8089544..acd3eb5 100644
--- a/java/src/hdf/hdf5lib/HDF5Constants.java
+++ b/java/src/hdf/hdf5lib/HDF5Constants.java
@@ -201,6 +201,8 @@ public class HDF5Constants {
public static final int H5F_ACC_RDWR = H5F_ACC_RDWR();
public static final int H5F_ACC_TRUNC = H5F_ACC_TRUNC();
public static final int H5F_ACC_DEFAULT = H5F_ACC_DEFAULT();
+ public static final int H5F_ACC_SWMR_READ = H5F_ACC_SWMR_READ();
+ public static final int H5F_ACC_SWMR_WRITE = H5F_ACC_SWMR_WRITE();
public static final int H5F_CLOSE_DEFAULT = H5F_CLOSE_DEFAULT();
public static final int H5F_CLOSE_SEMI = H5F_CLOSE_SEMI();
public static final int H5F_CLOSE_STRONG = H5F_CLOSE_STRONG();
@@ -984,6 +986,10 @@ public class HDF5Constants {
private static native final int H5F_ACC_DEFAULT();
+ private static native final int H5F_ACC_SWMR_READ();
+
+ private static native final int H5F_ACC_SWMR_WRITE();
+
private static native final int H5F_CLOSE_DEFAULT();
private static native final int H5F_CLOSE_SEMI();
diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt
index 2e4a821..9da31ee 100644
--- a/java/src/jni/CMakeLists.txt
+++ b/java/src/jni/CMakeLists.txt
@@ -84,5 +84,6 @@ if (HDF5_EXPORTED_TARGETS)
ARCHIVE DESTINATION ${HDF5_INSTALL_LIB_DIR} COMPONENT libraries
RUNTIME DESTINATION ${HDF5_INSTALL_LIB_DIR} COMPONENT libraries
FRAMEWORK DESTINATION ${HDF5_INSTALL_FWRK_DIR} COMPONENT libraries
+ INCLUDES DESTINATION include
)
endif (HDF5_EXPORTED_TARGETS)
diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c
index ffde130..976a224 100644
--- a/java/src/jni/h5Constants.c
+++ b/java/src/jni/h5Constants.c
@@ -363,6 +363,10 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1TRUNC(JNIEnv *env, jclass cls) { return H5F_ACC_TRUNC; }
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1DEFAULT(JNIEnv *env, jclass cls) { return H5F_ACC_DEFAULT; }
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1READ(JNIEnv *env, jclass cls) { return H5F_ACC_SWMR_READ; }
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1WRITE(JNIEnv *env, jclass cls) { return H5F_ACC_SWMR_WRITE; }
#pragma GCC diagnostic pop
JNIEXPORT jint JNICALL
diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c
index 5862ae7..058ba26 100644
--- a/java/src/jni/h5fImp.c
+++ b/java/src/jni/h5fImp.c
@@ -536,6 +536,83 @@ Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache
h5libraryError(env);
} /* end Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache */
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_swmr_write
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write
+ (JNIEnv *env, jclass cls, jlong file_id)
+{
+ if (H5Fstart_swmr_write((hid_t)file_id) < 0)
+ h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging
+ (JNIEnv *env, jclass cls, jlong file_id)
+{
+ if (H5Fstart_mdc_logging((hid_t)file_id) < 0)
+ h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstop_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging
+ (JNIEnv *env, jclass cls, jlong file_id)
+{
+ if (H5Fstop_mdc_logging((hid_t)file_id) < 0)
+ h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fget_mdc_logging_status
+ * Signature: (J[Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status
+ (JNIEnv *env, jclass cls, jlong file_id, jbooleanArray mdc_logging_status)
+{
+ hbool_t is_enabled;
+ hbool_t is_currently_logging;
+ jboolean *mdc_logging_status_ptr;
+ jint size;
+ jboolean isCopy;
+
+ if (mdc_logging_status == NULL) {
+ h5nullArgument(env, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
+ } /* end if */
+ else {
+ size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_logging_status);
