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-rw-r--r--src/H5D.c20
-rw-r--r--src/H5Dio.c464
-rw-r--r--src/H5Distore.c156
-rw-r--r--src/H5Dprivate.h26
-rw-r--r--src/H5Dseq.c32
-rw-r--r--src/H5FDprivate.h3
-rw-r--r--src/H5Fistore.c156
-rw-r--r--src/H5Fpkg.h16
-rw-r--r--src/H5Fprivate.h36
-rw-r--r--src/H5Fseq.c32
-rw-r--r--src/H5Pdcpl.c50
-rw-r--r--src/H5Pprivate.h2
-rw-r--r--src/H5Smpio.c27
-rw-r--r--src/H5Spkg.h24
-rw-r--r--src/H5Sprivate.h34
-rw-r--r--src/H5Sselect.c108
16 files changed, 623 insertions, 563 deletions
diff --git a/src/H5D.c b/src/H5D.c
index 95801fb..da14a45 100644
--- a/src/H5D.c
+++ b/src/H5D.c
@@ -21,7 +21,6 @@
#include "H5private.h" /* Generic Functions */
#include "H5Dpkg.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
-#include "H5FDprivate.h" /* File drivers */
#include "H5FLprivate.h" /* Free Lists */
#include "H5FOprivate.h" /* File objects */
#include "H5HLprivate.h" /* Local heaps */
@@ -3235,6 +3234,7 @@ done:
herr_t
H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf)
{
+ H5T_vlen_alloc_info_t vl_alloc_info; /* VL allocation info */
herr_t ret_value;
FUNC_ENTER_API(H5Dvlen_reclaim, FAIL)
@@ -3253,8 +3253,12 @@ H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf)
if (TRUE!=H5P_isa_class(plist_id,H5P_DATASET_XFER))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms")
+ /* Get the allocation info */
+ if(H5T_vlen_get_alloc_info(plist_id,&vl_alloc_info)<0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "unable to retrieve VL allocation info");
+
/* Call H5Diterate with args, etc. */
- ret_value=H5Diterate(buf,type_id,space_id,H5T_vlen_reclaim,&plist_id);
+ ret_value=H5Diterate(buf,type_id,space_id,H5T_vlen_reclaim,&vl_alloc_info);
done:
FUNC_LEAVE_API(ret_value)
@@ -3538,7 +3542,6 @@ H5D_set_extent(H5D_t *dset, const hsize_t *size, hid_t dxpl_id)
int rank; /* Dataspace # of dimensions */
herr_t ret_value = SUCCEED; /* Return value */
H5S_t *space = NULL;
- H5P_genplist_t *plist;
int u;
unsigned shrink = 0; /* Flag to indicate a dimension has shrank */
unsigned expand = 0; /* Flag to indicate a dimension has grown */
@@ -3599,16 +3602,23 @@ H5D_set_extent(H5D_t *dset, const hsize_t *size, hid_t dxpl_id)
*-------------------------------------------------------------------------
*/
if(shrink && H5D_CHUNKED == dset->layout.type) {
+ H5P_genplist_t *plist;
+ H5D_dxpl_cache_t dxpl_cache; /* Cached data transfer properties */
+
/* Get the dataset creation property list */
if(NULL == (plist = H5I_object(dset->dcpl_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dset creation property list")
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
/* Remove excess chunks */
- if(H5F_istore_prune_by_extent(dset->ent.file, dxpl_id, &dset->layout, space) < 0)
+ if(H5F_istore_prune_by_extent(dset->ent.file, &dxpl_cache, dxpl_id, &dset->layout, space) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to remove chunks ")
/* Reset the elements outsize the new dimensions, but in existing chunks */
- if(H5F_istore_initialize_by_extent(dset->ent.file, dxpl_id, &dset->layout, plist, space) < 0)
+ if(H5F_istore_initialize_by_extent(dset->ent.file, &dxpl_cache, dxpl_id, &dset->layout, plist, space) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to initialize chunks ")
} /* end if */
} /* end if */
diff --git a/src/H5Dio.c b/src/H5Dio.c
index f1d6890..13c3422 100644
--- a/src/H5Dio.c
+++ b/src/H5Dio.c
@@ -21,7 +21,6 @@
#include "H5private.h" /* Generic Functions */
#include "H5Dpkg.h" /* Dataset functions */
#include "H5Eprivate.h" /* Error handling */
-#include "H5FDprivate.h" /* File drivers */
#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
@@ -79,28 +78,34 @@ static herr_t H5D_write(H5D_t *dataset, const H5T_t *mem_type,
hid_t dset_xfer_plist, const void *buf);
static herr_t
H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
- const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
- H5P_genplist_t *dx_plist, hid_t dxpl_id,
+ const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv,
+ const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
hid_t src_id, hid_t dst_id, void *buf/*out*/);
static herr_t
H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
- const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
- H5P_genplist_t *dx_plist, hid_t dxpl_id,
+ const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv,
+ const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
hid_t src_id, hid_t dst_id, const void *buf);
static herr_t
H5D_chunk_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
- const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
- H5P_genplist_t *dx_plist, hid_t dxpl_id,
+ const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv,
+ const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
hid_t src_id, hid_t dst_id, void *buf/*out*/);
static herr_t
H5D_chunk_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
- const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
- H5P_genplist_t *dx_plist, hid_t dxpl_id,
+ const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv,
+ const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
hid_t src_id, hid_t dst_id, const void *buf);
#ifdef H5_HAVE_PARALLEL
static herr_t
-H5D_io_assist_mpio(H5P_genplist_t *dx_plist, H5FD_mpio_xfer_t xfer_mode,
+H5D_io_assist_mpio(hid_t dxpl_id, H5D_dxpl_cache_t *dxpl_cache,
hbool_t *xfer_mode_changed);
+static herr_t
+H5D_io_restore_mpio(hid_t dxpl_id);
#endif /*H5_HAVE_PARALLEL*/
static herr_t H5D_create_chunk_map(H5D_t *dataset, const H5T_t *mem_type,
const H5S_t *file_space, const H5S_t *mem_space, fm_map *fm);
@@ -271,6 +276,138 @@ done:
} /* H5D_fill() */
+/*--------------------------------------------------------------------------
+ NAME
+ H5D_get_dxpl_cache
+ PURPOSE
+ Get all the values for the DXPL cache.
+ USAGE
+ herr_t H5D_get_dxpl_cache(dxpl_id, cache)
+ hid_t dxpl_id; IN: DXPL to query
+ H5D_dxpl_cache_t *cache;IN/OUT: DXPL cache to fill with values
+ RETURNS
+ Non-negative on success/Negative on failure.
+ DESCRIPTION
+ Query all the values from a DXPL that are needed by internal routines
+ within the library.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5D_get_dxpl_cache(hid_t dxpl_id, H5D_dxpl_cache_t *cache)
+{
+ H5P_genplist_t *dx_plist; /* Data transfer property list */
+ herr_t ret_value=SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5D_get_dxpl_cache,FAIL)
+
+ /* Check args */
+ assert(cache);
+
+ /* Get the dataset transfer property list */
+ if (NULL == (dx_plist = H5I_object(dxpl_id)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list")
+
+ /* Get maximum temporary buffer size */
+ if(H5P_get(dx_plist, H5D_XFER_MAX_TEMP_BUF_NAME, &cache->max_temp_buf)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve maximum temporary buffer size")
+
+ /* Get temporary buffer pointer */
+ if(H5P_get(dx_plist, H5D_XFER_TCONV_BUF_NAME, &cache->tconv_buf)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve temporary buffer pointer")
+
+ /* Get background buffer pointer */
+ if(H5P_get(dx_plist, H5D_XFER_BKGR_BUF_NAME, &cache->bkgr_buf)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer pointer")
+
+ /* Get background buffer type */
+ if(H5P_get(dx_plist, H5D_XFER_BKGR_BUF_TYPE_NAME, &cache->bkgr_buf_type)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer type")
+
+ /* Get B-tree split ratios */
+ if(H5P_get(dx_plist, H5D_XFER_BTREE_SPLIT_RATIO_NAME, &cache->btree_split_ratio)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer type")
+
+ /* Get B-tree split ratios */
+ if(H5P_get(dx_plist, H5D_XFER_BTREE_SPLIT_RATIO_NAME, &cache->btree_split_ratio)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer type")
+
+ /* Get I/O vector size */
+ if(H5P_get(dx_plist, H5D_XFER_HYPER_VECTOR_SIZE_NAME, &cache->vec_size)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve I/O vector size")
+
+#ifdef H5_HAVE_PARALLEL
+ /* Collect Parallel I/O information for possible later use */
+ if(H5P_get(dx_plist, H5D_XFER_IO_XFER_MODE_NAME, &cache->xfer_mode)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve parallel transfer method")
+#endif /*H5_HAVE_PARALLEL*/
+
+ /* Get error detection properties */
+ if(H5P_get(dx_plist, H5D_XFER_EDC_NAME, &cache->err_detect)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve error detection info")
+
+ /* Get filter callback function */
+ if(H5P_get(dx_plist, H5D_XFER_FILTER_CB_NAME, &cache->filter_cb)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve filter callback function")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5D_get_dxpl_cache() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5D_get_dcpl_cache
+ PURPOSE
+ Get all the values for the DCPL cache.
+ USAGE
+ herr_t H5D_get_dcpl_cache(dcpl_id, cache)
+ hid_t dcpl_id; IN: DCPL to query
+ H5D_dcpl_cache_t *cache;IN/OUT: DCPL cache to fill with values
+ RETURNS
+ Non-negative on success/Negative on failure.
+ DESCRIPTION
+ Query all the values from a DCPL that are needed by internal routines
+ within the library.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static herr_t
+H5D_get_dcpl_cache(hid_t dcpl_id, H5D_dcpl_cache_t *cache)
+{
+ H5P_genplist_t *dc_plist; /* Data transfer property list */
+ herr_t ret_value=SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_get_dcpl_cache)
+
+ /* Check args */
+ assert(cache);
+
+ /* Get the dataset transfer property list */
+ if (NULL == (dc_plist = H5I_object(dcpl_id)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset creation property list")
+
+ /* Get I/O pipeline info */
+ if(H5P_get(dc_plist, H5D_CRT_DATA_PIPELINE_NAME, &cache->pline)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve I/O pipeline info")
+
+ /* Get fill value info */
+ if(H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &cache->fill)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve fill value info")
+
+ /* Get fill time info */
+ if(H5P_get(dc_plist, H5D_CRT_FILL_TIME_NAME, &cache->fill_time)<0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve fill time")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5D_get_dcpl_cache() */
+
+
/*-------------------------------------------------------------------------
* Function: H5Dread
*
@@ -516,11 +653,10 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
H5S_conv_t *sconv=NULL; /*space conversion funcs*/
hbool_t use_par_opt_io=FALSE; /* Whether the 'optimized' I/O routines with be parallel */
#ifdef H5_HAVE_PARALLEL
- H5FD_mpio_xfer_t xfer_mode; /*xfer_mode for this request */
hbool_t xfer_mode_changed=FALSE; /* Whether the transfer mode was changed */
#endif /*H5_HAVE_PARALLEL*/
- H5P_genplist_t *dx_plist=NULL; /* Data transfer property list */
- H5P_genplist_t *dc_plist; /* Dataset creation roperty list */
+ H5D_dxpl_cache_t dxpl_cache; /* Data transfer property cache */
+ H5D_dcpl_cache_t dcpl_cache; /* Dataset creation property cache */
unsigned sconv_flags=0; /* Flags for the space conversion */
herr_t ret_value = SUCCEED; /* Return value */
@@ -531,14 +667,6 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
assert(mem_type);
assert(buf);
- /* Get the dataset's creation property list */
- if (NULL == (dc_plist = H5I_object(dataset->dcpl_id)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset creation property list")
-
- /* Get the dataset transfer property list */
- if (NULL == (dx_plist = H5I_object(dxpl_id)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset creation property list")
-
if (!file_space)
file_space = dataset->space;
if (!mem_space)
@@ -547,17 +675,22 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "src dataspace has invalid selection")
H5_ASSIGN_OVERFLOW(nelmts,snelmts,hssize_t,hsize_t);
-#ifdef H5_HAVE_PARALLEL
- /* Collect Parallel I/O information for possible later use */
- xfer_mode=(H5FD_mpio_xfer_t)H5P_peek_unsigned(dx_plist, H5D_XFER_IO_XFER_MODE_NAME);
+ /* Fill the DCPL cache values for later use */
+ if (H5D_get_dcpl_cache(dataset->dcpl_id,&dcpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dcpl cache")
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
+#ifdef H5_HAVE_PARALLEL
/* Collective access is not permissible without a MPI based VFD */
- if (xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
+ if (dxpl_cache.xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "collective access for MPI-based drivers only")
/* Set the "parallel I/O possible" flag, for H5S_find(), if we are doing collective I/O */
/* (Don't set the parallel I/O possible flag for the MPI-posix driver, since it doesn't do real collective I/O) */
- if (H5S_mpi_opt_types_g && xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPIPOSIX(dataset->ent.file))
+ if (H5S_mpi_opt_types_g && dxpl_cache.xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPIPOSIX(dataset->ent.file))
sconv_flags |= H5S_CONV_PAR_IO_POSSIBLE;
#endif /*H5_HAVE_PARALLEL*/
@@ -576,29 +709,23 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
*/
if(nelmts > 0 && dataset->efl.nused==0 && dataset->layout.type!=H5D_COMPACT
&& dataset->layout.addr==HADDR_UNDEF) {
- H5O_fill_t fill={NULL,0,NULL}; /* Fill value info */
- H5D_fill_time_t fill_time; /* When to write the fill values */
H5D_fill_value_t fill_status; /* Whether/How the fill value is defined */
/* Retrieve dataset's fill-value properties */
- if(H5P_fill_value_defined(dc_plist, &fill_status)<0)
+ if(H5P_is_fill_value_defined(&dcpl_cache.fill, &fill_status)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't tell if fill value defined")
- if((fill_status==H5D_FILL_VALUE_DEFAULT || fill_status==H5D_FILL_VALUE_USER_DEFINED)
- && H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL,"can't retrieve fill value")
