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-rw-r--r--src/.distdep648
-rw-r--r--src/H5.c73
-rw-r--r--src/H5D.c233
-rw-r--r--src/H5Distore.c2
-rw-r--r--src/H5Dprivate.h2
-rw-r--r--src/H5E.c1
-rw-r--r--src/H5Epublic.h7
-rw-r--r--src/H5F.c6
-rw-r--r--src/H5Fistore.c2
-rw-r--r--src/H5Fprivate.h18
-rw-r--r--src/H5I.c4
-rw-r--r--src/H5R.c400
-rw-r--r--src/H5Rpublic.h31
-rw-r--r--src/hdf5.h1
14 files changed, 1025 insertions, 403 deletions
diff --git a/src/.distdep b/src/.distdep
index da590af..d76c013 100644
--- a/src/.distdep
+++ b/src/.distdep
@@ -1,3 +1,67 @@
+H5.o: \
+ H5.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5ACprivate.h \
+ H5ACpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Ipublic.h \
+ H5Dpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Iprivate.h \
+ H5MMprivate.h \
+ H5MMpublic.h \
+ H5Pprivate.h \
+ H5Ppublic.h \
+ H5Zpublic.h \
+ H5Rpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
+ H5Gprivate.h \
+ H5Gpublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5Tprivate.h
+H5A.o: \
+ H5A.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5Iprivate.h \
+ H5Ipublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Dpublic.h \
+ H5Dprivate.h \
+ H5Gprivate.h \
+ H5Gpublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5Tprivate.h \
+ H5Tpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
+ H5Zprivate.h \
+ H5Zpublic.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5MMprivate.h \
+ H5MMpublic.h \
+ H5Pprivate.h \
+ H5Ppublic.h \
+ H5Apkg.h \
+ H5Aprivate.h
H5AC.o: \
H5AC.c \
H5private.h \
@@ -29,6 +93,14 @@ H5B.o: \
H5MFprivate.h \
H5MFpublic.h \
H5MMprivate.h
+H5E.o: \
+ H5E.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5Iprivate.h \
+ H5Ipublic.h \
+ H5Eprivate.h
H5Farray.o: \
H5Farray.c \
H5private.h \
@@ -114,6 +186,34 @@ H5Flow.o: \
H5Dpublic.h \
H5MMprivate.h \
H5MMpublic.h
+H5Fmpio.o: \
+ H5Fmpio.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Ipublic.h \
+ H5Dprivate.h \
+ H5Dpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Gprivate.h \
+ H5Gpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5Tprivate.h \
+ H5Tpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
+ H5Zprivate.h \
+ H5Zpublic.h \
+ H5MMprivate.h \
+ H5MMpublic.h
H5Fsec2.o: \
H5Fsec2.c \
H5private.h \
@@ -204,6 +304,53 @@ H5Gnode.o: \
H5Sprivate.h \
H5Spublic.h \
H5Zprivate.h
+H5Gstab.o: \
+ H5Gstab.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5ACprivate.h \
+ H5ACpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Ipublic.h \
+ H5Dpublic.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Gpkg.h \
+ H5Gprivate.h \
+ H5Gpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
+ H5HLprivate.h \
+ H5HLpublic.h \
+ H5MMprivate.h \
+ H5MMpublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5Tprivate.h \
+ H5Tpublic.h \
+ H5Sprivate.h
+H5HG.o: \
+ H5HG.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5ACprivate.h \
+ H5ACpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Ipublic.h \
+ H5Dpublic.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5MFprivate.h \
+ H5MFpublic.h \
+ H5MMprivate.h
H5HL.o: \
H5HL.c \
H5private.h \
@@ -222,6 +369,14 @@ H5HL.o: \
H5MFprivate.h \
H5MFpublic.h \
H5MMprivate.h
+H5I.o: \
+ H5I.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5Iprivate.h \
+ H5Ipublic.h \
+ H5Eprivate.h
H5MF.o: \
H5MF.c \
H5private.h \
@@ -391,6 +546,29 @@ H5Oefl.o: \
H5Sprivate.h \
H5Spublic.h \
H5Zprivate.h
+H5Ofill.o: \
+ H5Ofill.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Ipublic.h \
+ H5Iprivate.h \
+ H5MMprivate.h \
+ H5MMpublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Dpublic.h \
+ H5Gprivate.h \
+ H5Gpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5Tprivate.h
H5Olayout.o: \
H5Olayout.c \
H5private.h \
@@ -547,106 +725,71 @@ H5Ostab.o: \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h