+ if (size < 2) {
+ h5badArgument(env, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2.");
+ } /* end if */
+ else {
+ if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0) {
+ h5libraryError(env);
+ } /* end if */
+ else {
+ mdc_logging_status_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_logging_status, &isCopy);
+ mdc_logging_status_ptr[0] = (jboolean)is_enabled;
+ mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
+ ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_logging_status, mdc_logging_status_ptr, 0);
+ } /* end else */
+ } /* end else */
+ } /* end else */
+} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status */
+
+
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h
index a501b7e..7aff835 100644
--- a/java/src/jni/h5fImp.h
+++ b/java/src/jni/h5fImp.h
@@ -212,6 +212,42 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache
(JNIEnv *, jclass, jlong);
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_swmr_write
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstop_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fget_mdc_logging_status
+ * Signature: (J[Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status
+ (JNIEnv *, jclass, jlong, jbooleanArray);
+
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c
index 7c71da1..1368139 100644
--- a/java/src/jni/h5pImp.c
+++ b/java/src/jni/h5pImp.c
@@ -5007,6 +5007,96 @@ H5P_cls_close_cb
return (herr_t)status;
} /* end H5P_cls_close_cb */
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
+ (JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, jstring location, jboolean start_on_access)
+{
+ herr_t retVal = -1;
+ const char *lstr;
+
+ PIN_JAVA_STRING(location, lstr);
+
+ retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, lstr, (hbool_t)start_on_access);
+
+ UNPIN_JAVA_STRING(location, lstr);
+
+ if (retVal < 0) {
+ h5libraryError(env);
+ }
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
+ (JNIEnv *env, jclass clss, jlong fapl_id, jbooleanArray mdc_log_options)
+{
+ hbool_t is_enabled;
+ hbool_t start_on_access;
+ jboolean *mdc_log_options_ptr;
+ char *lname;
+ size_t location_size;
+ ssize_t status;
+ jstring str = NULL;
+ jint size;
+ jboolean isCopy;
+
+ if (mdc_log_options == NULL) {
+ h5nullArgument(env, "H5Fget_mdc_log_options: mdc_log_options is NULL");
+ } /* end if */
+ else {
+ size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_log_options);
+ if (size < 2) {
+ h5badArgument(env, "H5Fget_mdc_log_options: length of mdc_log_options < 2.");
+ } /* end if */
+ else {
+ /* get the length of the filename */
+ H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, NULL, &location_size, &start_on_access);
+ if (location_size < 0) {
+ h5badArgument(env, "H5Pget_mdc_log_options: location_size < 0");
+ }/* end if */
+ else if (location_size > 0) {
+ location_size++; /* add extra space for the null terminator */
+ lname = (char *)HDmalloc(sizeof(char) * location_size);
+ if (lname == NULL) {
+ h5outOfMemory(env, "H5Pget_mdc_log_options: malloc failed");
+ } /* end if */
+ else {
+ status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access);
+
+ if (status < 0) {
+ HDfree(lname);
+ h5libraryError(env);
+ } /* end if */
+ else {
+ str = ENVPTR->NewStringUTF(ENVPAR lname);
+ HDfree(lname);
+ if (str == NULL) {
+ h5JNIFatalError(env, "H5Pget_mdc_log_options: return string not allocated");
+ } /* end if */
+ else {
+ mdc_log_options_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_log_options, &isCopy);
+ mdc_log_options_ptr[0] = (jboolean)is_enabled;