- if(H5P_get(dc_plist, H5D_CRT_FILL_TIME_NAME, &fill_time) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL,"can't retrieve fill time")
/* Should be impossible, but check anyway... */
- if(fill_status == H5D_FILL_VALUE_UNDEFINED && (fill_time == H5D_FILL_TIME_ALLOC || fill_time == H5D_FILL_TIME_IFSET))
+ if(fill_status == H5D_FILL_VALUE_UNDEFINED &&
+ (dcpl_cache.fill_time == H5D_FILL_TIME_ALLOC || dcpl_cache.fill_time == H5D_FILL_TIME_IFSET))
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "read failed: dataset doesn't exist, no data can be read")
/* If we're never going to fill this dataset, just leave the junk in the user's buffer */
- if(fill_time == H5D_FILL_TIME_NEVER)
+ if(dcpl_cache.fill_time == H5D_FILL_TIME_NEVER)
HGOTO_DONE(SUCCEED)
/* Go fill the user's selection with the dataset's fill value */
- if(H5D_fill(fill.buf,dataset->type,buf,mem_type,mem_space, dxpl_id)<0)
+ if(H5D_fill(dcpl_cache.fill.buf,dataset->type,buf,mem_type,mem_space,dxpl_id)<0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "filling buf failed")
else
HGOTO_DONE(SUCCEED)
@@ -645,33 +772,26 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
#ifdef H5_HAVE_PARALLEL
/* Don't reset the transfer mode if we can't or won't use it */
if(!use_par_opt_io || !H5T_path_noop(tpath))
- H5D_io_assist_mpio(dx_plist, xfer_mode, &xfer_mode_changed);
+ H5D_io_assist_mpio(dxpl_id, &dxpl_cache, &xfer_mode_changed);
#endif /*H5_HAVE_PARALLEL*/
/* Determine correct I/O routine to invoke */
if(dataset->layout.type!=H5D_CHUNKED) {
- if(H5D_contig_read(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
- dx_plist, dxpl_id, src_id, dst_id, buf)<0)
+ if(H5D_contig_read(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, &dcpl_cache,
+ &dxpl_cache, dxpl_id, src_id, dst_id, buf)<0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data")
} /* end if */
else {
- if(H5D_chunk_read(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
- dx_plist, dxpl_id, src_id, dst_id, buf)<0)
+ if(H5D_chunk_read(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, &dcpl_cache,
+ &dxpl_cache, dxpl_id, src_id, dst_id, buf)<0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data")
} /* end else */
done:
#ifdef H5_HAVE_PARALLEL
- /* restore xfer_mode due to the kludge */
- if (xfer_mode_changed) {
-#ifdef H5D_DEBUG
- if (H5DEBUG(D))
- fprintf (H5DEBUG(D), "H5D: xfer_mode was COLLECTIVE, restored to INDEPENDENT\n");
-#endif
- xfer_mode = H5FD_MPIO_COLLECTIVE;
- if(H5P_set (dx_plist, H5D_XFER_IO_XFER_MODE_NAME, &xfer_mode) < 0)
- HDONE_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set transfer mode")
- } /* end if */
+ /* Restore xfer_mode due to the kludge */
+ if (xfer_mode_changed)
+ H5D_io_restore_mpio(dxpl_id);
#endif /*H5_HAVE_PARALLEL*/
if (src_id >= 0) {
if(H5I_dec_ref(src_id)<0)
@@ -741,11 +861,10 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
H5S_conv_t *sconv=NULL; /*space conversion funcs*/
hbool_t use_par_opt_io=FALSE; /* Whether the 'optimized' I/O routines with be parallel */
#ifdef H5_HAVE_PARALLEL
- H5FD_mpio_xfer_t xfer_mode; /*xfer_mode for this request */
hbool_t xfer_mode_changed=FALSE; /* Whether the transfer mode was changed */
#endif /*H5_HAVE_PARALLEL*/
- H5P_genplist_t *dx_plist=NULL; /* Data transfer property list */
- H5P_genplist_t *dc_plist; /* Dataset creation roperty list */
+ H5D_dxpl_cache_t dxpl_cache; /* Data transfer property cache */
+ H5D_dcpl_cache_t dcpl_cache; /* Dataset creation property cache */
unsigned sconv_flags=0; /* Flags for the space conversion */
herr_t ret_value = SUCCEED; /* Return value */
@@ -776,13 +895,13 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
if (0==(H5F_get_intent(dataset->ent.file) & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "no write intent on file")
- /* Get the dataset's creation property list */
- if (NULL == (dc_plist = H5I_object(dataset->dcpl_id)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset creation property list")
+ /* Fill the DCPL cache values for later use */
+ if (H5D_get_dcpl_cache(dataset->dcpl_id,&dcpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dcpl cache")
- /* Get the dataset transfer property list */
- if (NULL == (dx_plist = H5I_object(dxpl_id)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset creation property list")
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
if (!file_space)
file_space = dataset->space;
@@ -793,16 +912,13 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
H5_ASSIGN_OVERFLOW(nelmts,snelmts,hssize_t,hsize_t);
#ifdef H5_HAVE_PARALLEL
- /* Collect Parallel I/O information for possible later use */
- xfer_mode=(H5FD_mpio_xfer_t)H5P_peek_unsigned(dx_plist, H5D_XFER_IO_XFER_MODE_NAME);
-
/* Collective access is not permissible without a MPI based VFD */
- if (xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
+ if (dxpl_cache.xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "collective access for MPI-based driver only")
/* Set the "parallel I/O possible" flag, for H5S_find(), if we are doing collective I/O */
/* (Don't set the parallel I/O possible flag for the MPI-posix driver, since it doesn't do real collective I/O) */
- if (H5S_mpi_opt_types_g && xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPIPOSIX(dataset->ent.file))
+ if (H5S_mpi_opt_types_g && dxpl_cache.xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPIPOSIX(dataset->ent.file))
sconv_flags |= H5S_CONV_PAR_IO_POSSIBLE;
#endif /*H5_HAVE_PARALLEL*/
@@ -874,19 +990,20 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
#ifdef H5_HAVE_PARALLEL
/* Don't reset the transfer mode if we can't or won't use it */
- if(!use_par_opt_io || !H5T_path_noop(tpath))
- H5D_io_assist_mpio(dx_plist, xfer_mode, &xfer_mode_changed);
+ if(!use_par_opt_io || !H5T_path_noop(tpath)) {
+ H5D_io_assist_mpio(dxpl_id, &dxpl_cache, &xfer_mode_changed);
+ } /* end if */
#endif /*H5_HAVE_PARALLEL*/
/* Determine correct I/O routine to invoke */
if(dataset->layout.type!=H5D_CHUNKED) {
- if(H5D_contig_write(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
- dx_plist, dxpl_id, src_id, dst_id, buf)<0)
+ if(H5D_contig_write(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, &dcpl_cache,
+ &dxpl_cache, dxpl_id, src_id, dst_id, buf)<0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")
} /* end if */
else {
- if(H5D_chunk_write(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
- dx_plist, dxpl_id, src_id, dst_id, buf)<0)
+ if(H5D_chunk_write(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, &dcpl_cache,
+ &dxpl_cache, dxpl_id, src_id, dst_id, buf)<0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")
} /* end else */
@@ -907,16 +1024,9 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
done:
#ifdef H5_HAVE_PARALLEL
- /* restore xfer_mode due to the kludge */
- if (xfer_mode_changed) {
-#ifdef H5D_DEBUG
- if (H5DEBUG(D))
- fprintf (H5DEBUG(D), "H5D: xfer_mode was COLLECTIVE, restored to INDEPENDENT\n");
-#endif
- xfer_mode = H5FD_MPIO_COLLECTIVE;
- if(H5P_set (dx_plist, H5D_XFER_IO_XFER_MODE_NAME, &xfer_mode) < 0)
- HDONE_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set transfer mode")
- } /* end if */
+ /* Restore xfer_mode due to the kludge */
+ if (xfer_mode_changed)
+ H5D_io_restore_mpio(dxpl_id);
#endif /*H5_HAVE_PARALLEL*/
if (src_id >= 0) {
if(H5I_dec_ref(src_id)<0)
@@ -951,8 +1061,9 @@ done:
static herr_t
H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
const H5S_t *mem_space, const H5S_t *file_space, H5T_path_t *tpath,
- H5S_conv_t *sconv, H5P_genplist_t *dc_plist, H5P_genplist_t *dx_plist,
- hid_t dxpl_id, hid_t src_id, hid_t dst_id, void *buf/*out*/)
+ H5S_conv_t *sconv, const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ hid_t src_id, hid_t dst_id, void *buf/*out*/)
{
herr_t status; /*function return status*/
#ifdef H5S_DEBUG
@@ -989,8 +1100,8 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
assert(dataset->layout.addr!=HADDR_UNDEF || dataset->efl.nused>0 ||
dataset->layout.type==H5D_COMPACT);
status = (sconv->read)(dataset->ent.file, &(dataset->layout),
- dc_plist, (H5D_storage_t *)&(dataset->efl), H5T_get_size(dataset->type),
- file_space, mem_space, dxpl_id, buf/*out*/);
+ dcpl_cache, (H5D_storage_t *)&(dataset->efl), H5T_get_size(dataset->type),
+ file_space, mem_space, dxpl_cache, dxpl_id, buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].read_timer), &timer);
sconv->stats[1].read_nbytes += nelmts * H5T_get_size(dataset->type);
@@ -1012,7 +1123,7 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
/* Compute element sizes and other parameters */
src_type_size = H5T_get_size(dataset->type);
dst_type_size = H5T_get_size(mem_type);
- target_size = H5P_peek_size_t(dx_plist,H5D_XFER_MAX_TEMP_BUF_NAME);
+ target_size = dxpl_cache->max_temp_buf;
/* XXX: This could cause a problem if the user sets their buffer size
* to the same size as the default, and then the dataset elements are
* too large for the buffer... - QAK
@@ -1048,19 +1159,18 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
H5T_bkg_t path_bkg; /* Type conversion's background info */
/* Retrieve the bkgr buffer property */
- if(H5P_get(dx_plist, H5D_XFER_BKGR_BUF_TYPE_NAME, &need_bkg)<0)
- HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer type")
+ need_bkg=dxpl_cache->bkgr_buf_type;
path_bkg = H5T_path_bkg(tpath);
need_bkg = MAX(path_bkg, need_bkg);
} else {
need_bkg = H5T_BKG_NO; /*never needed even if app says yes*/
} /* end else */
- if (NULL==(tconv_buf=H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))) {
+ if (NULL==(tconv_buf=dxpl_cache->tconv_buf)) {
/* Allocate temporary buffer */
if((tconv_buf=H5FL_BLK_MALLOC(type_conv,target_size))==NULL)
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion")
} /* end if */
- if (need_bkg && NULL==(bkg_buf=H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))) {
+ if (need_bkg && NULL==(bkg_buf=dxpl_cache->bkgr_buf)) {
/* Allocate background buffer */
H5_CHECK_OVERFLOW((request_nelmts*dst_type_size),hsize_t,size_t);
if((bkg_buf=H5FL_BLK_CALLOC(type_conv,(size_t)(request_nelmts*dst_type_size)))==NULL)
@@ -1085,8 +1195,8 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
assert(dataset->layout.addr!=HADDR_UNDEF || dataset->efl.nused>0 ||
dataset->layout.type==H5D_COMPACT);
n = H5S_select_fgath(dataset->ent.file, &(dataset->layout),
- dc_plist, (H5D_storage_t *)&(dataset->efl), src_type_size, file_space,
- &file_iter, smine_nelmts, dxpl_id, tconv_buf/*out*/);
+ dcpl_cache, (H5D_storage_t *)&(dataset->efl), src_type_size, file_space,
+ &file_iter, smine_nelmts, dxpl_cache, dxpl_id, tconv_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].gath_timer), &timer);
@@ -1101,7 +1211,7 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
H5_timer_begin(&timer);
#endif
n = H5S_select_mgath(buf, dst_type_size, mem_space, &bkg_iter,
- smine_nelmts, dxpl_id, bkg_buf/*out*/);
+ smine_nelmts, dxpl_cache, bkg_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].bkg_timer), &timer);
sconv->stats[1].bkg_nbytes += n * dst_type_size;
@@ -1124,7 +1234,7 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
H5_timer_begin(&timer);
#endif
status = H5S_select_mscat(tconv_buf, dst_type_size, mem_space,
- &mem_iter, smine_nelmts, dxpl_id, buf/*out*/);
+ &mem_iter, smine_nelmts, dxpl_cache, buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].scat_timer), &timer);
sconv->stats[1].scat_nbytes += smine_nelmts * dst_type_size;
@@ -1150,10 +1260,9 @@ done:
HDONE_ERROR (H5E_DATASET, H5E_CANTFREE, FAIL, "Can't release selection iterator")
} /* end if */
- assert(dx_plist);
- if (tconv_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))
+ if (tconv_buf && NULL==dxpl_cache->tconv_buf)
H5FL_BLK_FREE(type_conv,tconv_buf);
- if (bkg_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))
+ if (bkg_buf && NULL==dxpl_cache->bkgr_buf)
H5FL_BLK_FREE(type_conv,bkg_buf);
FUNC_LEAVE_NOAPI(ret_value)
@@ -1179,8 +1288,9 @@ done:
/* ARGSUSED */
static herr_t
H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
- const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
- H5P_genplist_t *dx_plist, hid_t dxpl_id,
+ const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv,
+ const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
hid_t src_id, hid_t dst_id, const void *buf)
{
herr_t status; /*function return status*/
@@ -1215,8 +1325,8 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
H5_timer_begin(&timer);
#endif
status = (sconv->write)(dataset->ent.file, &(dataset->layout),
- dc_plist, (H5D_storage_t *)&(dataset->efl), H5T_get_size(dataset->type),
- file_space, mem_space, dxpl_id, buf);
+ dcpl_cache, (H5D_storage_t *)&(dataset->efl), H5T_get_size(dataset->type),
+ file_space, mem_space, dxpl_cache, dxpl_id, buf);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[0].write_timer), &timer);
sconv->stats[0].write_nbytes += nelmts * H5T_get_size(mem_type);
@@ -1238,7 +1348,7 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
/* Compute element sizes and other parameters */
src_type_size = H5T_get_size(mem_type);
dst_type_size = H5T_get_size(dataset->type);
- target_size = H5P_peek_size_t(dx_plist,H5D_XFER_MAX_TEMP_BUF_NAME);
+ target_size = dxpl_cache->max_temp_buf;
/* XXX: This could cause a problem if the user sets their buffer size
* to the same size as the default, and then the dataset elements are
* too large for the buffer... - QAK
@@ -1278,19 +1388,18 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
H5T_bkg_t path_bkg; /* Type conversion's background info */
/* Retrieve the bkgr buffer property */
- if(H5P_get(dx_plist, H5D_XFER_BKGR_BUF_TYPE_NAME, &need_bkg)<0)
- HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer type")
