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-rw-r--r--src/H5Dscatgath.c79
1 files changed, 35 insertions, 44 deletions
diff --git a/src/H5Dscatgath.c b/src/H5Dscatgath.c
index 266f5f5..8293562 100644
--- a/src/H5Dscatgath.c
+++ b/src/H5Dscatgath.c
@@ -43,13 +43,11 @@
/* Local Prototypes */
/********************/
static herr_t H5D__scatter_file(const H5D_io_info_t *io_info,
- const H5S_t *file_space, H5S_sel_iter_t *file_iter, size_t nelmts,
- const void *buf);
+ H5S_sel_iter_t *file_iter, size_t nelmts, const void *buf);
static size_t H5D__gather_file(const H5D_io_info_t *io_info,
- const H5S_t *file_space, H5S_sel_iter_t *file_iter, size_t nelmts,
- void *buf);
-static herr_t H5D__compound_opt_read(size_t nelmts, const H5S_t *mem_space,
- H5S_sel_iter_t *iter, const H5D_type_info_t *type_info, void *user_buf/*out*/);
+ H5S_sel_iter_t *file_iter, size_t nelmts, void *buf);
+static herr_t H5D__compound_opt_read(size_t nelmts, H5S_sel_iter_t *iter,
+ const H5D_type_info_t *type_info, void *user_buf/*out*/);
static herr_t H5D__compound_opt_write(size_t nelmts, const H5D_type_info_t *type_info);
@@ -90,9 +88,8 @@ H5FL_SEQ_EXTERN(hsize_t);
*-------------------------------------------------------------------------
*/
static herr_t
-H5D__scatter_file(const H5D_io_info_t *_io_info,
- const H5S_t *space, H5S_sel_iter_t *iter, size_t nelmts,
- const void *_buf)
+H5D__scatter_file(const H5D_io_info_t *_io_info, H5S_sel_iter_t *iter,
+ size_t nelmts, const void *_buf)
{
H5D_io_info_t tmp_io_info; /* Temporary I/O info object */
hsize_t *off = NULL; /* Pointer to sequence offsets */
@@ -111,7 +108,6 @@ H5D__scatter_file(const H5D_io_info_t *_io_info,
/* Check args */
HDassert(_io_info);
- HDassert(space);
HDassert(iter);
HDassert(nelmts > 0);
HDassert(_buf);
@@ -138,7 +134,7 @@ H5D__scatter_file(const H5D_io_info_t *_io_info,
/* Loop until all elements are written */
while(nelmts > 0) {
/* Get list of sequences for selection to write */
- if(H5S_SELECT_GET_SEQ_LIST(space, H5S_GET_SEQ_LIST_SORTED, iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
+ if(H5S_SELECT_ITER_GET_SEQ_LIST(iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
/* Reset the current sequence information */
@@ -191,9 +187,8 @@ done:
*-------------------------------------------------------------------------
*/
static size_t
-H5D__gather_file(const H5D_io_info_t *_io_info,
- const H5S_t *space, H5S_sel_iter_t *iter, size_t nelmts,
- void *_buf/*out*/)
+H5D__gather_file(const H5D_io_info_t *_io_info, H5S_sel_iter_t *iter,
+ size_t nelmts, void *_buf/*out*/)
{
H5D_io_info_t tmp_io_info; /* Temporary I/O info object */
hsize_t *off = NULL; /* Pointer to sequence offsets */
@@ -214,7 +209,6 @@ H5D__gather_file(const H5D_io_info_t *_io_info,
HDassert(_io_info);
HDassert(_io_info->dset);
HDassert(_io_info->store);
- HDassert(space);
HDassert(iter);
HDassert(nelmts > 0);
HDassert(_buf);
@@ -241,7 +235,7 @@ H5D__gather_file(const H5D_io_info_t *_io_info,
/* Loop until all elements are read */
while(nelmts > 0) {
/* Get list of sequences for selection to read */
- if(H5S_SELECT_GET_SEQ_LIST(space, H5S_GET_SEQ_LIST_SORTED, iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
+ if(H5S_SELECT_ITER_GET_SEQ_LIST(iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, 0, "sequence length generation failed")
/* Reset the current sequence information */
@@ -288,8 +282,8 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5D__scatter_mem (const void *_tscat_buf, const H5S_t *space,
- H5S_sel_iter_t *iter, size_t nelmts, void *_buf/*out*/)
+H5D__scatter_mem(const void *_tscat_buf, H5S_sel_iter_t *iter, size_t nelmts,
+ void *_buf/*out*/)
{
uint8_t *buf = (uint8_t *)_buf; /* Get local copies for address arithmetic */
const uint8_t *tscat_buf = (const uint8_t *)_tscat_buf;
@@ -307,7 +301,6 @@ H5D__scatter_mem (const void *_tscat_buf, const H5S_t *space,
/* Check args */
HDassert(tscat_buf);
- HDassert(space);
HDassert(iter);
HDassert(nelmts > 0);
HDassert(buf);
@@ -329,7 +322,7 @@ H5D__scatter_mem (const void *_tscat_buf, const H5S_t *space,
/* Loop until all elements are written */
while(nelmts > 0) {
/* Get list of sequences for selection to write */
- if(H5S_SELECT_GET_SEQ_LIST(space, 0, iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
+ if(H5S_SELECT_ITER_GET_SEQ_LIST(iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
HGOTO_ERROR (H5E_INTERNAL, H5E_UNSUPPORTED, 0, "sequence length generation failed")
/* Loop, while sequences left to process */
@@ -376,8 +369,8 @@ done:
*-------------------------------------------------------------------------
*/
size_t
-H5D__gather_mem(const void *_buf, const H5S_t *space,
- H5S_sel_iter_t *iter, size_t nelmts, void *_tgath_buf/*out*/)
+H5D__gather_mem(const void *_buf, H5S_sel_iter_t *iter, size_t nelmts,
+ void *_tgath_buf/*out*/)
{
