diff options
Diffstat (limited to 'src')
| -rw-r--r-- | src/H5Dchunk.c | 4 | ||||
| -rw-r--r-- | src/H5Dint.c | 2 | ||||
| -rw-r--r-- | src/H5Dmpio.c | 8 | ||||
| -rw-r--r-- | src/H5Ffake.c | 15 | ||||
| -rw-r--r-- | src/H5Fprivate.h | 2 | ||||
| -rw-r--r-- | src/H5Olayout.c | 25 | ||||
| -rw-r--r-- | src/H5P.c | 15 | ||||
| -rw-r--r-- | src/H5Pdapl.c | 8 | ||||
| -rw-r--r-- | src/H5Pdcpl.c | 41 | ||||
| -rw-r--r-- | src/H5Pdxpl.c | 28 | ||||
| -rw-r--r-- | src/H5Pencdec.c | 28 | ||||
| -rw-r--r-- | src/H5Pfapl.c | 22 | ||||
| -rw-r--r-- | src/H5Pfcpl.c | 16 | ||||
| -rw-r--r-- | src/H5Pgcpl.c | 8 | ||||
| -rw-r--r-- | src/H5Plapl.c | 17 | ||||
| -rw-r--r-- | src/H5Pocpl.c | 4 | ||||
| -rw-r--r-- | src/H5Ppkg.h | 16 | ||||
| -rw-r--r-- | src/H5Pprivate.h | 10 | ||||
| -rw-r--r-- | src/H5Ppublic.h | 2 | ||||
| -rw-r--r-- | src/H5Pstrcpl.c | 4 | ||||
| -rw-r--r-- | src/H5Rint.c | 4 | ||||
| -rw-r--r-- | src/H5S.c | 14 | ||||
| -rw-r--r-- | src/H5Sall.c | 24 | ||||
| -rw-r--r-- | src/H5Shyper.c | 345 | ||||
| -rw-r--r-- | src/H5Snone.c | 24 | ||||
| -rw-r--r-- | src/H5Spkg.h | 33 | ||||
| -rw-r--r-- | src/H5Spoint.c | 197 | ||||
| -rw-r--r-- | src/H5Sprivate.h | 18 | ||||
| -rw-r--r-- | src/H5Sselect.c | 13 | ||||
| -rw-r--r-- | src/H5T.c | 4 | ||||
| -rw-r--r-- | src/H5public.h | 6 |
31 files changed, 684 insertions, 273 deletions
diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index be3b678..f96abdd 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -2008,7 +2008,7 @@ H5D__chunk_file_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, coords_in_chunk[u] = coords[u] - (scaled[u] * fm->layout->u.chunk.dim[u]); /* Add point to file selection for chunk */ - if(H5S_select_elements(chunk_info->fspace, H5S_SELECT_APPEND, (size_t)1, coords_in_chunk) < 0) + if(H5S_select_elements(chunk_info->fspace, H5S_SELECT_APPEND, (hsize_t)1, coords_in_chunk) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "unable to select element") /* Increment the number of elemented selected in chunk */ @@ -2088,7 +2088,7 @@ H5D__chunk_mem_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, u } /* end else */ /* Move memory selection iterator to next element in selection */ - if(H5S_SELECT_ITER_NEXT(&fm->mem_iter, (size_t)1) < 0) + if(H5S_SELECT_ITER_NEXT(&fm->mem_iter, (hsize_t)1) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "unable to move to next iterator location") done: diff --git a/src/H5Dint.c b/src/H5Dint.c index fc191ff..17b989e 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -2561,7 +2561,7 @@ H5D__vlen_get_buf_size(void H5_ATTR_UNUSED *elem, hid_t type_id, unsigned H5_ATT HGOTO_ERROR(H5E_DATASET, H5E_NOSPACE, FAIL, "can't resize tbuf") /* Select point to read in */ - if(H5S_select_elements(vlen_bufsize->fspace, H5S_SELECT_SET, (size_t)1, point) < 0) + if(H5S_select_elements(vlen_bufsize->fspace, H5S_SELECT_SET, (hsize_t)1, point) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, FAIL, "can't select point") /* Read in the point (with the custom VL memory allocator) */ diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index 79572c0..94d763d 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -2859,6 +2859,7 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty int *send_displacements = NULL; int scatter_recvcount_int; int mpi_rank, mpi_size, mpi_code; + hid_t fapl_id = -1; /* File access property list for H5S_encode() */ herr_t ret_value = SUCCEED; FUNC_ENTER_STATIC @@ -2873,6 +2874,9 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty if ((mpi_size = H5F_mpi_get_size(io_info->dset->oloc.file)) < 0) HGOTO_ERROR(H5E_IO, H5E_MPI, FAIL, "unable to obtain mpi size") + if((fapl_id = H5F_get_access_plist(io_info->dset->oloc.file, FALSE)) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fapl") + if (*local_chunk_array_num_entries) if (NULL == (send_requests = (MPI_Request *) H5MM_malloc(*local_chunk_array_num_entries * sizeof(MPI_Request)))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate send requests buffer") @@ -2978,7 +2982,7 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty /* Determine size of serialized chunk file dataspace, plus the size of * the data being written */ - if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0) + if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size, fapl_id) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "unable to get encoded dataspace size") if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0) @@ -2991,7 +2995,7 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty /* Serialize the chunk's file dataspace into the buffer */ mod_data_p = mod_data[num_send_requests]; - if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0) + if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size, fapl_id) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "unable to encode dataspace") /* Intialize iterator for memory selection */ diff --git a/src/H5Ffake.c b/src/H5Ffake.c index 6072f2e..d199cf0 100644 --- a/src/H5Ffake.c +++ b/src/H5Ffake.c @@ -18,6 +18,8 @@ #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ #include "H5Fpkg.h" /* File access */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Pprivate.h" /* Property lists */ /* PRIVATE PROTOTYPES */ @@ -40,9 +42,10 @@ *------------------------------------------------------------------------- */ H5F_t * -H5F_fake_alloc(uint8_t sizeof_size) +H5F_fake_alloc(uint8_t sizeof_size, hid_t fapl_id) { H5F_t *f = NULL; /* Pointer to fake file struct */ + H5P_genplist_t *plist; /* Property list */ H5F_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -59,6 +62,16 @@ H5F_fake_alloc(uint8_t sizeof_size) else f->shared->sizeof_size = sizeof_size; + /* Set low/high bounds according to the setting in fapl_id */ + /* See H5F_new() in H5Fint.c */ + if(NULL == (plist = (H5P_genplist_t *)H5I_object(fapl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not file access property list") + + if(H5P_get(plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &(f->shared->low_bound)) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'low' bound for library format versions") + if(H5P_get(plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &(f->shared->high_bound)) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'high' bound for library format versions") + /* Set return value */ ret_value = f; diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index 856e618..dadbbac 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -827,7 +827,7 @@ H5_DLL void H5F_addr_decode_len(size_t addr_len, const uint8_t **pp, haddr_t *ad H5_DLL void H5F_sfile_assert_num(unsigned n); /* Routines for creating & destroying "fake" file structures */ -H5_DLL H5F_t *H5F_fake_alloc(uint8_t sizeof_size); +H5_DLL H5F_t *H5F_fake_alloc(uint8_t sizeof_size, hid_t fapl_id); H5_DLL herr_t H5F_fake_free(H5F_t *f); /* Superblock related routines */ diff --git a/src/H5Olayout.c b/src/H5Olayout.c index 553013c..2c4c4ce 100644 --- a/src/H5Olayout.c +++ b/src/H5Olayout.c @@ -552,10 +552,11 @@ done: static herr_t H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, const void *_mesg) { - const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg; - uint8_t *heap_block = NULL; + const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg; + uint8_t *heap_block = NULL; size_t *str_size = NULL; - unsigned u; + unsigned u; + H5F_libver_t saved_low, saved_high; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -572,6 +573,9 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, /* Layout class */ *p++ = mesg->type; + saved_low = H5F_LOW_BOUND(f); + saved_high = H5F_HIGH_BOUND(f); + /* Write out layout class specific information */ switch(mesg->type) { case H5D_COMPACT: @@ -683,6 +687,7 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, /* Note that we assume here that the contents of the heap block * cannot change! If this ever stops being the case we must change * this code to allow overwrites of the heap block. -NAF */ + if((mesg->storage.u.virt.serial_list_hobjid.addr == HADDR_UNDEF) && (mesg->storage.u.virt.list_nused > 0)) { uint8_t *heap_block_p; @@ -692,6 +697,9 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, uint32_t chksum; size_t i; + if(H5F_set_libver_bounds(f, H5F_LIBVER_V110, H5F_LIBVER_V110) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "cannot set low/high bounds") + /* Allocate array for caching results of strlen */ if(NULL == (str_size = (size_t *)H5MM_malloc(2 * mesg->storage.u.virt.list_nused *sizeof(size_t)))) HGOTO_ERROR(H5E_OHDR, H5E_RESOURCE, FAIL, "unable to allocate string length array") @@ -718,12 +726,12 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, block_size += str_size[(2 * i) + 1]; /* Source selection */ - if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_select)) < 0) + if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_select, f)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to check dataspace selection size") block_size += (size_t)select_serial_size; /* Virtual dataset selection */ - if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select)) < 0) + if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select, f)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to check dataspace selection size") block_size += (size_t)select_serial_size; } /* end for */ @@ -758,11 +766,11 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, heap_block_p += str_size[(2 * i) + 1]; /* Source selection */ - if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_select, &heap_block_p) < 0) + if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_select, &heap_block_p, f) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to serialize source selection") /* Virtual selection */ - if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select, &heap_block_p) < 0) + if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select, &heap_block_p, f) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to serialize virtual selection") } /* end for */ @@ -788,6 +796,9 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, } /* end switch */ done: + if(H5F_set_libver_bounds(f, saved_low, saved_high) < 0) + HDONE_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "cannot reset low/high bounds") + heap_block = (uint8_t *)H5MM_xfree(heap_block); str_size = (size_t *)H5MM_xfree(str_size); @@ -26,10 +26,11 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Ppkg.h" /* Property lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Ppkg.h" /* Property lists */ +#include "H5Fprivate.h" /* Files */ /****************/ /* Local Macros */ @@ -839,6 +840,10 @@ herr_t H5Pencode(hid_t plist_id, void *buf, size_t *nalloc) { H5P_genplist_t *plist; /* Property list to query */ + H5P_genplist_t *fapl_plist; + hid_t new_fapl_id; + H5F_libver_t low_bound = H5F_LIBVER_V110; + H5F_libver_t high_bound = H5F_LIBVER_V110; herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) @@ -849,7 +854,7 @@ H5Pencode(hid_t plist_id, void *buf, size_t *nalloc) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list"); /* Call the internal encode routine */ - if((ret_value = H5P__encode(plist, TRUE, buf, nalloc)) < 0) + if((ret_value = H5P__encode(plist, TRUE, buf, nalloc, H5P_FILE_ACCESS_DEFAULT)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to