+ mdc_log_options_ptr[1] = (jboolean)start_on_access;
+ ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_log_options, mdc_log_options_ptr, 0);
+ } /* end else */
+ } /* end else */
+ } /* end else */
+ } /* end else if*/
+ } /* end else */
+ } /* end else */
+
+ return (jstring)str;
+} /* end if */
+
static herr_t
H5D_append_cb
(hid_t dataset_id, hsize_t *cur_dims, void *op_data)
@@ -5542,6 +5632,40 @@ Java_hdf_hdf5lib_H5_H5Piterate
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Piterate */
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_metadata_read_attempts
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
+ (JNIEnv *env, jclass clss, jlong plist_id)
+{
+ unsigned attempts;
+ if (H5Pget_metadata_read_attempts((hid_t)plist_id, &attempts) < 0)
+ h5libraryError(env);
+
+ return (jlong) attempts;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_metadata_read_attempts
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
+ (JNIEnv *env, jclass clss, jlong plist_id, jlong attempts)
+{
+ if (attempts <= 0) {
+ h5badArgument(env, "H5Pset_metadata_read_attempts: attempts <= 0");
+ } /* end if */
+ else {
+ if(H5Pset_metadata_read_attempts((hid_t)plist_id, (unsigned)attempts) < 0)
+ h5libraryError(env);
+ } /* end else */
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts */
+
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/java/src/jni/h5pImp.h b/java/src/jni/h5pImp.h
index 2269624..927501e 100644
--- a/java/src/jni/h5pImp.h
+++ b/java/src/jni/h5pImp.h
@@ -1404,6 +1404,24 @@ Java_hdf_hdf5lib_H5_H5Pset_1file_1space
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jbooleanArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: H5Pset_append_flush
* Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
*/
@@ -1473,6 +1491,25 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Piterate
(JNIEnv*, jclass, jlong, jintArray, jobject, jobject);
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_metadata_read_attempts
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
+(JNIEnv *, jclass, jlong);
+
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_metadata_read_attempts
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
+(JNIEnv *, jclass, jlong, jlong);
+
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/test/CMakeLists.txt b/java/test/CMakeLists.txt
index 8cb41f7..b3a996b 100644
--- a/java/test/CMakeLists.txt
+++ b/java/test/CMakeLists.txt
@@ -16,6 +16,7 @@ set (HDF5_JAVA_TEST_SOURCES
TestH5Fparams.java
TestH5Fbasic.java
TestH5F.java
+ TestH5Fswmr.java
TestH5Gbasic.java
TestH5G.java
TestH5Giterate.java
diff --git a/java/test/JUnit-interface.txt b/java/test/JUnit-interface.txt
index cbd93e0..7fd80f8 100644
--- a/java/test/JUnit-interface.txt
+++ b/java/test/JUnit-interface.txt
@@ -93,6 +93,8 @@ JUnit version 4.11
.testH5Fget_intent_rdonly
.testH5Fget_create_plist
.testH5Fget_obj_count
+.testH5Fstart_swmr_write
+.testH5Fswmr_read_attempts
.testH5Gget_info_by_name_not_exists
.testH5Gget_info_by_idx_not_exists
.testH5Gget_info_by_name
@@ -496,6 +498,7 @@ JUnit version 4.11
.testH5P_fapl_family
.testH5P_chunk_cache
.testH5P_meta_block_size
+.testH5Fmdc_logging
.testH5Pget_elink_fapl
.testH5Pset_mdc_config
.testH5P_small_data_block_size
@@ -634,7 +637,7 @@ JUnit version 4.11
Time: XXXX
-OK (632 tests)
+OK (635 tests)
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
#000: (file name) line (number) in H5Fopen(): can't set access and transfer property lists
diff --git a/java/test/Makefile.am b/java/test/Makefile.am
index 9f29f1c..92ac12d 100644
