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-rw-r--r--src/H5Dchunk.c13
-rw-r--r--src/H5Dearray.c12
-rw-r--r--src/H5Dfarray.c12
-rw-r--r--src/H5Dint.c37
-rw-r--r--src/H5Doh.c44
-rw-r--r--src/H5Z.c21
6 files changed, 86 insertions, 53 deletions
diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c
index 33fc036..59227de 100644
--- a/src/H5Dchunk.c
+++ b/src/H5Dchunk.c
@@ -5443,7 +5443,7 @@ herr_t
H5D__chunk_delete(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_storage_t *storage)
{
H5D_chk_idx_info_t idx_info; /* Chunked index info */
- H5O_layout_t layout; /* Dataset layout message */
+ H5O_layout_t *layout = NULL; /* Dataset layout message */
hbool_t layout_read = FALSE; /* Whether the layout message was read from the file */
H5O_pline_t pline; /* I/O pipeline message */
hbool_t pline_read = FALSE; /* Whether the I/O pipeline message was read from the file */
@@ -5474,7 +5474,9 @@ H5D__chunk_delete(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_storage_t *storage)
if((exists = H5O_msg_exists_oh(oh, H5O_LAYOUT_ID)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to check for object header message")
else if(exists) {
- if(NULL == H5O_msg_read_oh(f, dxpl_id, oh, H5O_LAYOUT_ID, &layout))
+ if(NULL == (layout = (H5O_layout_t *)H5MM_calloc(sizeof(H5O_layout_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't get memory for layout")
+ if(NULL == H5O_msg_read_oh(f, dxpl_id, oh, H5O_LAYOUT_ID, layout))
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get layout message")
layout_read = TRUE;
} /* end else if */
@@ -5485,7 +5487,7 @@ H5D__chunk_delete(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_storage_t *storage)
idx_info.f = f;
idx_info.dxpl_id = dxpl_id;
idx_info.pline = &pline;
- idx_info.layout = &layout.u.chunk;
+ idx_info.layout = &layout->u.chunk;
idx_info.storage = &storage->u.chunk;
/* Delete the chunked storage information in the file */
@@ -5498,9 +5500,12 @@ done:
if(H5O_msg_reset(H5O_PLINE_ID, &pline) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTRESET, FAIL, "unable to reset I/O pipeline message")
if(layout_read)
- if(H5O_msg_reset(H5O_LAYOUT_ID, &layout) < 0)
+ if(H5O_msg_reset(H5O_LAYOUT_ID, layout) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTRESET, FAIL, "unable to reset layout message")
+ if(layout)
+ layout = (H5O_layout_t *)H5MM_xfree(layout);
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__chunk_delete() */
diff --git a/src/H5Dearray.c b/src/H5Dearray.c
index 1df0a58..8fea75f 100644
--- a/src/H5Dearray.c
+++ b/src/H5Dearray.c
@@ -37,6 +37,7 @@
#include "H5EAprivate.h" /* Extensible arrays */
#include "H5FLprivate.h" /* Free Lists */
#include "H5MFprivate.h" /* File space management */
+#include "H5MMprivate.h" /* Memory management */
#include "H5VMprivate.h" /* Vector functions */
@@ -629,7 +630,7 @@ H5D__earray_crt_dbg_context(H5F_t *f, hid_t dxpl_id, haddr_t obj_addr)
H5D_earray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
H5O_loc_t obj_loc; /* Pointer to an object's location */
hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */
- H5O_layout_t layout; /* Layout message */
+ H5O_layout_t *layout = NULL; /* Layout message */
void *ret_value = NULL; /* Return value */
FUNC_ENTER_STATIC
@@ -653,7 +654,9 @@ H5D__earray_crt_dbg_context(H5F_t *f, hid_t dxpl_id, haddr_t obj_addr)
obj_opened = TRUE;
/* Read the layout message */
- if(NULL == H5O_msg_read(&obj_loc, H5O_LAYOUT_ID, &layout, dxpl_id))