encode property list"); done: diff --git a/src/H5Pdapl.c b/src/H5Pdapl.c index da06297..ad2ae4c 100644 --- a/src/H5Pdapl.c +++ b/src/H5Pdapl.c @@ -121,7 +121,7 @@ static herr_t H5P__encode_chunk_cache_nbytes(const void *value, void **_pp, static herr_t H5P__decode_chunk_cache_nbytes(const void **_pp, void *_value); /* Property list callbacks */ -static herr_t H5P__dacc_vds_view_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dacc_vds_view_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dacc_vds_view_dec(const void **pp, void *value); static herr_t H5P__dapl_vds_file_pref_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dapl_vds_file_pref_get(hid_t prop_id, const char* name, size_t size, void* value); @@ -135,7 +135,7 @@ static herr_t H5P__dapl_vds_file_pref_close(const char* name, size_t size, void* /* Property list callbacks */ static herr_t H5P__dapl_efile_pref_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dapl_efile_pref_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__dapl_efile_pref_dec(const void **_pp, void *value); static herr_t H5P__dapl_efile_pref_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dapl_efile_pref_copy(const char* name, size_t size, void* value); @@ -562,7 +562,7 @@ H5P__dapl_efile_pref_get(hid_t H5_ATTR_UNUSED prop_id, const char H5_ATTR_UNUSED *------------------------------------------------------------------------- */ static herr_t -H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size) +H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const char *efile_pref = *(const char * const *)value; uint8_t **pp = (uint8_t **)_pp; @@ -1157,7 +1157,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dacc_vds_view_enc(const void *value, void **_pp, size_t *size) +H5P__dacc_vds_view_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5D_vds_view_t *view = (const H5D_vds_view_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 894f6cb..76a2658 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -146,7 +146,7 @@ static herr_t H5P__dcrt_reg_prop(H5P_genclass_t *pclass); /* Property callbacks */ static herr_t H5P__dcrt_layout_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_layout_get(hid_t prop_id, const char *name, size_t size, void *value); -static herr_t H5P__dcrt_layout_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dcrt_layout_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dcrt_layout_dec(const void **pp, void *value); static herr_t H5P__dcrt_layout_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_layout_copy(const char *name, size_t size, void *value); @@ -154,14 +154,14 @@ static int H5P__dcrt_layout_cmp(const void *value1, const void *value2, size_t s static herr_t H5P__dcrt_layout_close(const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_get(hid_t prop_id, const char *name, size_t size, void *value); -static herr_t H5P__dcrt_fill_value_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dcrt_fill_value_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dcrt_fill_value_dec(const void **pp, void *value); static herr_t H5P__dcrt_fill_value_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_copy(const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_close(const char *name, size_t size, void *value); static herr_t H5P__dcrt_ext_file_list_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_ext_file_list_get(hid_t prop_id, const char *name, size_t size, void *value); -static herr_t H5P__dcrt_ext_file_list_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dcrt_ext_file_list_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dcrt_ext_file_list_dec(const void **pp, void *value); static herr_t H5P__dcrt_ext_file_list_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_ext_file_list_copy(const char *name, size_t size, void *value); @@ -366,21 +366,41 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) +H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size, void *_udata) { const H5O_layout_t *layout = (const H5O_layout_t *)value; /* Create local aliases for values */ + H5P_enc_cb_info_t *udata = (H5P_enc_cb_info_t *)_udata; /* User data for encode callback */ uint8_t **pp = (uint8_t **)_pp; uint8_t *tmp_p; size_t tmp_size; size_t u; /* Local index variable */ + H5P_genplist_t *fapl_plist; /* The file access property list */ + hid_t new_fapl_id; /* The file access property list ID */ + H5F_libver_t low_bound = H5F_LIBVER_V110; /* Set the low bound in fapl to latest */ + H5F_libver_t high_bound = H5F_LIBVER_V110; /* Set the high bound in fapl to latest */ herr_t ret_value = SUCCEED; /* Return value */ + FUNC_ENTER_STATIC /* Sanity check */ HDassert(layout); HDassert(size); + /* Make a copy of the default file access property list */ + if(NULL == (fapl_plist = (H5P_genplist_t *)H5I_object(H5P_LST_FILE_ACCESS_ID_g))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") + + /* Set latest format in fapl_plist */ + /* This will eventually be used by VDS to encode datasets via H5S_encode() */ + if(H5P_set(fapl_plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &low_bound) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'low' bound for library format versions") + if(H5P_set(fapl_plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &high_bound) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'high' bound for library format versions") + + if((new_fapl_id = H5P_copy_plist(fapl_plist, FALSE)) < 0) + HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "can't copy file access property list") + if(NULL != *pp) { /* Encode layout type */ *(*pp)++ = (uint8_t)layout->type; @@ -426,14 +446,15 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) * list before we get here. */ tmp_size = (size_t)-1; tmp_p = *pp; - if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size) < 0) + + if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection") *size += (size_t)(*pp - tmp_p); /* Virtual dataset selection. Same notes as above apply. */ tmp_size = (size_t)-1; tmp_p = *pp; - if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, pp, &tmp_size) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, pp, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection") *size += (size_t)(*pp - tmp_p); } /* end for */ @@ -466,14 +487,14 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) /* Source selection */ tmp_size = (size_t)0; tmp_p = NULL; - if(H5S_encode(layout->storage.u.virt.list[u].source_select, &tmp_p, &tmp_size) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_select, &tmp_p, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection") *size += tmp_size; /* Virtual dataset selection */ tmp_size = (size_t)0; tmp_p = NULL; - if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, &tmp_p, &tmp_size) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, &tmp_p, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection") *size += tmp_size; } /* end for */ @@ -979,7 +1000,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dcrt_fill_value_enc(const void *value, void **_pp, size_t *size) +H5P__dcrt_fill_value_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_fill_t *fill = (const H5O_fill_t *)value; /* Create local aliases for values */ size_t dt_size = 0; /* Size of encoded datatype */ @@ -1382,7 +1403,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dcrt_ext_file_list_enc(const void *value, void **_pp, size_t *size) +H5P__dcrt_ext_file_list_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_efl_t *efl = (const H5O_efl_t *)value; /* Create local aliases for values */ size_t len = 0; /* String length of slot name */ diff --git a/src/H5Pdxpl.c b/src/H5Pdxpl.c index 3c53c15..c815542 100644 --- a/src/H5Pdxpl.c +++ b/src/H5Pdxpl.c @@ -212,21 +212,21 @@ static herr_t H5P__dxfr_reg_prop(H5P_genclass_t *pclass); /* Property list callbacks */ -static herr_t H5P__dxfr_bkgr_buf_type_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_bkgr_buf_type_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_bkgr_buf_type_dec(const void **pp, void *value); -static herr_t H5P__dxfr_btree_split_ratio_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_btree_split_ratio_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_btree_split_ratio_dec(const void **pp, void *value); -static herr_t H5P__dxfr_io_xfer_mode_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_io_xfer_mode_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_io_xfer_mode_dec(const void **pp, void *value); -static herr_t H5P__dxfr_mpio_collective_opt_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_mpio_collective_opt_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_mpio_collective_opt_dec(const void **pp, void *value); -static herr_t H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_mpio_chunk_opt_hard_dec(const void **pp, void *value); -static herr_t H5P__dxfr_edc_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_edc_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_edc_dec(const void **pp, void *value); static herr_t H5P__dxfr_xform_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dxfr_xform_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__dxfr_xform_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_xform_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_xform_dec(const void **pp, void *value); static herr_t H5P__dxfr_xform_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dxfr_xform_copy(const char* name, size_t size, void* value); @@ -559,7 +559,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_bkgr_buf_type_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_bkgr_buf_type_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5T_bkg_t *bkgr_buf_type = (const H5T_bkg_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -632,7 +632,7 @@ H5P__dxfr_bkgr_buf_type_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_btree_split_ratio_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_btree_split_ratio_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const double *btree_split_ratio = (const double *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -793,7 +793,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_xform_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_xform_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5Z_data_xform_t *data_xform_prop = *(const H5Z_data_xform_t * const *)value; /* Create local alias for values */ const char *pexp = NULL; /* Pointer to transform expression */ @@ -1881,7 +1881,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_io_xfer_mode_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_io_xfer_mode_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mpio_xfer_t *xfer_mode = (const H5FD_mpio_xfer_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1954,7 +1954,7 @@ H5P__dxfr_io_xfer_mode_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_mpio_collective_opt_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_mpio_collective_opt_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mpio_collective_opt_t *coll_opt = (const H5FD_mpio_collective_opt_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -2027,7 +2027,7 @@ H5P__dxfr_mpio_collective_opt_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mpio_chunk_opt_t *chunk_opt = (const H5FD_mpio_chunk_opt_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -2212,7 +2212,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_edc_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_edc_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5Z_EDC_t *check = (const H5Z_EDC_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pencdec.c b/src/H5Pencdec.c index 73c48d7..3332098 100644 --- a/src/H5Pencdec.c +++ b/src/H5Pencdec.c @@ -49,9 +49,10 @@ /* Typedef for iterator when encoding a property list */ typedef struct { - hbool_t encode; /* Whether the property list should be encoded */ - size_t *enc_size_ptr; /* Pointer to size of encoded buffer */ - void **pp; /* Pointer to encoding buffer pointer */ + hbool_t encode; /* Whether the property list should be encoded */ + size_t *enc_size_ptr; /* Pointer to size of encoded buffer */ + void **pp; /* Pointer to encoding buffer pointer */ + hid_t fapl_id; /* File access property list */ } H5P_enc_iter_ud_t; @@ -90,7 +91,7 @@ typedef struct { *------------------------------------------------------------------------- */ herr_t -H5P__encode_size_t(const void *value, void **_pp, size_t *size) +H5P__encode_size_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint64_t enc_value = (uint64_t)*(const size_t *)value; /* Property value to encode */ uint8_t **pp = (uint8_t **)_pp; @@ -132,7 +133,7 @@ H5P__encode_size_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_hsize_t(const void *value, void **_pp, size_t *size) +H5P__encode_hsize_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint64_t enc_value = (uint64_t)*(const hsize_t *)value; /* Property value to encode */ unsigned enc_size = H5VM_limit_enc_size(enc_value); /* Size of encoded property */ @@ -173,7 +174,7 @@ H5P__encode_hsize_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_unsigned(const void *value, void **_pp, size_t *size) +H5P__encode_unsigned(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -212,7 +213,7 @@ H5P__encode_unsigned(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_uint8_t(const void *value, void **_pp, size_t *size) +H5P__encode_uint8_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -248,7 +249,7 @@ H5P__encode_uint8_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_hbool_t(const void *value, void **_pp, size_t *size) +H5P__encode_hbool_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -283,7 +284,7 @@ H5P__encode_hbool_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_double(const void *value, void **_pp, size_t *size) +H5P__encode_double(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -332,7 +333,8 @@ static int H5P__encode_cb(H5P_genprop_t *prop, void *_udata) { H5P_enc_iter_ud_t *udata = (H5P_enc_iter_ud_t *)_udata; /* Pointer to user data */ - int ret_value = H5_ITER_CONT; /* Return value */ + H5P_enc_cb_info_t cb_udata; /* User data for property iteration callback */ + int ret_value = H5_ITER_CONT; /* Return value */ FUNC_ENTER_STATIC @@ -355,7 +357,8 @@ H5P__encode_cb(H5P_genprop_t *prop, void *_udata) /* Encode (or not, if *(udata->pp) is NULL) the property value */ prop_value_len = 0; - if((prop->encode)(prop->value, udata->pp, &prop_value_len) < 0) + cb_udata.fapl_id = udata->fapl_id; + if((prop->encode)(prop->value, udata->pp, &prop_value_len, &cb_udata) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, H5_ITER_ERROR, "property encoding routine failed") *(udata->enc_size_ptr) += prop_value_len; } /* end if */ @@ -390,7 +393,7 @@ done: --------------------------------------------------------------------------*/ herr_t H5P__encode(const H5P_genplist_t *plist, hbool_t enc_all_prop, void *buf, - size_t *nalloc) + size_t *nalloc, hid_t fapl_id) { H5P_enc_iter_ud_t udata; /* User data for property iteration callback */ uint8_t *p = (uint8_t *)buf; /* Temporary pointer to encoding buffer */ @@ -425,6 +428,7 @@ H5P__encode(const H5P_genplist_t *plist, hbool_t enc_all_prop, void *buf, udata.encode = encode; udata.enc_size_ptr = &encode_size; udata.pp = (void **)&p; + udata.fapl_id = fapl_id; /* Iterate over all properties in property list, encoding them */ idx = 0; diff --git a/src/H5Pfapl.c b/src/H5Pfapl.c index 148c247..13409d2 100644 --- a/src/H5Pfapl.c +++ b/src/H5Pfapl.c @@ -289,18 +289,18 @@ static int H5P__facc_file_image_info_cmp(const void *value1, const void *value2, static herr_t H5P__facc_file_image_info_close(const char *name, size_t size, void *value); /* encode & decode callbacks */ -static herr_t H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_cache_config_dec(const void **_pp, void *value); static int H5P__facc_cache_config_cmp(const void *value1, const void *value2, size_t size); -static herr_t H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_fclose_degree_dec(const void **pp, void *value); -static herr_t H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_multi_type_dec(const void **_pp, void *value); static herr_t H5P__facc_libver_type_enc(const void *value, void **_pp, size_t *size); static herr_t H5P__facc_libver_type_dec(const void **_pp, void *value); /* Metadata cache log location property callbacks */ -static herr_t H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P_facc_mdc_log_location_dec(const void **_pp, void *value); static herr_t H5P_facc_mdc_log_location_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P_facc_mdc_log_location_copy(const char *name, size_t size, void *value); @@ -309,7 +309,7 @@ static herr_t H5P_facc_mdc_log_location_close(const char *name, size_t size, voi /* Metadata cache image property callbacks */ static int H5P__facc_cache_image_config_cmp(const void *_config1, const void *_config2, size_t H5_ATTR_UNUSED size); -static herr_t H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_cache_image_config_dec(const void **_pp, void *_value); @@ -2998,7 +2998,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size) +H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5AC_cache_image_config_t *config = (const H5AC_cache_image_config_t *)value; /* Create local aliases for value */ uint8_t **pp = (uint8_t **)_pp; @@ -3424,7 +3424,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size) +H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5AC_cache_config_t *config = (const H5AC_cache_config_t *)value; /* Create local aliases for values */ uint8_t **pp = (uint8_t **)_pp; @@ -3704,7 +3704,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size) +H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5F_close_degree_t *fclose_degree = (const H5F_close_degree_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -3777,7 +3777,7 @@ H5P__facc_fclose_degree_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size) +H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mem_t *type = (const H5FD_mem_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -4277,7 +4277,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size) +H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const char *log_location = *(const char * const *)value; uint8_t **pp = (uint8_t **)_pp; @@ -4577,7 +4577,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size) +H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5P_coll_md_read_flag_t *coll_md_read_flag = (const H5P_coll_md_read_flag_t *)value; uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pfcpl.c b/src/H5Pfcpl.c index 6b0d2c0..720c526 100644 --- a/src/H5Pfcpl.c +++ b/src/H5Pfcpl.c @@ -132,13 +132,13 @@ static herr_t H5P_fcrt_reg_prop(H5P_genclass_t *pclass); /* property callbacks */ -static herr_t H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_btree_rank_dec(const void **_pp, void *value); -static herr_t H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_shmsg_index_types_dec(const void **_pp, void *value); -static herr_t H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_shmsg_index_minsize_dec(const void **_pp, void *value); -static herr_t H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_fspace_strategy_dec(const void **_pp, void *_value); @@ -722,7 +722,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const unsigned *btree_k = (const unsigned *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1013,7 +1013,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const unsigned *type_flags = (const unsigned *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1106,7 +1106,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const unsigned *minsizes = (const unsigned *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1388,7 +1388,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5F_fspace_strategy_t *strategy = (const H5F_fspace_strategy_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pgcpl.c b/src/H5Pgcpl.c index 6f1fab1..a719616 100644 --- a/src/H5Pgcpl.c +++ b/src/H5Pgcpl.c @@ -69,9 +69,9 @@ static herr_t H5P__gcrt_reg_prop(H5P_genclass_t *pclass); /* Property callbacks */ -static herr_t H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__gcrt_group_info_dec(const void **_pp, void *value); -static herr_t H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__gcrt_link_info_dec(const void **_pp, void *value); @@ -546,7 +546,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size) +H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_ginfo_t *ginfo = (const H5O_ginfo_t *)value; /* Create local aliases for values */ uint8_t **pp = (uint8_t **)_pp; @@ -634,7 +634,7 @@ H5P__gcrt_group_info_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size) +H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_linfo_t *linfo = (const H5O_linfo_t *)value; /* Create local aliases for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Plapl.c b/src/H5Plapl.c index 18b81ac..4a95991 100644 --- a/src/H5Plapl.c +++ b/src/H5Plapl.c @@ -114,7 +114,7 @@ static herr_t H5P__lacc_reg_prop(H5P_genclass_t *pclass); /* Property list callbacks */ static herr_t H5P__lacc_elink_pref_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_pref_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__lacc_elink_pref_dec(const void **_pp, void *value); static herr_t H5P__lacc_elink_pref_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_pref_copy(const char* name, size_t size, void* value); @@ -122,7 +122,7 @@ static int H5P__lacc_elink_pref_cmp(const void *value1, const void *value2, size static herr_t H5P__lacc_elink_pref_close(const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_fapl_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_fapl_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__lacc_elink_fapl_dec(const void **_pp, void *value); static herr_t H5P__lacc_elink_fapl_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_fapl_copy(const char* name, size_t size, void* value); @@ -338,13 +338,14 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size) +H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size, void *_udata) { - const hid_t *elink_fapl = (const hid_t *)value; /* Property to encode */ + const hid_t *elink_fapl = (const hid_t *)value; /* Property to encode */ uint8_t **pp = (uint8_t **)_pp; + H5P_enc_cb_info_t *udata = (H5P_enc_cb_info_t *)_udata; /* User data for encode callback */ H5P_genplist_t *fapl_plist; /* Pointer to property list */ hbool_t