--- a/java/test/Makefile.am
+++ b/java/test/Makefile.am
@@ -43,6 +43,7 @@ noinst_JAVA = \
TestH5Fparams.java \
TestH5Fbasic.java \
TestH5F.java \
+ TestH5Fswmr.java \
TestH5Gbasic.java \
TestH5G.java \
TestH5Giterate.java \
diff --git a/java/test/TestAll.java b/java/test/TestAll.java
index e3abe21..a4b44c3 100644
--- a/java/test/TestAll.java
+++ b/java/test/TestAll.java
@@ -23,7 +23,7 @@ import org.junit.runners.Suite;
TestH5Eregister.class,
TestH5Edefault.class,
TestH5E.class,
- TestH5Fparams.class, TestH5Fbasic.class, TestH5F.class,
+ TestH5Fparams.class, TestH5Fbasic.class, TestH5F.class, TestH5Fswmr.class,
TestH5Gbasic.class, TestH5G.class, TestH5Giterate.class,
TestH5Sbasic.class, TestH5S.class,
TestH5Tparams.class, TestH5Tbasic.class, TestH5T.class,
diff --git a/java/test/TestH5Fswmr.java b/java/test/TestH5Fswmr.java
new file mode 100644
index 0000000..b65ebf2
--- /dev/null
+++ b/java/test/TestH5Fswmr.java
@@ -0,0 +1,118 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+package test;
+
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertTrue;
+import static org.junit.Assert.fail;
+
+import java.io.File;
+
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
+
+import org.junit.After;
+import org.junit.Before;
+import org.junit.Rule;
+import org.junit.Test;
+import org.junit.rules.TestName;
+
+public class TestH5Fswmr {
+ @Rule public TestName testname = new TestName();
+ private static final String H5_FILE = "testswmr.h5";
+
+ long H5fid = -1;
+ long H5fapl = -1;
+ long H5fcpl = -1;
+
+ private final void _deleteFile(String filename) {
+ File file = new File(filename);
+
+ if (file.exists()) {
+ try {file.delete();} catch (SecurityException e) {}
+ }
+ }
+
+ @Before
+ public void createH5file()
+ throws HDF5LibraryException, NullPointerException {
+ assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ System.out.print(testname.getMethodName());
+
+ H5fapl = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
+ H5fcpl = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE);
+ H5.H5Pset_libver_bounds(H5fapl, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST);
+
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, H5fcpl, H5fapl);
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+ }
+
+ @After
+ public void deleteH5file() throws HDF5LibraryException {
+ if (H5fapl > 0) {
+ try {H5.H5Pclose(H5fapl);} catch (Exception ex) {}
+ H5fapl = -1;
+ }
+ if (H5fcpl > 0) {
+ try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {}
+ H5fcpl = -1;
+ }
+ if (H5fid > 0) {
+ try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ H5fid = -1;
+ }
+ _deleteFile(H5_FILE);
+ System.out.println();
+ }
+
+ @Test
+ public void testH5Fstart_swmr_write() {
+ try {
+ H5.H5Fstart_swmr_write(H5fid);
+ }
+ catch (Throwable err) {
+ fail("H5.H5Fstart_swmr_write: " + err);
+ }
+ }
+
+ @Test
+ public void testH5Fswmr_read_attempts() {
+ long read_attempts = 0;
+
+ try {
+ read_attempts = H5.H5Pget_metadata_read_attempts(H5fapl);
+ }
+ catch (Throwable err) {
+ fail("H5.testH5Fswmr_read_attempts: " + err);
+ }
+ assertTrue(read_attempts == 1);
+
+ try {
+ H5.H5Pset_metadata_read_attempts(H5fapl, 20);
+ }
+ catch (Throwable err) {
+ fail("H5.testH5Fswmr_read_attempts: " + err);
+ }
+ try {
+ read_attempts = H5.H5Pget_metadata_read_attempts(H5fapl);
+ }
+ catch (Throwable err) {
+ fail("H5.testH5Fswmr_read_attempts: " + err);
+ }
+ assertTrue(read_attempts == 20);
+ }
+}
diff --git a/java/test/TestH5Pfapl.java b/java/test/TestH5Pfapl.java
index 555afe0..e888e20 100644
--- a/java/test/TestH5Pfapl.java
