diff options
Diffstat (limited to 'src/H5Distore.c')
-rw-r--r-- | src/H5Distore.c | 71 |
1 files changed, 36 insertions, 35 deletions
diff --git a/src/H5Distore.c b/src/H5Distore.c index a21418e..861c28f 100644 --- a/src/H5Distore.c +++ b/src/H5Distore.c @@ -102,8 +102,8 @@ static int interface_initialize_g = 0; typedef struct H5F_rdcc_ent_t { hbool_t locked; /*entry is locked in cache */ hbool_t dirty; /*needs to be written to disk? */ - H5O_layout_t *layout; /*the layout message */ - H5O_pline_t *pline; /*filter pipeline message */ + H5O_layout_t layout; /*the layout message */ + H5O_pline_t pline; /*filter pipeline message */ hssize_t offset[H5O_LAYOUT_NDIMS]; /*chunk name */ size_t rd_count; /*bytes remaining to be read */ size_t wr_count; /*bytes remaining to be written */ @@ -932,17 +932,16 @@ H5F_istore_flush_entry(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, if (ent->dirty) { H5F_istore_ud1_t udata; /*pass through B-tree */ - udata.mesg = *(ent->layout); + udata.mesg = ent->layout; udata.key.filter_mask = 0; udata.addr = HADDR_UNDEF; udata.key.nbytes = ent->chunk_size; - for (u=0; u<ent->layout->ndims; u++) { + for (u=0; u<ent->layout.ndims; u++) udata.key.offset[u] = ent->offset[u]; - } alloc = ent->alloc_size; /* Should the chunk be filtered before writing it to disk? */ - if (ent->pline && ent->pline->nused) { + if (ent->pline.nused) { if (!reset) { /* * Copy the chunk to a new buffer before running it through @@ -964,7 +963,7 @@ H5F_istore_flush_entry(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, point_of_no_return = TRUE; ent->chunk = NULL; } - if (H5Z_pipeline(ent->pline, 0, &(udata.key.filter_mask), dxpl_cache->err_detect, + if (H5Z_pipeline(&ent->pline, 0, &(udata.key.filter_mask), dxpl_cache->err_detect, dxpl_cache->filter_cb, &(udata.key.nbytes), &alloc, &buf)<0) { HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL, "output pipeline failed"); @@ -975,7 +974,7 @@ H5F_istore_flush_entry(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, * Create the chunk it if it doesn't exist, or reallocate the chunk if * its size changed. Then write the data into the file. */ - if (H5B_insert(f, dxpl_id, H5B_ISTORE, ent->layout->addr, &udata)<0) + if (H5B_insert(f, dxpl_id, H5B_ISTORE, ent->layout.addr, &udata)<0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to allocate chunk"); if (H5F_block_write(f, H5FD_MEM_DRAW, udata.addr, udata.key.nbytes, dxpl_id, buf)<0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to write raw data to file"); @@ -988,11 +987,11 @@ H5F_istore_flush_entry(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, /* Reset, but do not free or removed from list */ if (reset) { point_of_no_return = FALSE; - ent->layout = H5O_free(H5O_LAYOUT_ID, ent->layout); + H5O_reset(H5O_LAYOUT_ID, &ent->layout); if (buf==ent->chunk) buf = NULL; if(ent->chunk!=NULL) - ent->chunk = H5F_istore_chunk_xfree(ent->chunk,ent->pline); - ent->pline = H5O_free(H5O_PLINE_ID, ent->pline); + ent->chunk = H5F_istore_chunk_xfree(ent->chunk,&ent->pline); + H5O_reset(H5O_PLINE_ID, &ent->pline); } done: @@ -1007,10 +1006,10 @@ done: * list. */ if (ret_value<0 && point_of_no_return) { - ent->layout = H5O_free(H5O_LAYOUT_ID, ent->layout); + H5O_reset(H5O_LAYOUT_ID, &ent->layout); if(ent->chunk) - ent->chunk = H5F_istore_chunk_xfree(ent->chunk,ent->pline); - ent->pline = H5O_free(H5O_PLINE_ID, ent->pline); + ent->chunk = H5F_istore_chunk_xfree(ent->chunk,&ent->pline); + H5O_reset(H5O_PLINE_ID, &ent->pline); } FUNC_LEAVE_NOAPI(ret_value); } @@ -1054,10 +1053,10 @@ H5F_istore_preempt(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, } else { /* Don't flush, just free chunk */ - ent->layout = H5O_free(H5O_LAYOUT_ID, ent->layout); + H5O_reset(H5O_LAYOUT_ID, &ent->layout); if(ent->chunk != NULL) - ent->chunk = H5F_istore_chunk_xfree(ent->chunk,ent->pline); - ent->pline = H5O_free(H5O_PLINE_ID, ent->pline); + ent->chunk = H5F_istore_chunk_xfree(ent->chunk,&ent->pline); + H5O_reset(H5O_PLINE_ID, &ent->pline); } /* Unlink from list */ @@ -1379,9 +1378,9 @@ H5F_istore_lock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, con idx=H5F_HASH(f,temp_idx); ent = rdcc->slot[idx]; - if (ent && layout->ndims==ent->layout->ndims && - H5F_addr_eq(layout->addr, ent->layout->addr)) { - for (u=0, found=TRUE; u<ent->layout->ndims; u++) { + if (ent && layout->ndims==ent->layout.ndims && + H5F_addr_eq(layout->addr, ent->layout.addr)) { + for (u=0, found=TRUE; u<ent->layout.ndims; u++) { if (offset[u]!