non_default_fapl = FALSE; /* Whether the FAPL is non-default */ - size_t fapl_size = 0; /* FAPL's encoded size */ + size_t fapl_size = 0; /* FAPL's encoded size */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -364,7 +365,7 @@ H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size) /* Encode the property list, if non-default */ /* (if *pp == NULL, will only compute the size) */ if(non_default_fapl) { - if(H5P__encode(fapl_plist, TRUE, NULL, &fapl_size) < 0) + if(H5P__encode(fapl_plist, TRUE, NULL, &fapl_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "can't encode property list") if(*pp) { @@ -379,7 +380,7 @@ H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size) UINT64ENCODE_VAR(*pp, enc_value, enc_size); /* encode the plist */ - if(H5P__encode(fapl_plist, TRUE, *pp, &fapl_size) < 0) + if(H5P__encode(fapl_plist, TRUE, *pp, &fapl_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "can't encode property list") *pp += fapl_size; @@ -688,7 +689,7 @@ H5P__lacc_elink_pref_get(hid_t H5_ATTR_UNUSED prop_id, const char H5_ATTR_UNUSED *------------------------------------------------------------------------- */ static herr_t -H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size) +H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const char *elink_pref = *(const char * const *)value; uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pocpl.c b/src/H5Pocpl.c index be41e32..b3c472e 100644 --- a/src/H5Pocpl.c +++ b/src/H5Pocpl.c @@ -90,7 +90,7 @@ static herr_t H5P__ocrt_reg_prop(H5P_genclass_t *pclass); /* Property callbacks */ -static herr_t H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__ocrt_pipeline_dec(const void **_pp, void *value); static herr_t H5P__ocrt_pipeline_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__ocrt_pipeline_get(hid_t prop_id, const char *name, size_t size, void *value); @@ -1459,7 +1459,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size) +H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_pline_t *pline = (const H5O_pline_t *)value; uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Ppkg.h b/src/H5Ppkg.h index 13463ae..2cf1342 100644 --- a/src/H5Ppkg.h +++ b/src/H5Ppkg.h @@ -176,21 +176,21 @@ H5_DLL hid_t H5P__new_plist_of_type(H5P_plist_type_t type); /* Encode/decode routines */ H5_DLL herr_t H5P__encode(const H5P_genplist_t *plist, hbool_t enc_all_prop, - void *buf, size_t *nalloc); + void *buf, size_t *nalloc, hid_t fapl_id); H5_DLL hid_t H5P__decode(const void *buf); -H5_DLL herr_t H5P__encode_hsize_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_size_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_unsigned(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_uint8_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_hbool_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_double(const void *value, void **_pp, size_t *size); +H5_DLL herr_t H5P__encode_hsize_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_size_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_unsigned(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_uint8_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_hbool_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_double(const void *value, void **_pp, size_t *size, void *udat); H5_DLL herr_t H5P__decode_hsize_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_size_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_unsigned(const void **_pp, void *value); H5_DLL herr_t H5P__decode_uint8_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_hbool_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_double(const void **_pp, void *value); -H5_DLL herr_t H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size); +H5_DLL herr_t H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size, void *udata); H5_DLL herr_t H5P__decode_coll_md_read_flag_t(const void **_pp, void *value); /* Private OCPL routines */ diff --git a/src/H5Pprivate.h b/src/H5Pprivate.h index 374c117..33847e6 100644 --- a/src/H5Pprivate.h +++ b/src/H5Pprivate.h @@ -84,6 +84,16 @@ typedef enum H5P_plist_type_t { /* Function pointer for library classes with properties to register */ typedef herr_t (*H5P_reg_prop_func_t)(H5P_genclass_t *pclass); +/* Move encode/decode callback typedefs from H5Ppublic.h: not exposed to user */ +/* Add a parameter to encode callback */ +typedef herr_t (*H5P_prp_encode_func_t)(const void *value, void **buf, size_t *size, void *udata); +typedef herr_t (*H5P_prp_decode_func_t)(const void **buf, void *value); + +/* User data passed to encode callback */ +typedef struct H5P_enc_cb_info_t { + hid_t fapl_id; /* File access property list */ +} H5P_enc_cb_info_t; + /* * Each library property list class has a variable of this type that contains * class variables and methods used to initialize the class. diff --git a/src/H5Ppublic.h b/src/H5Ppublic.h index a2c0418..77aa816 100644 --- a/src/H5Ppublic.h +++ b/src/H5Ppublic.h @@ -116,8 +116,6 @@ typedef herr_t (*H5P_prp_cb2_t)(hid_t prop_id, const char *name, size_t size, vo typedef H5P_prp_cb1_t H5P_prp_create_func_t; typedef H5P_prp_cb2_t H5P_prp_set_func_t; typedef H5P_prp_cb2_t H5P_prp_get_func_t; -typedef herr_t (*H5P_prp_encode_func_t)(const void *value, void **buf, size_t *size); -typedef herr_t (*H5P_prp_decode_func_t)(const void **buf, void *value); typedef H5P_prp_cb2_t H5P_prp_delete_func_t; typedef H5P_prp_cb1_t H5P_prp_copy_func_t; typedef int (*H5P_prp_compare_func_t)(const void *value1, const void *value2, size_t size); diff --git a/src/H5Pstrcpl.c b/src/H5Pstrcpl.c index fb91356..b84d69b 100644 --- a/src/H5Pstrcpl.c +++ b/src/H5Pstrcpl.c @@ -69,7 +69,7 @@ static herr_t H5P__strcrt_reg_prop(H5P_genclass_t *pclass); /* encode & decode callbacks */ -static herr_t H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__strcrt_char_encoding_dec(const void **_pp, void *value); @@ -227,7 +227,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size) +H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5T_cset_t *encoding = (const H5T_cset_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Rint.c b/src/H5Rint.c index 716a573..d9669c5 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -289,7 +289,7 @@ H5R_create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, H5 HDmemset(ref, 0, H5R_DSET_REG_REF_BUF_SIZE); /* Get the amount of space required to serialize the selection */ - if ((buf_size = H5S_SELECT_SERIAL_SIZE(space)) < 0) + if ((buf_size = H5S_SELECT_SERIAL_SIZE(space, loc->oloc->file)) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTINIT, FAIL, "Invalid amount of space for serializing selection") /* Increase buffer size to allow for the dataset OID */ @@ -305,7 +305,7 @@ H5R_create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, H5 H5F_addr_encode(loc->oloc->file, &p, obj_loc.oloc->addr); /* Serialize the selection into heap buffer */ - if (H5S_SELECT_SERIALIZE(space, &p) < 0) + if (H5S_SELECT_SERIALIZE(space, &p, loc->oloc->file) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Unable to serialize selection") /* Save the serialized buffer for later */ @@ -1554,7 +1554,7 @@ H5Sencode(hid_t obj_id, void *buf, size_t *nalloc) if (NULL == (dspace = (H5S_t *)H5I_object_verify(obj_id, H5I_DATASPACE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") - if(H5S_encode(dspace, (unsigned char **)&buf, nalloc)<0) + if(H5S_encode(dspace, (unsigned char **)&buf, nalloc, H5P_FILE_ACCESS_DEFAULT)<0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode dataspace") done: @@ -1579,7 +1579,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) +H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc, hid_t fapl_id) { H5F_t *f = NULL; /* Fake file structure*/ size_t extent_size; /* Size of serialized dataspace extent */ @@ -1590,7 +1590,7 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) FUNC_ENTER_NOAPI_NOINIT /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc((uint8_t)0))) + if(NULL == (f = H5F_fake_alloc((uint8_t)0, fapl_id))) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") /* Find out the size of buffer needed for extent */ @@ -1598,7 +1598,7 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size") /* Find out the size of buffer needed for selection */ - if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj)) < 0) + if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj, f)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size") H5_CHECKED_ASSIGN(select_size, size_t, sselect_size, hssize_t); @@ -1628,7 +1628,7 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) /* Encode the selection part of dataspace. */ *p = pp; - if(H5S_SELECT_SERIALIZE(obj, p) < 0) + if(H5S_SELECT_SERIALIZE(obj, p, f) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode select space") } /* end else */ @@ -1722,8 +1722,8 @@ H5S_decode(const unsigned char **p) sizeof_size = *pp++; /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc(sizeof_size))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") + if(NULL == (f = H5F_fake_alloc(sizeof_size, H5P_FILE_ACCESS_DEFAULT))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") /* Decode size of extent information */ UINT32DECODE(pp, extent_size); diff --git a/src/H5Sall.c b/src/H5Sall.c index 710727b..98d7319 100644 --- a/src/H5Sall.c +++ b/src/H5Sall.c @@ -36,8 +36,8 @@ static herr_t H5S_all_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_all_release(H5S_t *space); static htri_t H5S_all_is_valid(const H5S_t *space); -static hssize_t H5S_all_serial_size(const H5S_t *space); -static herr_t H5S_all_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_all_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_all_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_all_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_all_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -56,7 +56,7 @@ static herr_t H5S_all_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); static herr_t H5S_all_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_all_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_all_iter_has_next_block(const H5S_sel_iter_t *iter); -static herr_t H5S_all_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_all_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_all_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_all_iter_release(H5S_sel_iter_t *sel_iter); @@ -276,7 +276,7 @@ H5S_all_iter_has_next_block (const H5S_sel_iter_t H5_ATTR_UNUSED *iter) USAGE herr_t H5S_all_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN: Pointer to selection iterator - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -287,7 +287,7 @@ H5S_all_iter_has_next_block (const H5S_sel_iter_t H5_ATTR_UNUSED *iter) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_all_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_all_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -465,8 +465,9 @@ H5S_all_is_valid (const H5S_t H5_ATTR_UNUSED *space) Determine the number of bytes needed to store the serialized "all" selection information. USAGE - hssize_t H5S_all_serial_size(space) + hssize_t H5S_all_serial_size(space, f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -478,7 +479,7 @@ H5S_all_is_valid (const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space) +H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space, H5F_t