+++ b/java/test/TestH5Pfapl.java
@@ -16,6 +16,7 @@
package test;
import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
@@ -1322,4 +1323,59 @@ public class TestH5Pfapl {
}
}
}
+
+ @Test
+ public void testH5Fmdc_logging() {
+ boolean[] mdc_logging_status = {false, false};
+ boolean[] mdc_log_options = {false, false};
+
+ try {
+ boolean is_enabled = true;
+ boolean start_on_access = false;
+ H5.H5Pset_mdc_log_options(fapl_id, is_enabled, H5_LOG_FILE, start_on_access);
+
+ String location = H5.H5Pget_mdc_log_options(fapl_id, mdc_log_options);
+ assertTrue("H5.H5Pget_mdc_log_options: is_enabled", mdc_log_options[0]);
+ assertFalse("H5.H5Pget_mdc_log_options: start_on_access_out", mdc_log_options[1]);
+
+ H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("mdc_log_option: " + err);
+ }
+ _createH5File(fapl_id);
+
+ try {
+ H5.H5Fget_mdc_logging_status(H5fid, mdc_logging_status);
+ }
+ catch (Throwable err) {
+ fail("H5.H5Fget_mdc_logging_status: " + err);
+ }
+ assertTrue("initial: is_enabled", mdc_logging_status[0]);
+ assertFalse("initial: is_currently_logging", mdc_logging_status[1]);
+
+ try {
+ H5.H5Fstart_mdc_logging(H5fid);
+ H5.H5Fget_mdc_logging_status(H5fid, mdc_logging_status);
+ }
+ catch (Throwable err) {
+ fail("start H5.H5Fget_mdc_logging_status: " + err);
+ }
+ assertTrue("start: is_enabled", mdc_logging_status[0]);
+ assertTrue("start: is_currently_logging", mdc_logging_status[1]);
+
+ try {
+ H5.H5Fstop_mdc_logging(H5fid);
+ H5.H5Fget_mdc_logging_status(H5fid, mdc_logging_status);
+ }
+ catch (Throwable err) {
+ fail("stop H5.H5Fget_mdc_logging_status: " + err);
+ }
+// assertFalse("stop: is_enabled", mdc_logging_status[0]);
+ assertFalse("stop: is_currently_logging", mdc_logging_status[1]);
+
+ deleteH5file();
+ _deleteLogFile();
+ }
}
diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in
index 5001c32..a9a71cb 100644
--- a/java/test/junit.sh.in
+++ b/java/test/junit.sh.in
@@ -39,7 +39,7 @@ myos=`uname -s`
# where the libs exist
HDFLIB_HOME="$top_srcdir/java/lib"
-BLDLIBDIR="$top_builddir/java/lib"
+BLDLIBDIR="$top_builddir/hdf5/lib"
BLDDIR="."
HDFTEST_HOME="$top_srcdir/java/test"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
@@ -55,12 +55,14 @@ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
# Comment '#' without space can be used.
# --------------------------------------------------------------------
LIST_LIBRARY_FILES="
+$top_builddir/src/.libs/libhdf5.*
+$top_builddir/java/src/jni/.libs/libhdf5_java.*
+"
+LIST_JAR_FILES="
$HDFLIB_HOME/hamcrest-core.jar
$HDFLIB_HOME/junit.jar
$HDFLIB_HOME/slf4j-api-1.7.5.jar
$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar
-$top_builddir/src/.libs/libhdf5.*
-$top_builddir/java/src/jni/.libs/libhdf5_java.*
$top_builddir/java/src/$JARFILE
"
LIST_DATA_FILES="
@@ -77,6 +79,7 @@ actual_ext="JUnit-interface.ext"
# copy files from source dirs to test dir
#
COPY_LIBFILES="$LIST_LIBRARY_FILES"
+COPY_JARFILES="$LIST_JAR_FILES"
COPY_LIBFILES_TO_BLDLIBDIR()
{
@@ -104,6 +107,30 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
+ # copy jar files. Used -f to make sure get a new copy
+ for tstfile in $COPY_JARFILES
+ do
+ # ignore '#' comment
+ echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+ RET=$?
+ if [ $RET -eq 1 ]; then
+ # skip cp if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $CP -f $tstfile $BLDLIBDIR
+ if [ $? -ne 0 ]; then
+ echo "Error: FAILED to copy $tstfile ."
+
+ # Comment out this to CREATE expected file
+ exit $EXIT_FAILURE
+ fi
+ fi
+ fi
+ done
}
CLEAN_LIBFILES_AND_BLDLIBDIR()