+ need_bkg=dxpl_cache->bkgr_buf_type;
path_bkg = H5T_path_bkg(tpath);
need_bkg = MAX (path_bkg, need_bkg);
} else {
need_bkg = H5T_BKG_NO; /*never needed even if app says yes*/
} /* end else */
- if (NULL==(tconv_buf=H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))) {
+ if (NULL==(tconv_buf=dxpl_cache->tconv_buf)) {
/* Allocate temporary buffer */
if((tconv_buf=H5FL_BLK_MALLOC(type_conv,target_size))==NULL)
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion")
} /* end if */
- if (need_bkg && NULL==(bkg_buf=H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))) {
+ if (need_bkg && NULL==(bkg_buf=dxpl_cache->bkgr_buf)) {
/* Allocate background buffer */
H5_CHECK_OVERFLOW((request_nelmts*dst_type_size),hsize_t,size_t);
if((bkg_buf=H5FL_BLK_CALLOC(type_conv,(size_t)(request_nelmts*dst_type_size)))==NULL)
@@ -1312,7 +1421,7 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
H5_timer_begin(&timer);
#endif
n = H5S_select_mgath(buf, src_type_size, mem_space, &mem_iter,
- smine_nelmts, dxpl_id, tconv_buf/*out*/);
+ smine_nelmts, dxpl_cache, tconv_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[0].gath_timer), &timer);
sconv->stats[0].gath_nbytes += n * src_type_size;
@@ -1326,8 +1435,8 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
H5_timer_begin(&timer);
#endif
n = H5S_select_fgath(dataset->ent.file, &(dataset->layout),
- dc_plist, (H5D_storage_t *)&(dataset->efl), dst_type_size, file_space,
- &bkg_iter, smine_nelmts, dxpl_id, bkg_buf/*out*/);
+ dcpl_cache, (H5D_storage_t *)&(dataset->efl), dst_type_size, file_space,
+ &bkg_iter, smine_nelmts, dxpl_cache, dxpl_id, bkg_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[0].bkg_timer), &timer);
@@ -1351,8 +1460,8 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
H5_timer_begin(&timer);
#endif
status = H5S_select_fscat(dataset->ent.file, &(dataset->layout),
- dc_plist, (H5D_storage_t *)&(dataset->efl), dst_type_size, file_space, &file_iter,
- smine_nelmts, dxpl_id, tconv_buf);
+ dcpl_cache, (H5D_storage_t *)&(dataset->efl), dst_type_size, file_space, &file_iter,
+ smine_nelmts, dxpl_cache, dxpl_id, tconv_buf);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[0].scat_timer), &timer);
@@ -1378,10 +1487,9 @@ done:
HDONE_ERROR (H5E_DATASET, H5E_CANTFREE, FAIL, "Can't release selection iterator")
} /* end if */
- assert(dx_plist);
- if (tconv_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))
+ if (tconv_buf && NULL==dxpl_cache->tconv_buf)
H5FL_BLK_FREE(type_conv,tconv_buf);
- if (bkg_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))
+ if (bkg_buf && NULL==dxpl_cache->bkgr_buf)
H5FL_BLK_FREE(type_conv,bkg_buf);
FUNC_LEAVE_NOAPI(ret_value)
@@ -1411,8 +1519,10 @@ H5D_chunk_read(hsize_t
UNUSED
#endif /* NDEBUG */
nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
- const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
- H5P_genplist_t *dx_plist, hid_t dxpl_id, hid_t src_id, hid_t dst_id, void *buf/*out*/)
+ const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv,
+ const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ hid_t src_id, hid_t dst_id, void *buf/*out*/)
{
fm_map fm; /* File<->memory mapping */
H5TB_NODE *chunk_node; /* Current node in chunk TBBT */
@@ -1481,8 +1591,8 @@ UNUSED
/* Perform the actual read operation */
status = (sconv->read)(dataset->ent.file, &(dataset->layout),
- dc_plist, &store, H5T_get_size(dataset->type),
- chunk_info->fspace, chunk_info->mspace, dxpl_id, buf);
+ dcpl_cache, &store, H5T_get_size(dataset->type),
+ chunk_info->fspace, chunk_info->mspace, dxpl_cache, dxpl_id, buf);
/* Check return value from optimized read */
if (status<0)
@@ -1509,7 +1619,7 @@ UNUSED
/* Compute element sizes and other parameters */
src_type_size = H5T_get_size(dataset->type);
dst_type_size = H5T_get_size(mem_type);
- target_size = H5P_peek_size_t(dx_plist,H5D_XFER_MAX_TEMP_BUF_NAME);
+ target_size = dxpl_cache->max_temp_buf;
/* XXX: This could cause a problem if the user sets their buffer size
* to the same size as the default, and then the dataset elements are
* too large for the buffer... - QAK
@@ -1534,19 +1644,18 @@ UNUSED
H5T_bkg_t path_bkg; /* Type conversion's background info */
/* Retrieve the bkgr buffer property */
- if(H5P_get(dx_plist, H5D_XFER_BKGR_BUF_TYPE_NAME, &need_bkg)<0)
- HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer type")
+ need_bkg=dxpl_cache->bkgr_buf_type;
path_bkg = H5T_path_bkg(tpath);
need_bkg = MAX(path_bkg, need_bkg);
} else {
need_bkg = H5T_BKG_NO; /*never needed even if app says yes*/
} /* end else */
- if (NULL==(tconv_buf=H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))) {
+ if (NULL==(tconv_buf=dxpl_cache->tconv_buf)) {
/* Allocate temporary buffer */
if((tconv_buf=H5FL_BLK_MALLOC(type_conv,target_size))==NULL)
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion")
} /* end if */
- if (need_bkg && NULL==(bkg_buf=H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))) {
+ if (need_bkg && NULL==(bkg_buf=dxpl_cache->bkgr_buf)) {
/* Allocate background buffer */
H5_CHECK_OVERFLOW((request_nelmts*dst_type_size),hsize_t,size_t);
if((bkg_buf=H5FL_BLK_CALLOC(type_conv,(size_t)(request_nelmts*dst_type_size)))==NULL)
@@ -1602,8 +1711,8 @@ UNUSED
assert(dataset->layout.addr!=HADDR_UNDEF || dataset->efl.nused>0 ||
dataset->layout.type==H5D_COMPACT);
n = H5S_select_fgath(dataset->ent.file, &(dataset->layout),
- dc_plist, &store, src_type_size, chunk_info->fspace,
- &file_iter, smine_nelmts, dxpl_id, tconv_buf/*out*/);
+ dcpl_cache, &store, src_type_size, chunk_info->fspace,
+ &file_iter, smine_nelmts, dxpl_cache, dxpl_id, tconv_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].gath_timer), &timer);
@@ -1618,7 +1727,7 @@ UNUSED
H5_timer_begin(&timer);
#endif
n = H5S_select_mgath(buf, dst_type_size, chunk_info->mspace, &bkg_iter,
- smine_nelmts, dxpl_id, bkg_buf/*out*/);
+ smine_nelmts, dxpl_cache, bkg_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].bkg_timer), &timer);
sconv->stats[1].bkg_nbytes += n * dst_type_size;
@@ -1642,7 +1751,7 @@ UNUSED
H5_timer_begin(&timer);
#endif
status = H5S_select_mscat(tconv_buf, dst_type_size, chunk_info->mspace,
- &mem_iter, smine_nelmts, dxpl_id, buf/*out*/);
+ &mem_iter, smine_nelmts, dxpl_cache, buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].scat_timer), &timer);
sconv->stats[1].scat_nbytes += smine_nelmts * dst_type_size;
@@ -1674,10 +1783,9 @@ UNUSED
} /* end while */
done:
- assert(dx_plist);
- if (tconv_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))
+ if (tconv_buf && NULL==dxpl_cache->tconv_buf)
H5FL_BLK_FREE(type_conv,tconv_buf);
- if (bkg_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))
+ if (bkg_buf && NULL==dxpl_cache->bkgr_buf)
H5FL_BLK_FREE(type_conv,bkg_buf);
/* Release selection iterators, if necessary */
@@ -1725,8 +1833,9 @@ H5D_chunk_write(hsize_t
UNUSED
#endif /* NDEBUG */
nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
- const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
- H5P_genplist_t *dx_plist, hid_t dxpl_id,
+ const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv,
+ const H5D_dcpl_cache_t *dcpl_cache,
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
hid_t src_id, hid_t dst_id, const void *buf)
{
fm_map fm; /* File<->memory mapping */
@@ -1819,8 +1928,8 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
/* Perform the actual write operation */
status = (sconv->write)(dataset->ent.file, &(dataset->layout),
- dc_plist, &store, H5T_get_size(dataset->type),
- chunk_info->fspace, chunk_info->mspace, dxpl_id, buf);
+ dcpl_cache, &store, H5T_get_size(dataset->type),
+ chunk_info->fspace, chunk_info->mspace, dxpl_cache, dxpl_id, buf);
/* Check return value from optimized write */
if (status<0)
@@ -1863,7 +1972,7 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
/* Compute element sizes and other parameters */
src_type_size = H5T_get_size(mem_type);
dst_type_size = H5T_get_size(dataset->type);
- target_size = H5P_peek_size_t(dx_plist,H5D_XFER_MAX_TEMP_BUF_NAME);
+ target_size = dxpl_cache->max_temp_buf;
/* XXX: This could cause a problem if the user sets their buffer size
* to the same size as the default, and then the dataset elements are
* too large for the buffer... - QAK
@@ -1892,19 +2001,18 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
H5T_bkg_t path_bkg; /* Type conversion's background info */
/* Retrieve the bkgr buffer property */
- if(H5P_get(dx_plist, H5D_XFER_BKGR_BUF_TYPE_NAME, &need_bkg)<0)
- HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve background buffer type")
+ need_bkg=dxpl_cache->bkgr_buf_type;
path_bkg = H5T_path_bkg(tpath);
need_bkg = MAX (path_bkg, need_bkg);
} else {
need_bkg = H5T_BKG_NO; /*never needed even if app says yes*/
} /* end else */
- if (NULL==(tconv_buf=H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))) {
+ if (NULL==(tconv_buf=dxpl_cache->tconv_buf)) {
/* Allocate temporary buffer */
if((tconv_buf=H5FL_BLK_MALLOC(type_conv,target_size))==NULL)
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion")
} /* end if */
- if (need_bkg && NULL==(bkg_buf=H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))) {
+ if (need_bkg && NULL==(bkg_buf=dxpl_cache->bkgr_buf)) {
/* Allocate background buffer */
H5_CHECK_OVERFLOW((request_nelmts*dst_type_size),hsize_t,size_t);
if((bkg_buf=H5FL_BLK_CALLOC(type_conv,(size_t)(request_nelmts*dst_type_size)))==NULL)
@@ -1957,7 +2065,7 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
H5_timer_begin(&timer);
#endif
n = H5S_select_mgath(buf, src_type_size, chunk_info->mspace, &mem_iter,
- smine_nelmts, dxpl_id, tconv_buf/*out*/);
+ smine_nelmts, dxpl_cache, tconv_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[1].gath_timer), &timer);
@@ -1972,8 +2080,8 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
H5_timer_begin(&timer);
#endif
n = H5S_select_fgath(dataset->ent.file, &(dataset->layout),
- dc_plist, &store, dst_type_size, chunk_info->fspace,
- &bkg_iter, smine_nelmts, dxpl_id, bkg_buf/*out*/);
+ dcpl_cache, &store, dst_type_size, chunk_info->fspace,
+ &bkg_iter, smine_nelmts, dxpl_cache, dxpl_id, bkg_buf/*out*/);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[0].bkg_timer), &timer);
@@ -1998,8 +2106,8 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
H5_timer_begin(&timer);
#endif
status = H5S_select_fscat(dataset->ent.file, &(dataset->layout),
- dc_plist, &store, dst_type_size, chunk_info->fspace,
- &file_iter, smine_nelmts, dxpl_id, tconv_buf);
+ dcpl_cache, &store, dst_type_size, chunk_info->fspace,
+ &file_iter, smine_nelmts, dxpl_cache, dxpl_id, tconv_buf);
#ifdef H5S_DEBUG
H5_timer_end(&(sconv->stats[0].scat_timer), &timer);
@@ -2032,10 +2140,9 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
} /* end while */
done:
- assert(dx_plist);
- if (tconv_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_TCONV_BUF_NAME))
+ if (tconv_buf && NULL==dxpl_cache->tconv_buf)
H5FL_BLK_FREE(type_conv,tconv_buf);
- if (bkg_buf && NULL==H5P_peek_voidp(dx_plist,H5D_XFER_BKGR_BUF_NAME))
+ if (bkg_buf && NULL==dxpl_cache->bkgr_buf)
H5FL_BLK_FREE(type_conv,bkg_buf);
/* Release selection iterators, if necessary */
@@ -2079,7 +2186,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5D_io_assist_mpio(H5P_genplist_t *dx_plist, H5FD_mpio_xfer_t xfer_mode,
+H5D_io_assist_mpio(hid_t dxpl_id, H5D_dxpl_cache_t *dxpl_cache,
hbool_t *xfer_mode_changed)
{
herr_t ret_value = SUCCEED; /*return value */
@@ -2091,25 +2198,68 @@ H5D_io_assist_mpio(H5P_genplist_t *dx_plist, H5FD_mpio_xfer_t xfer_mode,
* request according to the MPI collective specification.
* Do the collective request via independent mode.
*/
- if (xfer_mode==H5FD_MPIO_COLLECTIVE) {
+ if (dxpl_cache->xfer_mode==H5FD_MPIO_COLLECTIVE) {
+ H5P_genplist_t *dx_plist; /* Data transer property list */
+
+ /* Get the dataset transfer property list */
+ if (NULL == (dx_plist = H5I_object(dxpl_id)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset creation property list")
+
/* Kludge: change the xfer_mode to independent, handle the request,
* then xfer_mode before return.
* Better way is to get a temporary data_xfer property with
* INDEPENDENT xfer_mode and pass it downwards.
*/
- xfer_mode = H5FD_MPIO_INDEPENDENT;
- if(H5P_set (dx_plist, H5D_XFER_IO_XFER_MODE_NAME, &xfer_mode) < 0)
+ dxpl_cache->xfer_mode = H5FD_MPIO_INDEPENDENT;
+ if(H5P_set (dx_plist, H5D_XFER_IO_XFER_MODE_NAME, &dxpl_cache->xfer_mode) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set transfer mode")
*xfer_mode_changed=TRUE; /* restore it before return */
-#ifdef H5D_DEBUG
- if (H5DEBUG(D))
- fprintf(H5DEBUG(D), "H5D: Cannot handle this COLLECTIVE write request. Do it via INDEPENDENT calls\n");
-#endif
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
-}
+} /* end H5D_io_assist_mpio() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_io_restore_mpio
+ *
+ * Purpose: Common logic for restoring MPI transfer mode
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Friday, February 6, 2004
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_io_restore_mpio(hid_t dxpl_id)
+{
+ H5P_genplist_t *dx_plist; /* Data transer property list */
+ H5FD_mpio_xfer_t xfer_mode; /*xfer_mode for this request */
+ herr_t ret_value = SUCCEED; /*return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_io_restore_mpio)
+
+ /* Get the dataset transfer property list */
+ if (NULL == (dx_plist = H5I_object(dxpl_id)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset creation property list")
+
+ /* Kludge: change the xfer_mode to independent, handle the request,
+ * then xfer_mode before return.
+ * Better way is to get a temporary data_xfer property with
+ * INDEPENDENT xfer_mode and pass it downwards.
