diff options
Diffstat (limited to 'src/H5Dio.c')
-rw-r--r-- | src/H5Dio.c | 56 |
1 files changed, 28 insertions, 28 deletions
diff --git a/src/H5Dio.c b/src/H5Dio.c index d3df42a..189d9f1 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -700,7 +700,7 @@ H5D_write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, full_overwrite = (hsize_t)file_nelmts==nelmts ? TRUE : FALSE; /* Allocate storage */ - if(H5D_alloc_storage(dataset->oloc.file, dxpl_id, dataset, H5D_ALLOC_WRITE, TRUE, full_overwrite) < 0) + if(H5D_alloc_storage(dataset->oloc.file, dxpl_id, dataset, H5D_ALLOC_WRITE, full_overwrite) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize storage") } /* end if */ @@ -1412,7 +1412,7 @@ H5D_chunk_read(H5D_io_info_t *io_info, hsize_t nelmts, else {/* sequential or independent read */ #endif /* Get first node in chunk skip list */ - chunk_node = H5SL_first(fm.fsel); + chunk_node = H5SL_first(fm.sel_chunks); while(chunk_node) { H5D_chunk_info_t *chunk_info; /* chunk information */ @@ -1521,7 +1521,7 @@ H5D_chunk_read(H5D_io_info_t *io_info, hsize_t nelmts, /* Loop over all the chunks, performing I/O on each */ /* Get first node in chunk skip list */ - chunk_node=H5SL_first(fm.fsel); + chunk_node=H5SL_first(fm.sel_chunks); /* Iterate through chunks to be operated on */ while(chunk_node) { @@ -1810,7 +1810,7 @@ H5D_chunk_write(H5D_io_info_t *io_info, hsize_t nelmts, else {/* sequential or independent write */ #endif /* H5_HAVE_PARALLEL */ /* Get first node in chunk skip list */ - chunk_node=H5SL_first(fm.fsel); + chunk_node=H5SL_first(fm.sel_chunks); while(chunk_node) { H5D_chunk_info_t *chunk_info; /* Chunk information */ @@ -1928,7 +1928,7 @@ H5D_chunk_write(H5D_io_info_t *io_info, hsize_t nelmts, /* Loop over all the chunks, performing I/O on each */ /* Get first node in chunk skip list */ - chunk_node=H5SL_first(fm.fsel); + chunk_node=H5SL_first(fm.sel_chunks); /* Iterate through chunks to be operated on */ while(chunk_node) { @@ -2347,7 +2347,7 @@ H5D_create_chunk_map(H5D_chunk_map_t *fm, const H5D_io_info_t *io_info, H5D_t *dataset=io_info->dset; /* Local pointer to dataset info */ H5S_t *tmp_mspace = NULL; /* Temporary memory dataspace */ hssize_t old_offset[H5O_LAYOUT_NDIMS]; /* Old selection offset */ - hbool_t file_space_normalized = FALSE; /* File dataspace was normalized */ + htri_t file_space_normalized = FALSE; /* File dataspace was normalized */ hid_t f_tid = (-1); /* Temporary copy of file datatype for iteration */ hbool_t iter_init = FALSE; /* Selection iteration info has been initialized */ unsigned f_ndims; /* The number of dimensions of the file's dataspace */ @@ -2382,9 +2382,8 @@ H5D_create_chunk_map(H5D_chunk_map_t *fm, const H5D_io_info_t *io_info, * speed up hyperslab calculations by removing the extra checks and/or * additions involving the offset and the hyperslab selection -QAK) */ - if(H5S_hyper_normalize_offset((H5S_t *)file_space, old_offset) < 0) + if((file_space_normalized = H5S_hyper_normalize_offset((H5S_t *)file_space, old_offset)) < 0) HGOTO_ERROR(H5E_DATASET, H5E_BADSELECT, FAIL, "unable to normalize dataspace by offset") - file_space_normalized = TRUE; /* Decide the number of chunks in each dimension*/ for(u=0; u<f_ndims; u++) { @@ -2414,8 +2413,12 @@ H5D_create_chunk_map(H5D_chunk_map_t *fm, const H5D_io_info_t *io_info, /* Initialize skip list for chunk selections */ - if((fm->fsel = H5SL_create(H5SL_TYPE_HSIZE, 0.5, (size_t)H5D_DEFAULT_SKIPLIST_HEIGHT))==NULL) - HGOTO_ERROR(H5E_DATASET,H5E_CANTCREATE,FAIL,"can't create skip list for chunk selections") + if(NULL == dataset->shared->cache.chunk.sel_chunks) { + if(NULL == (dataset->shared->cache.chunk.sel_chunks = H5SL_create(H5SL_TYPE_HSIZE, 0.5, (size_t)H5D_DEFAULT_SKIPLIST_HEIGHT))) + HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, FAIL, "can't create skip list for chunk selections") + } /* end if */ + fm->sel_chunks = dataset->shared->cache.chunk.sel_chunks; + HDassert(fm->sel_chunks); /* Initialize "last chunk" information */ fm->last_index = (hsize_t)-1; @@ -2455,7 +2458,7 @@ H5D_create_chunk_map(H5D_chunk_map_t *fm, const H5D_io_info_t *io_info, HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create file chunk selections") /* Clean file chunks' hyperslab span "scratch" information */ - curr_node=H5SL_first(fm->fsel); + curr_node=H5SL_first(fm->sel_chunks); while(curr_node) { H5D_chunk_info_t *chunk_info; /* Pointer chunk information */ @@ -2530,7 +2533,7 @@ H5D_create_chunk_map(H5D_chunk_map_t *fm, const H5D_io_info_t *io_info, /* Clean up hyperslab stuff, if necessary */ if(fm->msel_type != H5S_SEL_POINTS) { /* Clean memory chunks' hyperslab span "scratch" information */ - curr_node=H5SL_first(fm->fsel); + curr_node=H5SL_first(fm->sel_chunks); while(curr_node) { H5D_chunk_info_t *chunk_info; /* Pointer chunk information */ @@ -2641,14 +2644,10 @@ H5D_destroy_chunk_map(const H5D_chunk_map_t *fm) FUNC_ENTER_NOAPI_NOINIT(H5D_destroy_chunk_map) - /* Free the chunk info skip list */ - if(fm->fsel) { - if(H5SL_count(fm->fsel)>0) - if(H5SL_iterate(fm->fsel,H5D_free_chunk_info,NULL) < 0) - HGOTO_ERROR(H5E_PLIST,H5E_CANTNEXT,FAIL,"can't iterate over chunks") - - H5SL_close(fm->fsel); - } /* end if */ + /* Release the nodes on the list of selected chunks */ + if(fm->sel_chunks) + if(H5SL_free(fm->sel_chunks, H5D_free_chunk_info, NULL) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTNEXT, FAIL, "can't iterate over chunks") /* Free the memory chunk dataspace template */ if(fm->mchunk_tmpl) @@ -2744,7 +2743,7 @@ H5D_create_chunk_map_single(H5D_chunk_map_t *fm, const H5D_io_info_t new_chunk_info->mspace_shared = 1; /* Insert the new chunk into the skip list */ - if(H5SL_insert(fm->fsel, new_chunk_info, &new_chunk_info->index) < 0) + if(H5SL_insert(fm->sel_chunks, new_chunk_info, &new_chunk_info->index) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINSERT, FAIL, "can't insert chunk into skip list") done: @@ -2883,7 +2882,7 @@ H5D_create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t new_chunk_info->coords[fm->f_ndims]=0; /* Insert the new chunk into the skip list */ - if(H5SL_insert(fm->fsel,new_chunk_info,&new_chunk_info->index) < 0) { + if(H5SL_insert(fm->sel_chunks,new_chunk_info,&new_chunk_info->index) < 0) { H5D_free_chunk_info(new_chunk_info,NULL,NULL); HGOTO_ERROR(H5E_DATASPACE,H5E_CANTINSERT,FAIL,"can't insert chunk into skip list") } /* end if */ @@ -2974,11 +2973,11 @@ H5D_create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm) assert(fm->f_ndims>0); /* Check for all I/O going to a single chunk */ - if(H5SL_count(fm->fsel)==1) { + if(H5SL_count(fm->sel_chunks)==1) { H5D_chunk_info_t *chunk_info; /* Pointer to chunk information */ /* Get the node */ - curr_node=H5SL_first(fm->fsel); + curr_node=H5SL_first(fm->sel_chunks); /* Get pointer to chunk's information */ chunk_info = (H5D_chunk_info_t *)H5SL_item(curr_node); @@ -3009,7 +3008,7 @@ H5D_create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm) } /* end for */ /* Iterate over each chunk in the chunk list */ - curr_node=H5SL_first(fm->fsel); + curr_node=H5SL_first(fm->sel_chunks); while(curr_node) { H5D_chunk_info_t *chunk_info; /* Pointer to chunk information */ @@ -3092,7 +3091,7 @@ H5D_chunk_file_cb(void UNUSED *elem, hid_t UNUSED type_id, unsigned ndims, const * find the chunk in the skip list. */ /* Get the chunk node from the skip list */ - if(NULL == (chunk_info = (H5D_chunk_info_t *)H5SL_search(fm->fsel, &chunk_index))) { + if(NULL == (chunk_info = (H5D_chunk_info_t *)H5SL_search(fm->sel_chunks, &chunk_index))) { H5S_t *fspace; /* Memory chunk's dataspace */ /* Allocate the file & memory chunk information */ @@ -3135,7 +3134,7 @@ H5D_chunk_file_cb(void UNUSED *elem, hid_t UNUSED type_id, unsigned ndims, const chunk_info->coords[fm->f_ndims]=0; /* Insert the new chunk into the skip list */ - if(H5SL_insert(fm->fsel,chunk_info,&chunk_info->index) < 0) { + if(H5SL_insert(fm->sel_chunks,chunk_info,&chunk_info->index) < 0) { H5D_free_chunk_info(chunk_info,NULL,NULL); HGOTO_ERROR(H5E_DATASPACE,H5E_CANTINSERT,FAIL,"can't insert chunk into skip list") } /* end if */ @@ -3203,7 +3202,7 @@ H5D_chunk_mem_cb(void UNUSED *elem, hid_t UNUSED type_id, unsigned ndims, const * find the chunk in the skip list. */ /* Get the chunk node from the skip list */ - if(NULL == (chunk_info = (H5D_chunk_info_t *)H5SL_search(fm->fsel, &chunk_index))) + if(NULL == (chunk_info = (H5D_chunk_info_t *)H5SL_search(fm->sel_chunks, &chunk_index))) HGOTO_ERROR(H5E_DATASPACE, H5E_NOTFOUND, FAIL, "can't locate chunk in skip list") /* Check if the chunk already has a memory space */ @@ -3412,3 +3411,4 @@ done: } /* end H5D_ioinfo_term() */ #endif + |