const uint8_t *buf = (const uint8_t *)_buf; /* Get local copies for address arithmetic */
uint8_t *tgath_buf = (uint8_t *)_tgath_buf;
@@ -395,7 +388,6 @@ H5D__gather_mem(const void *_buf, const H5S_t *space,
/* Check args */
HDassert(buf);
- HDassert(space);
HDassert(iter);
HDassert(nelmts > 0);
HDassert(tgath_buf);
@@ -417,7 +409,7 @@ H5D__gather_mem(const void *_buf, const H5S_t *space,
/* Loop until all elements are written */
while(nelmts > 0) {
/* Get list of sequences for selection to write */
- if(H5S_SELECT_GET_SEQ_LIST(space, 0, iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
+ if(H5S_SELECT_ITER_GET_SEQ_LIST(iter, vec_size, nelmts, &nseq, &nelem, off, len) < 0)
HGOTO_ERROR (H5E_INTERNAL, H5E_UNSUPPORTED, 0, "sequence length generation failed")
/* Loop, while sequences left to process */
@@ -495,13 +487,13 @@ H5D__scatgath_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate file iterator")
/* Figure out the strip mine size. */
- if(H5S_select_iter_init(file_iter, file_space, type_info->src_type_size) < 0)
+ if(H5S_select_iter_init(file_iter, file_space, type_info->src_type_size, H5S_SEL_ITER_GET_SEQ_LIST_SORTED) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize file selection information")
file_iter_init = TRUE; /*file selection iteration info has been initialized */
- if(H5S_select_iter_init(mem_iter, mem_space, type_info->dst_type_size) < 0)
+ if(H5S_select_iter_init(mem_iter, mem_space, type_info->dst_type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information")
mem_iter_init = TRUE; /*file selection iteration info has been initialized */
- if(H5S_select_iter_init(bkg_iter, mem_space, type_info->dst_type_size) < 0)
+ if(H5S_select_iter_init(bkg_iter, mem_space, type_info->dst_type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize background selection information")
bkg_iter_init = TRUE; /*file selection iteration info has been initialized */
@@ -522,7 +514,7 @@ H5D__scatgath_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
/*
* Gather data
*/
- n = H5D__gather_file(io_info, file_space, file_iter, smine_nelmts, type_info->tconv_buf/*out*/);
+ n = H5D__gather_file(io_info, file_iter, smine_nelmts, type_info->tconv_buf/*out*/);
if(n != smine_nelmts)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file gather failed")
@@ -531,12 +523,12 @@ H5D__scatgath_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
* bypass the rest of steps.
*/
if(type_info->cmpd_subset && H5T_SUBSET_FALSE != type_info->cmpd_subset->subset) {
- if(H5D__compound_opt_read(smine_nelmts, mem_space, mem_iter, type_info, buf /*out*/) < 0)
+ if(H5D__compound_opt_read(smine_nelmts, mem_iter, type_info, buf /*out*/) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "datatype conversion failed")
} /* end if */
else {
if(H5T_BKG_YES == type_info->need_bkg) {
- n = H5D__gather_mem(buf, mem_space, bkg_iter, smine_nelmts, type_info->bkg_buf/*out*/);
+ n = H5D__gather_mem(buf, bkg_iter, smine_nelmts, type_info->bkg_buf/*out*/);
if(n != smine_nelmts)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "mem gather failed")
} /* end if */
@@ -562,7 +554,7 @@ H5D__scatgath_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
}
/* Scatter the data into memory */
- if(H5D__scatter_mem(type_info->tconv_buf, mem_space, mem_iter, smine_nelmts, buf/*out*/) < 0)
+ if(H5D__scatter_mem(type_info->tconv_buf, mem_iter, smine_nelmts, buf/*out*/) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "scatter failed")
} /* end else */
} /* end for */
@@ -635,13 +627,13 @@ H5D__scatgath_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_in
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate file iterator")
/* Figure out the strip mine size. */
- if(H5S_select_iter_init(file_iter, file_space, type_info->dst_type_size) < 0)
+ if(H5S_select_iter_init(file_iter, file_space, type_info->dst_type_size, H5S_SEL_ITER_GET_SEQ_LIST_SORTED) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize file selection information")
file_iter_init = TRUE; /*file selection iteration info has been initialized */
- if(H5S_select_iter_init(mem_iter, mem_space, type_info->src_type_size) < 0)
+ if(H5S_select_iter_init(mem_iter, mem_space, type_info->src_type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information")
mem_iter_init = TRUE; /*file selection iteration info has been initialized */
- if(H5S_select_iter_init(bkg_iter, file_space, type_info->dst_type_size) < 0)
+ if(H5S_select_iter_init(bkg_iter, file_space, type_info->dst_type_size, H5S_SEL_ITER_GET_SEQ_LIST_SORTED) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize background selection information")
bkg_iter_init = TRUE; /*file selection iteration info has been initialized */
@@ -658,7 +650,7 @@ H5D__scatgath_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_in
* buffer. Also gather data from the file into the background buffer
* if necessary.