-H5Sall.o: \
- H5Sall.c \
+H5P.o: \
+ H5P.c \
H5private.h \
H5public.h \
H5config.h \
- H5Eprivate.h \
- H5Epublic.h \
+ H5Iprivate.h \
H5Ipublic.h \
- H5Sprivate.h \
- H5Spublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Dpublic.h \
- H5Gprivate.h \
- H5Gpublic.h \
H5Bprivate.h \
H5Bpublic.h \
- H5Oprivate.h \
- H5Opublic.h \
- H5HGprivate.h \
- H5HGpublic.h \
- H5Tprivate.h \
- H5Tpublic.h
-H5Spoint.o: \
- H5Spoint.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Ipublic.h \
- H5MMprivate.h \
- H5MMpublic.h \
- H5Sprivate.h \
- H5Spublic.h \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h \
+ H5Dprivate.h \
H5Gprivate.h \
H5Gpublic.h \
- H5Bprivate.h \
- H5Bpublic.h \
H5Oprivate.h \
H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h \
- H5Vprivate.h
-H5Tbit.o: \
- H5Tbit.c \
- H5private.h \
- H5public.h \
- H5config.h \
H5Eprivate.h \
H5Epublic.h \
+ H5MMprivate.h
+H5RA.o: \
+ H5RA.c \
+ H5RAprivate.h \
+ H5RApublic.h \
H5Ipublic.h \
- H5Iprivate.h \
- H5Tpkg.h \
- H5HGprivate.h \
- H5HGpublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Dpublic.h \
- H5Tprivate.h \
- H5Tpublic.h \
- H5Gprivate.h
-H5V.o: \
- H5V.c \
- H5private.h \
H5public.h \
H5config.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Ipublic.h \
- H5Oprivate.h \
- H5Opublic.h \
+ H5Dprivate.h \
+ H5Dpublic.h \
+ H5private.h \
H5Fprivate.h \
H5Fpublic.h \
- H5Dpublic.h \
H5Gprivate.h \
H5Gpublic.h \
H5Bprivate.h \
H5Bpublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h \
H5Sprivate.h \
- H5Spublic.h
-H5Z.o: \
- H5Z.c \
+ H5Spublic.h \
+ H5Zprivate.h \
+ H5Zpublic.h \
+ H5Eprivate.h \
+ H5Epublic.h
+H5S.o: \
+ H5S.c \
H5private.h \
H5public.h \
H5config.h \
+ H5Iprivate.h \
+ H5Ipublic.h \
H5Eprivate.h \
H5Epublic.h \
- H5Ipublic.h \
H5MMprivate.h \
H5MMpublic.h \
H5Oprivate.h \
@@ -660,89 +803,71 @@ H5Z.o: \
H5Bpublic.h \
H5HGprivate.h \
H5HGpublic.h \
- H5Tprivate.h \
- H5Tpublic.h \
- H5Sprivate.h \
- H5Spublic.h \
- H5Zprivate.h \
- H5Zpublic.h
-H5.o: \
- H5.c \
+ H5Tprivate.h
+H5Sall.o: \
+ H5Sall.c \
H5private.h \
H5public.h \
H5config.h \
- H5ACprivate.h \
- H5ACpublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Ipublic.h \
- H5Dpublic.h \
- H5Bprivate.h \
- H5Bpublic.h \
H5Eprivate.h \
H5Epublic.h \
- H5Iprivate.h \
- H5MMprivate.h \
- H5MMpublic.h \
- H5Pprivate.h \
- H5Ppublic.h \
- H5Zpublic.h \
+ H5Ipublic.h \
H5Sprivate.h \
H5Spublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Dpublic.h \
H5Gprivate.h \
H5Gpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
H5Oprivate.h \
H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h
-H5A.o: \
- H5A.c \
+H5Shyper.o: \
+ H5Shyper.c \
H5private.h \
H5public.h \
H5config.h \
- H5Iprivate.h \
+ H5Eprivate.h \
+ H5Epublic.h \
H5Ipublic.h \
- H5Bprivate.h \
- H5Bpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h \
- H5Dprivate.h \
H5Gprivate.h \
H5Gpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
H5Oprivate.h \
H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h \
- H5Sprivate.h \
- H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h \
- H5Eprivate.h \
- H5Epublic.h \
+ H5Vprivate.h \
H5MMprivate.h \
- H5MMpublic.h \
- H5Pprivate.h \
- H5Ppublic.h \
- H5Apkg.h \
- H5Aprivate.h
-H5D.o: \
- H5D.c \
+ H5MMpublic.h
+H5Smpio.o: \
+ H5Smpio.c \
H5private.h \
H5public.h \
H5config.h \
- H5Iprivate.h \
+ H5Eprivate.h \
+ H5Epublic.h \
H5Ipublic.h \
- H5ACprivate.h \
- H5ACpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h \
- H5Dprivate.h \
H5Gprivate.h \
H5Gpublic.h \
H5Bprivate.h \
@@ -752,87 +877,37 @@ H5D.o: \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
- H5Tpublic.h \
- H5Sprivate.h \
- H5Spublic.h \
- H5Zprivate.h \
- H5Zpublic.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5HLprivate.h \
- H5HLpublic.h \