+ if(NULL == (layout = (H5O_layout_t *)H5MM_calloc(sizeof(H5O_layout_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't get memory for layout")
+ if(NULL == H5O_msg_read(&obj_loc, H5O_LAYOUT_ID, layout, dxpl_id))
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "can't get layout info")
/* close the object header */
@@ -662,7 +665,7 @@ H5D__earray_crt_dbg_context(H5F_t *f, hid_t dxpl_id, haddr_t obj_addr)
/* Create user data */
dbg_ctx->f = f;
- dbg_ctx->chunk_size = layout.u.chunk.size;
+ dbg_ctx->chunk_size = layout->u.chunk.size;
/* Set return value */
ret_value = dbg_ctx;
@@ -681,6 +684,9 @@ done:
} /* end if */
} /* end if */
+ if(layout)
+ layout = (H5O_layout_t *)H5MM_xfree(layout);
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_crt_dbg_context() */
diff --git a/src/H5Dfarray.c b/src/H5Dfarray.c
index d183a8c..b4bd6d6 100644
--- a/src/H5Dfarray.c
+++ b/src/H5Dfarray.c
@@ -36,6 +36,7 @@
#include "H5FAprivate.h" /* Fixed arrays */
#include "H5FLprivate.h" /* Free Lists */
#include "H5MFprivate.h" /* File space management */
+#include "H5MMprivate.h" /* Memory management */
#include "H5VMprivate.h" /* Vector functions */
@@ -469,7 +470,7 @@ H5D__farray_crt_dbg_context(H5F_t *f, hid_t dxpl_id, haddr_t obj_addr)
H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
H5O_loc_t obj_loc; /* Pointer to an object's location */
hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */
- H5O_layout_t layout; /* Layout message */
+ H5O_layout_t *layout = NULL; /* Layout message */
void *ret_value = NULL; /* Return value */
FUNC_ENTER_STATIC
@@ -493,7 +494,9 @@ H5D__farray_crt_dbg_context(H5F_t *f, hid_t dxpl_id, haddr_t obj_addr)
obj_opened = TRUE;
/* Read the layout message */
- if(NULL == H5O_msg_read(&obj_loc, H5O_LAYOUT_ID, &layout, dxpl_id))
+ if(NULL == (layout = (H5O_layout_t *)H5MM_calloc(sizeof(H5O_layout_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't get memory for layout")
+ if(NULL == H5O_msg_read(&obj_loc, H5O_LAYOUT_ID, layout, dxpl_id))
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "can't get layout info")
/* close the object header */
@@ -502,7 +505,7 @@ H5D__farray_crt_dbg_context(H5F_t *f, hid_t dxpl_id, haddr_t obj_addr)
/* Create user data */
dbg_ctx->f = f;
- dbg_ctx->chunk_size = layout.u.chunk.size;
+ dbg_ctx->chunk_size = layout->u.chunk.size;
/* Set return value */
ret_value = dbg_ctx;
@@ -521,6 +524,9 @@ done:
} /* end if */
} /* end if */
+ if(layout)
+ layout = (H5O_layout_t *)H5MM_xfree(layout);
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__farray_crt_dbg_context() */
diff --git a/src/H5Dint.c b/src/H5Dint.c
index 08b3eb8..1da9d12 100644
--- a/src/H5Dint.c
+++ b/src/H5Dint.c
@@ -3302,7 +3302,7 @@ H5D_get_create_plist(H5D_t *dset)
{
H5P_genplist_t *dcpl_plist; /* Dataset's DCPL */
H5P_genplist_t *new_plist; /* Copy of dataset's DCPL */
- H5O_layout_t copied_layout; /* Layout to tweak */
+ H5O_layout_t *copied_layout = NULL; /* Layout to tweak */
H5O_fill_t copied_fill; /* Fill value to tweak */
H5O_efl_t copied_efl; /* External file list to tweak */
hid_t new_dcpl_id = FAIL;
@@ -3325,39 +3325,41 @@ H5D_get_create_plist(H5D_t *dset)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get object creation info")
/* Get the layout property */
- if(H5P_peek(new_plist, H5D_CRT_LAYOUT_NAME, &copied_layout) < 0)