H5_ATTR_UNUSED *f) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -498,11 +499,12 @@ H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_all_serialize(space, p) + herr_t H5S_all_serialize(space, p, f) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -514,7 +516,7 @@ H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_all_serialize(const H5S_t *space, uint8_t **p) +H5S_all_serialize(const H5S_t *space, uint8_t **p, H5F_t H5_ATTR_UNUSED *f) { uint8_t *pp = (*p); /* Local pointer for decoding */ @@ -526,8 +528,8 @@ H5S_all_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ diff --git a/src/H5Shyper.c b/src/H5Shyper.c index 9263cd8..94b600d 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -28,6 +28,13 @@ #include "H5Spkg.h" /* Dataspace functions */ #include "H5VMprivate.h" /* Vector functions */ +/* Format version bounds for dataspace hyperslab selection */ +const unsigned H5O_sds_hyper_ver_bounds[] = { + H5S_HYPER_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5S_HYPER_VERSION_1, /* H5F_LIBVER_V18 */ + H5S_HYPER_VERSION_2 /* H5F_LIBVER_LATEST */ +}; + /* Local datatypes */ /* Static function prototypes */ @@ -55,8 +62,8 @@ static herr_t H5S_hyper_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_hyper_release(H5S_t *space); static htri_t H5S_hyper_is_valid(const H5S_t *space); -static hssize_t H5S_hyper_serial_size(const H5S_t *space); -static herr_t H5S_hyper_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_hyper_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_hyper_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_hyper_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_hyper_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -77,7 +84,7 @@ static herr_t H5S_hyper_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) static herr_t H5S_hyper_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_hyper_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_hyper_iter_has_next_block(const H5S_sel_iter_t *sel_iter); -static herr_t H5S_hyper_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_hyper_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_hyper_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_hyper_iter_release(H5S_sel_iter_t *sel_iter); @@ -664,7 +671,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5S_hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_hyper_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { unsigned ndims; /* Number of dimensions of dataset */ int fast_dim; /* Rank of the fastest changing dimension for the dataspace */ @@ -714,14 +721,14 @@ H5S_hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) temp_dim=fast_dim; while(temp_dim>=0) { if(temp_dim==fast_dim) { - size_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ + hsize_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ hsize_t block_elem; /* Number of elements left in a block */ /* Compute the number of elements left in block */ block_elem=tdiminfo[temp_dim].block-iter_offset[temp_dim]; /* Compute the number of actual elements to advance */ - actual_elem=(size_t)MIN(nelem,block_elem); + actual_elem=MIN(nelem,block_elem); /* Move the iterator over as many elements as possible */ iter_offset[temp_dim]+=actual_elem; @@ -785,14 +792,14 @@ H5S_hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) /* Increment absolute position */ if(curr_dim==fast_dim) { - size_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ + hsize_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ hsize_t span_elem; /* Number of elements left in a span */ /* Compute the number of elements left in block */ span_elem=(curr_span->high-abs_arr[curr_dim])+1; /* Compute the number of actual elements to advance */ - actual_elem=(size_t)MIN(nelem,span_elem); + actual_elem=MIN(nelem,span_elem); /* Move the iterator over as many elements as possible */ abs_arr[curr_dim]+=actual_elem; @@ -1941,13 +1948,140 @@ done: /*-------------------------------------------------------------------------- NAME + H5S_hyper_set_offset_size + PURPOSE + Determine the offset size (4 or 8 bytes) to use for encoding hyperslab selection info + USAGE + hssize_t H5S_hyper_set_offset_size(space, block_count, bounds_end, version, offset_size) + const H5S_t *space: IN: The maximum size of the hyperslab selection info + hsize_t block_count: IN: The number of blocks in the selection + hsize_t bounds_end: IN: The selection high bounds + uint32_t version: IN: The version used for encoding + uint8_t *offset_size: OUT: The offset size + + RETURNS + The offset size + DESCRIPTION + Determine the offset size for encoding hyperslab selection info based on the + the input parameter "version". This is for release 1.10. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_hyper_set_offset_size(const H5S_t *space, hsize_t block_count, hsize_t bounds_end[], uint32_t version, uint8_t *offset_size) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI_NOINIT + + switch(version) { + case H5S_HYPER_VERSION_1: + *offset_size = H5S_INFO_SIZE_4; + break; + + case H5S_HYPER_VERSION_2: + *offset_size = H5S_INFO_SIZE_8; + break; + + default: + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper offset size") + break; + } + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5S_hyper_set_offset_size() */ + + +/*-------------------------------------------------------------------------- + NAME + H5S_hyper_set_version + PURPOSE + Determine the version to use for encoding hyperslab selection info + See tables 2 & 3 in the RFC: H5Sencode/H5Sdecode Format Change + USAGE + hssize_t H5S_hyper_set_version(space, block_count, bounds_end, f, version) + const H5S_t *space: IN: The dataspace + hsize_t block_count: IN: The number of blocks in the selection + hsize_t bounds_end: IN: The selection high bounds + H5F_t *f: IN: The file pointer + uint32_t *version: OUT: The version to use for encoding + + RETURNS + The version to use + DESCRIPTION + Determine the version to use for encoding hyperslab selection info based + on whether the number of blocks or the selection high bounds exceeds (2^32 - 1). + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_hyper_set_version(const H5S_t *space, hsize_t block_count, hsize_t bounds_end[], H5F_t *f, uint32_t *version) +{ + hbool_t count_up_version = FALSE; /* Whether number of blocks exceed (2^32 - 1) */ + hbool_t bound_up_version = FALSE; /* Whether high bounds exceed (2^32 - 1) */ + unsigned u; /* Local index veriable */ + uint32_t tmp_version; /* Temporay version */ + herr_t ret_value = SUCCEED; /* return value */ + + FUNC_ENTER_NOAPI_NOINIT + + /* Determine whether the number of blocks or the high bounds in the selection exceed (2^32 - 1) */ + if(block_count > H5S_UINT32_MAX) + count_up_version = TRUE; + else { + for(u = 0; u < space->extent.rank; u++) + if(bounds_end[u] > H5S_UINT32_MAX) + bound_up_version = TRUE; + } + + /* Use version 2 for unlimited selection */ + if(space->select.sel_info.hslab->unlim_dim >= 0) + tmp_version = H5S_HYPER_VERSION_2; + else if(H5S_hyper_is_regular(space)) { + + /* If exceed (2^32 -1) */ + if(count_up_version || bound_up_version) + tmp_version = H5S_HYPER_VERSION_2; + else + /* block_count < 4: version 1 */ + /* block_count >= 4: determined by low bound */ + tmp_version = (block_count < 4) ? H5S_HYPER_VERSION_1 : H5O_sds_hyper_ver_bounds[H5F_LOW_BOUND(f)]; + + } else { + /* Fail for irregular hyperslab if exceeds 32 bits */ + if(count_up_version) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The number of blocks in hyperslab selection exceeds 2^32") + else if(bound_up_version) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The end of bounding box in hyperslab selection exceeds 2^32") + tmp_version = H5S_HYPER_VERSION_1; + } + + /* Version bounds check */ + if(tmp_version > H5O_sds_hyper_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "Dataspace hyperslab selection version out of bounds") + + *version = tmp_version; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5S_hyper_set_version() */ + + +/*-------------------------------------------------------------------------- + NAME H5S_hyper_serial_size PURPOSE Determine the number of bytes needed to store the serialized hyperslab selection information. USAGE - hssize_t H5S_hyper_serial_size(space) + hssize_t H5S_hyper_serial_size(space, H5F_t *f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -1959,52 +2093,72 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_hyper_serial_size(const H5S_t *space) +H5S_hyper_serial_size(const H5S_t *space, H5F_t *f) { - hsize_t block_count; /* block counter for regular hyperslabs */ - unsigned u; /* Counter */ - hssize_t ret_value = -1; /* return value */ + hsize_t block_count = 0; /* block counter for regular hyperslabs */ + hsize_t bounds_start[H5S_MAX_RANK]; /* Selection bounds */ + hsize_t bounds_end[H5S_MAX_RANK]; /* Selection bounds */ + uint32_t version; /* Version number */ + uint8_t offset_size; /* Offset size */ + unsigned u; /* Local index variable */ + hssize_t ret_value = -1; /* return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT HDassert(space); - /* Check for version (right now, an unlimited dimension is the only thing - * that would bump the version) */ - if(space->select.sel_info.hslab->unlim_dim >= 0) + /* Get bounding box for the selection */ + HDmemset(bounds_end, 0, sizeof(bounds_end)); + if(space->select.sel_info.hslab->unlim_dim < 0) { /* ! H5S_UNLIMITED */ + /* Determine the number of blocks */ + if(H5S_hyper_is_regular(space)) { + /* Check each dimension */ + for(block_count = 1, u = 0; u < space->extent.rank; u++) + block_count *= space->select.sel_info.hslab->opt_diminfo[u].count; + } /* end if */ + else + /* Spin through hyperslab spans, adding 8 * rank bytes for each block */ + block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); + + /* Get bounding box for the selection */ + if(H5S_hyper_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + } + + /* Determine the version */ + if(H5S_hyper_set_version(space, block_count, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the offset size */ + if(H5S_hyper_set_offset_size(space, block_count, bounds_end, version, &offset_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + if(version == H5S_HYPER_VERSION_2) { /* Version 2 */ /* Size required is always: * <type (4 bytes)> + <version (4 bytes)> + <flags (1 byte)> + * <length (4 bytes)> + <rank (4 bytes)> + - * (4 (start/stride/count/block) * <rank> * <value (8 bytes)>) = - * 17 + (4 * rank * 8) bytes + * (4 (start/stride/count/block) * <offset_size (8 bytes)> * <rank>) = + * 17 + (4 * 8 * rank) bytes */ - ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)space->extent.rank - * (hssize_t)8); - else { + HDassert(offset_size == 8); + ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)8 * (hssize_t)space->extent.rank); + } else { + HDassert(version == H5S_HYPER_VERSION_1); + HDassert(offset_size == 4); /* Version 1 */ /* Basic number of bytes required to serialize hyperslab selection: * <type (4 bytes)> + <version (4 bytes)> + <padding (4 bytes)> + - * <length (4 bytes)> + <rank (4 bytes)> + <# of blocks (4 bytes)> - * = 24 bytes + * <length (4 bytes)> + <rank (4 bytes)> + <# of