- H5MFprivate.h \
- H5MFpublic.h \
- H5MMprivate.h \
- H5MMpublic.h \
- H5Pprivate.h \
- H5Ppublic.h \
- H5TBprivate.h
-H5E.o: \
- H5E.c \
+ H5Tpublic.h
+H5Spoint.o: \
+ H5Spoint.c \
H5private.h \
H5public.h \
H5config.h \
- H5Iprivate.h \
+ H5Eprivate.h \
+ H5Epublic.h \
H5Ipublic.h \
- H5Eprivate.h
-H5Gstab.o: \
- H5Gstab.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5ACprivate.h \
- H5ACpublic.h \
+ H5MMprivate.h \
+ H5MMpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
H5Fprivate.h \
H5Fpublic.h \
- H5Ipublic.h \
H5Dpublic.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Gpkg.h \
H5Gprivate.h \
H5Gpublic.h \
H5Bprivate.h \
H5Bpublic.h \
- H5HLprivate.h \
- H5HLpublic.h \
- H5MMprivate.h \
- H5MMpublic.h \
H5Oprivate.h \
H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h \
- H5Sprivate.h
-H5HG.o: \
- H5HG.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5ACprivate.h \
- H5ACpublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Ipublic.h \
- H5Dpublic.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5HGprivate.h \
- H5HGpublic.h \
- H5MFprivate.h \
- H5MFpublic.h \
- H5MMprivate.h
-H5I.o: \
- H5I.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5Iprivate.h \
- H5Ipublic.h \
- H5Eprivate.h
-H5Ofill.o: \
- H5Ofill.c \
+ H5Zprivate.h \
+ H5Zpublic.h \
+ H5Vprivate.h
+H5Sselect.o: \
+ H5Sselect.c \
H5private.h \
H5public.h \
H5config.h \
@@ -842,8 +917,8 @@ H5Ofill.o: \
H5Iprivate.h \
H5MMprivate.h \
H5MMpublic.h \
- H5Oprivate.h \
- H5Opublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h \
@@ -851,24 +926,28 @@ H5Ofill.o: \
H5Gpublic.h \
H5Bprivate.h \
H5Bpublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
- H5Tprivate.h
-H5P.o: \
- H5P.c \
+ H5Tprivate.h \
+ H5Tpublic.h \
+ H5Zprivate.h \
+ H5Zpublic.h
+H5T.o: \
+ H5T.c \
H5private.h \
H5public.h \
H5config.h \
- H5Iprivate.h \
+ H5Dprivate.h \
+ H5Dpublic.h \
H5Ipublic.h \
- H5Bprivate.h \
- H5Bpublic.h \
H5Fprivate.h \
H5Fpublic.h \
- H5Dpublic.h \
- H5Dprivate.h \
H5Gprivate.h \
H5Gpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
H5Oprivate.h \
H5Opublic.h \
H5HGprivate.h \
@@ -879,50 +958,87 @@ H5P.o: \
H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h \
+ H5Iprivate.h \
H5Eprivate.h \
H5Epublic.h \
H5MMprivate.h
-H5R.o: \
- H5R.c \
+H5Tbit.o: \
+ H5Tbit.c \
H5private.h \
H5public.h \
H5config.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Ipublic.h \
+ H5Iprivate.h \
+ H5Tpkg.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Dpublic.h \
+ H5Tprivate.h \
+ H5Tpublic.h \
+ H5Gprivate.h
+H5Tconv.o: \
+ H5Tconv.c \
H5Iprivate.h \
H5Ipublic.h \
- H5Eprivate.h
-H5S.o: \
- H5S.c \
- H5private.h \
H5public.h \
H5config.h \
- H5Iprivate.h \
- H5Ipublic.h \
+ H5private.h \
H5Eprivate.h \
H5Epublic.h \
H5MMprivate.h \
H5MMpublic.h \
- H5Oprivate.h \
- H5Opublic.h \
+ H5Tpkg.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h \
+ H5Tprivate.h \
+ H5Tpublic.h \
H5Gprivate.h \
H5Gpublic.h \
H5Bprivate.h \
- H5Bpublic.h \
+ H5Bpublic.h
+H5Tinit.o: \
+ H5Tinit.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5Iprivate.h \
+ H5Ipublic.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5MMprivate.h \
+ H5MMpublic.h \
+ H5Tpkg.h \
H5HGprivate.h \
H5HGpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Dpublic.h \
H5Tprivate.h
-H5Shyper.o: \
- H5Shyper.c \
+H5TB.o: \
+ H5TB.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5Iprivate.h \
+ H5Ipublic.h \
+ H5Eprivate.h
+H5V.o: \
+ H5V.c \
H5private.h \
H5public.h \
H5config.h \
H5Eprivate.h \
H5Epublic.h \
H5Ipublic.h \
- H5Sprivate.h \
- H5Spublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h \
@@ -930,30 +1046,24 @@ H5Shyper.o: \
H5Gpublic.h \
H5Bprivate.h \
H5Bpublic.h \
- H5Oprivate.h \
- H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h \
- H5Zprivate.h \
- H5Zpublic.h \
