summaryrefslogtreecommitdiffstats
path: root/src/H5Dcompact.c
diff options
context:
space:
mode:
Diffstat (limited to 'src/H5Dcompact.c')
-rw-r--r--src/H5Dcompact.c60
1 files changed, 27 insertions, 33 deletions
diff --git a/src/H5Dcompact.c b/src/H5Dcompact.c
index 041d28f..809cdfc 100644
--- a/src/H5Dcompact.c
+++ b/src/H5Dcompact.c
@@ -67,8 +67,8 @@ static ssize_t H5D__compact_readvv(const H5D_io_info_t *io_info,
static ssize_t H5D__compact_writevv(const H5D_io_info_t *io_info,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_size_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_size_arr[], hsize_t mem_offset_arr[]);
-static herr_t H5D__compact_flush(H5D_t *dset, hid_t dxpl_id);
-static herr_t H5D__compact_dest(H5D_t *dset, hid_t dxpl_id);
+static herr_t H5D__compact_flush(H5D_t *dset);
+static herr_t H5D__compact_dest(H5D_t *dset);
/*********************/
@@ -80,6 +80,7 @@ const H5D_layout_ops_t H5D_LOPS_COMPACT[1] = {{
H5D__compact_construct,
NULL,
H5D__compact_is_space_alloc,
+ NULL,
H5D__compact_io_init,
H5D__contig_read,
H5D__contig_write,
@@ -117,7 +118,7 @@ H5FL_BLK_EXTERN(type_conv);
*-------------------------------------------------------------------------
*/
herr_t
-H5D__compact_fill(const H5D_t *dset, hid_t dxpl_id)
+H5D__compact_fill(const H5D_t *dset)
{
H5D_fill_buf_info_t fb_info; /* Dataset's fill buffer info */
hbool_t fb_info_init = FALSE; /* Whether the fill value buffer has been initialized */
@@ -126,7 +127,6 @@ H5D__compact_fill(const H5D_t *dset, hid_t dxpl_id)
FUNC_ENTER_PACKAGE
/* Check args */
- HDassert(TRUE == H5P_isa_class(dxpl_id, H5P_DATASET_XFER));
HDassert(dset && H5D_COMPACT == dset->shared->layout.type);
HDassert(dset->shared->layout.storage.u.compact.buf);
HDassert(dset->shared->type);
@@ -137,14 +137,14 @@ H5D__compact_fill(const H5D_t *dset, hid_t dxpl_id)
if(H5D__fill_init(&fb_info, dset->shared->layout.storage.u.compact.buf,
NULL, NULL, NULL, NULL,
&dset->shared->dcpl_cache.fill, dset->shared->type,
- dset->shared->type_id, (size_t)0, dset->shared->layout.storage.u.compact.size, dxpl_id) < 0)
+ dset->shared->type_id, (size_t)0, dset->shared->layout.storage.u.compact.size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize fill buffer info")
fb_info_init = TRUE;
/* Check for VL datatype & non-default fill value */
if(fb_info.has_vlen_fill_type)
/* Fill the buffer with VL datatype fill values */
- if(H5D__fill_refill_vl(&fb_info, fb_info.elmts_per_buf, dxpl_id) < 0)
+ if(H5D__fill_refill_vl(&fb_info, fb_info.elmts_per_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "can't refill fill value buffer")
done:
@@ -357,7 +357,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5D__compact_flush(H5D_t *dset, hid_t dxpl_id)
+H5D__compact_flush(H5D_t *dset)
{
herr_t ret_value = SUCCEED; /* Return value */
@@ -369,7 +369,7 @@ H5D__compact_flush(H5D_t *dset, hid_t dxpl_id)
/* Check if the buffered compact information is dirty */
if(dset->shared->layout.storage.u.compact.dirty) {
dset->shared->layout.storage.u.compact.dirty = FALSE;
- if(H5O_msg_write(&(dset->oloc), H5O_LAYOUT_ID, 0, H5O_UPDATE_TIME, &(dset->shared->layout), dxpl_id) < 0) {
+ if(H5O_msg_write(&(dset->oloc), H5O_LAYOUT_ID, 0, H5O_UPDATE_TIME, &(dset->shared->layout)) < 0) {
dset->shared->layout.storage.u.compact.dirty = TRUE;
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to update layout message")
}
@@ -393,7 +393,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5D__compact_dest(H5D_t *dset, hid_t H5_ATTR_UNUSED dxpl_id)
+H5D__compact_dest(H5D_t *dset)
{
FUNC_ENTER_STATIC_NOERR
@@ -421,8 +421,7 @@ H5D__compact_dest(H5D_t *dset, hid_t H5_ATTR_UNUSED dxpl_id)
*/
herr_t
H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_dst,
- H5O_storage_compact_t *storage_dst, H5T_t *dt_src, H5O_copy_t *cpy_info,
- hid_t dxpl_id)
+ H5O_storage_compact_t *storage_dst, H5T_t *dt_src, H5O_copy_t *cpy_info)
{
hid_t tid_src = -1; /* Datatype ID for source datatype */
hid_t tid_dst = -1; /* Datatype ID for destination datatype */
@@ -431,7 +430,7 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds
void *bkg = NULL; /* Temporary buffer for copying data */
void *reclaim_buf = NULL; /* Buffer for reclaiming data */
hid_t buf_sid = -1; /* ID for buffer dataspace */
- H5D_shared_t *shared_fo = cpy_info->shared_fo; /* Pointer to the shared struct for dataset object */
+ H5D_shared_t *shared_fo = (H5D_shared_t *)cpy_info->shared_fo; /* Pointer to the shared struct for dataset object */
H5O_storage_compact_t *storage_src = _storage_src; /* Pointer to storage_src */
herr_t ret_value = SUCCEED; /* Return value */