blocks (4 bytes)> + + * (2 (starting/ending offset) * <offset_size (4 bytes)> * <rank> * <# of blocks) = + * = 24 bytes + (2 * 4 * rank * block_count) */ ret_value = 24; - - /* Check for a "regular" hyperslab selection */ - if(space->select.sel_info.hslab->diminfo_valid) { - /* Check each dimension */ - for(block_count = 1, u = 0; u < space->extent.rank; u++) - block_count *= space->select.sel_info.hslab->opt_diminfo[u].count; - } /* end if */ - else - /* Spin through hyperslab spans, adding 8 * rank bytes for each - * block */ - block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); - H5_CHECK_OVERFLOW((8 * space->extent.rank * block_count), hsize_t, hssize_t); - ret_value += (hssize_t)(8 * block_count * space->extent.rank); + ret_value += (hssize_t)(8 * space->extent.rank * block_count); } /* end else */ +done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_hyper_serial_size() */ @@ -2100,6 +2254,7 @@ H5S_hyper_serialize_helper(const H5S_hyper_span_info_t *spans, uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -2111,15 +2266,15 @@ H5S_hyper_serialize_helper(const H5S_hyper_span_info_t *spans, REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_hyper_serialize(const H5S_t *space, uint8_t **p) +H5S_hyper_serialize(const H5S_t *space, uint8_t **p, H5F_t *f) { const H5S_hyper_dim_t *diminfo; /* Alias for dataspace's diminfo information */ uint8_t *pp = (*p); /* Local pointer for decoding */ hsize_t tmp_count[H5O_LAYOUT_NDIMS]; /* Temporary hyperslab counts */ - hsize_t offset[H5O_LAYOUT_NDIMS]; /* Offset of element in dataspace */ + hsize_t offset[H5O_LAYOUT_NDIMS]; /* Offset of element in dataspace */ hsize_t start[H5O_LAYOUT_NDIMS]; /* Location of start of hyperslab */ hsize_t end[H5O_LAYOUT_NDIMS]; /* Location of end of hyperslab */ - hsize_t temp_off; /* Offset in a given dimension */ + hsize_t temp_off; /* Offset in a given dimension */ uint8_t *lenp; /* pointer to length location for later storage */ uint32_t len = 0; /* number of bytes used */ uint32_t version; /* Version number */ @@ -2127,63 +2282,89 @@ H5S_hyper_serialize(const H5S_t *space, uint8_t **p) hsize_t block_count; /* block counter for regular hyperslabs */ unsigned fast_dim; /* Rank of the fastest changing dimension for the dataspace */ unsigned ndims; /* Rank of the dataspace */ + unsigned u; /* Local counting variable */ int done; /* Whether we are done with the iteration */ + uint8_t offset_size; + hsize_t bounds_start[H5S_MAX_RANK]; + hsize_t bounds_end[H5S_MAX_RANK]; + herr_t ret_value = SUCCEED; /* return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT HDassert(space); HDassert(p); HDassert(pp); - /* Calculate version */ - if(space->select.sel_info.hslab->unlim_dim >= 0) { - version = 2; - flags |= H5S_SELECT_FLAG_UNLIM; - } /* end if */ - else - version = 1; + /* Set some convienence values */ + ndims = space->extent.rank; + diminfo = space->select.sel_info.hslab->opt_diminfo; + + if(space->select.sel_info.hslab->unlim_dim < 0) { /* ! H5S_UNLIMITED */ + /* Calculate the # of blocks */ + if(H5S_hyper_is_regular(space)) { + /* Check each dimension */ + for(block_count = 1, u = 0; u < ndims; u++) + block_count *= diminfo[u].count; + } /* end if */ + else + /* Spin through hyperslab spans, adding 8 * rank bytes for each block */ + block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); + + /* Get bounding box */ + if(H5S_hyper_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + } + + /* Determine the version to use */ + if(H5S_hyper_set_version(space, block_count, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the size of offset info */ + if(H5S_hyper_set_offset_size(space, block_count, bounds_end, version, &offset_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + if(H5S_hyper_is_regular(space) && version == H5S_HYPER_VERSION_2) + flags |= H5S_HYPER_REGULAR; /* Store the preamble information */ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ UINT32ENCODE(pp, version); /* Store the version number */ - if(version >= 2) - *(pp)++ = flags; /* Store the flags */ + + if(version == 2) + *(pp)++ = flags; /* Store the flags */ else UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ - lenp = pp; /* keep the pointer to the length location for later */ - pp += 4; /* skip over space for length */ + lenp = pp; /* keep the pointer to the length location for later */ + pp += 4; /* skip over space for length */ + + len += 4; /* ndims */ /* Encode number of dimensions */ - UINT32ENCODE(pp, (uint32_t)space->extent.rank); - len += 4; + UINT32ENCODE(pp, (uint32_t)ndims); - /* If there is an unlimited dimension, only encode opt_unlim_diminfo */ - if(flags & H5S_SELECT_FLAG_UNLIM) { + /* If flags indicates a regular hyperslab or unlimited dimension, encode opt_diminfo */ + if(flags & H5S_HYPER_REGULAR) { unsigned i; HDassert(H5S_UNLIMITED == HSIZE_UNDEF); + HDassert(version == H5S_HYPER_VERSION_2); /* Iterate over dimensions */ + /* Encode start/stride/block/count */ for(i = 0; i < space->extent.rank; i++) { - /* Encode start/stride/block/count */ - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].start); - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].stride); - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].count); - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].block); + UINT64ENCODE(pp, diminfo[i].start); + UINT64ENCODE(pp, diminfo[i].stride); + UINT64ENCODE(pp, diminfo[i].count); + UINT64ENCODE(pp, diminfo[i].block); } /* end for */ + len += (4 * space->extent.rank * 8); } /* end if */ /* Check for a "regular" hyperslab selection */ - else if(space->select.sel_info.hslab->diminfo_valid) { - unsigned u; /* Local counting variable */ + else if(H5S_hyper_is_regular(space)) { + HDassert(version == H5S_HYPER_VERSION_1); /* Set some convienence values */ - ndims = space->extent.rank; fast_dim = ndims - 1; - diminfo=space->select.sel_info.hslab->opt_diminfo; - - /* Check each dimension */ - for(block_count = 1, u = 0; u < ndims; u++) - block_count *= diminfo[u].count; /* Encode number of hyperslabs */ H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); @@ -2262,15 +2443,16 @@ H5S_hyper_serialize(const H5S_t *space, uint8_t **p) } /* end while */ } /* end if */ else { + HDassert(version == H5S_HYPER_VERSION_1); /* Encode number of hyperslabs */ - block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); UINT32ENCODE(pp, (uint32_t)block_count); - len+=4; + + len+=4; /* block_count */ /* Add 8 bytes times the rank for each hyperslab selected */ - H5_CHECK_OVERFLOW((8 * space->extent.rank * block_count), hsize_t, size_t); - len += (uint32_t)(8 * space->extent.rank * block_count); + H5_CHECK_OVERFLOW((8 * ndims * block_count), hsize_t, size_t); + len += (uint32_t)(8 * ndims * block_count); /* Encode each hyperslab in selection */ H5S_hyper_serialize_helper(space->select.sel_info.hslab->span_lst, start, end, (hsize_t)0, &pp); @@ -2282,7 +2464,8 @@ H5S_hyper_serialize(const H5S_t *space, uint8_t **p) /* Update encoding pointer */ *p = pp; - FUNC_LEAVE_NOAPI(SUCCEED) +done: + FUNC_LEAVE_NOAPI(ret_value) } /* H5S_hyper_serialize() */ @@ -2316,7 +2499,7 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla { unsigned rank; /* rank of points */ const uint8_t *pp = (*p); /* Local pointer for decoding */ - size_t num_elem=0; /* number of elements in selection */ + hsize_t num_elem=0; /* number of elements in selection */ hsize_t start[H5O_LAYOUT_NDIMS]; /* hyperslab start information */ hsize_t end[H5O_LAYOUT_NDIMS]; /* hyperslab end information */ hsize_t stride[H5O_LAYOUT_NDIMS]; /* hyperslab stride information */ @@ -2341,14 +2524,13 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla /* (The header and rank have already beed decoded) */ rank = space->extent.rank; /* Retrieve rank from space */ - /* If there is an unlimited dimension, only encode opt_unlim_diminfo */ - if(flags & H5S_SELECT_FLAG_UNLIM) { + if(flags & H5S_HYPER_REGULAR) { HDassert(H5S_UNLIMITED == HSIZE_UNDEF); HDassert(version >= 2); /* Iterate over dimensions */ + /* Decode start/stride/block/count */ for(i = 0; i < space->extent.rank; i++) { - /* Decode start/stride/block/count */ UINT64DECODE(pp, start[i]); UINT64DECODE(pp, stride[i]); UINT64DECODE(pp, count[i]); @@ -2360,7 +2542,7 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") } /* end if */ else { - /* decode the number of points */ + /* decode the number of blocks */ UINT32DECODE(pp,num_elem); /* Set the count & stride for all blocks */ @@ -2371,11 +2553,10 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla /* Retrieve the coordinates from the buffer */ for(i = 0; i < num_elem; i++) { - /* Decode the starting points */ + + /* Decode the starting and ending points */ for(tstart=start,j=0; j<rank; j++,tstart++) UINT32DECODE(pp, *tstart); - - /* Decode the ending points */ for(tend = end, j = 0; j < rank; j++, tend++) UINT32DECODE(pp, *tend); diff --git a/src/H5Snone.c b/src/H5Snone.c index 104b0bb..160745b 100644 --- a/src/H5Snone.c +++ b/src/H5Snone.c @@ -37,8 +37,8 @@ static herr_t H5S_none_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_none_release(H5S_t *space); static htri_t H5S_none_is_valid(const H5S_t *space); -static hssize_t H5S_none_serial_size(const H5S_t *space); -static herr_t H5S_none_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_none_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_none_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_none_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_none_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -57,7 +57,7 @@ static herr_t H5S_none_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); static herr_t H5S_none_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_none_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_none_iter_has_next_block(const H5S_sel_iter_t *iter); -static herr_t H5S_none_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_none_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_none_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_none_iter_release(H5S_sel_iter_t *sel_iter); @@ -251,7 +251,7 @@ H5S_none_iter_has_next_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter) USAGE herr_t H5S_none_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN: Pointer to selection iterator - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -262,7 +262,7 @@ H5S_none_iter_has_next_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_none_iter_next(H5S_sel_iter_t H5_ATTR_UNUSED *iter, size_t H5_ATTR_UNUSED nelem) +H5S_none_iter_next(H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED nelem) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -433,8 +433,9 @@ H5S_none_is_valid(const H5S_t H5_ATTR_UNUSED *space) Determine the number of bytes needed to store the serialized "none" selection information. USAGE - hssize_t H5S_none_serial_size(space) + hssize_t H5S_none_serial_size(space, f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -446,7 +447,7 @@ H5S_none_is_valid(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space) +H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space, H5F_t H5_ATTR_UNUSED *f) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -466,11 +467,12 @@ H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_none_serialize(space, p) + herr_t