- H5Vprivate.h \
- H5MMprivate.h \
- H5MMpublic.h
-H5Sselect.o: \
- H5Sselect.c \
+ H5Sprivate.h \
+ H5Spublic.h
+H5Z.o: \
+ H5Z.c \
H5private.h \
H5public.h \
H5config.h \
H5Eprivate.h \
H5Epublic.h \
H5Ipublic.h \
- H5Iprivate.h \
H5MMprivate.h \
H5MMpublic.h \
- H5Sprivate.h \
- H5Spublic.h \
+ H5Oprivate.h \
+ H5Opublic.h \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h \
@@ -961,24 +1071,27 @@ H5Sselect.o: \
H5Gpublic.h \
H5Bprivate.h \
H5Bpublic.h \
- H5Oprivate.h \
- H5Opublic.h \
H5HGprivate.h \
H5HGpublic.h \
H5Tprivate.h \
H5Tpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h
-H5T.o: \
- H5T.c \
+H5D.o: \
+ H5D.c \
H5private.h \
H5public.h \
H5config.h \
- H5Dprivate.h \
- H5Dpublic.h \
+ H5Iprivate.h \
H5Ipublic.h \
+ H5ACprivate.h \
+ H5ACpublic.h \
H5Fprivate.h \
H5Fpublic.h \
+ H5Dpublic.h \
+ H5Dprivate.h \
H5Gprivate.h \
H5Gpublic.h \
H5Bprivate.h \
@@ -993,26 +1106,24 @@ H5T.o: \
H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h \
- H5Iprivate.h \
H5Eprivate.h \
H5Epublic.h \
- H5MMprivate.h
-H5TB.o: \
- H5TB.c \
+ H5HLprivate.h \
+ H5HLpublic.h \
+ H5MFprivate.h \
+ H5MFpublic.h \
+ H5MMprivate.h \
+ H5MMpublic.h \
+ H5Pprivate.h \
+ H5Ppublic.h \
+ H5TBprivate.h
+H5R.o: \
+ H5R.c \
H5private.h \
H5public.h \
H5config.h \
H5Iprivate.h \
H5Ipublic.h \
- H5Eprivate.h
-H5Fmpio.o: \
- H5Fmpio.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Ipublic.h \
H5Dprivate.h \
H5Dpublic.h \
H5Fprivate.h \
@@ -1031,10 +1142,11 @@ H5Fmpio.o: \
H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h \
- H5MMprivate.h \
- H5MMpublic.h
-H5G.o: \
- H5G.c \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Rprivate.h
+H5F.o: \
+ H5F.c \
H5private.h \
H5public.h \
H5config.h \
@@ -1059,79 +1171,15 @@ H5G.o: \
H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Gpkg.h \
+ H5Iprivate.h \
H5ACprivate.h \
H5ACpublic.h \
- H5HLprivate.h \
- H5HLpublic.h
-H5Smpio.o: \
- H5Smpio.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Ipublic.h \
- H5Sprivate.h \
- H5Spublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Dpublic.h \
- H5Gprivate.h \
- H5Gpublic.h \
- H5Bprivate.h \
- H5Bpublic.h \
- H5Oprivate.h \
- H5Opublic.h \
- H5HGprivate.h \
- H5HGpublic.h \
- H5Tprivate.h \
- H5Tpublic.h
-H5Tconv.o: \
- H5Tconv.c \
- H5Iprivate.h \
- H5Ipublic.h \
- H5public.h \
- H5config.h \
- H5private.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5MMprivate.h \
- H5MMpublic.h \
- H5Tpkg.h \
- H5HGprivate.h \
- H5HGpublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Dpublic.h \
- H5Tprivate.h \
- H5Tpublic.h \
- H5Gprivate.h \
- H5Gpublic.h \
- H5Bprivate.h \
- H5Bpublic.h
-H5Tinit.o: \
- H5Tinit.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5Iprivate.h \
- H5Ipublic.h \
H5Eprivate.h \
H5Epublic.h \
H5MMprivate.h \
- H5MMpublic.h \
- H5Tpkg.h \
- H5HGprivate.h \
- H5HGpublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Dpublic.h \
- H5Tprivate.h
-H5F.o: \
- H5F.c \
+ H5MMpublic.h
+H5G.o: \
+ H5G.c \
H5private.h \
H5public.h \
H5config.h \
@@ -1156,10 +1204,10 @@ H5F.o: \
H5Spublic.h \
H5Zprivate.h \
H5Zpublic.h \
- H5Iprivate.h \
- H5ACprivate.h \
- H5ACpublic.h \
H5Eprivate.h \
H5Epublic.h \
- H5MMprivate.h \
- H5MMpublic.h
+ H5Gpkg.h \
+ H5ACprivate.h \
+ H5ACpublic.h \
+ H5HLprivate.h \
+ H5HLpublic.h
diff --git a/src/H5.c b/src/H5.c
index 5ca82e3..fa6eba3 100644
--- a/src/H5.c
+++ b/src/H5.c
@@ -53,6 +53,7 @@ FILE *fdopen(int fd, const char *mode);
#include <H5Iprivate.h> /*atoms */
#include <H5MMprivate.h> /*memory management */
#include <H5Pprivate.h> /*property lists */
+#include <H5Rpublic.h> /* References */
#include <H5Sprivate.h> /*data spaces */
#include <H5Tprivate.h> /*data types */
#include <H5Zprivate.h> /*filters */
@@ -1911,6 +1912,78 @@ H5_trace (hbool_t returning, const char *func, const char *type, ...)
