summaryrefslogtreecommitdiffstats
path: root/src
diff options
context:
space:
mode:
Diffstat (limited to 'src')
-rw-r--r--src/H5Dchunk.c12
-rw-r--r--src/H5Dint.c27
-rw-r--r--src/H5Pdcpl.c7
-rw-r--r--src/H5S.c30
-rw-r--r--src/H5Spoint.c4
5 files changed, 45 insertions, 35 deletions
diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c
index e7a5bf1..64efc8a 100644
--- a/src/H5Dchunk.c
+++ b/src/H5Dchunk.c
@@ -378,8 +378,9 @@ done:
static herr_t
H5D_chunk_construct(H5F_t UNUSED *f, H5D_t *dset)
{
- const H5T_t *type = dset->shared->type; /* Convenience pointer to dataset's datatype */
- hsize_t max_dim[H5O_LAYOUT_NDIMS]; /* Maximum size of data in elements */
+ const H5T_t *type = dset->shared->type; /* Convenience pointer to dataset's datatype */
+ hsize_t max_dims[H5O_LAYOUT_NDIMS]; /* Maximum size of data in elements */
+ hsize_t dims[H5O_LAYOUT_NDIMS]; /* Dimension size of data in elements */
uint64_t chunk_size; /* Size of chunk in bytes */
int ndims; /* Rank of dataspace */
unsigned u; /* Local index variable */
@@ -413,7 +414,7 @@ H5D_chunk_construct(H5F_t UNUSED *f, H5D_t *dset)
dset->shared->layout.u.chunk.dim[dset->shared->layout.u.chunk.ndims - 1] = (uint32_t)H5T_GET_SIZE(type);
/* Get local copy of dataset dimensions (for sanity checking) */
- if(H5S_get_simple_extent_dims(dset->shared->space, NULL, max_dim) < 0)
+ if(H5S_get_simple_extent_dims(dset->shared->space, dims, max_dims) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to query maximum dimensions")
/* Sanity check dimensions */
@@ -424,9 +425,10 @@ H5D_chunk_construct(H5F_t UNUSED *f, H5D_t *dset)
/*
* The chunk size of a dimension with a fixed size cannot exceed
- * the maximum dimension size
+ * the maximum dimension size. If any dimension size is zero, there
+ * will be no such restriction.
*/
- if(max_dim[u] != H5S_UNLIMITED && max_dim[u] < dset->shared->layout.u.chunk.dim[u])
+ if(dims[u] && max_dims[u] != H5S_UNLIMITED && max_dims[u] < dset->shared->layout.u.chunk.dim[u])
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "chunk size must be <= maximum dimension size for fixed-sized dimensions")
} /* end for */
diff --git a/src/H5Dint.c b/src/H5Dint.c
index 40f262c..8c73888 100644
--- a/src/H5Dint.c
+++ b/src/H5Dint.c
@@ -1628,16 +1628,23 @@ H5D_alloc_storage(H5D_t *dset/*in,out*/, hid_t dxpl_id, H5D_time_alloc_t time_al
case H5D_COMPACT:
/* Check if space is already allocated */
if(NULL == layout->storage.u.compact.buf) {
- /* Reserve space in layout header message for the entire array. */
- HDassert(layout->storage.u.compact.size > 0);
- if(NULL == (layout->storage.u.compact.buf = H5MM_malloc(layout->storage.u.compact.size)))
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to allocate memory for compact dataset")
- if(!full_overwrite)
- HDmemset(layout->storage.u.compact.buf, 0, layout->storage.u.compact.size);
- layout->storage.u.compact.dirty = TRUE;
-
- /* Indicate that we should initialize storage space */
- must_init_space = TRUE;
+ /* Reserve space in layout header message for the entire array.
+ * Starting from the 1.8.7 release, we allow dataspace to have
+ * zero dimension size. So the storage size can be zero.
+ * SLU 2011/4/4 */
+ if(layout->storage.u.compact.size > 0) {
+ if(NULL == (layout->storage.u.compact.buf = H5MM_malloc(layout->storage.u.compact.size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to allocate memory for compact dataset")
+ if(!full_overwrite)
+ HDmemset(layout->storage.u.compact.buf, 0, layout->storage.u.compact.size);
+ layout->storage.u.compact.dirty = TRUE;
+
+ /* Indicate that we should initialize storage space */
+ must_init_space = TRUE;
+ } else {
+ layout->storage.u.compact.dirty = FALSE;
+ must_init_space = FALSE;
+ }
} /* end if */
break;
diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c
index d2aa8d5..6e20aed 100644
--- a/src/H5Pdcpl.c
+++ b/src/H5Pdcpl.c
@@ -966,6 +966,11 @@ done:
* Changed the way to check parameter and set property for
* generic property list.