H5S_none_serialize(space, p, f) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -482,7 +484,7 @@ H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_none_serialize(const H5S_t *space, uint8_t **p) +H5S_none_serialize(const H5S_t *space, uint8_t **p, H5F_t H5_ATTR_UNUSED *f) { uint8_t *pp = (*p); /* Local pointer for decoding */ @@ -494,8 +496,8 @@ H5S_none_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ diff --git a/src/H5Spkg.h b/src/H5Spkg.h index 5312ce7..75c5e77 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -33,8 +33,28 @@ #define H5S_VALID_PERM 0x02 /* Flags for serialization of selections */ -#define H5S_SELECT_FLAG_UNLIM 0x01 -#define H5S_SELECT_FLAG_BITS (H5S_SELECT_FLAG_UNLIM) +#define H5S_HYPER_REGULAR 0x01 +#define H5S_SELECT_FLAG_BITS (H5S_HYPER_REGULAR) + +/* Versions for H5S_SEL_HYPER selection info */ +#define H5S_HYPER_VERSION_1 1 +#define H5S_HYPER_VERSION_2 2 + +/* Versions for H5S_SEL_POINTS selection info */ +#define H5S_POINT_VERSION_1 1 + +/* Versions for H5S_SEL_NONE selection info */ +#define H5S_NONE_VERSION_1 1 + +/* Versions for H5S_SEL_ALL selection info */ +#define H5S_ALL_VERSION_1 1 + +/* Size of point/offset info for H5S_SEL_POINTS/H5S_SEL_HYPER */ +#define H5S_INFO_SIZE_4 0x04 /* 4 bytes: 32 bits */ +#define H5S_INFO_SIZE_8 0x08 /* 8 bytes: 64 bits */ +#define H5S_SELECT_INFO_SIZE_BITS (H5S_INFO_SIZE_4|H5S_INFO_SIZE_8) + +#define H5S_UINT32_MAX 4294967295 /* 2^32 - 1 */ /* Length of stack-allocated sequences for "project intersect" routines */ #define H5S_PROJECT_INTERSECT_NSEQS 256 @@ -139,9 +159,9 @@ typedef herr_t (*H5S_sel_release_func_t)(H5S_t *space); /* Method to determine if current selection is valid for dataspace */ typedef htri_t (*H5S_sel_is_valid_func_t)(const H5S_t *space); /* Method to determine number of bytes required to store current selection */ -typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space); +typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space, H5F_t *f); /* Method to store current selection in "serialized" form (a byte sequence suitable for storing on disk) */ -typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t **p); +typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t **p, H5F_t *f); /* Method to create selection from "serialized" form (a byte sequence suitable for storing on disk) */ typedef herr_t (*H5S_sel_deserialize_func_t)(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); @@ -222,7 +242,7 @@ typedef hsize_t (*H5S_sel_iter_nelmts_func_t)(const H5S_sel_iter_t *iter); /* Method to determine if there are more blocks left in the current selection */ typedef htri_t (*H5S_sel_iter_has_next_block_func_t)(const H5S_sel_iter_t *iter); /* Method to move selection iterator to the next element in the selection */ -typedef herr_t (*H5S_sel_iter_next_func_t)(H5S_sel_iter_t *iter, size_t nelem); +typedef herr_t (*H5S_sel_iter_next_func_t)(H5S_sel_iter_t *iter, hsize_t nelem); /* Method to move selection iterator to the next block in the selection */ typedef herr_t (*H5S_sel_iter_next_block_func_t)(H5S_sel_iter_t *iter); /* Method to release iterator for current selection */ @@ -262,8 +282,9 @@ H5_DLLVAR const H5S_select_class_t H5S_sel_none[1]; */ H5_DLLVAR const H5S_select_class_t H5S_sel_point[1]; -/* Array of versions for Dataspace */ +/* Array of versions for Dataspace and hyperslab selections */ H5_DLLVAR const unsigned H5O_sdspace_ver_bounds[H5F_LIBVER_NBOUNDS]; +H5_DLLVAR const unsigned H5O_sds_hyper_ver_bounds[H5F_LIBVER_NBOUNDS]; /* Extent functions */ H5_DLL herr_t H5S_extent_release(H5S_extent_t *extent); diff --git a/src/H5Spoint.c b/src/H5Spoint.c index 251a063..d13dd0a 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -38,8 +38,8 @@ static herr_t H5S_point_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_point_release(H5S_t *space); static htri_t H5S_point_is_valid(const H5S_t *space); -static hssize_t H5S_point_serial_size(const H5S_t *space); -static herr_t H5S_point_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_point_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_point_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_point_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_point_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -58,7 +58,7 @@ static herr_t H5S_point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) static herr_t H5S_point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_point_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_point_iter_has_next_block(const H5S_sel_iter_t *iter); -static herr_t H5S_point_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_point_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_point_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_point_iter_release(H5S_sel_iter_t *sel_iter); @@ -278,7 +278,7 @@ done: USAGE herr_t H5S_point_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN: Pointer to selection iterator - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -289,7 +289,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_point_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -376,7 +376,7 @@ H5S_point_iter_release (H5S_sel_iter_t H5_ATTR_UNUSED * iter) USAGE herr_t H5S_point_add(space, num_elem, coord) H5S_t *space; IN: Dataspace of selection to modify - size_t num_elem; IN: Number of elements in COORD array. + hsize_t num_elem; IN: Number of elements in COORD array. const hsize_t *coord[]; IN: The location of each element selected RETURNS Non-negative on success/Negative on failure @@ -388,7 +388,7 @@ H5S_point_iter_release (H5S_sel_iter_t H5_ATTR_UNUSED * iter) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_add(H5S_t *space, H5S_seloper_t op, size_t num_elem, const hsize_t *coord) +H5S_point_add(H5S_t *space, H5S_seloper_t op, hsize_t num_elem, const hsize_t *coord) { H5S_pnt_node_t *top = NULL, *curr = NULL, *new_node = NULL; /* Point selection nodes */ unsigned u; /* Counter */ @@ -527,7 +527,7 @@ H5S_point_release (H5S_t *space) herr_t H5S_select_elements(dsid, op, num_elem, coord) hid_t dsid; IN: Dataspace ID of selection to modify H5S_seloper_t op; IN: Operation to perform on current selection - size_t num_elem; IN: Number of elements in COORD array. + hsize_t num_elem; IN: Number of elements in COORD array. const hsize_t *coord; IN: The location of each element selected RETURNS Non-negative on success/Negative on failure @@ -549,7 +549,7 @@ H5S_point_release (H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_elements(H5S_t *space, H5S_seloper_t op, size_t num_elem, +H5S_select_elements(H5S_t *space, H5S_seloper_t op, hsize_t num_elem, const hsize_t *coord) { herr_t ret_value = SUCCEED; /* return value */ @@ -752,6 +752,93 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Sget_select_elem_npoints() */ +/*-------------------------------------------------------------------------- + NAME + H5S_point_set_version + PURPOSE + Determine the version to use for encoding points selection info + USAGE + hssize_t H5S_point_set_version(space, bounds_end, f, version) + const H5S_t *space; IN: The dataspace + hsize_t bounds_end: IN: The selection high bounds + H5F_t *f: IN: The file pointer + uint32_t *version: OUT: The version to use for encoding + RETURNS + The version to use + DESCRIPTION + Determine the version to use for encoding points selection info: + For 1.10, return 1 + + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_point_set_version(const H5S_t *space, hsize_t bounds_end[], H5F_t *f, uint32_t *version) +{ + hbool_t exceed = FALSE; + unsigned u; + herr_t ret_value = SUCCEED; /* return value */ + + FUNC_ENTER_NOAPI_NOINIT + + *version = H5S_POINT_VERSION_1; + + /* Determine whether the number of points or the high bounds in the selection exceed (2^32 - 1) */ + for(u = 0; u < space->extent.rank; u++) + if(bounds_end[u] > H5S_UINT32_MAX) { + exceed = TRUE; + break; + } + + if(space->select.num_elem > H5S_UINT32_MAX) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The number of points in point selection exceeds 2^32") + else if(exceed) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The end of bounding box in point selection exceeds 2^32") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5S_point_set_version() */ + + +/*-------------------------------------------------------------------------- + NAME + H5S_point_set_info_size + PURPOSE + Determine the size of point info to use for encoding selection info + USAGE + hssize_t H5S_point_set_info_size(space, bounds_end, version, point_size) + const H5S_t *space: IN: Dataspace ID of selection to query + hsize_t bounds_end[]: IN: The selection high bounds + uint32_t version: IN: The version used for encoding + uint8_t *point_size: OUT: The size of point info + RETURNS + The size of the points selection info + DESCRIPTION + Determine the size for encoding points selection info: + For 1.10, return 4 + + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_point_set_info_size(const H5S_t *space, hsize_t H5_ATTR_UNUSED bounds_end[], uint32_t H5_ATTR_UNUSED version, uint8_t H5_ATTR_UNUSED *point_size) +{ + hsize_t max_size = 0; + unsigned u; + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + HDassert(version == H5S_POINT_VERSION_1); + + *point_size = H5S_INFO_SIZE_4; + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* H5S_point_set_info_size() */ + /*-------------------------------------------------------------------------- NAME @@ -760,8 +847,9 @@ done: Determine the number of bytes needed to store the serialized point selection information. USAGE - hssize_t H5S_point_serial_size(space) + hssize_t H5S_point_serial_size(space, f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -773,29 +861,54 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_point_serial_size (const H5S_t *space) +H5S_point_serial_size (const H5S_t *space, H5F_t *f) { H5S_pnt_node_t *curr; /* Point information nodes */ + hsize_t bounds_start[H5S_MAX_RANK]; + hsize_t bounds_end[H5S_MAX_RANK]; + uint32_t version; /* Version number */ + uint8_t point_size; /* Size of point info */ hssize_t ret_value = -1; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT HDassert(space); - /* Basic number of bytes required to serialize point selection: + /* Get bounding box for the selection */ + HDmemset(bounds_end, 0, sizeof(bounds_end)); + if(H5S_point_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + + /* Determine the version */ + if(H5S_point_set_version(space, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the size of point info */ + if(H5S_point_set_info_size(space, bounds_end, version, &point_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + HDassert(version == H5S_POINT_VERSION_1); + HDassert(point_size == H5S_INFO_SIZE_4); + + /* Basic number of bytes required to serialize point selection: */ + /* * <type (4 bytes)> + <version (4 bytes)> + <padding (4 bytes)> + - * <length (4 bytes)> + <rank (4 bytes)> + <# of points (4 bytes)> = 24 bytes + * <length (4 bytes)> + <rank (4 bytes)> */ - ret_value=24; + ret_value=20; + + /* <num points (depend on point_size)> */ + ret_value += point_size; /* Count points in selection */ curr=space->select.sel_info.pnt_lst->head; while(curr!