*/
- n = H5D__gather_mem(buf, mem_space, mem_iter, smine_nelmts, type_info->tconv_buf/*out*/);
+ n = H5D__gather_mem(buf, mem_iter, smine_nelmts, type_info->tconv_buf/*out*/);
if(n != smine_nelmts)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "mem gather failed")
@@ -675,7 +667,7 @@ H5D__scatgath_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_in
} /* end if */
else {
if(H5T_BKG_YES == type_info->need_bkg) {
- n = H5D__gather_file(io_info, file_space, bkg_iter, smine_nelmts, type_info->bkg_buf/*out*/);
+ n = H5D__gather_file(io_info, bkg_iter, smine_nelmts, type_info->bkg_buf/*out*/);
if(n != smine_nelmts)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file gather failed")
} /* end if */
@@ -705,7 +697,7 @@ H5D__scatgath_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_in
/*
* Scatter the data out to the file.
*/
- if(H5D__scatter_file(io_info, file_space, file_iter, smine_nelmts, type_info->tconv_buf) < 0)
+ if(H5D__scatter_file(io_info, file_iter, smine_nelmts, type_info->tconv_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "scatter failed")
} /* end for */
@@ -761,7 +753,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5D__compound_opt_read(size_t nelmts, const H5S_t *space, H5S_sel_iter_t *iter,
+H5D__compound_opt_read(size_t nelmts, H5S_sel_iter_t *iter,
const H5D_type_info_t *type_info, void *user_buf/*out*/)
{
uint8_t *ubuf = (uint8_t *)user_buf; /* Cast for pointer arithmetic */
@@ -777,7 +769,6 @@ H5D__compound_opt_read(size_t nelmts, const H5S_t *space, H5S_sel_iter_t *iter,
/* Check args */
HDassert(nelmts > 0);
- HDassert(space);
HDassert(iter);
HDassert(type_info);
HDassert(type_info->cmpd_subset);
@@ -814,7 +805,7 @@ H5D__compound_opt_read(size_t nelmts, const H5S_t *space, H5S_sel_iter_t *iter,
size_t elmtno; /* Element counter */
/* Get list of sequences for selection to write */
- if(H5S_SELECT_GET_SEQ_LIST(space, 0, iter, vec_size, nelmts, &nseq, &elmtno, off, len) < 0)
+ if(H5S_SELECT_ITER_GET_SEQ_LIST(iter, vec_size, nelmts, &nseq, &elmtno, off, len) < 0)
HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, 0, "sequence length generation failed")
/* Loop, while sequences left to process */
@@ -981,7 +972,7 @@ H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id,
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate selection iterator")
/* Initialize selection iterator */
- if(H5S_select_iter_init(iter, dst_space, type_size) < 0)
+ if(H5S_select_iter_init(iter, dst_space, type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize selection iterator information")
iter_init = TRUE;
@@ -1005,7 +996,7 @@ H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id,
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "callback returned more elements than in selection")
/* Scatter data */
- if(H5D__scatter_mem(src_buf, dst_space, iter, nelmts_scatter, dst_buf) < 0)
+ if(H5D__scatter_mem(src_buf, iter, nelmts_scatter, dst_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "scatter failed")
nelmts -= (hssize_t)nelmts_scatter;
@@ -1091,14 +1082,14 @@ H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id,
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate selection iterator")
/* Initialize selection iterator */
- if(H5S_select_iter_init(iter, src_space, type_size) < 0)
+ if(H5S_select_iter_init(iter, src_space, type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize selection iterator information")
iter_init = TRUE;
/* Loop until all data has been scattered */
while(nelmts > 0) {
/* Gather data */
- if(0 == (nelmts_gathered = H5D__gather_mem(src_buf, src_space, iter, MIN(dst_buf_nelmts, (size_t)nelmts), dst_buf)))
+ if(0 == (nelmts_gathered = H5D__gather_mem(src_buf, iter, MIN(dst_buf_nelmts, (size_t)nelmts), dst_buf)))
HGOTO_ERROR(H5E_IO, H5E_CANTCOPY, FAIL, "gather failed")
HDassert(nelmts_gathered == MIN(dst_buf_nelmts, (size_t)nelmts));
generated by cgit v0.12 at 2024-11-16 07:40:02 (GMT)