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-rw-r--r--src/H5Dseq.c160
1 files changed, 30 insertions, 130 deletions
diff --git a/src/H5Dseq.c b/src/H5Dseq.c
index f8ecf00..5585315 100644
--- a/src/H5Dseq.c
+++ b/src/H5Dseq.c
@@ -23,16 +23,16 @@
*
*/
-#define H5F_PACKAGE /*suppress error about including H5Fpkg */
+#define H5D_PACKAGE /*suppress error about including H5Dpkg */
/* Pablo information */
/* (Put before include files to avoid problems with inline functions) */
-#define PABLO_MASK H5Fseq_mask
+#define PABLO_MASK H5Dseq_mask
#include "H5private.h" /* Generic Functions */
-#include "H5Dprivate.h" /* Datasets */
+#include "H5Dpkg.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
-#include "H5Fpkg.h" /* Files */
+#include "H5Fprivate.h" /* Files */
#include "H5FDprivate.h" /* File drivers */
#include "H5Iprivate.h" /* IDs */
#include "H5MFprivate.h" /* File space management */
@@ -47,105 +47,7 @@ static int interface_initialize_g = 0;
/*-------------------------------------------------------------------------
- * Function: H5F_seq_read
- *
- * Purpose: Reads a sequence of bytes from a file dataset into a buffer in
- * in memory. The data is read from file F and the array's size and
- * storage information is in LAYOUT. External files are described
- * according to the external file list, EFL. The sequence offset is
- * DSET_OFFSET in the dataset (offsets are in terms of bytes) and the
- * size of the hyperslab is SEQ_LEN. The total size of the file array
- * is implied in the LAYOUT argument.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * Thursday, September 28, 2000
- *
- * Modifications:
- * Re-written to use new vector I/O call - QAK, 7/7/01
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5F_seq_read(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
- hid_t dxpl_id, const H5O_layout_t *layout,
- const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
- size_t seq_len, hsize_t dset_offset, void *buf/*out*/)
-{
- hsize_t mem_off=0; /* Offset in memory */
- size_t mem_len=seq_len; /* Length in memory */
- size_t mem_curr_seq=0; /* "Current sequence" in memory */
- size_t dset_curr_seq=0; /* "Current sequence" in dataset */
- herr_t ret_value=SUCCEED; /* Return value */
-
- FUNC_ENTER_NOAPI(H5F_seq_read, FAIL);
-
- /* Check args */
- assert(f);
- assert(layout);
- assert(buf);
- assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
-
- if (H5F_seq_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
- HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "vector read failed");
-
-done:
- FUNC_LEAVE_NOAPI(ret_value);
-} /* H5F_seq_read() */
-
-
-/*-------------------------------------------------------------------------
- * Function: H5F_seq_write
- *
- * Purpose: Writes a sequence of bytes to a file dataset from a buffer in
- * in memory. The data is written to file F and the array's size and
- * storage information is in LAYOUT. External files are described
- * according to the external file list, EFL. The sequence offset is
- * DSET_OFFSET in the dataset (offsets are in terms of bytes) and the
- * size of the hyperslab is SEQ_LEN. The total size of the file array
- * is implied in the LAYOUT argument.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * Monday, October 9, 2000
- *
- * Modifications:
- * Re-written to use new vector I/O routine - QAK, 7/7/01
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5F_seq_write(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
- hid_t dxpl_id, H5O_layout_t *layout,
- const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
- size_t seq_len, hsize_t dset_offset, const void *buf)
-{
- hsize_t mem_off=0; /* Offset in memory */
- size_t mem_len=seq_len; /* Length in memory */
- size_t mem_curr_seq=0; /* "Current sequence" in memory */
- size_t dset_curr_seq=0; /* "Current sequence" in dataset */
- herr_t ret_value=SUCCEED; /* Return value */
-
- FUNC_ENTER_NOAPI(H5F_seq_write, FAIL);
-
- /* Check args */
- assert(f);
- assert(layout);
- assert(buf);
- assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
-
- if (H5F_seq_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
- HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "vector write failed");
-
-done:
- FUNC_LEAVE_NOAPI(ret_value);
-} /* H5F_seq_write() */
-
-
-/*-------------------------------------------------------------------------
- * Function: H5F_seq_readvv
+ * Function: H5D_seq_readvv
*
* Purpose: Reads in a vector of byte sequences from a file dataset into a
* buffer in in memory. The data is read from file F and the array's size
@@ -185,22 +87,20 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
- const struct H5O_layout_t *layout,
- const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
+H5D_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ H5D_t *dset, const H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *buf/*out*/)
