diff options
Diffstat (limited to 'src/H5Dcompact.c')
| -rw-r--r-- | src/H5Dcompact.c | 18 |
1 files changed, 12 insertions, 6 deletions
diff --git a/src/H5Dcompact.c b/src/H5Dcompact.c index c0c2a80..29401f8 100644 --- a/src/H5Dcompact.c +++ b/src/H5Dcompact.c @@ -80,6 +80,7 @@ const H5D_layout_ops_t H5D_LOPS_COMPACT[1] = {{ H5D__compact_construct, NULL, H5D__compact_is_space_alloc, + NULL, H5D__compact_io_init, H5D__contig_read, H5D__contig_write, @@ -528,7 +529,7 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds if(NULL == (buf = H5FL_BLK_MALLOC(type_conv, buf_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") - HDmemcpy(buf, storage_src->buf, storage_src->size); + H5MM_memcpy(buf, storage_src->buf, storage_src->size); /* allocate temporary bkg buff for data conversion */ if(NULL == (bkg = H5FL_BLK_MALLOC(type_conv, buf_size))) @@ -539,7 +540,7 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "datatype conversion failed") /* Copy into another buffer, to reclaim memory later */ - HDmemcpy(reclaim_buf, buf, buf_size); + H5MM_memcpy(reclaim_buf, buf, buf_size); /* Set background buffer to all zeros */ HDmemset(bkg, 0, buf_size); @@ -548,7 +549,7 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds if(H5T_convert(tpath_mem_dst, tid_mem, tid_dst, nelmts, (size_t)0, (size_t)0, buf, bkg) < 0) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "datatype conversion failed") - HDmemcpy(storage_dst->buf, buf, storage_dst->size); + H5MM_memcpy(storage_dst->buf, buf, storage_dst->size); if(H5D_vlen_reclaim(tid_mem, buf_space, reclaim_buf) < 0) HGOTO_ERROR(H5E_DATASET, H5E_BADITER, FAIL, "unable to reclaim variable-length data") @@ -558,9 +559,14 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds /* Check for expanding references */ if(cpy_info->expand_ref) { size_t ref_count; + size_t src_dt_size; /* Source datatype size */ + + /* Determine largest datatype size */ + if(0 == (src_dt_size = H5T_get_size(dt_src))) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to determine datatype size") /* Determine # of reference elements to copy */ - ref_count = storage_src->size / H5T_get_size(dt_src); + ref_count = storage_src->size / src_dt_size; /* Copy objects referenced in source buffer to destination file and set destination elements */ if(H5O_copy_expand_ref(f_src, storage_src->buf, f_dst, @@ -573,11 +579,11 @@ H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *_storage_src, H5F_t *f_ds } /* end if */ else /* Type conversion not necessary */ - HDmemcpy(storage_dst->buf, storage_src->buf, storage_src->size); + H5MM_memcpy(storage_dst->buf, storage_src->buf, storage_src->size); } /* end if */ else /* Type conversion not necessary */ - HDmemcpy(storage_dst->buf, storage_src->buf, storage_src->size); + H5MM_memcpy(storage_dst->buf, storage_src->buf, storage_src->size); /* Mark destination buffer as dirty */ storage_dst->dirty = TRUE; |