diff options
Diffstat (limited to 'src/H5Fint.c')
| -rw-r--r-- | src/H5Fint.c | 290 |
1 files changed, 260 insertions, 30 deletions
diff --git a/src/H5Fint.c b/src/H5Fint.c index 0000512..1431be0 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -76,12 +76,14 @@ typedef struct H5F_olist_t { /* Local Prototypes */ /********************/ +static herr_t H5F__close_cb(H5VL_object_t *file_vol_obj); static herr_t H5F__set_vol_conn(H5F_t *file); static herr_t H5F__get_objects(const H5F_t *f, unsigned types, size_t max_index, hid_t *obj_id_list, hbool_t app_ref, size_t *obj_id_count_ptr); static int H5F__get_objects_cb(void *obj_ptr, hid_t obj_id, void *key); static herr_t H5F__build_name(const char *prefix, const char *file_name, char **full_name/*out*/); static char *H5F__getenv_prefix_name(char **env_prefix/*in,out*/); static H5F_t *H5F__new(H5F_shared_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t *lf); +static herr_t H5F__check_if_using_file_locks(H5P_genplist_t *fapl, hbool_t *use_file_locking); static herr_t H5F__build_actual_name(const H5F_t *f, const H5P_genplist_t *fapl, const char *name, char ** /*out*/ actual_name); static herr_t H5F__flush_phase1(H5F_t *f); static herr_t H5F__flush_phase2(H5F_t *f, hbool_t closing); @@ -91,6 +93,15 @@ static herr_t H5F__flush_phase2(H5F_t *f, hbool_t closing); /* Package Variables */ /*********************/ +/* Package initialization variable */ +hbool_t H5_PKG_INIT_VAR = FALSE; + +/* Based on the value of the HDF5_USE_FILE_LOCKING environment variable. + * TRUE/FALSE have obvious meanings. FAIL means the environment variable was + * not set, so the code should ignore it and use the fapl value instead. + */ +htri_t use_locks_env_g = FAIL; + /*****************************/ /* Library Private Variables */ @@ -107,6 +118,186 @@ H5FL_DEFINE(H5F_t); /* Declare a free list to manage the H5F_shared_t struct */ H5FL_DEFINE(H5F_shared_t); +/* File ID class */ +static const H5I_class_t H5I_FILE_CLS[1] = {{ + H5I_FILE, /* ID class value */ + 0, /* Class flags */ + 0, /* # of reserved IDs for class */ + (H5I_free_t)H5F__close_cb /* Callback routine for closing objects of this class */ +}}; + + + +/*------------------------------------------------------------------------- + * Function: H5F_init + * + * Purpose: Initialize the interface from some other layer. + * + * Return: Success: non-negative + * + * Failure: negative + *------------------------------------------------------------------------- + */ +herr_t +H5F_init(void) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + /* FUNC_ENTER() does all the work */ + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5F_init() */ + + +/*-------------------------------------------------------------------------- +NAME + H5F__init_package -- Initialize interface-specific information +USAGE + herr_t H5F__init_package() +RETURNS + Non-negative on success/Negative on failure +DESCRIPTION + Initializes any interface-specific data or routines. + +--------------------------------------------------------------------------*/ +herr_t +H5F__init_package(void) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_PACKAGE + + /* + * Initialize the atom group for the file IDs. + */ + if(H5I_register_type(H5I_FILE_CLS) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to initialize interface") + + /* Check the file locking environment variable */ + if(H5F__parse_file_lock_env_var(&use_locks_env_g) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to parse file locking environment variable") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5F__init_package() */ + + +/*------------------------------------------------------------------------- + * Function: H5F_term_package + * + * Purpose: Terminate this interface: free all memory and reset global + * variables to their initial values. Release all ID groups + * associated with this interface. + * + * Return: Success: Positive if anything was done that might + * have affected other interfaces; + * zero otherwise. + * + * Failure: Never fails + * + *------------------------------------------------------------------------- + */ +int +H5F_term_package(void) +{ + int n = 0; + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + if(H5_PKG_INIT_VAR) { + if(H5I_nmembers(H5I_FILE) > 0) { + (void)H5I_clear_type(H5I_FILE, FALSE, FALSE); + n++; /*H5I*/ + } /* end if */ + else { + /* Make certain we've cleaned up all the shared file objects */ + H5F_sfile_assert_num(0); + + /* Destroy the file object id group */ + n += (H5I_dec_type_ref(H5I_FILE) > 0); + + /* Mark closed */ + if(0 == n) + H5_PKG_INIT_VAR = FALSE; + } /* end else */ + } /* end if */ + + FUNC_LEAVE_NOAPI(n) +} /* end H5F_term_package() */ + + +/*------------------------------------------------------------------------- + * Function: H5F__close_cb + * + * Purpose: Closes a file or causes the close operation to be pended. + * This function is called from the API and gets called + * by H5Fclose->H5I_dec_ref->H5F__close_cb when H5I_dec_ref() + * decrements the file ID reference count to zero. The file ID + * is removed from the H5I_FILE group by H5I_dec_ref() just + * before H5F__close_cb() is called. If there are open object + * headers then the close is pended by moving the file to the + * H5I_FILE_CLOSING ID group (the f->closing contains the ID + * assigned to file). + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +static herr_t +H5F__close_cb(H5VL_object_t *file_vol_obj) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity check */ + HDassert(file_vol_obj); + + /* Close the file */ + if(H5VL_file_close(file_vol_obj, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "unable to close file") + + /* Free the VOL object */ + if(H5VL_free_object(file_vol_obj) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTDEC, FAIL, "unable to free VOL object") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5F__close_cb() */ + + +/*------------------------------------------------------------------------- + * Function: H5F__parse_file_lock_env_var + * + * Purpose: Parses the HDF5_USE_FILE_LOCKING environment variable. + * + * NOTE: This is done in a separate function so we can call it from + * the test code. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +herr_t +H5F__parse_file_lock_env_var(htri_t *use_locks) +{ + char *lock_env_var = NULL; /* Environment variable pointer */ + + FUNC_ENTER_PACKAGE_NOERR + + /* Check the file locking environment variable */ + lock_env_var = HDgetenv("HDF5_USE_FILE_LOCKING"); + if(lock_env_var && (!HDstrcmp(lock_env_var, "FALSE") || !HDstrcmp(lock_env_var, "0"))) + *use_locks = FALSE; /* Override: Never use locks */ + else if(lock_env_var && (!HDstrcmp(lock_env_var, "TRUE") || !HDstrcmp(lock_env_var, "BEST_EFFORT") || !HDstrcmp(lock_env_var, "1"))) + *use_locks = TRUE; /* Override: Always use locks */ + else + *use_locks = FAIL; /* Environment variable not set, or not set correctly */ + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5F__parse_file_lock_env_var() */ /*------------------------------------------------------------------------- @@ -391,7 +582,7 @@ H5F__get_objects(const H5F_t *f, unsigned types, size_t max_nobjs, hid_t *obj_id if(H5I_iterate(H5I_DATASET, H5F__get_objects_cb, &olist, app_ref) < 0) HGOTO_ERROR(H5E_FILE, H5E_BADITER, FAIL, "iteration failed(2)") } /* end if */ - } /* end if */ + } /* If the caller just wants to count the number of objects (OLIST.MAX_NOBJS is zero), * or the caller wants to get the list of IDs and the list isn't full, @@ -402,8 +593,8 @@ H5F__get_objects(const H5F_t *f, unsigned types, size_t max_nobjs, hid_t *obj_id olist.obj_type = H5I_GROUP; if(H5I_iterate(H5I_GROUP, H5F__get_objects_cb, &olist, app_ref) < 0) HGOTO_ERROR(H5E_FILE, H5E_BADITER, FAIL, "iteration failed(3)") - } /* end if */ - } /* end if */ + } + } /* If the caller just wants to count the number of objects (OLIST.MAX_NOBJS is zero), * or the caller wants to get the list of IDs and the list isn't full, @@ -415,7 +606,7 @@ H5F__get_objects(const H5F_t *f, unsigned types, size_t max_nobjs, hid_t *obj_id if(H5I_iterate(H5I_DATATYPE, H5F__get_objects_cb, &olist, app_ref) < 0) HGOTO_ERROR(H5E_FILE, H5E_BADITER, FAIL, "iteration failed(4)") } /* end if */ - } /* end if */ + } /* If the caller just wants to count the number of objects (OLIST.MAX_NOBJS is zero), * or the caller wants to get the list of IDs and the list isn't full, @@ -427,7 +618,7 @@ H5F__get_objects(const H5F_t *f, unsigned types, size_t max_nobjs, hid_t *obj_id if(H5I_iterate(H5I_ATTR, H5F__get_objects_cb, &olist, app_ref) < 0) HGOTO_ERROR(H5E_FILE, H5E_BADITER, FAIL, "iteration failed(5)") } /* end if */ - } /* end if */ + } /* Set the number of objects currently open */ *obj_id_count_ptr = obj_id_count; @@ -1066,12 +1257,12 @@ H5F__new(H5F_shared_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5F f->shared->feature_flags &= ~(unsigned)H5FD_FEAT_ACCUMULATE_METADATA; if(H5FD_set_feature_flags(f->shared->lf, f->shared->feature_flags) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "can't set feature_flags in VFD") - } /* end if */ + } else { /* If no value for read attempts has been set, use the default */ if(!f->shared->read_attempts) f->shared->read_attempts = H5F_METADATA_READ_ATTEMPTS; - } /* end else */ + } /* Determine the # of bins for metdata read retries */ if(H5F_set_retries(f) < 0) @@ -1138,7 +1329,7 @@ done: HDONE_ERROR(H5E_FILE, H5E_CANTDEC, NULL, "can't close property list") f->shared = H5FL_FREE(H5F_shared_t, f->shared); - } /* end if */ + } /* Free VOL object */ if(f->vol_obj) @@ -1146,7 +1337,7 @@ done: HDONE_ERROR(H5E_FILE, H5E_CANTDEC, NULL, "unable to free VOL object") f = H5FL_FREE(H5F_t, f); - } /* end if */ + } FUNC_LEAVE_NOAPI(ret_value) } /* end H5F__new() */ @@ -1426,6 +1617,52 @@ H5F__dest(H5F_t *f, hbool_t flush) /*------------------------------------------------------------------------- + * Function: H5F__check_if_using_file_locks + * + * Purpose: Determines if this file will use file locks. + * + * There are three ways that file locking can be controlled: + * + * 1) The configure/cmake option that sets the H5_USE_FILE_LOCKING + * symbol (which is used as the default fapl value). + * + * 2) The H5Pset_file_locking() API call, which will override + * the configuration default. + * + * 3) The HDF5_USE_FILE_LOCKING environment variable, which overrides + * everything above. + * + * The main reason to disable file locking is to prevent errors on file + * systems where locking is not supported or has been disabled (as is + * often the case in parallel file systems). + * + * Return: SUCCEED/FAIL + *------------------------------------------------------------------------- + */ +static herr_t +H5F__check_if_using_file_locks(H5P_genplist_t *fapl, hbool_t *use_file_locking) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Make sure the out parameter has a value */ + *use_file_locking = TRUE; + + /* Check the fapl property */ + if(H5P_get(fapl, H5F_ACS_USE_FILE_LOCKING_NAME, use_file_locking) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get use file locking flag") + + /* Check the environment variable */ + if(use_locks_env_g != FAIL) + *use_file_locking = (use_locks_env_g == TRUE) ? TRUE : FALSE; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5F__check_if_using_file_locks() */ + + +/*------------------------------------------------------------------------- * Function: H5F_open * * Purpose: Opens (or creates) a file. This function understands the @@ -1514,8 +1751,7 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) hbool_t set_flag = FALSE; /*set the status_flags in the superblock */ hbool_t clear = FALSE; /*clear the status_flags */ hbool_t evict_on_close; /* evict on