+ */
+ xfer_mode = H5FD_MPIO_COLLECTIVE;
+ if(H5P_set (dx_plist, H5D_XFER_IO_XFER_MODE_NAME, &xfer_mode) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set transfer mode")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_io_restore_mpio() */
#endif /*H5_HAVE_PARALLEL*/
diff --git a/src/H5Distore.c b/src/H5Distore.c
index b726c68..f8ae032 100644
--- a/src/H5Distore.c
+++ b/src/H5Distore.c
@@ -910,7 +910,8 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_flush_entry(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t reset)
+H5F_istore_flush_entry(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t reset)
{
herr_t ret_value=SUCCEED; /*return value */
H5F_istore_ud1_t udata; /*pass through B-tree */
@@ -939,10 +940,6 @@ H5F_istore_flush_entry(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t res
/* Should the chunk be filtered before writing it to disk? */
if (ent->pline && ent->pline->nused) {
- H5P_genplist_t *plist; /* Data xfer property list */
- H5Z_cb_t cb_struct;
- H5Z_EDC_t edc;
-
if (!reset) {
/*
* Copy the chunk to a new buffer before running it through
@@ -966,17 +963,8 @@ H5F_istore_flush_entry(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t res
point_of_no_return = TRUE;
ent->chunk = NULL;
}
- /* Don't know whether we should involve transfer property list. So
- * just pass in H5Z_ENABLE_EDC and default callback setting for data
- * read. */
- if (NULL == (plist = H5P_object_verify(dxpl_id,H5P_DATASET_XFER)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list");
- if(H5P_get(plist,H5D_XFER_EDC_NAME,&edc)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get edc information");
- if(H5P_get(plist,H5D_XFER_FILTER_CB_NAME,&cb_struct)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get filter callback struct");
- if (H5Z_pipeline(ent->pline, 0, &(udata.key.filter_mask), edc,
- cb_struct, &(udata.key.nbytes), &alloc, &buf)<0) {
+ if (H5Z_pipeline(ent->pline, 0, &(udata.key.filter_mask), dxpl_cache->err_detect,
+ dxpl_cache->filter_cb, &(udata.key.nbytes), &alloc, &buf)<0) {
HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL,
"output pipeline failed");
}
@@ -1046,7 +1034,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_preempt(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t * ent, hbool_t flush)
+H5F_istore_preempt(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, H5F_rdcc_ent_t * ent, hbool_t flush)
{
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
herr_t ret_value=SUCCEED; /* Return value */
@@ -1060,7 +1048,7 @@ H5F_istore_preempt(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t * ent, hbool_t flush)
if(flush) {
/* Flush */
- if(H5F_istore_flush_entry(f, dxpl_id, ent, TRUE) < 0)
+ if(H5F_istore_flush_entry(f, dxpl_cache, dxpl_id, ent, TRUE) < 0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "cannot flush indexed storage buffer");
}
else {
@@ -1116,6 +1104,7 @@ done:
herr_t
H5F_istore_flush (H5F_t *f, hid_t dxpl_id, unsigned flags)
{
+ H5D_dxpl_cache_t dxpl_cache; /* Cached data transfer properties */
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
int nerrors=0;
H5F_rdcc_ent_t *ent=NULL, *next=NULL;
@@ -1123,6 +1112,10 @@ H5F_istore_flush (H5F_t *f, hid_t dxpl_id, unsigned flags)
FUNC_ENTER_NOAPI(H5F_istore_flush, FAIL);
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
for (ent=rdcc->head; ent; ent=next) {
next = ent->next;
if ((flags&H5F_FLUSH_CLEAR_ONLY)) {
@@ -1130,10 +1123,10 @@ H5F_istore_flush (H5F_t *f, hid_t dxpl_id, unsigned flags)
ent->dirty = FALSE;
} /* end if */
else if ((flags&H5F_FLUSH_INVALIDATE)) {
- if (H5F_istore_preempt(f, dxpl_id, ent, TRUE )<0)
+ if (H5F_istore_preempt(f, &dxpl_cache, dxpl_id, ent, TRUE )<0)
nerrors++;
} else {
- if (H5F_istore_flush_entry(f, dxpl_id, ent, FALSE)<0)
+ if (H5F_istore_flush_entry(f, &dxpl_cache, dxpl_id, ent, FALSE)<0)
nerrors++;
}
}
@@ -1166,6 +1159,7 @@ done:
herr_t
H5F_istore_dest (H5F_t *f, hid_t dxpl_id)
{
+ H5D_dxpl_cache_t dxpl_cache; /* Cached data transfer properties */
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
int nerrors=0;
H5F_rdcc_ent_t *ent=NULL, *next=NULL;
@@ -1173,13 +1167,17 @@ H5F_istore_dest (H5F_t *f, hid_t dxpl_id)
FUNC_ENTER_NOAPI(H5F_istore_dest, FAIL);
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
for (ent=rdcc->head; ent; ent=next) {
#ifdef H5F_ISTORE_DEBUG
HDfputc('c', stderr);
HDfflush(stderr);
#endif
next = ent->next;
- if (H5F_istore_preempt(f, dxpl_id, ent, TRUE )<0)
+ if (H5F_istore_preempt(f, &dxpl_cache, dxpl_id, ent, TRUE )<0)
nerrors++;
}
if (nerrors)
@@ -1212,7 +1210,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_prune (H5F_t *f, hid_t dxpl_id, size_t size)
+H5F_istore_prune (H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, size_t size)
{
int i, j, nerrors=0;
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
@@ -1291,7 +1289,7 @@ H5F_istore_prune (H5F_t *f, hid_t dxpl_id, size_t size)
if (n[j]==cur)
n[j] = cur->next;
}
- if (H5F_istore_preempt(f, dxpl_id, cur, TRUE)<0)
+ if (H5F_istore_preempt(f, dxpl_cache, dxpl_id, cur, TRUE)<0)
nerrors++;
}
}
@@ -1346,7 +1344,7 @@ done:
*-------------------------------------------------------------------------
*/
static void *
-H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
+H5F_istore_lock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, const H5O_layout_t *layout,
const H5O_pline_t *pline, const H5O_fill_t *fill, H5D_fill_time_t fill_time,
const hssize_t offset[], hbool_t relax,
unsigned *idx_hint/*in,out*/)
@@ -1363,15 +1361,10 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
herr_t status; /*func return status */
void *chunk=NULL; /*the file chunk */
void *ret_value; /*return value */
- H5P_genplist_t *plist; /* Property list */
- H5Z_EDC_t edc;
- H5Z_cb_t cb_struct;
FUNC_ENTER_NOAPI_NOINIT(H5F_istore_lock);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- plist=H5I_object(dxpl_id);
- assert(plist!=NULL);
HDmemset(&udata, 0, sizeof(H5F_istore_ud1_t));
if (rdcc->nslots>0) {
@@ -1447,12 +1440,8 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for raw data chunk");
if (H5F_block_read(f, H5FD_MEM_DRAW, udata.addr, udata.key.nbytes, dxpl_id, chunk)<0)
HGOTO_ERROR (H5E_IO, H5E_READERROR, NULL, "unable to read raw data chunk");
- if(H5P_get(plist,H5D_XFER_EDC_NAME,&edc)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "can't get edc information");
- if(H5P_get(plist,H5D_XFER_FILTER_CB_NAME,&cb_struct)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "can't get filter callback struct");
- if (H5Z_pipeline(pline, H5Z_FLAG_REVERSE, &(udata.key.filter_mask), edc,
- cb_struct, &(udata.key.nbytes), &chunk_alloc, &chunk)<0) {
+ if (H5Z_pipeline(pline, H5Z_FLAG_REVERSE, &(udata.key.filter_mask), dxpl_cache->err_detect,
+ dxpl_cache->filter_cb, &(udata.key.nbytes), &chunk_alloc, &chunk)<0) {
HGOTO_ERROR(H5E_PLINE, H5E_READERROR, NULL, "data pipeline read failed");
}
rdcc->nmisses++;
@@ -1500,10 +1489,10 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
HDputc('#', stderr);
HDfflush(stderr);
#endif
- if (H5F_istore_preempt(f, dxpl_id, ent, TRUE)<0)
+ if (H5F_istore_preempt(f, dxpl_cache, dxpl_id, ent, TRUE)<0)
HGOTO_ERROR(H5E_IO, H5E_CANTINIT, NULL, "unable to preempt chunk from cache");
}
- if (H5F_istore_prune(f, dxpl_id, chunk_size)<0)
+ if (H5F_istore_prune(f, dxpl_cache, dxpl_id, chunk_size)<0)
HGOTO_ERROR(H5E_IO, H5E_CANTINIT, NULL, "unable to preempt chunk(s) from cache");
/* Create a new entry */
@@ -1520,7 +1509,7 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
ent->wr_count = chunk_size;
ent->chunk = chunk;
- H5P_get(plist,H5D_XFER_BTREE_SPLIT_RATIO_NAME,&(ent->split_ratios));
+ HDmemcpy(&(ent->split_ratios),&dxpl_cache->btree_split_ratio,H5D_XFER_BTREE_SPLIT_RATIO_SIZE);
/* Add it to the cache */
assert(NULL==rdcc->slot[idx]);
@@ -1619,16 +1608,14 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_unlock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- const H5O_pline_t *pline, hbool_t dirty,
- const hssize_t offset[], unsigned *idx_hint,
- uint8_t *chunk, size_t naccessed)
+H5F_istore_unlock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const H5O_layout_t *layout, const H5O_pline_t *pline, hbool_t dirty,
+ const hssize_t offset[], unsigned *idx_hint, uint8_t *chunk, size_t naccessed)
{
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
H5F_rdcc_ent_t *ent = NULL;
int found = -1;
unsigned u;
- H5P_genplist_t *plist; /* Property list */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_istore_unlock);
@@ -1664,12 +1651,9 @@ H5F_istore_unlock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
x.alloc_size = x.chunk_size;
x.chunk = chunk;
- assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- plist=H5I_object(dxpl_id);
- assert(plist!=NULL);
- H5P_get(plist,H5D_XFER_BTREE_SPLIT_RATIO_NAME,&(x.split_ratios));
+ HDmemcpy(&(x.split_ratios),&dxpl_cache->btree_split_ratio,H5D_XFER_BTREE_SPLIT_RATIO_SIZE);
- H5F_istore_flush_entry (f, dxpl_id, &x, TRUE);
+ H5F_istore_flush_entry (f, dxpl_cache, dxpl_id, &x, TRUE);
} else {
if(chunk)
H5MM_xfree (chunk);
@@ -1709,8 +1693,8 @@ H5F_istore_unlock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_istore_readvv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, hssize_t chunk_coords[],
+H5F_istore_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const H5O_layout_t *layout, const struct H5D_dcpl_cache_t *dcpl_cache, hssize_t chunk_coords[],
size_t chunk_max_nseq, size_t *chunk_curr_seq, size_t chunk_len_arr[], hsize_t chunk_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *buf)
@@ -1718,7 +1702,6 @@ H5F_istore_readvv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
hsize_t chunk_size; /* Chunk size, in bytes */
haddr_t chunk_addr; /* Chunk address on disk */
hssize_t chunk_coords_in_elmts[H5O_LAYOUT_NDIMS];
- H5O_pline_t pline; /* I/O pipeline information */
size_t u; /* Local index variables */
ssize_t ret_value; /* Return value */
@@ -1726,18 +1709,16 @@ H5F_istore_readvv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
/* Check args */
assert(f);
+ assert(dxpl_cache);
assert(layout && H5D_CHUNKED==layout->type);
assert(layout->ndims>0 && layout->ndims<=H5O_LAYOUT_NDIMS);
+ assert(dcpl_cache);
assert(chunk_len_arr);
assert(chunk_offset_arr);
assert(mem_len_arr);
assert(mem_offset_arr);
assert(buf);
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_DATA_PIPELINE_NAME, &pline) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get data pipeline");
-
/* Compute chunk size */
for (u=0, chunk_size=1; u<layout->ndims; u++)
chunk_size *= layout->dim[u];
@@ -1771,29 +1752,21 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
* for the chunk has been defined, then don't load the chunk into the
* cache, just write the data to it directly.
*/
- if (chunk_size>f->shared->rdcc_nbytes && pline.nused==0 &&
+ if (chunk_size>f->shared->rdcc_nbytes && dcpl_cache->pline.nused==0 &&
chunk_addr!=HADDR_UNDEF) {
if ((ret_value=H5F_contig_readvv(f, chunk_size, chunk_addr, chunk_max_nseq, chunk_curr_seq, chunk_len_arr, chunk_offset_arr, mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr, dxpl_id, buf))<0)
HGOTO_ERROR (H5E_IO, H5E_READERROR, FAIL, "unable to read raw data to file");
} /* end if */
else {
uint8_t *chunk; /* Pointer to cached chunk in memory */
- H5O_fill_t fill; /* Fill value information */
- H5D_fill_time_t fill_time; /* Fill time information */
unsigned idx_hint=0; /* Cache index hint */
ssize_t naccessed; /* Number of bytes accessed in chunk */
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill value");
- if(H5P_get(dc_plist, H5D_CRT_FILL_TIME_NAME, &fill_time) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill time");
-
/*
* Lock the chunk, copy from application to chunk, then unlock the
* chunk.
*/
- if (NULL==(chunk=H5F_istore_lock(f, dxpl_id, layout, &pline, &fill, fill_time,
+ if (NULL==(chunk=H5F_istore_lock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, &dcpl_cache->fill, dcpl_cache->fill_time,
chunk_coords_in_elmts, FALSE, &idx_hint)))
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "unable to read raw data chunk");
@@ -1802,7 +1775,7 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "vectorized memcpy failed");
H5_CHECK_OVERFLOW(naccessed,ssize_t,size_t);
- if (H5F_istore_unlock(f, dxpl_id, layout, &pline, FALSE,
+ if (H5F_istore_unlock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, FALSE,
chunk_coords_in_elmts, &idx_hint, chunk, (size_t)naccessed)<0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "unable to unlock raw data chunk");
@@ -1831,8 +1804,9 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_istore_writevv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, hssize_t chunk_coords[],
+H5F_istore_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, hssize_t chunk_coords[],
size_t chunk_max_nseq, size_t *chunk_curr_seq, size_t chunk_len_arr[], hsize_t chunk_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *buf)
@@ -1840,7 +1814,6 @@ H5F_istore_writevv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
hsize_t chunk_size; /* Chunk size, in bytes */
haddr_t chunk_addr; /* Chunk address on disk */
hssize_t chunk_coords_in_elmts[H5O_LAYOUT_NDIMS];
- H5O_pline_t pline; /* I/O pipeline information */
size_t u; /* Local index variables */
ssize_t ret_value; /* Return value */
@@ -1848,18 +1821,16 @@ H5F_istore_writevv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
/* Check args */
assert(f);
+ assert(dxpl_cache);
assert(layout && H5D_CHUNKED==layout->type);
assert(layout->ndims>0 && layout->ndims<=H5O_LAYOUT_NDIMS);
+ assert(dcpl_cache);
assert(chunk_len_arr);
assert(chunk_offset_arr);
assert(mem_len_arr);
assert(mem_offset_arr);
assert(buf);
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_DATA_PIPELINE_NAME, &pline) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get data pipeline");
-
/* Compute chunk size */
for (u=0, chunk_size=1; u<layout->ndims; u++)
chunk_size *= layout->dim[u];
@@ -1898,11 +1869,11 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
* writing to other elements in the same chunk. Do a direct
* write-through of only the elements requested.
*/
- if ((chunk_size>f->shared->rdcc_nbytes && pline.nused==0 && chunk_addr!=HADDR_UNDEF)
+ if ((chunk_size>f->shared->rdcc_nbytes && dcpl_cache->pline.nused==0 && chunk_addr!=HADDR_UNDEF)
|| (IS_H5FD_MPI(f) && (H5F_ACC_RDWR & f->shared->flags))) {
#ifdef H5_HAVE_PARALLEL
/* Additional sanity check when operating in parallel */
- if (chunk_addr==HADDR_UNDEF || pline.nused>0)
+ if (chunk_addr==HADDR_UNDEF || dcpl_cache->pline.nused>0)
HGOTO_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "unable to locate raw data chunk");
#endif /* H5_HAVE_PARALLEL */
if ((ret_value=H5F_contig_writevv(f, chunk_size, chunk_addr, chunk_max_nseq, chunk_curr_seq, chunk_len_arr, chunk_offset_arr, mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr, dxpl_id, buf))<0)
@@ -1910,18 +1881,10 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
} /* end if */
else {
uint8_t *chunk; /* Pointer to cached chunk in memory */
- H5O_fill_t fill; /* Fill value information */
- H5D_fill_time_t fill_time; /* Fill time information */
unsigned idx_hint=0; /* Cache index hint */
ssize_t naccessed; /* Number of bytes accessed in chunk */
hbool_t relax; /* Whether whole chunk is selected */
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill value");
- if(H5P_get(dc_plist, H5D_CRT_FILL_TIME_NAME, &fill_time) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill time");
-
/*
* Lock the chunk, copy from application to chunk, then unlock the
* chunk.