}
break;
+ case 'r':
+ if (ptr) {
+ if (vp) {
+ fprintf (out, "0x%lx", (unsigned long)vp);
+ } else {
+ fprintf(out, "NULL");
+ }
+ } else {
+ href_t ref = va_arg (ap, href_t);
+ switch (ref.type) {
+ case H5R_BADTYPE:
+ fprintf (out, "H5R_BADTYPE");
+ break;
+ case H5R_OBJECT:
+ fprintf (out, "H5R_OBJECT");
+ break;
+ case H5R_DATASET_REGION:
+ fprintf (out, "H5R_DATASET_REGION");
+ break;
+ case H5R_INTERNAL:
+ fprintf (out, "H5R_INTERNAL");
+ break;
+ case H5R_MAXTYPE:
+ fprintf (out, "H5R_MAXTYPE");
+ break;
+ default:
+ fprintf (out, "BADTYPE(%ld)", (long)ref.type);
+ break;
+ }
+ }
+ break;
+
+ case 'R':
+ switch (type[1]) {
+ case 't':
+ if (ptr) {
+ if (vp) {
+ fprintf(out, "0x%lx", (unsigned long)vp);
+ } else {
+ fprintf(out, "NULL");
+ }
+ } else {
+ H5R_type_t reftype = va_arg(ap, H5R_type_t);
+ switch (reftype) {
+ case H5R_BADTYPE:
+ fprintf(out, "H5R_BADTYPE");
+ break;
+ case H5R_OBJECT:
+ fprintf(out, "H5R_OBJECT");
+ break;
+ case H5R_DATASET_REGION:
+ fprintf(out, "H5R_DATASET_REGION");
+ break;
+ case H5R_INTERNAL:
+ fprintf(out, "H5R_INTERNAL");
+ break;
+ case H5R_MAXTYPE:
+ fprintf(out, "H5R_MAXTYPE");
+ break;
+ default:
+ fprintf(out, "BADTYPE(%ld)", (long)reftype);
+ break;
+ }
+ }
+ break;
+
+ default:
+ fprintf(out, "BADTYPE(S%c)", type[1]);
+ goto error;
+ }
+ break;
+
case 'S':
switch (type[1]) {
case 'c':
diff --git a/src/H5D.c b/src/H5D.c
index 80e9f4f..27b46ca 100644
--- a/src/H5D.c
+++ b/src/H5D.c
@@ -32,10 +32,6 @@ static char RcsId[] = "@(#)$Revision$";
#include <H5Vprivate.h> /* Vector and array functions */
#include <H5Zprivate.h> /* Data filters */
-#ifdef QAK
-int qak_debug=0;
-#endif /* QAK */
-
#define PABLO_MASK H5D_mask
/*
@@ -802,6 +798,52 @@ H5Dextend(hid_t dset_id, const hsize_t *size)
FUNC_LEAVE (SUCCEED);
}
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_new
+ *
+ * Purpose: Creates a new, empty dataset structure
+ *
+ * Return: Success: Pointer to a new dataset descriptor.
+ *
+ * Failure: NULL
+ *
+ * Errors:
+ *
+ * Programmer: Quincey Koziol
+ * Monday, October 12, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+H5D_t *
+H5D_new(const H5D_create_t *create_parms)
+{
+ H5D_t *ret_value = NULL; /*return value */
+
+ FUNC_ENTER(H5D_new, NULL);
+
+ /* check args */
+ /* Nothing to check */
+
+ if (NULL==(ret_value = H5MM_calloc(sizeof(H5D_t)))) {
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
+ "memory allocation failed");
+ }
+ if(create_parms!=NULL)
+ ret_value->create_parms = H5P_copy (H5P_DATASET_CREATE, create_parms);
+ else
+ ret_value->create_parms = H5P_copy (H5P_DATASET_CREATE, &H5D_create_dflt);
+ H5F_addr_undef(&(ret_value->ent.header));
+
+ /* Success */
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5D_new() */
+
/*-------------------------------------------------------------------------
* Function: H5D_create
@@ -871,13 +913,11 @@ H5D_create(H5G_entry_t *loc, const char *name, const H5T_t *type,
}
/* Initialize the dataset object */
- if (NULL==(new_dset = H5MM_calloc(sizeof(H5D_t)))) {
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
+ if (NULL==(new_dset = H5D_new(create_parms))) {
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
"memory allocation failed");
}
- H5F_addr_undef(&(new_dset->ent.header));
new_dset->type = H5T_copy(type, H5T_COPY_ALL);
- new_dset->create_parms = H5P_copy (H5P_DATASET_CREATE, create_parms);
efl = &(new_dset->create_parms->efl);
/* Total raw data size */
@@ -1078,6 +1118,8 @@ H5D_create(H5G_entry_t *loc, const char *name, const H5T_t *type,
* Modifications:
* Robb Matzke, 9 Jun 1998
* The data space message is no longer cached in the dataset struct.
