diff options
Diffstat (limited to 'src/H5Dfill.c')
| -rw-r--r-- | src/H5Dfill.c | 57 |
1 files changed, 26 insertions, 31 deletions
diff --git a/src/H5Dfill.c b/src/H5Dfill.c index 922ac98..94c7b1c 100644 --- a/src/H5Dfill.c +++ b/src/H5Dfill.c @@ -33,11 +33,13 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ +#include "H5CXprivate.h" /* API Contexts */ #include "H5Dpkg.h" /* Dataset functions */ #include "H5Eprivate.h" /* Error handling */ #include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* IDs */ -#include "H5VMprivate.h" /* Vector and array functions */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5VMprivate.h" /* Vector and array functions */ #include "H5WBprivate.h" /* Wrapped Buffers */ @@ -135,7 +137,7 @@ H5Dfill(const void *fill, hid_t fill_type_id, void *buf, hid_t buf_type_id, hid_ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "not a datatype") /* Fill the selection in the memory buffer */ - if(H5D__fill(fill, fill_type, buf, buf_type, space, H5AC_noio_dxpl_id) < 0) + if(H5D__fill(fill, fill_type, buf, buf_type, space) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "filling selection failed") done: @@ -173,7 +175,7 @@ done: --------------------------------------------------------------------------*/ herr_t H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, - const H5T_t *buf_type, const H5S_t *space, hid_t dxpl_id) + const H5T_t *buf_type, const H5S_t *space) { H5S_sel_iter_t *mem_iter = NULL; /* Memory selection iteration info */ hbool_t mem_iter_init = FALSE; /* Whether the memory selection iterator has been initialized */ @@ -230,7 +232,7 @@ H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, buf_size = MAX(src_type_size, dst_type_size); /* Set up type conversion function */ - if(NULL == (tpath = H5T_path_find(fill_type, buf_type, NULL, NULL, dxpl_id, FALSE))) + if(NULL == (tpath = H5T_path_find(fill_type, buf_type))) HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest datatype") /* Construct source & destination datatype IDs, if we will need them */ @@ -247,14 +249,11 @@ H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, * of the VL data. */ if(TRUE == H5T_detect_class(fill_type, H5T_VLEN, FALSE)) { - H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ - H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ - hssize_t nelmts; /* Number of data elements */ + hsize_t nelmts; /* Number of data elements */ /* Get the number of elements in the selection */ nelmts = H5S_GET_SELECT_NPOINTS(space); - HDassert(nelmts >= 0); - H5_CHECK_OVERFLOW(nelmts, hssize_t, size_t); + H5_CHECK_OVERFLOW(nelmts, hsize_t, size_t); /* Allocate a temporary buffer */ if(NULL == (tmp_buf = H5FL_BLK_MALLOC(type_conv, (size_t)nelmts * buf_size))) @@ -268,24 +267,20 @@ H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, H5VM_array_fill(tmp_buf, fill, src_type_size, (size_t)nelmts); /* Convert from file's fill value into memory form */ - if(H5T_convert(tpath, src_id, dst_id, (size_t)nelmts, (size_t)0, (size_t)0, tmp_buf, bkg_buf, dxpl_id) < 0) + if(H5T_convert(tpath, src_id, dst_id, (size_t)nelmts, (size_t)0, (size_t)0, tmp_buf, bkg_buf) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed") - /* Fill the DXPL cache values for later use */ - if(H5D__get_dxpl_cache(dxpl_id, &dxpl_cache) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache") - /* Allocate the chunk selection iterator */ if(NULL == (mem_iter = H5FL_MALLOC(H5S_sel_iter_t))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate memory selection iterator") /* Create a selection iterator for scattering the elements to memory buffer */ - if(H5S_select_iter_init(mem_iter, space, dst_type_size) < 0) + if(H5S_select_iter_init(mem_iter, space, dst_type_size, 0) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information") mem_iter_init = TRUE; /* Scatter the data into memory */ - if(H5D__scatter_mem(tmp_buf, space, mem_iter, (size_t)nelmts, dxpl_cache, buf/*out*/) < 0) + if(H5D__scatter_mem(tmp_buf, mem_iter, (size_t)nelmts, buf/*out*/) < 0) HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "scatter failed") } /* end if */ else { @@ -305,7 +300,7 @@ H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, HGOTO_ERROR(H5E_DATASET, H5E_NOSPACE, FAIL, "can't get actual buffer") /* Copy the user's data into the buffer for conversion */ - HDmemcpy(elem_ptr, fill, src_type_size); + H5MM_memcpy(elem_ptr, fill, src_type_size); /* If there's no VL type of data, do conversion first then fill the data into * the memory buffer. */ @@ -320,7 +315,7 @@ H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, } /* end if */ /* Perform datatype conversion */ - if(H5T_convert(tpath, src_id, dst_id, (size_t)1, (size_t)0, (size_t)0, elem_ptr, bkg_ptr, dxpl_id) < 0) + if(H5T_convert(tpath, src_id, dst_id, (size_t)1, (size_t)0, (size_t)0, elem_ptr, bkg_ptr) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed") /* Point at element buffer */ @@ -374,7 +369,7 @@ H5D__fill_init(H5D_fill_buf_info_t *fb_info, void *caller_fill_buf, H5MM_allocate_t alloc_func, void *alloc_info, H5MM_free_t free_func, void *free_info, const H5O_fill_t *fill, const H5T_t *dset_type, hid_t dset_type_id, - size_t total_nelmts, size_t max_buf_size, hid_t dxpl_id) + size_t total_nelmts, size_t max_buf_size) { herr_t ret_value = SUCCEED; /* Return value */ @@ -410,7 +405,7 @@ H5D__fill_init(H5D_fill_buf_info_t *fb_info, void *caller_fill_buf, /* If necessary, convert fill value datatypes (which copies VL components, etc.) */ if(fb_info->has_vlen_fill_type) { /* Create temporary datatype for conversion operation */ - if(NULL == (fb_info->mem_type = H5T_copy(dset_type, H5T_COPY_REOPEN))) + if(NULL == (fb_info->mem_type = H5T_copy(dset_type, H5T_COPY_TRANSIENT))) HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy file datatype") if((fb_info->mem_tid = H5I_register(H5I_DATATYPE, fb_info->mem_type, FALSE)) < 0) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, FAIL, "unable to register memory datatype") @@ -449,11 +444,11 @@ H5D__fill_init(H5D_fill_buf_info_t *fb_info, void *caller_fill_buf, } /* end else */ /* Get the datatype conversion path for this operation */ - if(NULL == (fb_info->fill_to_mem_tpath = H5T_path_find(dset_type, fb_info->mem_type, NULL, NULL, dxpl_id, FALSE))) + if(NULL == (fb_info->fill_to_mem_tpath = H5T_path_find(dset_type, fb_info->mem_type))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to convert between src and dst datatypes") /* Get the inverse datatype conversion path for this operation */ - if(NULL == (fb_info->mem_to_dset_tpath = H5T_path_find(fb_info->mem_type, dset_type, NULL, NULL, dxpl_id, FALSE))) + if(NULL == (fb_info->mem_to_dset_tpath = H5T_path_find(fb_info->mem_type, dset_type))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to convert between src and dst datatypes") /* Check if we need to allocate a background buffer */ @@ -569,8 +564,8 @@ done: *------------------------------------------------------------------------- */ herr_t -H5D__fill_refill_vl(H5D_fill_buf_info_t *fb_info, size_t nelmts, hid_t dxpl_id) -{ +H5D__fill_refill_vl(H5D_fill_buf_info_t *fb_info, size_t nelmts) +{ herr_t ret_value = SUCCEED; /* Return value */ void * buf = NULL; /* Temporary fill buffer */ @@ -582,14 +577,14 @@ H5D__fill_refill_vl(H5D_fill_buf_info_t *fb_info, size_t nelmts, hid_t dxpl_id) HDassert(fb_info->fill_buf); /* Make a copy of the (disk-based) fill value into the buffer */ - HDmemcpy(fb_info->fill_buf, fb_info->fill->buf, fb_info->file_elmt_size); + H5MM_memcpy(fb_info->fill_buf, fb_info->fill->buf, fb_info->file_elmt_size); /* Reset first element of background buffer, if necessary */ if(H5T_path_bkg(fb_info->fill_to_mem_tpath)) HDmemset(fb_info->bkg_buf, 0, fb_info->max_elmt_size); /* Type convert the dataset buffer, to copy any VL components */ - if(H5T_convert(fb_info->fill_to_mem_tpath, fb_info->file_tid, fb_info->mem_tid, (size_t)1, (size_t)0, (size_t)0, fb_info->fill_buf, fb_info->bkg_buf, dxpl_id) < 0) + if(H5T_convert(fb_info->fill_to_mem_tpath, fb_info->file_tid, fb_info->mem_tid, (size_t)1, (size_t)0, (size_t)0, fb_info->fill_buf, fb_info->bkg_buf) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed") /* Replicate the fill value into the cached buffer */ @@ -608,21 +603,21 @@ H5D__fill_refill_vl(H5D_fill_buf_info_t *fb_info, size_t nelmts, hid_t dxpl_id) if(!buf) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "memory allocation failed for temporary fill buffer") - HDmemcpy(buf, fb_info->fill_buf, fb_info->fill_buf_size); + H5MM_memcpy(buf, fb_info->fill_buf, fb_info->fill_buf_size); /* Type convert the dataset buffer, to copy any VL components */ - if(H5T_convert(fb_info->mem_to_dset_tpath, fb_info->mem_tid, fb_info->file_tid, nelmts, (size_t)0, (size_t)0, fb_info->fill_buf, fb_info->bkg_buf, dxpl_id) < 0) + if(H5T_convert(fb_info->mem_to_dset_tpath, fb_info->mem_tid, fb_info->file_tid, nelmts, (size_t)0, (size_t)0, fb_info->fill_buf, fb_info->bkg_buf) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed") done: if(buf) { /* Free dynamically allocated VL elements in fill buffer */ if(fb_info->fill->type) { - if(H5T_vlen_reclaim_elmt(buf, fb_info->fill->type, dxpl_id) < 0) + if(H5T_vlen_reclaim_elmt(buf, fb_info->fill->type) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't reclaim vlen element") } /* end if */ else { - if(H5T_vlen_reclaim_elmt(buf, fb_info->mem_type, dxpl_id) < 0) + if(H5T_vlen_reclaim_elmt(buf, fb_info->mem_type) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't reclaim vlen element") } /* end else */ @@ -703,7 +698,7 @@ H5D__fill_term(H5D_fill_buf_info_t *fb_info) if(fb_info->mem_tid > 0) H5I_dec_ref(fb_info->mem_tid); else if(fb_info->mem_type) - H5T_close(fb_info->mem_type); + (void)H5T_close_real(fb_info->mem_type); if(fb_info->bkg_buf) fb_info->bkg_buf = H5FL_BLK_FREE(type_conv, fb_info->bkg_buf); } /* end if */ |