@@ -1931,7 +1894,7 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
else
relax = FALSE;
- if (NULL==(chunk=H5F_istore_lock(f, dxpl_id, layout, &pline, &fill, fill_time,
+ if (NULL==(chunk=H5F_istore_lock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, &dcpl_cache->fill, dcpl_cache->fill_time,
chunk_coords_in_elmts, relax, &idx_hint)))
HGOTO_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "unable to read raw data chunk");
@@ -1940,7 +1903,7 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "vectorized memcpy failed");
H5_CHECK_OVERFLOW(naccessed,ssize_t,size_t);
- if (H5F_istore_unlock(f, dxpl_id, layout, &pline, TRUE,
+ if (H5F_istore_unlock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, TRUE,
chunk_coords_in_elmts, &idx_hint, chunk, (size_t)naccessed)<0)
HGOTO_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "uanble to unlock raw data chunk");
@@ -2174,7 +2137,7 @@ H5F_istore_allocate(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
assert(layout->ndims>0 && layout->ndims<=H5O_LAYOUT_NDIMS);
assert(H5F_addr_defined(layout->addr));
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- assert(dc_plist!=NULL);
+ assert(dc_plist);
/* Get necessary properties from dataset creation property list */
if(H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
@@ -2467,7 +2430,8 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5F_istore_prune_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout, const H5S_t * space)
+H5F_istore_prune_by_extent(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout, const H5S_t * space)
{
H5F_rdcc_t *rdcc = &(f->shared->rdcc); /*raw data chunk cache */
H5F_rdcc_ent_t *ent = NULL, *next = NULL; /*cache entry */
@@ -2520,7 +2484,7 @@ H5F_istore_prune_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
#endif
/* Preempt the entry from the cache, but do not flush it to disk */
- if(H5F_istore_preempt(f, dxpl_id, ent, FALSE) < 0)
+ if(H5F_istore_preempt(f, dxpl_cache, dxpl_id, ent, FALSE) < 0)
HGOTO_ERROR(H5E_IO, H5E_CANTINIT, 0, "unable to preempt chunk");
}
}
@@ -2677,8 +2641,9 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5F_istore_initialize_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5S_t * space)
+H5F_istore_initialize_by_extent(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout,
+ H5P_genplist_t *dc_plist, const H5S_t * space)
{
uint8_t *chunk = NULL; /*the file chunk */
unsigned idx_hint = 0; /*input value for H5F_istore_lock */
@@ -2775,7 +2740,7 @@ H5F_istore_initialize_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *lay
if(found) {
- if(NULL == (chunk = H5F_istore_lock(f, dxpl_id, layout, &pline, &fill, fill_time,
+ if(NULL == (chunk = H5F_istore_lock(f, dxpl_cache, dxpl_id, layout, &pline, &fill, fill_time,
chunk_offset, FALSE, &idx_hint)))
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to read raw data chunk");
@@ -2808,7 +2773,7 @@ H5F_istore_initialize_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *lay
if(H5S_select_fill(fill.buf, (size_t)size[rank], space_chunk, chunk) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "filling selection failed");
- if(H5F_istore_unlock(f, dxpl_id, layout, &pline, TRUE,
+ if(H5F_istore_unlock(f, dxpl_cache, dxpl_id, layout, &pline, TRUE,
chunk_offset, &idx_hint, chunk, (size_t)naccessed) < 0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to unlock raw data chunk");
} /*found */
@@ -2848,6 +2813,7 @@ done:
herr_t
H5F_istore_delete(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout)
{
+ H5D_dxpl_cache_t dxpl_cache; /* Cached data transfer properties */
H5F_istore_ud1_t udata; /* User data for B-tree iterator call */
H5F_rdcc_t *rdcc = &(f->shared->rdcc); /* File's raw data chunk cache */
H5F_rdcc_ent_t *ent, *next; /* Pointers to cache entries */
@@ -2855,6 +2821,10 @@ H5F_istore_delete(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout)
FUNC_ENTER_NOAPI(H5F_istore_delete, FAIL);
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
/* Check if the B-tree has been created in the file */
if(H5F_addr_defined(layout->addr)) {
/* Iterate through the entries in the cache, checking for the chunks to be deleted */
@@ -2865,7 +2835,7 @@ H5F_istore_delete(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout)
/* Is the chunk to be deleted this cache entry? */
if(layout->addr==ent->layout->addr)
/* Remove entry without flushing */
- if (H5F_istore_preempt(f, dxpl_id, ent, FALSE )<0)
+ if (H5F_istore_preempt(f, &dxpl_cache, dxpl_id, ent, FALSE )<0)
HGOTO_ERROR (H5E_IO, H5E_CANTFLUSH, FAIL, "unable to flush one or more raw data chunks");
} /* end for */
diff --git a/src/H5Dprivate.h b/src/H5Dprivate.h
index 81075fc..d0755e4 100644
--- a/src/H5Dprivate.h
+++ b/src/H5Dprivate.h
@@ -22,6 +22,7 @@
#include "H5Dpublic.h"
/* Private headers needed by this file */
+#include "H5FDprivate.h" /* File drivers */
#include "H5Oprivate.h" /* Object headers */
/*
@@ -126,7 +127,7 @@
#define H5D_XFER_IO_XFER_MODE_SIZE sizeof(H5FD_mpio_xfer_t)
#define H5D_XFER_IO_XFER_MODE_DEF H5FD_MPIO_INDEPENDENT
/* Definitions for EDC property */
-#define H5D_XFER_EDC_NAME "error-detecting"
+#define H5D_XFER_EDC_NAME "err_detect"
#define H5D_XFER_EDC_SIZE sizeof(H5Z_EDC_t)
#define H5D_XFER_EDC_DEF H5Z_ENABLE_EDC
/* Definitions for filter callback function property */
@@ -147,6 +148,28 @@ typedef union H5D_storage_t {
hssize_t *chunk_coords; /* chunk's coordinates in file chunks */
} H5D_storage_t;
+/* Typedef for cached dataset transfer property list information */
+typedef struct H5D_dxpl_cache_t {
+ size_t max_temp_buf; /* Maximum temporary buffer size (H5D_XFER_MAX_TEMP_BUF_NAME) */
+ void *tconv_buf; /* Temporary conversion buffer (H5D_XFER_TCONV_BUF_NAME) */
+ void *bkgr_buf; /* Background conversion buffer (H5D_XFER_BKGR_BUF_NAME) */
+ H5T_bkg_t bkgr_buf_type; /* Background buffer type (H5D_XFER_BKGR_BUF_NAME) */
+ double btree_split_ratio[3];/* B-tree split ratios (H5D_XFER_BTREE_SPLIT_RATIO_NAME) */
+ size_t vec_size; /* Size of hyperslab vector (H5D_XFER_HYPER_VECTOR_SIZE_NAME) */
+#ifdef H5_HAVE_PARALLEL
+ H5FD_mpio_xfer_t xfer_mode; /* Parallel transfer for this request (H5D_XFER_IO_XFER_MODE_NAME) */
+#endif /*H5_HAVE_PARALLEL*/
+ H5Z_EDC_t err_detect; /* Error detection info (H5D_XFER_EDC_NAME) */
+ H5Z_cb_t filter_cb; /* Filter callback function (H5D_XFER_FILTER_CB_NAME) */
+} H5D_dxpl_cache_t;
+
+/* Typedef for cached dataset creation property list information */
+typedef struct H5D_dcpl_cache_t {
+ H5O_pline_t pline; /* I/O pipeline info (H5D_CRT_DATA_PIPELINE_NAME) */
+ H5O_fill_t fill; /* Fill value info (H5D_CRT_FILL_VALUE_NAME) */
+ H5D_fill_time_t fill_time; /* Fill time (H5D_CRT_FILL_TIME_NAME) */
+} H5D_dcpl_cache_t;
+
/* Library-private functions defined in H5D package */
H5_DLL herr_t H5D_init(void);
H5_DLL hid_t H5D_open(H5G_entry_t *ent, hid_t dxpl_id);
@@ -161,5 +184,6 @@ H5_DLL herr_t H5D_xfer_copy(hid_t new_plist_id, hid_t old_plist_id,
void *copy_data);
H5_DLL herr_t H5D_xfer_close(hid_t dxpl_id, void *close_data);
H5_DLL herr_t H5D_flush(const H5F_t *f, hid_t dxpl_id);
+H5_DLL herr_t H5D_get_dxpl_cache(hid_t dxpl_id, H5D_dxpl_cache_t *cache);
#endif
diff --git a/src/H5Dseq.c b/src/H5Dseq.c
index 03c10fe..3e8ce3b 100644
--- a/src/H5Dseq.c
+++ b/src/H5Dseq.c
@@ -68,8 +68,9 @@ static int interface_initialize_g = 0;
*-------------------------------------------------------------------------
*/
herr_t
-H5F_seq_read(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_read(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t seq_len, hsize_t dset_offset, void *buf/*out*/)
{
hsize_t mem_off=0; /* Offset in memory */
@@ -86,7 +87,7 @@ H5F_seq_read(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
assert(buf);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- if (H5F_seq_readvv(f, dxpl_id, layout, dc_plist, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
+ if (H5F_seq_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "vector read failed");
done:
@@ -116,8 +117,9 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5F_seq_write(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_write(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t seq_len, hsize_t dset_offset, const void *buf)
{
hsize_t mem_off=0; /* Offset in memory */
@@ -134,7 +136,7 @@ H5F_seq_write(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout,
assert(buf);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- if (H5F_seq_writevv(f, dxpl_id, layout, dc_plist, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
+ if (H5F_seq_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "vector write failed");
done:
@@ -183,8 +185,9 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_seq_readvv(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *buf/*out*/)
@@ -197,7 +200,7 @@ H5F_seq_readvv(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout,
assert(f);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); /* Make certain we have the correct type of property list */
assert(layout);
- assert(dc_plist);
+ assert(dcpl_cache);
assert(dset_curr_seq);
assert(*dset_curr_seq<dset_max_nseq);
assert(dset_len_arr);
@@ -241,7 +244,7 @@ H5F_seq_readvv(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout,
case H5D_CHUNKED:
assert(store);
- if((ret_value=H5F_istore_readvv(f, dxpl_id, layout, dc_plist, store->chunk_coords,
+ if((ret_value=H5F_istore_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store->chunk_coords,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
buf))<0)
@@ -298,8 +301,9 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_seq_writevv(H5F_t *f, hid_t dxpl_id, struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *buf)
@@ -312,7 +316,7 @@ H5F_seq_writevv(H5F_t *f, hid_t dxpl_id, struct H5O_layout_t *layout,
assert(f);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); /* Make certain we have the correct type of property list */
assert(layout);
- assert(dc_plist);
+ assert(dcpl_cache);
assert(dset_curr_seq);
assert(*dset_curr_seq<dset_max_nseq);
assert(dset_len_arr);
@@ -356,7 +360,7 @@ H5F_seq_writevv(H5F_t *f, hid_t dxpl_id, struct H5O_layout_t *layout,
case H5D_CHUNKED:
assert(store);
- if((ret_value=H5F_istore_writevv(f, dxpl_id, layout, dc_plist, store->chunk_coords,
+ if((ret_value=H5F_istore_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store->chunk_coords,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
buf))<0)
diff --git a/src/H5FDprivate.h b/src/H5FDprivate.h
index 064d337..52747d0 100644
--- a/src/H5FDprivate.h
+++ b/src/H5FDprivate.h
@@ -32,6 +32,9 @@
/* Macros */
+/* Forward declarations for prototype arguments */
+struct H5P_genplist_t;
+
/* Prototypes */
H5_DLL int H5FD_term_interface(void);
H5_DLL H5FD_class_t *H5FD_get_class(hid_t id);
diff --git a/src/H5Fistore.c b/src/H5Fistore.c
index b726c68..f8ae032 100644
--- a/src/H5Fistore.c
+++ b/src/H5Fistore.c
@@ -910,7 +910,8 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_flush_entry(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t reset)
+H5F_istore_flush_entry(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t reset)
{
herr_t ret_value=SUCCEED; /*return value */
H5F_istore_ud1_t udata; /*pass through B-tree */
@@ -939,10 +940,6 @@ H5F_istore_flush_entry(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t res
/* Should the chunk be filtered before writing it to disk? */
if (ent->pline && ent->pline->nused) {
- H5P_genplist_t *plist; /* Data xfer property list */
- H5Z_cb_t cb_struct;
- H5Z_EDC_t edc;
-
if (!reset) {
/*
* Copy the chunk to a new buffer before running it through
@@ -966,17 +963,8 @@ H5F_istore_flush_entry(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t *ent, hbool_t res
point_of_no_return = TRUE;
ent->chunk = NULL;
}
- /* Don't know whether we should involve transfer property list. So
- * just pass in H5Z_ENABLE_EDC and default callback setting for data
- * read. */
- if (NULL == (plist = H5P_object_verify(dxpl_id,H5P_DATASET_XFER)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list");
- if(H5P_get(plist,H5D_XFER_EDC_NAME,&edc)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get edc information");
- if(H5P_get(plist,H5D_XFER_FILTER_CB_NAME,&cb_struct)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get filter callback struct");
- if (H5Z_pipeline(ent->pline, 0, &(udata.key.filter_mask), edc,
- cb_struct, &(udata.key.nbytes), &alloc, &buf)<0) {
+ if (H5Z_pipeline(ent->pline, 0, &(udata.key.filter_mask), dxpl_cache->err_detect,
+ dxpl_cache->filter_cb, &(udata.key.nbytes), &alloc, &buf)<0) {
HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL,
"output pipeline failed");
}
@@ -1046,7 +1034,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_preempt(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t * ent, hbool_t flush)
+H5F_istore_preempt(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, H5F_rdcc_ent_t * ent, hbool_t flush)
{
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
herr_t ret_value=SUCCEED; /* Return value */
@@ -1060,7 +1048,7 @@ H5F_istore_preempt(H5F_t *f, hid_t dxpl_id, H5F_rdcc_ent_t * ent, hbool_t flush)