+ * Quincey Koziol, 12 Oct 1998
+ * Moved guts of function into H5D_open_oid
*
*-------------------------------------------------------------------------
*/
@@ -1086,8 +1128,6 @@ H5D_open(H5G_entry_t *loc, const char *name)
{
H5D_t *dataset = NULL; /*the dataset which was found */
H5D_t *ret_value = NULL; /*return value */
- intn i;
- H5S_t *space = NULL;
FUNC_ENTER(H5D_open, NULL);
@@ -1095,52 +1135,93 @@ H5D_open(H5G_entry_t *loc, const char *name)
assert (loc);
assert (name && *name);
- if (NULL==(dataset = H5MM_calloc(sizeof(H5D_t)))) {
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
+ if (NULL==(dataset = H5D_new(NULL))) {
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
"memory allocation failed");
}
- dataset->create_parms = H5P_copy (H5P_DATASET_CREATE, &H5D_create_dflt);
- H5F_addr_undef(&(dataset->ent.header));
- /* Open the dataset object */
+ /* Find the dataset object */
if (H5G_find(loc, name, NULL, &(dataset->ent)) < 0) {
- HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, NULL, "not found");
+ HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, NULL, "not found");
}
+ /* Open the dataset object */
+ if (H5D_open_oid(dataset, NULL) < 0) {
+ HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, NULL, "not found");
+ }
+
+ /* Success */
+ ret_value = dataset;
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5D_open() */
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_open_oid
+ *
+ * Purpose: Opens a dataset for access.
+ *
+ * Return: SUCCEED/FAIL
+ *
+ * Errors:
+ *
+ * Programmer: Quincey Koziol
+ * Monday, October 12, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_open_oid(H5D_t *dataset, H5G_entry_t *ent)
+{
+ herr_t ret_value = FAIL; /*return value */
+ intn i;
+ H5S_t *space = NULL;
+
+ FUNC_ENTER(H5D_open_oid, FAIL);
+
+ /* check args */
+ assert (dataset);
+
+ /* Copy over the symbol table information if it's provided */
+ if(ent!=NULL)
+ HDmemcpy(&(dataset->ent),ent,sizeof(H5G_entry_t));
+
+ /* Find the dataset object */
if (H5O_open(&(dataset->ent)) < 0) {
- HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, NULL, "unable to open");
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open");
}
/* Get the type and space */
if (NULL==(dataset->type=H5O_read(&(dataset->ent), H5O_DTYPE, 0, NULL))) {
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL,
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL,
"unable to load type info from dataset header");
}
if (NULL==(space=H5S_read (&(dataset->ent)))) {
- HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
+ HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, FAIL,
"unable to read data space info from dataset header");
}
/* Get the optional fill value message */
- if (NULL==H5O_read(&(dataset->ent), H5O_FILL, 0,
- &(dataset->create_parms->fill))) {
- H5E_clear();
- HDmemset(&(dataset->create_parms->fill), 0,
- sizeof(dataset->create_parms->fill));
+ if (NULL==H5O_read(&(dataset->ent), H5O_FILL, 0, &(dataset->create_parms->fill))) {
+ H5E_clear();
+ HDmemset(&(dataset->create_parms->fill), 0,
+ sizeof(dataset->create_parms->fill));
}
/* Get the optional filters message */
- if (NULL==H5O_read (&(dataset->ent), H5O_PLINE, 0,
- &(dataset->create_parms->pline))) {
- H5E_clear ();
- HDmemset (&(dataset->create_parms->pline), 0,
- sizeof(dataset->create_parms->pline));
+ if (NULL==H5O_read (&(dataset->ent), H5O_PLINE, 0, &(dataset->create_parms->pline))) {
+ H5E_clear ();
+ HDmemset (&(dataset->create_parms->pline), 0,
+ sizeof(dataset->create_parms->pline));
}
#ifdef HAVE_PARALLEL
/* If MPIO is used, no filter support yet. */
- if (dataset->ent.file->shared->access_parms->driver == H5F_LOW_MPIO &&
- dataset->create_parms->pline.nfilters>0){
- HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, NULL,
+ if (dataset.ent.file->shared->access_parms->driver == H5F_LOW_MPIO &&
+ dataset->create_parms->pline.nfilters>0){
+ HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL,
"Parallel IO does not support filters yet");
}
#endif
@@ -1152,36 +1233,35 @@ H5D_open(H5G_entry_t *loc, const char *name)
* them.
*/
if (NULL==H5O_read(&(dataset->ent), H5O_LAYOUT, 0, &(dataset->layout))) {
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL,
- "unable to read data layout message");
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL,
+ "unable to read data layout message");
}
switch (dataset->layout.type) {
- case H5D_CONTIGUOUS:
- dataset->create_parms->layout = H5D_CONTIGUOUS;
- break;
+ case H5D_CONTIGUOUS:
+ dataset->create_parms->layout = H5D_CONTIGUOUS;
+ break;
- case H5D_CHUNKED:
- /*
- * Chunked storage. The creation plist's dimension is one less than
- * the chunk dimension because the chunk includes a dimension for the
- * individual bytes of the data type.
- */
- dataset->create_parms->layout = H5D_CHUNKED;
- dataset->create_parms->chunk_ndims = dataset->layout.ndims - 1;
- for (i = 0; i < dataset->layout.ndims - 1; i++) {
- dataset->create_parms->chunk_size[i] = dataset->layout.dim[i];
- }
- break;
+ case H5D_CHUNKED:
+ /*
+ * Chunked storage. The creation plist's dimension is one less than
+ * the chunk dimension because the chunk includes a dimension for the
+ * individual bytes of the data type.
