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-rw-r--r--src/H5Fistore.c71
1 files changed, 48 insertions, 23 deletions
diff --git a/src/H5Fistore.c b/src/H5Fistore.c
index b997945..d506665 100644
--- a/src/H5Fistore.c
+++ b/src/H5Fistore.c
@@ -24,8 +24,9 @@ typedef enum H5F_isop_t {
#define PABLO_MASK H5F_istore_mask
-/* Is the interface initialized? */
+/* Interface initialization */
static hbool_t interface_initialize_g = FALSE;
+#define INTERFACE_INIT NULL
/* PRIVATE PROTOTYPES */
static size_t H5F_istore_sizeof_rkey (H5F_t *f, const void *_udata);
@@ -70,6 +71,7 @@ static herr_t H5F_istore_copy_hyperslab (H5F_t *f, const H5O_istore_t *istore,
* The storage file address is part of the B-tree and not part of the key.
*/
typedef struct H5F_istore_key_t {
+ uintn file_number; /*external file number */
size_t offset[H5O_ISTORE_NDIMS]; /*logical offset to start*/
size_t size[H5O_ISTORE_NDIMS]; /*logical chunk size */
} H5F_istore_key_t;
@@ -122,11 +124,16 @@ static size_t
H5F_istore_sizeof_rkey (H5F_t *f, const void *_udata)
{
const H5F_istore_ud1_t *udata = (const H5F_istore_ud1_t *)_udata;
+ size_t nbytes;
assert (udata);
assert (udata->mesg.ndims>0 && udata->mesg.ndims<=H5O_ISTORE_NDIMS);
- return udata->mesg.ndims * (4 + 4);
+ nbytes = 4 + /*external file number */
+ udata->mesg.ndims * 4 + /*dimension indices */
+ udata->mesg.ndims * 4; /*dimension sizes */
+
+ return nbytes;
}
@@ -154,16 +161,18 @@ H5F_istore_decode_key (H5F_t *f, H5B_t *bt, uint8 *raw, void *_key)
int i;
int ndims = bt->sizeof_rkey / 8;
- FUNC_ENTER (H5F_istore_decode_key, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_decode_key, FAIL);
/* check args */
assert (f);
assert (bt);
assert (raw);
assert (key);
- assert (ndims>0 && ndims<=H5O_ISTORE_NDIMS && 8*ndims==bt->sizeof_rkey);
+ assert (ndims>0 && ndims<=H5O_ISTORE_NDIMS);
/* decode */
+ UINT32DECODE (raw, key->file_number);
+ assert (0==key->file_number);
for (i=0; i<ndims; i++) {
UINT32DECODE (raw, key->offset[i]);
UINT32DECODE (raw, key->size[i]);
@@ -197,16 +206,18 @@ H5F_istore_encode_key (H5F_t *f, H5B_t *bt, uint8 *raw, void *_key)
intn ndims = bt->sizeof_rkey / 8;
intn i;
- FUNC_ENTER (H5F_istore_encode_key, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_encode_key, FAIL);
/* check args */
assert (f);
assert (bt);
assert (raw);
assert (key);
- assert (ndims>0 && ndims<=H5O_ISTORE_NDIMS && 8*ndims==bt->sizeof_rkey);
+ assert (ndims>0 && ndims<=H5O_ISTORE_NDIMS);
/* encode */
+ UINT32ENCODE (raw, key->file_number);
+ assert (0==key->file_number);
for (i=0; i<ndims; i++) {
UINT32ENCODE (raw, key->offset[i]);
UINT32ENCODE (raw, key->size[i]);
@@ -221,7 +232,8 @@ H5F_istore_encode_key (H5F_t *f, H5B_t *bt, uint8 *raw, void *_key)
*
* Purpose: Compares two keys sort of like strcmp(). The UDATA pointer
* is only to supply extra information not carried in the keys
- * (in this case, the dimensionality).
+ * (in this case, the dimensionality) and is not compared
+ * against the keys.