if(flush) {
/* Flush */
- if(H5F_istore_flush_entry(f, dxpl_id, ent, TRUE) < 0)
+ if(H5F_istore_flush_entry(f, dxpl_cache, dxpl_id, ent, TRUE) < 0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "cannot flush indexed storage buffer");
}
else {
@@ -1116,6 +1104,7 @@ done:
herr_t
H5F_istore_flush (H5F_t *f, hid_t dxpl_id, unsigned flags)
{
+ H5D_dxpl_cache_t dxpl_cache; /* Cached data transfer properties */
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
int nerrors=0;
H5F_rdcc_ent_t *ent=NULL, *next=NULL;
@@ -1123,6 +1112,10 @@ H5F_istore_flush (H5F_t *f, hid_t dxpl_id, unsigned flags)
FUNC_ENTER_NOAPI(H5F_istore_flush, FAIL);
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
for (ent=rdcc->head; ent; ent=next) {
next = ent->next;
if ((flags&H5F_FLUSH_CLEAR_ONLY)) {
@@ -1130,10 +1123,10 @@ H5F_istore_flush (H5F_t *f, hid_t dxpl_id, unsigned flags)
ent->dirty = FALSE;
} /* end if */
else if ((flags&H5F_FLUSH_INVALIDATE)) {
- if (H5F_istore_preempt(f, dxpl_id, ent, TRUE )<0)
+ if (H5F_istore_preempt(f, &dxpl_cache, dxpl_id, ent, TRUE )<0)
nerrors++;
} else {
- if (H5F_istore_flush_entry(f, dxpl_id, ent, FALSE)<0)
+ if (H5F_istore_flush_entry(f, &dxpl_cache, dxpl_id, ent, FALSE)<0)
nerrors++;
}
}
@@ -1166,6 +1159,7 @@ done:
herr_t
H5F_istore_dest (H5F_t *f, hid_t dxpl_id)
{
+ H5D_dxpl_cache_t dxpl_cache; /* Cached data transfer properties */
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
int nerrors=0;
H5F_rdcc_ent_t *ent=NULL, *next=NULL;
@@ -1173,13 +1167,17 @@ H5F_istore_dest (H5F_t *f, hid_t dxpl_id)
FUNC_ENTER_NOAPI(H5F_istore_dest, FAIL);
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
for (ent=rdcc->head; ent; ent=next) {
#ifdef H5F_ISTORE_DEBUG
HDfputc('c', stderr);
HDfflush(stderr);
#endif
next = ent->next;
- if (H5F_istore_preempt(f, dxpl_id, ent, TRUE )<0)
+ if (H5F_istore_preempt(f, &dxpl_cache, dxpl_id, ent, TRUE )<0)
nerrors++;
}
if (nerrors)
@@ -1212,7 +1210,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_prune (H5F_t *f, hid_t dxpl_id, size_t size)
+H5F_istore_prune (H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, size_t size)
{
int i, j, nerrors=0;
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
@@ -1291,7 +1289,7 @@ H5F_istore_prune (H5F_t *f, hid_t dxpl_id, size_t size)
if (n[j]==cur)
n[j] = cur->next;
}
- if (H5F_istore_preempt(f, dxpl_id, cur, TRUE)<0)
+ if (H5F_istore_preempt(f, dxpl_cache, dxpl_id, cur, TRUE)<0)
nerrors++;
}
}
@@ -1346,7 +1344,7 @@ done:
*-------------------------------------------------------------------------
*/
static void *
-H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
+H5F_istore_lock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, const H5O_layout_t *layout,
const H5O_pline_t *pline, const H5O_fill_t *fill, H5D_fill_time_t fill_time,
const hssize_t offset[], hbool_t relax,
unsigned *idx_hint/*in,out*/)
@@ -1363,15 +1361,10 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
herr_t status; /*func return status */
void *chunk=NULL; /*the file chunk */
void *ret_value; /*return value */
- H5P_genplist_t *plist; /* Property list */
- H5Z_EDC_t edc;
- H5Z_cb_t cb_struct;
FUNC_ENTER_NOAPI_NOINIT(H5F_istore_lock);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- plist=H5I_object(dxpl_id);
- assert(plist!=NULL);
HDmemset(&udata, 0, sizeof(H5F_istore_ud1_t));
if (rdcc->nslots>0) {
@@ -1447,12 +1440,8 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for raw data chunk");
if (H5F_block_read(f, H5FD_MEM_DRAW, udata.addr, udata.key.nbytes, dxpl_id, chunk)<0)
HGOTO_ERROR (H5E_IO, H5E_READERROR, NULL, "unable to read raw data chunk");
- if(H5P_get(plist,H5D_XFER_EDC_NAME,&edc)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "can't get edc information");
- if(H5P_get(plist,H5D_XFER_FILTER_CB_NAME,&cb_struct)<0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "can't get filter callback struct");
- if (H5Z_pipeline(pline, H5Z_FLAG_REVERSE, &(udata.key.filter_mask), edc,
- cb_struct, &(udata.key.nbytes), &chunk_alloc, &chunk)<0) {
+ if (H5Z_pipeline(pline, H5Z_FLAG_REVERSE, &(udata.key.filter_mask), dxpl_cache->err_detect,
+ dxpl_cache->filter_cb, &(udata.key.nbytes), &chunk_alloc, &chunk)<0) {
HGOTO_ERROR(H5E_PLINE, H5E_READERROR, NULL, "data pipeline read failed");
}
rdcc->nmisses++;
@@ -1500,10 +1489,10 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
HDputc('#', stderr);
HDfflush(stderr);
#endif
- if (H5F_istore_preempt(f, dxpl_id, ent, TRUE)<0)
+ if (H5F_istore_preempt(f, dxpl_cache, dxpl_id, ent, TRUE)<0)
HGOTO_ERROR(H5E_IO, H5E_CANTINIT, NULL, "unable to preempt chunk from cache");
}
- if (H5F_istore_prune(f, dxpl_id, chunk_size)<0)
+ if (H5F_istore_prune(f, dxpl_cache, dxpl_id, chunk_size)<0)
HGOTO_ERROR(H5E_IO, H5E_CANTINIT, NULL, "unable to preempt chunk(s) from cache");
/* Create a new entry */
@@ -1520,7 +1509,7 @@ H5F_istore_lock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
ent->wr_count = chunk_size;
ent->chunk = chunk;
- H5P_get(plist,H5D_XFER_BTREE_SPLIT_RATIO_NAME,&(ent->split_ratios));
+ HDmemcpy(&(ent->split_ratios),&dxpl_cache->btree_split_ratio,H5D_XFER_BTREE_SPLIT_RATIO_SIZE);
/* Add it to the cache */
assert(NULL==rdcc->slot[idx]);
@@ -1619,16 +1608,14 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5F_istore_unlock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- const H5O_pline_t *pline, hbool_t dirty,
- const hssize_t offset[], unsigned *idx_hint,
- uint8_t *chunk, size_t naccessed)
+H5F_istore_unlock(H5F_t *f, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const H5O_layout_t *layout, const H5O_pline_t *pline, hbool_t dirty,
+ const hssize_t offset[], unsigned *idx_hint, uint8_t *chunk, size_t naccessed)
{
H5F_rdcc_t *rdcc = &(f->shared->rdcc);
H5F_rdcc_ent_t *ent = NULL;
int found = -1;
unsigned u;
- H5P_genplist_t *plist; /* Property list */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_istore_unlock);
@@ -1664,12 +1651,9 @@ H5F_istore_unlock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
x.alloc_size = x.chunk_size;
x.chunk = chunk;
- assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- plist=H5I_object(dxpl_id);
- assert(plist!=NULL);
- H5P_get(plist,H5D_XFER_BTREE_SPLIT_RATIO_NAME,&(x.split_ratios));
+ HDmemcpy(&(x.split_ratios),&dxpl_cache->btree_split_ratio,H5D_XFER_BTREE_SPLIT_RATIO_SIZE);
- H5F_istore_flush_entry (f, dxpl_id, &x, TRUE);
+ H5F_istore_flush_entry (f, dxpl_cache, dxpl_id, &x, TRUE);
} else {
if(chunk)
H5MM_xfree (chunk);
@@ -1709,8 +1693,8 @@ H5F_istore_unlock(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_istore_readvv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, hssize_t chunk_coords[],
+H5F_istore_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const H5O_layout_t *layout, const struct H5D_dcpl_cache_t *dcpl_cache, hssize_t chunk_coords[],
size_t chunk_max_nseq, size_t *chunk_curr_seq, size_t chunk_len_arr[], hsize_t chunk_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *buf)
@@ -1718,7 +1702,6 @@ H5F_istore_readvv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
hsize_t chunk_size; /* Chunk size, in bytes */
haddr_t chunk_addr; /* Chunk address on disk */
hssize_t chunk_coords_in_elmts[H5O_LAYOUT_NDIMS];
- H5O_pline_t pline; /* I/O pipeline information */
size_t u; /* Local index variables */
ssize_t ret_value; /* Return value */
@@ -1726,18 +1709,16 @@ H5F_istore_readvv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
/* Check args */
assert(f);
+ assert(dxpl_cache);
assert(layout && H5D_CHUNKED==layout->type);
assert(layout->ndims>0 && layout->ndims<=H5O_LAYOUT_NDIMS);
+ assert(dcpl_cache);
assert(chunk_len_arr);
assert(chunk_offset_arr);
assert(mem_len_arr);
assert(mem_offset_arr);
assert(buf);
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_DATA_PIPELINE_NAME, &pline) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get data pipeline");
-
/* Compute chunk size */
for (u=0, chunk_size=1; u<layout->ndims; u++)
chunk_size *= layout->dim[u];
@@ -1771,29 +1752,21 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
* for the chunk has been defined, then don't load the chunk into the
* cache, just write the data to it directly.
*/
- if (chunk_size>f->shared->rdcc_nbytes && pline.nused==0 &&
+ if (chunk_size>f->shared->rdcc_nbytes && dcpl_cache->pline.nused==0 &&
chunk_addr!=HADDR_UNDEF) {
if ((ret_value=H5F_contig_readvv(f, chunk_size, chunk_addr, chunk_max_nseq, chunk_curr_seq, chunk_len_arr, chunk_offset_arr, mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr, dxpl_id, buf))<0)
HGOTO_ERROR (H5E_IO, H5E_READERROR, FAIL, "unable to read raw data to file");
} /* end if */
else {
uint8_t *chunk; /* Pointer to cached chunk in memory */
- H5O_fill_t fill; /* Fill value information */
- H5D_fill_time_t fill_time; /* Fill time information */
unsigned idx_hint=0; /* Cache index hint */
ssize_t naccessed; /* Number of bytes accessed in chunk */
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill value");
- if(H5P_get(dc_plist, H5D_CRT_FILL_TIME_NAME, &fill_time) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill time");
-
/*
* Lock the chunk, copy from application to chunk, then unlock the
* chunk.
*/
- if (NULL==(chunk=H5F_istore_lock(f, dxpl_id, layout, &pline, &fill, fill_time,
+ if (NULL==(chunk=H5F_istore_lock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, &dcpl_cache->fill, dcpl_cache->fill_time,
chunk_coords_in_elmts, FALSE, &idx_hint)))
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "unable to read raw data chunk");
@@ -1802,7 +1775,7 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "vectorized memcpy failed");
H5_CHECK_OVERFLOW(naccessed,ssize_t,size_t);
- if (H5F_istore_unlock(f, dxpl_id, layout, &pline, FALSE,
+ if (H5F_istore_unlock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, FALSE,
chunk_coords_in_elmts, &idx_hint, chunk, (size_t)naccessed)<0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "unable to unlock raw data chunk");
@@ -1831,8 +1804,9 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_istore_writevv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, hssize_t chunk_coords[],
+H5F_istore_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, hssize_t chunk_coords[],
size_t chunk_max_nseq, size_t *chunk_curr_seq, size_t chunk_len_arr[], hsize_t chunk_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *buf)
@@ -1840,7 +1814,6 @@ H5F_istore_writevv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
hsize_t chunk_size; /* Chunk size, in bytes */
haddr_t chunk_addr; /* Chunk address on disk */
hssize_t chunk_coords_in_elmts[H5O_LAYOUT_NDIMS];
- H5O_pline_t pline; /* I/O pipeline information */
size_t u; /* Local index variables */
ssize_t ret_value; /* Return value */
@@ -1848,18 +1821,16 @@ H5F_istore_writevv(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
/* Check args */
assert(f);
+ assert(dxpl_cache);
assert(layout && H5D_CHUNKED==layout->type);
assert(layout->ndims>0 && layout->ndims<=H5O_LAYOUT_NDIMS);
+ assert(dcpl_cache);
assert(chunk_len_arr);
assert(chunk_offset_arr);
assert(mem_len_arr);
assert(mem_offset_arr);
assert(buf);
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_DATA_PIPELINE_NAME, &pline) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get data pipeline");
-
/* Compute chunk size */
for (u=0, chunk_size=1; u<layout->ndims; u++)
chunk_size *= layout->dim[u];
@@ -1898,11 +1869,11 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
* writing to other elements in the same chunk. Do a direct
* write-through of only the elements requested.
*/
- if ((chunk_size>f->shared->rdcc_nbytes && pline.nused==0 && chunk_addr!=HADDR_UNDEF)
+ if ((chunk_size>f->shared->rdcc_nbytes && dcpl_cache->pline.nused==0 && chunk_addr!=HADDR_UNDEF)
|| (IS_H5FD_MPI(f) && (H5F_ACC_RDWR & f->shared->flags))) {
#ifdef H5_HAVE_PARALLEL
/* Additional sanity check when operating in parallel */
- if (chunk_addr==HADDR_UNDEF || pline.nused>0)
+ if (chunk_addr==HADDR_UNDEF || dcpl_cache->pline.nused>0)
HGOTO_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "unable to locate raw data chunk");
#endif /* H5_HAVE_PARALLEL */
if ((ret_value=H5F_contig_writevv(f, chunk_size, chunk_addr, chunk_max_nseq, chunk_curr_seq, chunk_len_arr, chunk_offset_arr, mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr, dxpl_id, buf))<0)
@@ -1910,18 +1881,10 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
} /* end if */
else {
uint8_t *chunk; /* Pointer to cached chunk in memory */
- H5O_fill_t fill; /* Fill value information */
- H5D_fill_time_t fill_time; /* Fill time information */
unsigned idx_hint=0; /* Cache index hint */
ssize_t naccessed; /* Number of bytes accessed in chunk */
hbool_t relax; /* Whether whole chunk is selected */
- /* Get necessary properties from property list */
- if(H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill value");
- if(H5P_get(dc_plist, H5D_CRT_FILL_TIME_NAME, &fill_time) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fill time");
-
/*
* Lock the chunk, copy from application to chunk, then unlock the
* chunk.