+ */
+ dataset->create_parms->layout = H5D_CHUNKED;
+ dataset->create_parms->chunk_ndims = dataset->layout.ndims - 1;
+ for (i = 0; i < dataset->layout.ndims - 1; i++) {
+ dataset->create_parms->chunk_size[i] = dataset->layout.dim[i];
+ }
+ break;
- default:
- HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, NULL, "not implemented yet");
+ default:
+ HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "not implemented yet");
}
/* Get the external file list message, which might not exist */
- if (NULL==H5O_read (&(dataset->ent), H5O_EFL, 0,
- &(dataset->create_parms->efl)) &&
- !H5F_addr_defined (&(dataset->layout.addr))) {
- HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
+ if (NULL==H5O_read (&(dataset->ent), H5O_EFL, 0, &(dataset->create_parms->efl)) &&
+ !H5F_addr_defined (&(dataset->layout.addr))) {
+ HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, FAIL,
"storage address is undefined an no external file list");
}
@@ -1190,35 +1270,34 @@ H5D_open(H5G_entry_t *loc, const char *name)
* This is especially important for parallel I/O where the B-tree must
* be fully populated before I/O can happen.
*/
- if ((dataset->ent.file->intent & H5F_ACC_RDWR) &&
- H5D_CHUNKED==dataset->layout.type) {
- if (H5D_init_storage(dataset, space)<0) {
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL,
- "unable to initialize file storage");
- }
+ if ((dataset->ent.file->intent & H5F_ACC_RDWR) && H5D_CHUNKED==dataset->layout.type) {
+ if (H5D_init_storage(dataset, space)<0) {
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL,
+ "unable to initialize file storage");
+ }
}
/* Success */
- ret_value = dataset;
+ ret_value = SUCCEED;
- done:
+done:
if (space)
- H5S_close (space);
- if (!ret_value && dataset) {
- if (H5F_addr_defined(&(dataset->ent.header))) {
- H5O_close(&(dataset->ent));
- }
- if (dataset->type) {
- H5T_close(dataset->type);
- }
- if (dataset->create_parms) {
- H5P_close (H5P_DATASET_CREATE, dataset->create_parms);
- }
- dataset->ent.file = NULL;
- H5MM_xfree(dataset);
+ H5S_close (space);
+ if (ret_value==FAIL && dataset) {
+ if (H5F_addr_defined(&(dataset->ent.header))) {
+ H5O_close(&(dataset->ent));
+ }
+ if (dataset->type) {
+ H5T_close(dataset->type);
+ }
+ if (dataset->create_parms) {
+ H5P_close (H5P_DATASET_CREATE, dataset->create_parms);
+ }
+ dataset->ent.file = NULL;
+ H5MM_xfree(dataset);
}
FUNC_LEAVE(ret_value);
-}
+} /* end H5D_open_oid() */
/*-------------------------------------------------------------------------
* Function: H5D_close
diff --git a/src/H5Distore.c b/src/H5Distore.c
index ed0659e..fc78c89 100644
--- a/src/H5Distore.c
+++ b/src/H5Distore.c
@@ -1173,7 +1173,7 @@ H5F_istore_lock (H5F_t *f, const H5O_layout_t *layout,
const H5O_fill_t *fill, const hssize_t offset[],
hbool_t relax, intn *idx_hint/*in,out*/)
{
- uintn idx; /*hash index number */
+ uintn idx=0; /*hash index number */
hbool_t found = FALSE; /*already in cache? */
H5F_rdcc_t *rdcc = &(f->shared->rdcc);/*raw data chunk cache*/
H5F_rdcc_ent_t *ent = NULL; /*cache entry */
diff --git a/src/H5Dprivate.h b/src/H5Dprivate.h
index 1f23d82..f89e9b3 100644
--- a/src/H5Dprivate.h
+++ b/src/H5Dprivate.h
@@ -81,5 +81,7 @@ herr_t H5D_extend (H5D_t *dataset, const hsize_t *size);
H5G_entry_t *H5D_entof (H5D_t *dataset);
H5T_t *H5D_typeof (H5D_t *dset);
H5S_t *H5D_get_space(H5D_t *dset);
+H5D_t * H5D_new(const H5D_create_t *create_parms);
+herr_t H5D_open_oid(H5D_t *dataset, H5G_entry_t *ent);
#endif
diff --git a/src/H5E.c b/src/H5E.c
index 5123b5e..a1baf32 100644
--- a/src/H5E.c
+++ b/src/H5E.c
@@ -58,6 +58,7 @@ static const H5E_major_mesg_t H5E_major_mesg_g[] = {
{H5E_PLINE, "Data filters layer"},
{H5E_EFL, "External file list"},
{H5E_RAGGED, "Ragged array layer"},
+ {H5E_REFERENCE, "References layer"},
};
static const H5E_minor_mesg_t H5E_minor_mesg_g[] = {
diff --git a/src/H5Epublic.h b/src/H5Epublic.h
index fed1296..06a087c 100644
--- a/src/H5Epublic.h
+++ b/src/H5Epublic.h
@@ -72,9 +72,10 @@ typedef enum H5E_major_t {
H5E_STORAGE, /*data storage */
H5E_PLIST, /*Property lists */
H5E_ATTR, /*Attribute */
- H5E_PLINE, /*Data filters */