=NULL) { - /* Add 4 bytes times the rank for each element selected */ - ret_value+=4*space->extent.rank; - curr=curr->next; + /* Add <point_size> bytes times the rank for each element selected */ + ret_value += point_size * space->extent.rank; + curr = curr->next; } /* end while */ +done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_point_serial_size() */ @@ -806,11 +919,12 @@ H5S_point_serial_size (const H5S_t *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_point_serialize(space, p) + herr_t H5S_point_serialize(space, p, f) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -822,41 +936,63 @@ H5S_point_serial_size (const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_serialize (const H5S_t *space, uint8_t **p) +H5S_point_serialize (const H5S_t *space, uint8_t **p, H5F_t *f) { H5S_pnt_node_t *curr; /* Point information nodes */ uint8_t *pp = (*p); /* Local pointer for decoding */ uint8_t *lenp; /* pointer to length location for later storage */ uint32_t len=0; /* number of bytes used */ unsigned u; /* local counting variable */ + uint32_t version; /* Version number */ + uint8_t point_size; /* Size of point info */ + hsize_t bounds_start[H5S_MAX_RANK]; + hsize_t bounds_end[H5S_MAX_RANK]; + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT /* Check args */ HDassert(space); HDassert(p); HDassert(pp); + /* Get bounding box for the selection */ + HDmemset(bounds_end, 0, sizeof(bounds_end)); + if(H5S_point_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + + /* Determine the version */ + if(H5S_point_set_version(space, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the size of point info */ + if(H5S_point_set_info_size(space, bounds_end, version, &point_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + HDassert(point_size == H5S_INFO_SIZE_4); + HDassert(version == H5S_POINT_VERSION_1); + /* Store the preamble information */ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(pp, version); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ - lenp = pp; /* Keep the pointer to the length location for later */ - pp += 4; /* Skip over space for length */ + lenp = pp; /* Keep the pointer to the length location for later */ + pp += 4; /* Skip over space for length */ + len += 8; /* Add in advance # of bytes for num of dimensions and num elements */ /* Encode number of dimensions */ UINT32ENCODE(pp, (uint32_t)space->extent.rank); - len+=4; + /* Encode number of elements */ UINT32ENCODE(pp, (uint32_t)space->select.num_elem); - len+=4; /* Encode each point in selection */ curr=space->select.sel_info.pnt_lst->head; while(curr!=NULL) { /* Add 4 bytes times the rank for each element selected */ - len+=4*space->extent.rank; + len += 4 * space->extent.rank; /* Encode each point */ for(u=0; u<space->extent.rank; u++) @@ -871,7 +1007,8 @@ H5S_point_serialize (const H5S_t *space, uint8_t **p) /* Update encoding pointer */ *p = pp; - FUNC_LEAVE_NOAPI(SUCCEED) +done: + FUNC_LEAVE_NOAPI(ret_value) } /* H5S_point_serialize() */ @@ -906,7 +1043,7 @@ H5S_point_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t H5_ H5S_seloper_t op = H5S_SELECT_SET; /* Selection operation */ hsize_t *coord = NULL, *tcoord; /* Pointer to array of elements */ const uint8_t *pp = (*p); /* Local pointer for decoding */ - size_t num_elem = 0; /* Number of elements in selection */ + hsize_t num_elem = 0; /* Number of elements in selection */ unsigned rank; /* Rank of points */ unsigned i, j; /* local counting variables */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1619,7 +1756,7 @@ H5Sselect_elements(hid_t spaceid, H5S_seloper_t op, size_t num_elem, HGOTO_ERROR(H5E_ARGS, H5E_UNSUPPORTED, FAIL, "unsupported operation attempted") /* Call the real element selection routine */ - if((ret_value = H5S_select_elements(space, op, num_elem, coord)) < 0) + if((ret_value = H5S_select_elements(space, op, (hsize_t)num_elem, coord)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't select elements") done: diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index bb84ebd..e8a42e8 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -149,8 +149,8 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_GET_SEQ_LIST(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) ((*(S)->select.type->get_seq_list)(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN)) #define H5S_SELECT_VALID(S) ((*(S)->select.type->is_valid)(S)) #define H5S_SELECT_RELEASE(S) ((*(S)->select.type->release)(S)) -#define H5S_SELECT_SERIAL_SIZE(S) ((*(S)->select.type->serial_size)(S)) -#define H5S_SELECT_SERIALIZE(S,BUF) ((*(S)->select.type->serialize)(S,BUF)) +#define H5S_SELECT_SERIAL_SIZE(S,F) ((*(S)->select.type->serial_size)(S,F)) +#define H5S_SELECT_SERIALIZE(S,BUF,F) ((*(S)->select.type->serialize)(S,BUF,F)) #define H5S_SELECT_BOUNDS(S,START,END) ((*(S)->select.type->bounds)(S,START,END)) #define H5S_SELECT_OFFSET(S, OFFSET) ((*(S)->select.type->offset)(S, OFFSET)) #define H5S_SELECT_IS_CONTIGUOUS(S) ((*(S)->select.type->is_contiguous)(S)) @@ -175,8 +175,8 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_GET_SEQ_LIST(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) (H5S_select_get_seq_list(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN)) #define H5S_SELECT_VALID(S) (H5S_select_valid(S)) #define H5S_SELECT_RELEASE(S) (H5S_select_release(S)) -#define H5S_SELECT_SERIAL_SIZE(S) (H5S_select_serial_size(S)) -#define H5S_SELECT_SERIALIZE(S,BUF) (H5S_select_serialize(S,BUF)) +#define H5S_SELECT_SERIAL_SIZE(S,F) (H5S_select_serial_size(S,F)) +#define H5S_SELECT_SERIALIZE(S,BUF,F) (H5S_select_serialize(S,BUF,F)) #define H5S_SELECT_BOUNDS(S,START,END) (H5S_get_select_bounds(S,START,END)) #define H5S_SELECT_OFFSET(S, OFFSET) (H5S_get_select_offset(S, OFFSET)) #define H5S_SELECT_IS_CONTIGUOUS(S) (H5S_select_is_contiguous(S)) @@ -220,7 +220,7 @@ H5_DLL H5S_t *H5S_create(H5S_class_t type); H5_DLL H5S_t *H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]); H5_DLL herr_t H5S_set_version(H5F_t *f, H5S_t *ds); -H5_DLL herr_t H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc); +H5_DLL herr_t H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc, hid_t fapl_id); H5_DLL H5S_t *H5S_decode(const unsigned char **p); H5_DLL herr_t H5S_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *stream, int indent, int fwidth); @@ -258,8 +258,8 @@ H5_DLL herr_t H5S_select_release(H5S_t *ds); H5_DLL herr_t H5S_select_get_seq_list(const H5S_t *space, unsigned flags, H5S_sel_iter_t *iter, size_t maxseq, size_t maxbytes, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); -H5_DLL hssize_t H5S_select_serial_size(const H5S_t *space); -H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t **p); +H5_DLL hssize_t H5S_select_serial_size(const H5S_t *space, H5F_t *f); +H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); H5_DLL htri_t H5S_select_is_contiguous(const H5S_t *space); H5_DLL htri_t H5S_select_is_single(const H5S_t *space); H5_DLL htri_t H5S_select_is_regular(const H5S_t *space); @@ -279,7 +279,7 @@ H5_DLL herr_t H5S_select_none(H5S_t *space); /* Operations on point selections */ H5_DLL herr_t H5S_select_elements(H5S_t *space, H5S_seloper_t op, - size_t num_elem, const hsize_t *coord); + hsize_t num_elem, const hsize_t *coord); /* Operations on hyperslab selections */ H5_DLL herr_t H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op, const hsize_t start[], @@ -309,7 +309,7 @@ H5_DLL hsize_t H5S_hyper_get_first_inc_block(const H5S_t *space, H5_DLL herr_t H5S_select_iter_init(H5S_sel_iter_t *iter, const H5S_t *space, size_t elmt_size); H5_DLL herr_t H5S_select_iter_coords(const H5S_sel_iter_t *sel_iter, hsize_t *coords); H5_DLL hsize_t H5S_select_iter_nelmts(const H5S_sel_iter_t *sel_iter); -H5_DLL herr_t H5S_select_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +H5_DLL herr_t H5S_select_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); H5_DLL herr_t H5S_select_iter_release(H5S_sel_iter_t *sel_iter); #ifdef H5_HAVE_PARALLEL diff --git a/src/H5Sselect.c b/src/H5Sselect.c index c34e1cc..dbbc927 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -225,7 +225,7 @@ H5S_select_get_seq_list(const H5S_t *space, unsigned flags, *------------------------------------------------------------------------- */ hssize_t -H5S_select_serial_size(const H5S_t *space) +H5S_select_serial_size(const H5S_t *space, H5F_t *f) { hssize_t ret_value = -1; /* Return value */ @@ -234,7 +234,7 @@ H5S_select_serial_size(const H5S_t *space) HDassert(space); /* Call the selection type's serial_size function */ - ret_value=(*space->select.type->serial_size)(space); + ret_value=(*space->select.type->serial_size)(space, f); FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_serial_size() */ @@ -251,6 +251,7 @@ H5S_select_serial_size(const H5S_t *space) uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -265,7 +266,7 @@ H5S_select_serial_size(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_serialize(const H5S_t *space, uint8_t **p) +H5S_select_serialize(const H5S_t *space, uint8_t **p, H5F_t *f) { herr_t ret_value=SUCCEED; /* Return value */ @@ -275,7 +276,7 @@ H5S_select_serialize(const H5S_t *space, uint8_t **p) HDassert(p); /* Call the selection type's serialize function */ - ret_value=(*space->select.type->serialize)(space,p); + ret_value=(*space->select.type->serialize)(space,p,f); FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_serialize() */ @@ -1225,7 +1226,7 @@ H5S_select_iter_has_next_block(const H5S_sel_iter_t *iter) USAGE herr_t H5S_select_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN/OUT: Selection iterator to change - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success, negative on failure. DESCRIPTION @@ -1240,7 +1241,7 @@ H5S_select_iter_has_next_block(const H5S_sel_iter_t *iter) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_select_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { herr_t ret_value = FAIL; /* Return value */ @@ -2870,7 +2870,7 @@ H5T_encode(H5T_t *obj, unsigned char *buf, size_t *nalloc) FUNC_ENTER_NOAPI_NOINIT /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc((uint8_t)0))) + if(NULL == (f = H5F_fake_alloc((uint8_t)0, H5P_FILE_ACCESS_DEFAULT))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") /* Find out the size of buffer needed */ @@ -2925,7 +2925,7 @@ H5T_decode(size_t buf_size, const unsigned char *buf) FUNC_ENTER_NOAPI_NOINIT /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc((uint8_t)0))) + if(NULL == (f = H5F_fake_alloc((uint8_t)0, H5P_FILE_ACCESS_DEFAULT))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") /* Decode the type of the information */ diff --git a/src/H5public.h b/src/H5public.h index 9157366..29c5ec1 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -92,11 +92,11 @@ extern "C" { /* Version numbers */ #define H5_VERS_MAJOR 1 /* For major interface/format changes */ -#define H5_VERS_MINOR 11 /* For minor interface/format changes */ +#define H5_VERS_MINOR 10 /* For minor interface/format changes */ #define H5_VERS_RELEASE 2 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "snap10" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.11.2" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.10.2-snap10" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) |