*
* Return: Success: -1 if LT_KEY is less than RT_KEY;
* 1 if LT_KEY is greater than RT_KEY;
@@ -244,13 +256,14 @@ H5F_istore_cmp2 (H5F_t *f, void *_lt_key, void *_udata, void *_rt_key)
H5F_istore_ud1_t *udata = (H5F_istore_ud1_t *)_udata;
intn cmp;
- FUNC_ENTER (H5F_istore_cmp2, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_cmp2, FAIL);
assert (lt_key);
assert (rt_key);
assert (udata);
assert (udata->mesg.ndims>0 && udata->mesg.ndims<=H5O_ISTORE_NDIMS);
-
+
+ /* Compare the offsets but ignore the other fields */
cmp = H5V_vector_cmp (udata->mesg.ndims, lt_key->offset, rt_key->offset);
FUNC_LEAVE (cmp);
@@ -294,7 +307,7 @@ H5F_istore_cmp3 (H5F_t *f, void *_lt_key, void *_udata, void *_rt_key)
H5F_istore_ud1_t *udata = (H5F_istore_ud1_t *)_udata;
intn cmp = 0;
- FUNC_ENTER (H5F_istore_cmp3, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_cmp3, FAIL);
assert (lt_key);
assert (rt_key);
@@ -343,7 +356,7 @@ H5F_istore_new_node (H5F_t *f, H5B_ins_t op,
size_t nbytes;
intn i;
- FUNC_ENTER (H5F_istore_new_node, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_new_node, FAIL);
/* check args */
assert (f);
@@ -361,6 +374,9 @@ H5F_istore_new_node (H5F_t *f, H5B_ins_t op,
HRETURN_ERROR (H5E_IO, H5E_CANTINIT, FAIL);
}
udata->addr = *addr;
+ udata->key.file_number = 0;
+ lt_key->file_number = udata->key.file_number;
+ if (H5B_INS_LEFT!=op) rt_key->file_number = 0;
/* Initialize the key(s) */
for (i=0; i<udata->mesg.ndims; i++) {
@@ -368,9 +384,9 @@ H5F_istore_new_node (H5F_t *f, H5B_ins_t op,
* The left key describes the storage of the UDATA chunk being inserted
* into the tree.
*/
+ assert (udata->key.size[i]>0);
lt_key->offset[i] = udata->key.offset[i];
lt_key->size[i] = udata->key.size[i];
- assert (udata->key.size[i]>0);
/*
* The right key might already be present. If not, then add
@@ -416,7 +432,7 @@ H5F_istore_found (H5F_t *f, const haddr_t *addr, const void *_lt_key,
const H5F_istore_key_t *lt_key = (const H5F_istore_key_t *)_lt_key;
int i;
- FUNC_ENTER (H5F_istore_found, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_found, FAIL);
/* Check arguments */
assert (f);
@@ -426,6 +442,8 @@ H5F_istore_found (H5F_t *f, const haddr_t *addr, const void *_lt_key,
/* Initialize return values */
udata->addr = *addr;
+ udata->key.file_number = lt_key->file_number;
+ assert (0==lt_key->file_number);
for (i=0; i<udata->mesg.ndims; i++) {
udata->key.offset[i] = lt_key->offset[i];
udata->key.size[i] = lt_key->size[i];
@@ -435,7 +453,6 @@ H5F_istore_found (H5F_t *f, const haddr_t *addr, const void *_lt_key,
FUNC_LEAVE (SUCCEED);
}
-
/*-------------------------------------------------------------------------
* Function: H5F_istore_insert
@@ -482,7 +499,7 @@ H5F_istore_insert (H5F_t *f, const haddr_t *addr,
H5B_ins_t ret_value = H5B_INS_ERROR;
size_t nbytes;
- FUNC_ENTER (H5F_istore_insert, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_insert, FAIL);
/* check args */
assert (f);
@@ -510,6 +527,7 @@ H5F_istore_insert (H5F_t *f, const haddr_t *addr,
* Already exists. Just return the info.
*/
udata->addr = *addr;
+ udata->key.file_number = lt_key->file_number;
ret_value = H5B_INS_NOOP;
} else if (H5V_hyper_disjointp (udata->mesg.ndims,
@@ -523,6 +541,7 @@ H5F_istore_insert (H5F_t *f, const haddr_t *addr,
* Split this node, inserting the new new node to the right of the
* current node. The MD_KEY is where the split occurs.