+ if(NULL == (copied_layout = (H5O_layout_t *)H5MM_calloc(sizeof(H5O_layout_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't get memory for layout")
+ if(H5P_peek(new_plist, H5D_CRT_LAYOUT_NAME, copied_layout) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get layout")
/* Reset layout values set when dataset is created */
- copied_layout.ops = NULL;
- switch(copied_layout.type) {
+ copied_layout->ops = NULL;
+ switch(copied_layout->type) {
case H5D_COMPACT:
- copied_layout.storage.u.compact.buf = H5MM_xfree(copied_layout.storage.u.compact.buf);
- HDmemset(&copied_layout.storage.u.compact, 0, sizeof(copied_layout.storage.u.compact));
+ copied_layout->storage.u.compact.buf = H5MM_xfree(copied_layout->storage.u.compact.buf);
+ HDmemset(&copied_layout->storage.u.compact, 0, sizeof(copied_layout->storage.u.compact));
break;
case H5D_CONTIGUOUS:
- copied_layout.storage.u.contig.addr = HADDR_UNDEF;
- copied_layout.storage.u.contig.size = 0;
+ copied_layout->storage.u.contig.addr = HADDR_UNDEF;
+ copied_layout->storage.u.contig.size = 0;
break;
case H5D_CHUNKED:
/* Reset chunk size */
- copied_layout.u.chunk.size = 0;
+ copied_layout->u.chunk.size = 0;
/* Reset index info, if the chunk ops are set */
- if(copied_layout.storage.u.chunk.ops)
- /* Reset address and pointer of the array struct for the chunked storage index */
- if(H5D_chunk_idx_reset(&copied_layout.storage.u.chunk, TRUE) < 0)
+ if(copied_layout->storage.u.chunk.ops)
+ /* Reset address and pointer of the array struct for the chunked storage index */
+ if(H5D_chunk_idx_reset(&copied_layout->storage.u.chunk, TRUE) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to reset chunked storage index in dest")
/* Reset chunk index ops */
- copied_layout.storage.u.chunk.ops = NULL;
+ copied_layout->storage.u.chunk.ops = NULL;
break;
case H5D_VIRTUAL:
- copied_layout.storage.u.virt.serial_list_hobjid.addr = HADDR_UNDEF;
- copied_layout.storage.u.virt.serial_list_hobjid.idx = 0;
+ copied_layout->storage.u.virt.serial_list_hobjid.addr = HADDR_UNDEF;
+ copied_layout->storage.u.virt.serial_list_hobjid.idx = 0;
break;
case H5D_LAYOUT_ERROR:
@@ -3367,7 +3369,7 @@ H5D_get_create_plist(H5D_t *dset)
} /* end switch */
/* Set back the (possibly modified) layout property to property list */
- if(H5P_poke(new_plist, H5D_CRT_LAYOUT_NAME, &copied_layout) < 0)
+ if(H5P_poke(new_plist, H5D_CRT_LAYOUT_NAME, copied_layout) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to set layout")
/* Get the fill value property */
@@ -3459,6 +3461,9 @@ done:
if(H5I_dec_app_ref(new_dcpl_id) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "unable to close temporary object")
+ if(copied_layout)
+ copied_layout = (H5O_layout_t *)H5MM_xfree(copied_layout);
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D_get_create_plist() */
diff --git a/src/H5Doh.c b/src/H5Doh.c
index 9abbdff..cd70c56 100644
--- a/src/H5Doh.c
+++ b/src/H5Doh.c
@@ -27,6 +27,7 @@
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free lists */
#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
#include "H5Opkg.h" /* Object headers */
@@ -359,12 +360,12 @@ done:
static herr_t
H5O__dset_bh_info(const H5O_loc_t *loc, hid_t dxpl_id, H5O_t *oh, H5_ih_info_t *bh_info)
{
- H5O_layout_t layout; /* Data storage layout message */
- H5O_efl_t efl; /* External File List message */
+ H5O_layout_t *layout = NULL; /* Data storage layout message */
+ H5O_efl_t efl; /* External File List message */