{
ssize_t ret_value; /* Return value */
- FUNC_ENTER_NOAPI(H5F_seq_readvv, FAIL);
+ FUNC_ENTER_NOAPI(H5D_seq_readvv, FAIL);
/* Check args */
assert(f);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); /* Make certain we have the correct type of property list */
- assert(layout);
- assert(dcpl_cache);
+ assert(dset);
assert(dset_curr_seq);
assert(*dset_curr_seq<dset_max_nseq);
assert(dset_len_arr);
@@ -211,7 +111,7 @@ H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_i
assert(mem_offset_arr);
assert(buf);
- switch (layout->type) {
+ switch (dset->layout.type) {
case H5D_CONTIGUOUS:
/* Read directly from file if the dataset is in an external file */
if (store && store->efl.nused>0) {
@@ -227,17 +127,18 @@ H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_i
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "external data read failed");
} else {
/* Pass along the vector of sequences to read */
- if((ret_value=H5F_contig_readvv(f, layout->u.contig.size, layout->u.contig.addr,
+ if((ret_value=H5D_contig_readvv(f, dxpl_id, dset,
+ dset->layout.u.contig.addr, dset->layout.u.contig.size,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
- dxpl_id, buf))<0)
+ buf))<0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "block read failed");
} /* end else */
break;
case H5D_CHUNKED:
assert(store);
- if((ret_value=H5F_istore_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store,
+ if((ret_value=H5D_istore_readvv(f, dxpl_cache, dxpl_id, dset, store,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
buf))<0)
@@ -246,10 +147,10 @@ H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_i
case H5D_COMPACT:
/* Pass along the vector of sequences to read */
- if((ret_value=H5F_compact_readvv(f, layout,
+ if((ret_value=H5D_compact_readvv(f, dxpl_id, dset,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
- dxpl_id, buf))<0)
+ buf))<0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "compact read failed");
break;
@@ -260,11 +161,11 @@ H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_i
done:
FUNC_LEAVE_NOAPI(ret_value);
-} /* H5F_seq_readvv() */
+} /* H5D_seq_readvv() */
/*-------------------------------------------------------------------------
- * Function: H5F_seq_writevv
+ * Function: H5D_seq_writevv
*
* Purpose: Writes a vector of byte sequences from a buffer in memory into
* a vector of byte sequences in a file dataset. The data is written to
@@ -294,22 +195,20 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
- hid_t dxpl_id, struct H5O_layout_t *layout,
- const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
+H5D_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, struct H5D_t *dset, const H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *buf)
{
ssize_t ret_value; /* Return value */
- FUNC_ENTER_NOAPI(H5F_seq_writevv, FAIL);
+ FUNC_ENTER_NOAPI(H5D_seq_writevv, FAIL);
/* Check args */
assert(f);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); /* Make certain we have the correct type of property list */
- assert(layout);
- assert(dcpl_cache);
+ assert(dset);
assert(dset_curr_seq);
assert(*dset_curr_seq<dset_max_nseq);
assert(dset_len_arr);
@@ -320,7 +219,7 @@ H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
assert(mem_offset_arr);
assert(buf);
- switch (layout->type) {
+ switch (dset->layout.type) {
case H5D_CONTIGUOUS:
/* Write directly to file if the dataset is in an external file */
if (store && store->efl.nused>0) {
@@ -336,17 +235,18 @@ H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "external data write failed");
} else {
/* Pass along the vector of sequences to write */
- if ((ret_value=H5F_contig_writevv(f, layout->u.contig.size, layout->u.contig.addr,
+ if ((ret_value=H5D_contig_writevv(f, dxpl_id, dset,
+ dset->layout.u.contig.addr, dset->layout.u.contig.size,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
- dxpl_id, buf))<0)
+ buf))<0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "block write failed");
} /* end else */
break;
case H5D_CHUNKED:
assert(store);
- if((ret_value=H5F_istore_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store,
+ if((ret_value=H5D_istore_writevv(f, dxpl_cache, dxpl_id, dset, store,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
buf))<0)
@@ -355,10 +255,10 @@ H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
case H5D_COMPACT:
/* Pass along the vector of sequences to write */
- if((ret_value=H5F_compact_writevv(f, layout,
+ if((ret_value=H5D_compact_writevv(f, dxpl_id, dset,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
- dxpl_id, buf))<0)
+ buf))<0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "compact write failed");
break;
@@ -369,4 +269,4 @@ H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
done:
FUNC_LEAVE_NOAPI(ret_value);
-} /* H5F_seq_writevv() */
+} /* H5D_seq_writevv() */