=ent->offset[u]) { found = FALSE; break; @@ -1441,10 +1440,12 @@ H5F_istore_lock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, con HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for raw data chunk"); if (H5F_block_read(f, H5FD_MEM_DRAW, chunk_addr, udata->key.nbytes, dxpl_id, chunk)<0) HGOTO_ERROR (H5E_IO, H5E_READERROR, NULL, "unable to read raw data chunk"); - if (H5Z_pipeline(pline, H5Z_FLAG_REVERSE, &(udata->key.filter_mask), dxpl_cache->err_detect, - dxpl_cache->filter_cb, &(udata->key.nbytes), &chunk_alloc, &chunk)<0) { - HGOTO_ERROR(H5E_PLINE, H5E_READERROR, NULL, "data pipeline read failed"); - } + + if (pline->nused) + if (H5Z_pipeline(pline, H5Z_FLAG_REVERSE, &(udata->key.filter_mask), dxpl_cache->err_detect, + dxpl_cache->filter_cb, &(udata->key.nbytes), &chunk_alloc, &chunk)<0) { + HGOTO_ERROR(H5E_PLINE, H5E_READERROR, NULL, "data pipeline read failed"); + } rdcc->nmisses++; } else { H5D_fill_value_t fill_status; @@ -1505,8 +1506,8 @@ H5F_istore_lock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, con ent->dirty = FALSE; ent->chunk_size = chunk_size; ent->alloc_size = chunk_size; - ent->layout = H5O_copy(H5O_LAYOUT_ID, layout, NULL); - ent->pline = H5O_copy(H5O_PLINE_ID, pline, NULL); + H5O_copy(H5O_LAYOUT_ID, layout, &ent->layout); + H5O_copy(H5O_PLINE_ID, pline, &ent->pline); for (u=0; u<layout->ndims; u++) ent->offset[u] = offset[u]; ent->rd_count = chunk_size; @@ -1642,8 +1643,8 @@ H5F_istore_unlock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, HDmemset (&x, 0, sizeof x); x.dirty = TRUE; - x.layout = H5O_copy (H5O_LAYOUT_ID, layout, NULL); - x.pline = H5O_copy (H5O_PLINE_ID, pline, NULL); + H5O_copy (H5O_LAYOUT_ID, layout, &x.layout); + H5O_copy (H5O_PLINE_ID, pline, &x.pline); for (u=0; u<layout->ndims; u++) x.offset[u] = offset[u]; assert(layout->chunk_size>0); @@ -2296,8 +2297,8 @@ H5F_istore_allocate(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout, /* Look for chunk in cache */ for(ent = rdcc->head; ent && !chunk_exists; ent = ent->next) { /* Make certain we are dealing with the correct B-tree, etc */ - if (layout->ndims==ent->layout->ndims && - H5F_addr_eq(layout->addr, ent->layout->addr)) { + if (layout->ndims==ent->layout.ndims && + H5F_addr_eq(layout->addr, ent->layout.addr)) { /* Assume a match */ chunk_exists = 1; @@ -2514,10 +2515,10 @@ H5F_istore_prune_by_extent(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, next = ent->next; /* Make certain we are dealing with the correct B-tree, etc */ - if (layout->ndims==ent->layout->ndims && - H5F_addr_eq(layout->addr, ent->layout->addr)) { + if (layout->ndims==ent->layout.ndims && + H5F_addr_eq(layout->addr, ent->layout.addr)) { found = 0; - for(u = 0; u < ent->layout->ndims - 1; u++) { + for(u = 0; u < ent->layout.ndims - 1; u++) { if((hsize_t)ent->offset[u] > curr_dims[u]) { found = 1; break; @@ -2528,7 +2529,7 @@ H5F_istore_prune_by_extent(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, if(found) { #if defined (H5F_ISTORE_DEBUG) HDfputs("cache:remove:[", stdout); - for(u = 0; u < ent->layout->ndims - 1; u++) { + for(u = 0; u < ent->layout.ndims - 1; u++) { HDfprintf(stdout, "%s%Hd", u ? ", " : "", ent->offset[u]); } HDfputs("]\n", stdout); @@ -2882,7 +2883,7 @@ H5F_istore_delete(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout) next=ent->next; /* Is the chunk to be deleted this cache entry? */ - if(layout->addr==ent->layout->addr) + if(layout->addr==ent->layout.addr) /* Remove entry without flushing */ if (H5F_istore_preempt(f, &dxpl_cache, dxpl_id, ent, FALSE )<0) HGOTO_ERROR (H5E_IO, H5E_CANTFLUSH, FAIL, "unable to flush one or more raw data chunks"); |