hbool_t layout_read = FALSE; /* Whether the layout message was read */
hbool_t efl_read = FALSE; /* Whether the external file list message was read */
- htri_t exists; /* Flag if header message of interest exists */
- herr_t ret_value = SUCCEED; /* Return value */
+ htri_t exists; /* Flag if header message of interest exists */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -376,22 +377,24 @@ H5O__dset_bh_info(const H5O_loc_t *loc, hid_t dxpl_id, H5O_t *oh, H5_ih_info_t *
HDassert(bh_info);
/* Get the layout message from the object header */
- if(NULL == H5O_msg_read_oh(loc->file, dxpl_id, oh, H5O_LAYOUT_ID, &layout))
- HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't find layout message")
+ if(NULL == (layout = (H5O_layout_t *)H5MM_calloc(sizeof(H5O_layout_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't get memory for layout")
+ if(NULL == H5O_msg_read_oh(loc->file, dxpl_id, oh, H5O_LAYOUT_ID, layout))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't find layout message")
layout_read = TRUE;
/* Check for chunked dataset storage */
- if(layout.type == H5D_CHUNKED && H5D__chunk_is_space_alloc(&layout.storage)) {
+ if(layout->type == H5D_CHUNKED && H5D__chunk_is_space_alloc(&(layout->storage))) {
/* Get size of chunk index */
- if(H5D__chunk_bh_info(loc, dxpl_id, oh, &layout, &(bh_info->index_size)) < 0)
+ if(H5D__chunk_bh_info(loc, dxpl_id, oh, layout, &(bh_info->index_size)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't determine chunked dataset btree info")
} /* end if */
- else if(layout.type == H5D_VIRTUAL
- && (layout.storage.u.virt.serial_list_hobjid.addr != HADDR_UNDEF)) {
+ else if(layout->type == H5D_VIRTUAL
+ && (layout->storage.u.virt.serial_list_hobjid.addr != HADDR_UNDEF)) {
size_t virtual_heap_size;
/* Get size of global heap object for virtual dataset */
- if(H5HG_get_obj_size(loc->file, dxpl_id, &(layout.storage.u.virt.serial_list_hobjid), &virtual_heap_size) < 0)
+ if(H5HG_get_obj_size(loc->file, dxpl_id, &(layout->storage.u.virt.serial_list_hobjid), &virtual_heap_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get global heap size for virtual dataset mapping")
/* Return heap size */
@@ -400,29 +403,32 @@ H5O__dset_bh_info(const H5O_loc_t *loc, hid_t dxpl_id, H5O_t *oh, H5_ih_info_t *
/* Check for External File List message in the object header */
if((exists = H5O_msg_exists_oh(oh, H5O_EFL_ID)) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "unable to check for EFL message")
+ HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "unable to check for EFL message")
- if(exists && H5D__efl_is_space_alloc(&layout.storage)) {
+ if(exists && H5D__efl_is_space_alloc(&(layout->storage))) {
/* Start with clean EFL info */
HDmemset(&efl, 0, sizeof(efl));
- /* Get External File List message from the object header */
- if(NULL == H5O_msg_read_oh(loc->file, dxpl_id, oh, H5O_EFL_ID, &efl))
- HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't find EFL message")
+ /* Get External File List message from the object header */
+ if(NULL == H5O_msg_read_oh(loc->file, dxpl_id, oh, H5O_EFL_ID, &efl))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't find EFL message")
efl_read = TRUE;
- /* Get size of local heap for EFL message's file list */
- if(H5D__efl_bh_info(loc->file, dxpl_id, &efl, &(bh_info->heap_size)) < 0)
+ /* Get size of local heap for EFL message's file list */