*/
+ md_key->file_number = udata->key.file_number;
for (i=0, nbytes=1; i<udata->mesg.ndims; i++) {
assert (0==udata->key.offset[i] % udata->mesg.alignment[i]);
assert (udata->key.size[i] == udata->mesg.alignment[i]);
@@ -538,6 +557,7 @@ H5F_istore_insert (H5F_t *f, const haddr_t *addr,
HRETURN_ERROR (H5E_IO, H5E_CANTINIT, FAIL);
}
udata->addr = *new_node;
+ udata->key.file_number = 0;
ret_value = H5B_INS_RIGHT;
} else {
@@ -600,7 +620,7 @@ H5F_istore_copy_hyperslab (H5F_t *f, const H5O_istore_t *istore, H5F_isop_t op,
herr_t status;
herr_t ret_value = FAIL;
- FUNC_ENTER (H5F_istore_copy_hyperslab, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_copy_hyperslab, FAIL);
/* check args */
assert (f);
@@ -644,6 +664,9 @@ H5F_istore_copy_hyperslab (H5F_t *f, const H5O_istore_t *istore, H5F_isop_t op,
/* Read/Write chunk or create it if it doesn't exist */
udata.mesg.ndims = istore->ndims;
+ H5F_addr_undef (&(udata.addr));
+ udata.key.file_number = 0;
+
for (i=0; i<istore->ndims; i++) {
/* The location and size of the chunk being accessed */
@@ -679,6 +702,7 @@ H5F_istore_copy_hyperslab (H5F_t *f, const H5O_istore_t *istore, H5F_isop_t op,
!H5V_vector_zerop (istore->ndims, offset_wrt_chunk) ||
!H5V_vector_eq (istore->ndims, sub_size, udata.key.size)) {
if (status>=0 && H5F_addr_defined (&(udata.addr))) {
+ assert (0==udata.key.file_number);
if (H5F_block_read (f, &(udata.addr), chunk_size, chunk)<0) {
HGOTO_ERROR (H5E_IO, H5E_READERROR, FAIL);
}
@@ -692,6 +716,7 @@ H5F_istore_copy_hyperslab (H5F_t *f, const H5O_istore_t *istore, H5F_isop_t op,
H5V_hyper_copy (istore->ndims, sub_size,
udata.key.size, offset_wrt_chunk, chunk,
size_m, sub_offset_m, buf);
+ assert (0==udata.key.file_number);
if (H5F_block_write (f, &(udata.addr), chunk_size, chunk)<0) {
HGOTO_ERROR (H5E_IO, H5E_WRITEERROR, FAIL);
}
@@ -738,7 +763,7 @@ herr_t
H5F_istore_read (H5F_t *f, const H5O_istore_t *istore,
const size_t offset[], const size_t size[], void *buf)
{
- FUNC_ENTER (H5F_istore_read, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_read, FAIL);
/* Check args */
assert (f);
@@ -778,7 +803,7 @@ herr_t
H5F_istore_write (H5F_t *f, const H5O_istore_t *istore,
const size_t offset[], const size_t size[], void *buf)
{
- FUNC_ENTER (H5F_istore_write, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_write, FAIL);
/* Check args */
assert (f);
@@ -799,7 +824,7 @@ H5F_istore_write (H5F_t *f, const H5O_istore_t *istore,
/*-------------------------------------------------------------------------
- * Function: H5F_istore_new
+ * Function: H5F_istore_create
*
* Purpose: Creates a new indexed-storage B-tree and initializes the
* istore struct with information about the storage. The
@@ -821,13 +846,13 @@ H5F_istore_write (H5F_t *f, const H5O_istore_t *istore,
*-------------------------------------------------------------------------
*/
herr_t
-H5F_istore_new (H5F_t *f, struct H5O_istore_t *istore,
- uintn ndims, const size_t alignment[])
+H5F_istore_create (H5F_t *f, struct H5O_istore_t *istore,
+ uintn ndims, const size_t alignment[])
{
H5F_istore_ud1_t udata;
int i;
- FUNC_ENTER (H5F_istore_new, NULL, FAIL);
+ FUNC_ENTER (H5F_istore_create, FAIL);
/* Check args */
assert (f);
@@ -841,7 +866,7 @@ H5F_istore_new (H5F_t *f, struct H5O_istore_t *istore,
#endif
udata.mesg.ndims = istore->ndims = ndims;
- if (H5B_new (f, H5B_ISTORE, &udata, &(istore->btree_addr)/*out*/)<0) {
+ if (H5B_create (f, H5B_ISTORE, &udata, &(istore->btree_addr)/*out*/)<0) {
HRETURN_ERROR (H5E_IO, H5E_CANTINIT, FAIL); /* Can't create B-tree */
}
generated by cgit v0.12 at 2024-11-18 17:14:59 (GMT)