@@ -1931,7 +1894,7 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
else
relax = FALSE;
- if (NULL==(chunk=H5F_istore_lock(f, dxpl_id, layout, &pline, &fill, fill_time,
+ if (NULL==(chunk=H5F_istore_lock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, &dcpl_cache->fill, dcpl_cache->fill_time,
chunk_coords_in_elmts, relax, &idx_hint)))
HGOTO_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "unable to read raw data chunk");
@@ -1940,7 +1903,7 @@ HDfprintf(stderr,"%s: mem_offset_arr[%Zu]=%Hu\n",FUNC,*mem_curr_seq,mem_offset_a
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "vectorized memcpy failed");
H5_CHECK_OVERFLOW(naccessed,ssize_t,size_t);
- if (H5F_istore_unlock(f, dxpl_id, layout, &pline, TRUE,
+ if (H5F_istore_unlock(f, dxpl_cache, dxpl_id, layout, &dcpl_cache->pline, TRUE,
chunk_coords_in_elmts, &idx_hint, chunk, (size_t)naccessed)<0)
HGOTO_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "uanble to unlock raw data chunk");
@@ -2174,7 +2137,7 @@ H5F_istore_allocate(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
assert(layout->ndims>0 && layout->ndims<=H5O_LAYOUT_NDIMS);
assert(H5F_addr_defined(layout->addr));
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- assert(dc_plist!=NULL);
+ assert(dc_plist);
/* Get necessary properties from dataset creation property list */
if(H5P_get(dc_plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
@@ -2467,7 +2430,8 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5F_istore_prune_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout, const H5S_t * space)
+H5F_istore_prune_by_extent(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout, const H5S_t * space)
{
H5F_rdcc_t *rdcc = &(f->shared->rdcc); /*raw data chunk cache */
H5F_rdcc_ent_t *ent = NULL, *next = NULL; /*cache entry */
@@ -2520,7 +2484,7 @@ H5F_istore_prune_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
#endif
/* Preempt the entry from the cache, but do not flush it to disk */
- if(H5F_istore_preempt(f, dxpl_id, ent, FALSE) < 0)
+ if(H5F_istore_preempt(f, dxpl_cache, dxpl_id, ent, FALSE) < 0)
HGOTO_ERROR(H5E_IO, H5E_CANTINIT, 0, "unable to preempt chunk");
}
}
@@ -2677,8 +2641,9 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5F_istore_initialize_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5S_t * space)
+H5F_istore_initialize_by_extent(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout,
+ H5P_genplist_t *dc_plist, const H5S_t * space)
{
uint8_t *chunk = NULL; /*the file chunk */
unsigned idx_hint = 0; /*input value for H5F_istore_lock */
@@ -2775,7 +2740,7 @@ H5F_istore_initialize_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *lay
if(found) {
- if(NULL == (chunk = H5F_istore_lock(f, dxpl_id, layout, &pline, &fill, fill_time,
+ if(NULL == (chunk = H5F_istore_lock(f, dxpl_cache, dxpl_id, layout, &pline, &fill, fill_time,
chunk_offset, FALSE, &idx_hint)))
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to read raw data chunk");
@@ -2808,7 +2773,7 @@ H5F_istore_initialize_by_extent(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *lay
if(H5S_select_fill(fill.buf, (size_t)size[rank], space_chunk, chunk) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "filling selection failed");
- if(H5F_istore_unlock(f, dxpl_id, layout, &pline, TRUE,
+ if(H5F_istore_unlock(f, dxpl_cache, dxpl_id, layout, &pline, TRUE,
chunk_offset, &idx_hint, chunk, (size_t)naccessed) < 0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to unlock raw data chunk");
} /*found */
@@ -2848,6 +2813,7 @@ done:
herr_t
H5F_istore_delete(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout)
{
+ H5D_dxpl_cache_t dxpl_cache; /* Cached data transfer properties */
H5F_istore_ud1_t udata; /* User data for B-tree iterator call */
H5F_rdcc_t *rdcc = &(f->shared->rdcc); /* File's raw data chunk cache */
H5F_rdcc_ent_t *ent, *next; /* Pointers to cache entries */
@@ -2855,6 +2821,10 @@ H5F_istore_delete(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout)
FUNC_ENTER_NOAPI(H5F_istore_delete, FAIL);
+ /* Fill the DXPL cache values for later use */
+ if (H5D_get_dxpl_cache(dxpl_id,&dxpl_cache)<0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache")
+
/* Check if the B-tree has been created in the file */
if(H5F_addr_defined(layout->addr)) {
/* Iterate through the entries in the cache, checking for the chunks to be deleted */
@@ -2865,7 +2835,7 @@ H5F_istore_delete(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout)
/* Is the chunk to be deleted this cache entry? */
if(layout->addr==ent->layout->addr)
/* Remove entry without flushing */
- if (H5F_istore_preempt(f, dxpl_id, ent, FALSE )<0)
+ if (H5F_istore_preempt(f, &dxpl_cache, dxpl_id, ent, FALSE )<0)
HGOTO_ERROR (H5E_IO, H5E_CANTFLUSH, FAIL, "unable to flush one or more raw data chunks");
} /* end for */
diff --git a/src/H5Fpkg.h b/src/H5Fpkg.h
index 59e2e48..8160a98 100644
--- a/src/H5Fpkg.h
+++ b/src/H5Fpkg.h
@@ -186,6 +186,10 @@ struct H5F_t {
H5F_mtab_t mtab; /* File mount table */
};
+/* Forward declarations for prototype arguments */
+struct H5D_dxpl_cache_t;
+struct H5D_dcpl_cache_t;
+
/* Private functions, not part of the publicly documented API */
#ifdef NOT_YET
H5_DLL void H5F_encode_length_unusual(const H5F_t *f, uint8_t **p, uint8_t *l);
@@ -197,13 +201,17 @@ H5_DLL herr_t H5F_sieve_overlap_clear(const H5F_t *f, hid_t dxpl_id, haddr_t add
H5_DLL herr_t H5F_istore_init (H5F_t *f);
H5_DLL herr_t H5F_istore_flush (H5F_t *f, hid_t dxpl_id, unsigned flags);
H5_DLL herr_t H5F_istore_dest (H5F_t *f, hid_t dxpl_id);
-H5_DLL ssize_t H5F_istore_readvv(H5F_t *f, hid_t dxpl_id,
- const struct H5O_layout_t *layout, struct H5P_genplist_t *dc_plist, hssize_t chunk_coords[],
+H5_DLL ssize_t H5F_istore_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id,
+ const struct H5O_layout_t *layout, const struct H5D_dcpl_cache_t *dcpl_cache,
+ hssize_t chunk_coords[],
size_t chunk_max_nseq, size_t *chunk_curr_seq, size_t chunk_len_arr[], hsize_t chunk_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *buf);
-H5_DLL ssize_t H5F_istore_writevv(H5F_t *f, hid_t dxpl_id,
- const struct H5O_layout_t *layout, struct H5P_genplist_t *dc_plist, hssize_t chunk_coords[],
+H5_DLL ssize_t H5F_istore_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id,
+ const struct H5O_layout_t *layout, const struct H5D_dcpl_cache_t *dcpl_cache,
+ hssize_t chunk_coords[],
size_t chunk_max_nseq, size_t *chunk_curr_seq, size_t chunk_len_arr[], hsize_t chunk_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *buf);
diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h
index 3b2176c..addb247 100644
--- a/src/H5Fprivate.h
+++ b/src/H5Fprivate.h
@@ -379,6 +379,8 @@ struct H5O_fill_t;
struct H5O_layout_t;
struct H5P_genplist_t;
struct H5S_t;
+struct H5D_dxpl_cache_t;
+struct H5D_dcpl_cache_t;
/* Private functions, not part of the publicly documented API */
H5_DLL herr_t H5F_init(void);
@@ -407,25 +409,25 @@ H5_DLL herr_t H5F_block_write(const H5F_t *f, H5FD_mem_t type, haddr_t addr,
size_t size, hid_t dxpl_id, const void *buf);
/* Functions that operate on byte sequences */
-H5_DLL herr_t H5F_seq_read(H5F_t *f, hid_t dxpl_id,
- const struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const union H5D_storage_t *store,
- size_t seq_len,
- hsize_t file_offset, void *_buf/*out*/);
-H5_DLL herr_t H5F_seq_write (H5F_t *f, hid_t dxpl_id,
- struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const union H5D_storage_t *store,
- size_t seq_len,
- hsize_t file_offset, const void *_buf);
+H5_DLL herr_t H5F_seq_read(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store,
+ size_t seq_len, hsize_t file_offset, void *_buf/*out*/);
+H5_DLL herr_t H5F_seq_write (H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store,
+ size_t seq_len, hsize_t file_offset, const void *_buf);
/* Functions that operate on byte sequences in memory and on disk */
-H5_DLL ssize_t H5F_seq_readvv(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const union H5D_storage_t *store,
+H5_DLL ssize_t H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *buf);
-H5_DLL ssize_t H5F_seq_writevv(H5F_t *f, hid_t dxpl_id, struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const union H5D_storage_t *store,
+H5_DLL ssize_t H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *buf);
@@ -448,9 +450,11 @@ H5_DLL herr_t H5F_istore_allocate (H5F_t *f, hid_t dxpl_id,
H5_DLL hsize_t H5F_istore_allocated(H5F_t *f, hid_t dxpl_id, unsigned ndims, haddr_t addr);
H5_DLL herr_t H5F_istore_dump_btree(H5F_t *f, hid_t dxpl_id, FILE *stream, unsigned ndims,
haddr_t addr);
-H5_DLL herr_t H5F_istore_prune_by_extent( H5F_t *f, hid_t dxpl_id,
+H5_DLL herr_t H5F_istore_prune_by_extent( H5F_t *f,
+ const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
const struct H5O_layout_t *layout, const struct H5S_t *space);
-H5_DLL herr_t H5F_istore_initialize_by_extent( H5F_t *f, hid_t dxpl_id,
+H5_DLL herr_t H5F_istore_initialize_by_extent( H5F_t *f,
+ const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
const struct H5O_layout_t *layout, struct H5P_genplist_t *dc_plist,
const struct H5S_t *space );
H5_DLL herr_t H5F_istore_delete(H5F_t *f, hid_t dxpl_id,
diff --git a/src/H5Fseq.c b/src/H5Fseq.c
index 03c10fe..3e8ce3b 100644
--- a/src/H5Fseq.c
+++ b/src/H5Fseq.c
@@ -68,8 +68,9 @@ static int interface_initialize_g = 0;
*-------------------------------------------------------------------------
*/
herr_t
-H5F_seq_read(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_read(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t seq_len, hsize_t dset_offset, void *buf/*out*/)
{
hsize_t mem_off=0; /* Offset in memory */
@@ -86,7 +87,7 @@ H5F_seq_read(H5F_t *f, hid_t dxpl_id, const H5O_layout_t *layout,
assert(buf);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- if (H5F_seq_readvv(f, dxpl_id, layout, dc_plist, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
+ if (H5F_seq_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "vector read failed");
done:
@@ -116,8 +117,9 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5F_seq_write(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_write(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t seq_len, hsize_t dset_offset, const void *buf)
{
hsize_t mem_off=0; /* Offset in memory */
@@ -134,7 +136,7 @@ H5F_seq_write(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout,
assert(buf);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
- if (H5F_seq_writevv(f, dxpl_id, layout, dc_plist, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
+ if (H5F_seq_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, 1, &dset_curr_seq, &seq_len, &dset_offset, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "vector write failed");
done:
@@ -183,8 +185,9 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_seq_readvv(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_readvv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *buf/*out*/)
@@ -197,7 +200,7 @@ H5F_seq_readvv(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout,
assert(f);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); /* Make certain we have the correct type of property list */
assert(layout);
- assert(dc_plist);
+ assert(dcpl_cache);
assert(dset_curr_seq);
assert(*dset_curr_seq<dset_max_nseq);
assert(dset_len_arr);
@@ -241,7 +244,7 @@ H5F_seq_readvv(H5F_t *f, hid_t dxpl_id, const struct H5O_layout_t *layout,
case H5D_CHUNKED:
assert(store);
- if((ret_value=H5F_istore_readvv(f, dxpl_id, layout, dc_plist, store->chunk_coords,
+ if((ret_value=H5F_istore_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store->chunk_coords,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
buf))<0)
@@ -298,8 +301,9 @@ done:
*-------------------------------------------------------------------------
*/
ssize_t
-H5F_seq_writevv(H5F_t *f, hid_t dxpl_id, struct H5O_layout_t *layout,
- struct H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+H5F_seq_writevv(H5F_t *f, const struct H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, struct H5O_layout_t *layout,
+ const struct H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *buf)
@@ -312,7 +316,7 @@ H5F_seq_writevv(H5F_t *f, hid_t dxpl_id, struct H5O_layout_t *layout,
assert(f);
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); /* Make certain we have the correct type of property list */
assert(layout);
- assert(dc_plist);
+ assert(dcpl_cache);
assert(dset_curr_seq);
assert(*dset_curr_seq<dset_max_nseq);
assert(dset_len_arr);
@@ -356,7 +360,7 @@ H5F_seq_writevv(H5F_t *f, hid_t dxpl_id, struct H5O_layout_t *layout,
case H5D_CHUNKED:
assert(store);
- if((ret_value=H5F_istore_writevv(f, dxpl_id, layout, dc_plist, store->chunk_coords,
+ if((ret_value=H5F_istore_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store->chunk_coords,
dset_max_nseq, dset_curr_seq, dset_len_arr, dset_offset_arr,
mem_max_nseq, mem_curr_seq, mem_len_arr, mem_offset_arr,
buf))<0)
diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c
index 0493db8..a510f85 100644
--- a/src/H5Pdcpl.c
+++ b/src/H5Pdcpl.c
@@ -1388,45 +1388,6 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5P_fill_value_defined
- *
- * Purpose: Check if fill value is defined. Internal version of function
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Raymond Lu
- * Wednesday, January 16, 2002
- *
- * Modifications:
- *
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5P_fill_value_defined(H5P_genplist_t *plist, H5D_fill_value_t *status)
-{
- herr_t ret_value = SUCCEED;
- H5O_fill_t fill;
-
- FUNC_ENTER_NOAPI(H5P_fill_value_defined, FAIL);
-
- assert(plist);
- assert(status);
-
- /* Get the fill value struct */
- if(H5P_get(plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get fill value");
-
- /* Get the fill-value status */
- if(H5P_is_fill_value_defined(&fill, status) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't check fill value status");
-
-done:
- FUNC_LEAVE_NOAPI(ret_value);
-} /* end H5P_fill_value_defined() */
-
-
-/*-------------------------------------------------------------------------
* Function: H5Pfill_value_defined
*
* Purpose: Check if fill value is defined.
@@ -1445,6 +1406,7 @@ herr_t
H5Pfill_value_defined(hid_t plist_id, H5D_fill_value_t *status)
{
H5P_genplist_t *plist;
+ H5O_fill_t fill;
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(H5Pfill_value_defined, FAIL);
@@ -1456,9 +1418,13 @@ H5Pfill_value_defined(hid_t plist_id, H5D_fill_value_t *status)
if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_CREATE)))
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID");
- /* Call the internal function */
- if(H5P_fill_value_defined(plist, status) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get fill value info");
+ /* Get the fill value struct */
+ if(H5P_get(plist, H5D_CRT_FILL_VALUE_NAME, &fill) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get fill value");
+
+ /* Get the fill-value status */
+ if(H5P_is_fill_value_defined(&fill, status) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't check fill value status");
done:
FUNC_LEAVE_API(ret_value);
diff --git a/src/H5Pprivate.h b/src/H5Pprivate.h
index e087624..69990e3 100644
--- a/src/H5Pprivate.h
+++ b/src/H5Pprivate.h
@@ -60,8 +60,6 @@ H5_DLL herr_t H5P_set_vlen_mem_manager(H5P_genplist_t *plist,
void *free_info);
H5_DLL herr_t H5P_is_fill_value_defined(const struct H5O_fill_t *fill,
H5D_fill_value_t *status);
-H5_DLL herr_t H5P_fill_value_defined(H5P_genplist_t *plist,
- H5D_fill_value_t *status);
/* *SPECIAL* Don't make more of these! -QAK */
H5_DLL htri_t H5P_isa_class(hid_t plist_id, hid_t pclass_id);
diff --git a/src/H5Smpio.c b/src/H5Smpio.c
index fca460f..2312347 100644
--- a/src/H5Smpio.c
+++ b/src/H5Smpio.c
@@ -623,9 +623,9 @@ done:
*/
static herr_t
H5S_mpio_spaces_xfer(H5F_t *f, const H5O_layout_t *layout, size_t elmt_size,
- const H5S_t *file_space, const H5S_t *mem_space,
- hid_t dxpl_id, void *_buf /*out*/,
- hbool_t do_write )
+ const H5S_t *file_space, const H5S_t *mem_space,
+ hid_t dxpl_id, void *_buf /*out*/,
+ hbool_t do_write )
{
haddr_t addr; /* Address of dataset (or selection) within file */
size_t mpi_buf_count, mpi_file_count; /* Number of "objects" to transfer */
@@ -740,17 +740,16 @@ done:
*/
herr_t
H5S_mpio_spaces_read(H5F_t *f, const H5O_layout_t *layout,
- H5P_genplist_t UNUSED *dc_plist, const H5D_storage_t UNUSED *store, size_t elmt_size,
- const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id,
- void *buf/*out*/)
+ const H5D_dcpl_cache_t UNUSED *dcpl_cache, const H5D_storage_t UNUSED *store, size_t elmt_size,
+ const H5S_t *file_space, const H5S_t *mem_space, const H5D_dxpl_cache_t UNUSED *dxpl_cache,
+ hid_t dxpl_id, void *buf/*out*/)
{
herr_t ret_value;
FUNC_ENTER_NOAPI(H5S_mpio_spaces_read, FAIL);
- ret_value = H5S_mpio_spaces_xfer(f, layout, elmt_size,