+ if(H5D__efl_bh_info(loc->file, dxpl_id, &efl, &(bh_info->heap_size)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't determine EFL heap info")
} /* end if */
done:
/* Free messages, if they've been read in */
- if(layout_read && H5O_msg_reset(H5O_LAYOUT_ID, &layout) < 0)
+ if(layout_read && H5O_msg_reset(H5O_LAYOUT_ID, layout) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTRESET, FAIL, "unable to reset data storage layout message")
if(efl_read && H5O_msg_reset(H5O_EFL_ID, &efl) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTRESET, FAIL, "unable to reset external file list message")
+ if(layout)
+ layout = (H5O_layout_t *)H5MM_xfree(layout);
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_bh_info() */
diff --git a/src/H5Z.c b/src/H5Z.c
index ef34d7c..de84a9e 100644
--- a/src/H5Z.c
+++ b/src/H5Z.c
@@ -811,8 +811,9 @@ done:
static herr_t
H5Z_prepare_prelude_callback_dcpl(hid_t dcpl_id, hid_t type_id, H5Z_prelude_type_t prelude_type)
{
- hid_t space_id = -1; /* ID for dataspace describing chunk */
- herr_t ret_value = SUCCEED; /* Return value */
+ hid_t space_id = -1; /* ID for dataspace describing chunk */
+ H5O_layout_t *dcpl_layout = NULL; /* Dataset's layout information */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
@@ -822,18 +823,20 @@ H5Z_prepare_prelude_callback_dcpl(hid_t dcpl_id, hid_t type_id, H5Z_prelude_type
/* Check if the property list is non-default */
if(dcpl_id != H5P_DATASET_CREATE_DEFAULT) {
H5P_genplist_t *dc_plist; /* Dataset creation property list object */
- H5O_layout_t dcpl_layout; /* Dataset's layout information */
+
+ if(NULL == (dcpl_layout = (H5O_layout_t *)H5MM_calloc(sizeof(H5O_layout_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't get memory for layout")
/* Get dataset creation property list object */
if(NULL == (dc_plist = (H5P_genplist_t *)H5I_object(dcpl_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get dataset creation property list")
/* Peek at the layout information */
- if(H5P_peek(dc_plist, H5D_CRT_LAYOUT_NAME, &dcpl_layout) < 0)
+ if(H5P_peek(dc_plist, H5D_CRT_LAYOUT_NAME, dcpl_layout) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve layout")
/* Check if the dataset is chunked */
- if(H5D_CHUNKED == dcpl_layout.type) {
+ if(H5D_CHUNKED == dcpl_layout->type) {
H5O_pline_t dcpl_pline; /* Object's I/O pipeline information */
/* Get I/O pipeline information */
@@ -847,9 +850,9 @@ H5Z_prepare_prelude_callback_dcpl(hid_t dcpl_id, hid_t type_id, H5Z_prelude_type
size_t u; /* Local index variable */
/* Create a data space for a chunk & set the extent */
- for(u = 0; u < dcpl_layout.u.chunk.ndims; u++)
- chunk_dims[u] = dcpl_layout.u.chunk.dim[u];
- if(NULL == (space = H5S_create_simple(dcpl_layout.u.chunk.ndims, chunk_dims, NULL)))
+ for(u = 0; u < dcpl_layout->u.chunk.ndims; u++)
+ chunk_dims[u] = dcpl_layout->u.chunk.dim[u];
+ if(NULL == (space = H5S_create_simple(dcpl_layout->u.chunk.ndims, chunk_dims, NULL)))
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace")
/* Get ID for dataspace to pass to filter routines */
@@ -868,6 +871,8 @@ H5Z_prepare_prelude_callback_dcpl(hid_t dcpl_id, hid_t type_id, H5Z_prelude_type
done:
if(space_id > 0 && H5I_dec_ref(space_id) < 0)
HDONE_ERROR(H5E_PLINE, H5E_CANTRELEASE, FAIL, "unable to close dataspace")
+ if(dcpl_layout)
+ dcpl_layout = (H5O_layout_t *)H5MM_xfree(dcpl_layout);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5Z_prepare_prelude_callback_dcpl() */