close value from plist */ - char *lock_env_var = NULL;/*env var pointer */ - hbool_t use_file_locking; /*read from env var */ + hbool_t use_file_locking = TRUE; /* Using file locks? */ hbool_t ci_load = FALSE; /* whether MDC ci load requested */ hbool_t ci_write = FALSE; /* whether MDC CI write requested */ H5F_t *ret_value = NULL; /*actual return value */ @@ -1533,15 +1769,13 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) if(NULL == (drvr = H5FD_get_class(fapl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "unable to retrieve VFL class") - /* Check the environment variable that determines if we care - * about file locking. File locking should be used unless explicitly - * disabled. - */ - lock_env_var = HDgetenv("HDF5_USE_FILE_LOCKING"); - if(lock_env_var && !HDstrcmp(lock_env_var, "FALSE")) - use_file_locking = FALSE; - else - use_file_locking = TRUE; + /* Get the file access property list, for future queries */ + if(NULL == (a_plist = (H5P_genplist_t *)H5I_object(fapl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not file access property list") + + /* Check if we are using file locking */ + if (H5F__check_if_using_file_locks(a_plist, &use_file_locking) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "unable to get file locking flag") /* * Opening a file is a two step process. First we try to open the @@ -1618,8 +1852,8 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) if(H5FD_lock(lf, (hbool_t)((flags & H5F_ACC_RDWR) ? TRUE : FALSE)) < 0) { /* Locking failed - Closing will remove the lock */ if(H5FD_close(lf) < 0) - HDONE_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to close low-level file info") - HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to lock the file") + HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, NULL, "unable to close low-level file info") + HGOTO_ERROR(H5E_FILE, H5E_CANTLOCKFILE, NULL, "unable to lock the file") } /* end if */ /* Create the 'top' file structure */ @@ -1651,10 +1885,6 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) shared = file->shared; lf = shared->lf; - /* Get the file access property list, for future queries */ - if(NULL == (a_plist = (H5P_genplist_t *)H5I_object(fapl_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not file access property list") - /* Check if page buffering is enabled */ if(H5P_get(a_plist, H5F_ACS_PAGE_BUFFER_SIZE_NAME, &page_buf_size) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "can't get page buffer size") @@ -1795,7 +2025,7 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) /* Remove the file lock for SWMR_WRITE */ if(use_file_locking && (H5F_INTENT(file) & H5F_ACC_SWMR_WRITE)) { if(H5FD_unlock(file->shared->lf) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to unlock the file") + HGOTO_ERROR(H5E_FILE, H5E_CANTUNLOCKFILE, NULL, "unable to unlock the file") } /* end if */ } /* end if */ else { /* H5F_ACC_RDONLY: check consistency of status_flags */ @@ -1854,7 +2084,7 @@ H5F__post_open(H5F_t *f) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5F__flush() */ +} /* end H5F__post_open() */ /*------------------------------------------------------------------------- @@ -2298,7 +2528,7 @@ H5F_get_id(H5F_t *file) if((ret_value = H5VL_wrap_register(H5I_FILE, file, FALSE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register group") file->id_exists = TRUE; - } /* end if */ + } else { /* Increment reference count on existing ID */ if(H5I_inc_ref(ret_value, FALSE) < 0) @@ -3033,7 +3263,7 @@ H5F_set_retries(H5F_t *f) /* Initialize the # of bins for retries */ f->shared->retries_nbins = 0; if(f->shared->read_attempts > 1) { - /* Use HDceil to ensure that the log10 value is rounded up to the + /* Use HDceil to ensure that the log10 value is rounded up to the nearest integer before casting to unsigned */ tmp = HDceil(HDlog10((double)f->shared->read_attempts)); f->shared->retries_nbins = (unsigned)tmp; |