- file_space, mem_space, dxpl_id,
- buf, 0/*read*/);
+ ret_value = H5S_mpio_spaces_xfer(f, layout, elmt_size, file_space,
+ mem_space, dxpl_id, buf, 0/*read*/);
done:
FUNC_LEAVE_NOAPI(ret_value);
@@ -779,17 +778,17 @@ done:
*/
herr_t
H5S_mpio_spaces_write(H5F_t *f, H5O_layout_t *layout,
- H5P_genplist_t UNUSED *dc_plist, const H5D_storage_t UNUSED *store, size_t elmt_size,
- const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id,
- const void *buf)
+ const H5D_dcpl_cache_t UNUSED *dcpl_cache, const H5D_storage_t UNUSED *store, size_t elmt_size,
+ const H5S_t *file_space, const H5S_t *mem_space, const H5D_dxpl_cache_t UNUSED *dxpl_cache,
+ hid_t dxpl_id, const void *buf)
{
herr_t ret_value;
FUNC_ENTER_NOAPI(H5S_mpio_spaces_write, FAIL);
/*OKAY: CAST DISCARDS CONST QUALIFIER*/
- ret_value = H5S_mpio_spaces_xfer(f, layout, elmt_size,
- file_space, mem_space, dxpl_id, (void*)buf, 1/*write*/);
+ ret_value = H5S_mpio_spaces_xfer(f, layout, elmt_size, file_space,
+ mem_space, dxpl_id, (void*)buf, 1/*write*/);
done:
FUNC_LEAVE_NOAPI(ret_value);
diff --git a/src/H5Spkg.h b/src/H5Spkg.h
index e23cda9..5d73fa2 100644
--- a/src/H5Spkg.h
+++ b/src/H5Spkg.h
@@ -261,22 +261,18 @@ H5_DLL herr_t H5S_none_get_seq_list(const H5S_t *space, unsigned flags,
#ifdef H5_HAVE_PARALLEL
/* MPI-IO function to read directly from app buffer to file rky980813 */
-H5_DLL herr_t H5S_mpio_spaces_read(H5F_t *f,
- const struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist,
- const H5D_storage_t *store,
- size_t elmt_size, const H5S_t *file_space,
- const H5S_t *mem_space, hid_t dxpl_id,
- void *buf/*out*/);
+H5_DLL herr_t H5S_mpio_spaces_read(H5F_t *f, const struct H5O_layout_t *layout,
+ const H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
+ size_t elmt_size, const H5S_t *file_space,
+ const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ void *buf/*out*/);
/* MPI-IO function to write directly from app buffer to file rky980813 */
-H5_DLL herr_t H5S_mpio_spaces_write(H5F_t *f,
- struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist,
- const H5D_storage_t *store,
- size_t elmt_size, const H5S_t *file_space,
- const H5S_t *mem_space, hid_t dxpl_id,
- const void *buf);
+H5_DLL herr_t H5S_mpio_spaces_write(H5F_t *f, struct H5O_layout_t *layout,
+ const H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
+ size_t elmt_size, const H5S_t *file_space,
+ const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const void *buf);
/* MPI-IO function to check if a direct I/O transfer is possible between
* memory and the file */
diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h
index a734993..2fcdad7 100644
--- a/src/H5Sprivate.h
+++ b/src/H5Sprivate.h
@@ -128,16 +128,18 @@ typedef struct H5S_conv_t {
/* Read from file to application w/o intermediate scratch buffer */
herr_t (*read)(H5F_t *f, const struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const union H5D_storage_t *store,
+ const H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store,
size_t elmt_size, const H5S_t *file_space,
- const H5S_t *mem_space, hid_t dxpl_id, void *buf/*out*/);
+ const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, void *buf/*out*/);
/* Write directly from app buffer to file */
herr_t (*write)(H5F_t *f, struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const union H5D_storage_t *store,
+ const H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store,
size_t elmt_size, const H5S_t *file_space,
- const H5S_t *mem_space, hid_t dxpl_id, const void *buf);
+ const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const void *buf);
#ifdef H5S_DEBUG
struct {
@@ -191,27 +193,27 @@ H5_DLL herr_t H5S_select_iterate(void *buf, hid_t type_id, const H5S_t *space,
H5_DLL herr_t H5S_select_fill(void *fill, size_t fill_size,
const H5S_t *space, void *buf);
H5_DLL herr_t H5S_select_fscat (H5F_t *f, struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const union H5D_storage_t *store, size_t elmt_size,
+ const H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store, size_t elmt_size,
const H5S_t *file_space, H5S_sel_iter_t *file_iter, hsize_t nelmts,
- hid_t dxpl_id, const void *_buf);
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, const void *_buf);
H5_DLL hsize_t H5S_select_fgath (H5F_t *f, const struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const union H5D_storage_t *store, size_t elmt_size,
+ const H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store, size_t elmt_size,
const H5S_t *file_space, H5S_sel_iter_t *file_iter, hsize_t nelmts,
- hid_t dxpl_id, void *buf);
+ const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, void *buf);
H5_DLL herr_t H5S_select_mscat (const void *_tscat_buf, size_t elmt_size,
const H5S_t *space, H5S_sel_iter_t *iter, hsize_t nelmts,
- hid_t dxpl_id, void *_buf/*out*/);
+ const H5D_dxpl_cache_t *dxpl_cache, void *_buf/*out*/);
H5_DLL hsize_t H5S_select_mgath (const void *_buf, size_t elmt_size,
const H5S_t *space, H5S_sel_iter_t *iter, hsize_t nelmts,
- hid_t dxpl_id, void *_tgath_buf/*out*/);
+ const H5D_dxpl_cache_t *dxpl_cache, void *_tgath_buf/*out*/);
H5_DLL herr_t H5S_select_read(H5F_t *f, const struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const union H5D_storage_t *store, size_t elmt_size,
- const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id,
- void *buf/*out*/);
+ const H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store, size_t elmt_size,
+ const H5S_t *file_space, const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, void *buf/*out*/);
H5_DLL herr_t H5S_select_write(H5F_t *f, struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const union H5D_storage_t *store, size_t elmt_size,
- const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id,
- const void *buf/*out*/);
+ const H5D_dcpl_cache_t *dcpl_cache, const union H5D_storage_t *store, size_t elmt_size,
+ const H5S_t *file_space, const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, const void *buf/*out*/);
H5_DLL htri_t H5S_select_valid(const H5S_t *space);
H5_DLL hssize_t H5S_get_select_npoints(const H5S_t *space);
H5_DLL herr_t H5S_get_select_bounds(const H5S_t *space, hssize_t *start, hssize_t *end);
diff --git a/src/H5Sselect.c b/src/H5Sselect.c
index 3128cb8..a52bb12 100644
--- a/src/H5Sselect.c
+++ b/src/H5Sselect.c
@@ -56,50 +56,6 @@ H5FL_BLK_EXTERN(type_elem);
/*--------------------------------------------------------------------------
NAME
- H5S_get_vector_size
- PURPOSE
- Gets the size of the I/O vector
- USAGE
- ssize_t H5S_get_vector_size(dxpl_id)
- hid_t dxpl_id; IN: The dataset transfer property list to query
- RETURNS
- Non-negative number of entries in I/O vector on success, negative on failure
- DESCRIPTION
- Retrieves the number of I/O vector entries to use for a given dataset
- transfer. If the default dataset property list is used, the default
- number of I/O vectors is returned.
- GLOBAL VARIABLES
- COMMENTS, BUGS, ASSUMPTIONS
- EXAMPLES
- REVISION LOG
---------------------------------------------------------------------------*/
-static ssize_t
-H5S_get_vector_size(hid_t dxpl_id)
-{
- ssize_t ret_value; /* return value */
-
- FUNC_ENTER_NOAPI_NOINIT(H5S_get_vector_size);
-
- if(dxpl_id==H5P_DATASET_XFER_DEFAULT) {
- ret_value=H5D_XFER_HYPER_VECTOR_SIZE_DEF;
- } /* end if */
- else {
- H5P_genplist_t *dx_plist; /* Dataset transfer property list */
-
- /* Get the hyperslab vector size */
- if(NULL == (dx_plist = H5I_object(dxpl_id)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list");
- if (H5P_get(dx_plist,H5D_XFER_HYPER_VECTOR_SIZE_NAME,&ret_value)<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value");
- } /* end else */
-
-done:
- FUNC_LEAVE_NOAPI(ret_value);
-} /* H5S_get_vector_size() */
-
-
-/*--------------------------------------------------------------------------
- NAME
H5S_select_offset
PURPOSE
Set the selection offset for a datapace
@@ -945,10 +901,8 @@ H5S_select_iterate(void *buf, hid_t type_id, const H5S_t *space, H5D_operator_t
assert(space);
assert(op);
- /* Get the hyperslab vector size */
- /* (from the default data transfer property list, for now) */
- if((vector_size=H5S_get_vector_size(H5P_DATASET_XFER_DEFAULT))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get I/O vector size");
+ /* Get the (default) hyperslab vector size */
+ vector_size=H5D_XFER_HYPER_VECTOR_SIZE_DEF;
/* Allocate the vector I/O arrays */
if((len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -1388,10 +1342,8 @@ H5S_select_fill(void *_fill, size_t fill_size, const H5S_t *space, void *_buf)
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "fill value buffer allocation failed");
} /* end if */
- /* Get the hyperslab vector size */
- /* (from the default data transfer property list, for now) */
- if((vector_size=H5S_get_vector_size(H5P_DATASET_XFER_DEFAULT))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get I/O vector size");
+ /* Get the (default) hyperslab vector size */
+ vector_size=H5D_XFER_HYPER_VECTOR_SIZE_DEF;
/* Allocate the vector I/O arrays */
if((len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -1473,9 +1425,10 @@ done:
*/
herr_t
H5S_select_fscat (H5F_t *f, struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+ const H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t elmt_size, const H5S_t *space, H5S_sel_iter_t *iter,
- hsize_t nelmts, hid_t dxpl_id, const void *_buf)
+ hsize_t nelmts, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const void *_buf)
{
const uint8_t *buf=_buf; /* Alias for pointer arithmetic */
hsize_t *off=NULL; /* Array to store sequence offsets */
@@ -1504,8 +1457,7 @@ H5S_select_fscat (H5F_t *f, struct H5O_layout_t *layout,
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
/* Get the hyperslab vector size */
- if((vector_size=H5S_get_vector_size(dxpl_id))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get I/O vector size");
+ vector_size=dxpl_cache->vec_size;
/* Allocate the vector I/O arrays */
if((len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -1528,7 +1480,7 @@ H5S_select_fscat (H5F_t *f, struct H5O_layout_t *layout,
mem_off=0;
/* Write sequence list out */
- if (H5F_seq_writevv(f, dxpl_id, layout, dc_plist, store, nseq, &dset_curr_seq, len, off, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
+ if (H5F_seq_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, nseq, &dset_curr_seq, len, off, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_WRITEERROR, FAIL, "write error");
/* Update buffer */
@@ -1573,9 +1525,10 @@ done:
*/
hsize_t
H5S_select_fgath (H5F_t *f, const struct H5O_layout_t *layout,
- H5P_genplist_t *dc_plist, const H5D_storage_t *store,
+ const H5D_dcpl_cache_t *dcpl_cache, const H5D_storage_t *store,
size_t elmt_size, const H5S_t *space, H5S_sel_iter_t *iter,
- hsize_t nelmts, hid_t dxpl_id, void *_buf/*out*/)
+ hsize_t nelmts, const H5D_dxpl_cache_t *dxpl_cache,
+ hid_t dxpl_id, void *_buf/*out*/)
{
uint8_t *buf=_buf; /* Alias for pointer arithmetic */
hsize_t *off=NULL; /* Array to store sequence offsets */
@@ -1603,8 +1556,7 @@ H5S_select_fgath (H5F_t *f, const struct H5O_layout_t *layout,
assert (_buf);
/* Get the hyperslab vector size */
- if((vector_size=H5S_get_vector_size(dxpl_id))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, 0, "unable to get I/O vector size");
+ vector_size=dxpl_cache->vec_size;
/* Allocate the vector I/O arrays */
if((len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -1627,7 +1579,7 @@ H5S_select_fgath (H5F_t *f, const struct H5O_layout_t *layout,
mem_off=0;
/* Read sequence list in */
- if (H5F_seq_readvv(f, dxpl_id, layout, dc_plist, store, nseq, &dset_curr_seq, len, off, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
+ if (H5F_seq_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store, nseq, &dset_curr_seq, len, off, 1, &mem_curr_seq, &mem_len, &mem_off, buf)<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_READERROR, 0, "read error");
/* Update buffer */
@@ -1666,7 +1618,8 @@ done:
*/
herr_t
H5S_select_mscat (const void *_tscat_buf, size_t elmt_size, const H5S_t *space,
- H5S_sel_iter_t *iter, hsize_t nelmts, hid_t dxpl_id, void *_buf/*out*/)
+ H5S_sel_iter_t *iter, hsize_t nelmts, const H5D_dxpl_cache_t *dxpl_cache,
+ void *_buf/*out*/)
{
uint8_t *buf=(uint8_t *)_buf; /* Get local copies for address arithmetic */
const uint8_t *tscat_buf=(const uint8_t *)_tscat_buf;
@@ -1691,8 +1644,7 @@ H5S_select_mscat (const void *_tscat_buf, size_t elmt_size, const H5S_t *space,
assert (buf);
/* Get the hyperslab vector size */
- if((vector_size=H5S_get_vector_size(dxpl_id))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get I/O vector size");
+ vector_size=dxpl_cache->vec_size;
/* Allocate the vector I/O arrays */
if((len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -1755,7 +1707,8 @@ done:
*/
hsize_t
H5S_select_mgath (const void *_buf, size_t elmt_size, const H5S_t *space,
- H5S_sel_iter_t *iter, hsize_t nelmts, hid_t dxpl_id, void *_tgath_buf/*out*/)
+ H5S_sel_iter_t *iter, hsize_t nelmts, const H5D_dxpl_cache_t *dxpl_cache,
+ void *_tgath_buf/*out*/)
{
const uint8_t *buf=(const uint8_t *)_buf; /* Get local copies for address arithmetic */
uint8_t *tgath_buf=(uint8_t *)_tgath_buf;
@@ -1780,8 +1733,7 @@ H5S_select_mgath (const void *_buf, size_t elmt_size, const H5S_t *space,
assert (tgath_buf);
/* Get the hyperslab vector size */
- if((vector_size=H5S_get_vector_size(dxpl_id))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, 0, "unable to get I/O vector size");
+ vector_size=dxpl_cache->vec_size;
/* Allocate the vector I/O arrays */
if((len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -1838,9 +1790,10 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5S_select_read(H5F_t *f, const H5O_layout_t *layout, H5P_genplist_t *dc_plist,
+H5S_select_read(H5F_t *f, const H5O_layout_t *layout, const H5D_dcpl_cache_t *dcpl_cache,
const H5D_storage_t *store, size_t elmt_size, const H5S_t *file_space,
- const H5S_t *mem_space, hid_t dxpl_id, void *buf/*out*/)
+ const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ void *buf/*out*/)
{
H5S_sel_iter_t mem_iter; /* Memory selection iteration info */
hbool_t mem_iter_init=0; /* Memory selection iteration info has been initialized */
@@ -1880,8 +1833,7 @@ H5S_select_read(H5F_t *f, const H5O_layout_t *layout, H5P_genplist_t *dc_plist,
mem_iter_init=1; /* Memory selection iteration info has been initialized */
/* Get the hyperslab vector size */
- if((vector_size=H5S_get_vector_size(dxpl_id))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get I/O vector size");
+ vector_size=dxpl_cache->vec_size;
/* Allocate the vector I/O arrays */
if((mem_len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -1936,7 +1888,7 @@ HDfprintf(stderr,"%s: file_off[%Zu]=%Hu, file_len[%Zu]=%Zu\n",FUNC,curr_file_seq
HDfprintf(stderr,"%s: mem_off[%Zu]=%Hu, mem_len[%Zu]=%Zu\n",FUNC,curr_mem_seq,mem_off[curr_mem_seq],curr_mem_seq,mem_len[curr_mem_seq]);
#endif /* QAK */
/* Read file sequences into current memory sequence */
- if ((tmp_file_len=H5F_seq_readvv(f, dxpl_id, layout, dc_plist, store,
+ if ((tmp_file_len=H5F_seq_readvv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store,
file_nseq, &curr_file_seq, file_len, file_off,
mem_nseq, &curr_mem_seq, mem_len, mem_off,
buf))<0)
@@ -1987,9 +1939,10 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5S_select_write(H5F_t *f, H5O_layout_t *layout, H5P_genplist_t *dc_plist,
+H5S_select_write(H5F_t *f, H5O_layout_t *layout, const H5D_dcpl_cache_t *dcpl_cache,
const H5D_storage_t *store, size_t elmt_size, const H5S_t *file_space,
- const H5S_t *mem_space, hid_t dxpl_id, const void *buf/*out*/)
+ const H5S_t *mem_space, const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id,
+ const void *buf/*out*/)
{
H5S_sel_iter_t mem_iter; /* Memory selection iteration info */
hbool_t mem_iter_init=0; /* Memory selection iteration info has been initialized */
@@ -2028,8 +1981,7 @@ H5S_select_write(H5F_t *f, H5O_layout_t *layout, H5P_genplist_t *dc_plist,
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
/* Get the hyperslab vector size */
- if((vector_size=H5S_get_vector_size(dxpl_id))<0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get I/O vector size");
+ vector_size=dxpl_cache->vec_size;
/* Allocate the vector I/O arrays */
if((mem_len = H5FL_ARR_MALLOC(size_t,(size_t)vector_size))==NULL)
@@ -2127,7 +2079,7 @@ for(u=curr_mem_seq; u<mem_nseq; u++)
}
#endif /* QAK */
/* Write memory sequences into file sequences */
- if ((tmp_file_len=H5F_seq_writevv(f, dxpl_id, layout, dc_plist, store,
+ if ((tmp_file_len=H5F_seq_writevv(f, dxpl_cache, dxpl_id, layout, dcpl_cache, store,
file_nseq, &curr_file_seq, file_len, file_off,
mem_nseq, &curr_mem_seq, mem_len, mem_off,
buf))<0)
generated by cgit v0.12 at 2024-11-11 10:57:31 (GMT)