@@ -470,26 +469,26 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds
if(NULL == (dt_mem = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to copy")
if((tid_mem = H5I_register(H5I_DATATYPE, dt_mem, FALSE)) < 0) {
- H5T_close(dt_mem);
+ (void)H5T_close_real(dt_mem);
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, FAIL, "unable to register memory datatype")
} /* end if */
/* create variable-length datatype at the destinaton file */
if(NULL == (dt_dst = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to copy")
- if(H5T_set_loc(dt_dst, f_dst, H5T_LOC_DISK) < 0) {
- H5T_close(dt_dst);
+ if(H5T_set_loc(dt_dst, H5F_VOL_OBJ(f_dst), H5T_LOC_DISK) < 0) {
+ (void)H5T_close_real(dt_dst);
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "cannot mark datatype on disk")
} /* end if */
if((tid_dst = H5I_register(H5I_DATATYPE, dt_dst, FALSE)) < 0) {
- H5T_close(dt_dst);
+ (void)H5T_close_real(dt_dst);
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, FAIL, "unable to register destination file datatype")
} /* end if */
/* Set up the conversion functions */
- if(NULL == (tpath_src_mem = H5T_path_find(dt_src, dt_mem, NULL, NULL, dxpl_id, FALSE)))
+ if(NULL == (tpath_src_mem = H5T_path_find(dt_src, dt_mem)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to convert between src and mem datatypes")
- if(NULL == (tpath_mem_dst = H5T_path_find(dt_mem, dt_dst, NULL, NULL, dxpl_id, FALSE)))
+ if(NULL == (tpath_mem_dst = H5T_path_find(dt_mem, dt_dst)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to convert between mem and dst datatypes")
/* Determine largest datatype size */
@@ -530,43 +529,38 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds
if(NULL == (buf = H5FL_BLK_MALLOC(type_conv, buf_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
- HDmemcpy(buf, storage_src->buf, storage_src->size);
+ H5MM_memcpy(buf, storage_src->buf, storage_src->size);
/* allocate temporary bkg buff for data conversion */
if(NULL == (bkg = H5FL_BLK_MALLOC(type_conv, buf_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Convert from source file to memory */
- if(H5T_convert(tpath_src_mem, tid_src, tid_mem, nelmts, (size_t)0, (size_t)0, buf, bkg, dxpl_id) < 0)
+ if(H5T_convert(tpath_src_mem, tid_src, tid_mem, nelmts, (size_t)0, (size_t)0, buf, bkg) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "datatype conversion failed")
/* Copy into another buffer, to reclaim memory later */
- HDmemcpy(reclaim_buf, buf, buf_size);
+ H5MM_memcpy(reclaim_buf, buf, buf_size);
/* Set background buffer to all zeros */
HDmemset(bkg, 0, buf_size);
/* Convert from memory to destination file */
- if(H5T_convert(tpath_mem_dst, tid_mem, tid_dst, nelmts, (size_t)0, (size_t)0, buf, bkg, dxpl_id) < 0)
+ if(H5T_convert(tpath_mem_dst, tid_mem, tid_dst, nelmts, (size_t)0, (size_t)0, buf, bkg) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "datatype conversion failed")
- HDmemcpy(storage_dst->buf, buf, storage_dst->size);
+ H5MM_memcpy(storage_dst->buf, buf, storage_dst->size);
- if(H5D_vlen_reclaim(tid_mem, buf_space, dxpl_id, reclaim_buf) < 0)
+ if(H5T_reclaim(tid_mem, buf_space, reclaim_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_BADITER, FAIL, "unable to reclaim variable-length data")
} /* end if */
else if(H5T_get_class(dt_src, FALSE) == H5T_REFERENCE) {
if(f_src != f_dst) {
/* Check for expanding references */
if(cpy_info->expand_ref) {
- size_t ref_count;
-
- /* Determine # of reference elements to copy */
- ref_count = storage_src->size / H5T_get_size(dt_src);
-
/* Copy objects referenced in source buffer to destination file and set destination elements */
- if(H5O_copy_expand_ref(f_src, storage_src->buf, dxpl_id, f_dst,
- storage_dst->buf, ref_count, H5T_get_ref_type(dt_src), cpy_info) < 0)
+ if (H5O_copy_expand_ref(f_src, tid_src, dt_src, storage_src->buf,
+ storage_src->size, f_dst, storage_dst->buf, cpy_info) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy reference attribute")
} /* end if */
else
@@ -575,11 +569,11 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds
} /* end if */
else
/* Type conversion not necessary */
- HDmemcpy(storage_dst->buf, storage_src->buf, storage_src->size);
+ H5MM_memcpy(storage_dst->buf, storage_src->buf, storage_src->size);
} /* end if */
else
/* Type conversion not necessary */
- HDmemcpy(storage_dst->buf, storage_src->buf, storage_src->size);
+ H5MM_memcpy(storage_dst->buf, storage_src->buf, storage_src->size);
/* Mark destination buffer as dirty */
storage_dst->dirty = TRUE;
generated by cgit v0.12 at 2024-07-22 01:47:08 (GMT)