*
+ * Raymond Lu
+ * 7 April 2011
+ * Starting from the 1.8.7 release, we allow dataspace to have
+ * zero dimension size. So the external storage size for
+ * dataset can be zero.
*-------------------------------------------------------------------------
*/
herr_t
@@ -985,8 +990,6 @@ H5Pset_external(hid_t plist_id, const char *name, off_t offset, hsize_t size)
HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "no name given")
if (offset<0)
HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "negative external file offset")
- if (size<=0)
- HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "zero size")
/* Get the plist structure */
if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_CREATE)))
diff --git a/src/H5S.c b/src/H5S.c
index e7cac9d..94fd72b 100644
--- a/src/H5S.c
+++ b/src/H5S.c
@@ -1160,14 +1160,17 @@ H5Sis_simple(hid_t space_id)
Christian Chilan 01/17/2007
Verifies that each element of DIMS is not equal to H5S_UNLIMITED.
+ Raymond Lu 03/30/2011
+ We allow 0-dimension for non-unlimited dimension starting from 1.8.7
+ release.
--------------------------------------------------------------------------*/
herr_t
H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/],
const hsize_t max[/*rank*/])
{
H5S_t *space; /* dataspace to modify */
- int u; /* local counting variable */
- herr_t ret_value=SUCCEED; /* Return value */
+ int u; /* local counting variable */
+ herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_API(H5Sset_extent_simple, FAIL)
H5TRACE4("e", "iIs*[a1]h*[a1]h", space_id, rank, dims, max);
@@ -1183,8 +1186,6 @@ H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/],
for (u=0; u<rank; u++) {
if (H5S_UNLIMITED==dims[u])
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "current dimension must have a specific size, not H5S_UNLIMITED")
- if (((max!=NULL && max[u]!=H5S_UNLIMITED) || max==NULL) && dims[u]==0)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid dimension size")
}
}
if (max!=NULL) {
@@ -1303,6 +1304,11 @@ done:
* Programmer: Quincey Koziol
* Tuesday, January 27, 1998
*
+ * Modification:
+ * Raymond Lu 03/30/2011
+ * We allow 0-dimension for non-unlimited dimension starting
+ * from 1.8.7 release.
+ *
*-------------------------------------------------------------------------
*/
hid_t
@@ -1332,17 +1338,9 @@ H5Screate_simple(int rank, const hsize_t dims[/*rank*/],
for(i = 0; i < rank; i++) {
if(H5S_UNLIMITED == dims[i])
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "current dimension must have a specific size, not H5S_UNLIMITED")
- if(maxdims) {
- if(H5S_UNLIMITED != maxdims[i] && maxdims[i]<dims[i])
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "maxdims is smaller than dims")
- if(H5S_UNLIMITED != maxdims[i] && dims[i] == 0)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "zero sized dimension for non-unlimited dimension")
- } /* end if */
- else {
- if(dims[i] == 0)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "zero sized dimension for non-unlimited dimension")
- } /* end else */
- } /* end else */
+ if(maxdims && H5S_UNLIMITED != maxdims[i] && maxdims[i]<dims[i])
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "maxdims is smaller than dims")
+ } /* end for */
/* Create the space and set the extent */
if(NULL == (space = H5S_create_simple((unsigned)rank,dims,maxdims)))
@@ -1906,7 +1904,7 @@ H5S_set_extent_real(H5S_t *space, const hsize_t *size)
/* Change the dataspace size & re-compute the number of elements in the extent */
for(u = 0, nelem = 1; u < space->extent.rank; u++ ) {
space->extent.size[u] = size[u];
- nelem *= space->extent.size[u];
+ nelem *= size[u];
} /* end for */
space->extent.nelem = nelem;
diff --git a/src/H5Spoint.c b/src/H5Spoint.c
index cb7e98f..e544371 100644
--- a/src/H5Spoint.c
+++ b/src/H5Spoint.c
@@ -1551,8 +1551,8 @@ herr_t
H5Sselect_elements(hid_t spaceid, H5S_seloper_t op, size_t num_elem,
const hsize_t *coord)
{
- H5S_t *space; /* Dataspace to modify selection of */
- herr_t ret_value; /* Return value */
+ H5S_t *space; /* Dataspace to modify selection of */
+ herr_t ret_value; /* Return value */
FUNC_ENTER_API(H5Sselect_elements, FAIL)
H5TRACE4("e", "iSsz*h", spaceid, op, num_elem, coord);
generated by cgit v0.12 at 2024-09-15 14:41:45 (GMT)