- H5E_EFL, /*External file list */
- H5E_RAGGED /*Ragged arrays */
+ H5E_PLINE, /*Data filters */
+ H5E_EFL, /*External file list */
+ H5E_RAGGED, /*Ragged arrays */
+ H5E_REFERENCE /*References */
} H5E_major_t;
/* Declare an enumerated type which holds all the valid minor HDF error codes */
diff --git a/src/H5F.c b/src/H5F.c
index 7b7a3ec..9436104 100644
--- a/src/H5F.c
+++ b/src/H5F.c
@@ -1687,7 +1687,7 @@ H5Fclose(hid_t file_id)
*/
static herr_t
H5F_mount(H5G_entry_t *loc, const char *name, H5F_t *child,
- const H5F_mprop_t *plist)
+ const H5F_mprop_t __unused__ *plist)
{
H5G_t *mount_point = NULL; /*mount point group */
H5G_entry_t *mp_ent = NULL; /*mount point symbol table entry*/
@@ -1809,7 +1809,7 @@ H5F_unmount(H5G_entry_t *loc, const char *name)
H5G_entry_t *ent = NULL; /*temporary symbol table entry */
herr_t ret_value = FAIL; /*return value */
uintn i; /*coutners */
- intn lt, rt, md, cmp; /*binary search indices */
+ intn lt, rt, md=(-1), cmp; /*binary search indices */
FUNC_ENTER(H5F_unmount, FAIL);
assert(loc);
@@ -1909,7 +1909,7 @@ herr_t
H5F_mountpoint(H5G_entry_t *find/*in,out*/)
{
H5F_t *parent = find->file;
- intn lt, rt, md, cmp;
+ intn lt, rt, md=(-1), cmp;
H5G_entry_t *ent = NULL;
FUNC_ENTER(H5F_mountpoint, FAIL);
diff --git a/src/H5Fistore.c b/src/H5Fistore.c
index ed0659e..fc78c89 100644
--- a/src/H5Fistore.c
+++ b/src/H5Fistore.c
@@ -1173,7 +1173,7 @@ H5F_istore_lock (H5F_t *f, const H5O_layout_t *layout,
const H5O_fill_t *fill, const hssize_t offset[],
hbool_t relax, intn *idx_hint/*in,out*/)
{
- uintn idx; /*hash index number */
+ uintn idx=0; /*hash index number */
hbool_t found = FALSE; /*already in cache? */
H5F_rdcc_t *rdcc = &(f->shared->rdcc);/*raw data chunk cache*/
H5F_rdcc_ent_t *ent = NULL; /*cache entry */
diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h
index 74e67d0..8ba9613 100644
--- a/src/H5Fprivate.h
+++ b/src/H5Fprivate.h
@@ -1,13 +1,13 @@
/****************************************************************************
- * NCSA HDF *
- * Software Development Group *
- * National Center for Supercomputing Applications *
- * University of Illinois at Urbana-Champaign *
- * 605 E. Springfield, Champaign IL 61820 *
- * *
- * For conditions of distribution and use, see the accompanying *
- * hdf/COPYING file. *
- * *
+ * NCSA HDF *
+ * Software Development Group *
+ * National Center for Supercomputing Applications *
+ * University of Illinois at Urbana-Champaign *
+ * 605 E. Springfield, Champaign IL 61820 *
+ * *
+ * For conditions of distribution and use, see the accompanying *
+ * hdf/COPYING file. *
+ * *
****************************************************************************/
/* $Id$ */
diff --git a/src/H5I.c b/src/H5I.c
index 2de9b25..91c8b1a 100644
--- a/src/H5I.c
+++ b/src/H5I.c
@@ -159,11 +159,7 @@ H5I_init_interface(void)
* Make certain the ID types don't overflow the number of bits allocated
* for them in an ID.
*/
-#if 0
- assert((int)H5I_MAXID<=(int)pow((double)2.0,(double)GROUP_BITS));
-#else
assert(H5I_MAXID<=(1<<GROUP_BITS));
-#endif
/* Registers the cleanup routine with the exit chain */
ret_value = H5_add_exit(&H5I_term_interface);
diff --git a/src/H5R.c b/src/H5R.c
index 791e6e7..88ab707 100644
--- a/src/H5R.c
+++ b/src/H5R.c
@@ -16,10 +16,13 @@ static char RcsId[] = "@(#)$Revision$";
/* $Id$ */
-#include <H5private.h> /* Generic Functions */
-#include <H5Iprivate.h> /* ID Functions */
-#include <H5Eprivate.h> /* Error handling */
-#include <H5Rprivate.h> /* Data-space functions */
+#include <H5private.h> /* Generic Functions */
+#include <H5Iprivate.h> /* ID Functions */
+#include <H5Dprivate.h> /* Datasets */
+#include <H5Eprivate.h> /* Error handling */
+#include <H5Gprivate.h> /* Groups */
+#include <H5Rprivate.h> /* References */
+#include <H5Sprivate.h> /* Dataspaces */
/* Interface initialization */
#define PABLO_MASK H5R_mask
@@ -28,6 +31,13 @@ static intn interface_initialize_g = FALSE;
static herr_t H5R_init_interface(void);
static void H5R_term_interface(void);
+/* Static functions */
+static herr_t H5R_create(href_t *ref, H5G_entry_t *loc, const char *name,
+ H5R_type_t ref_type, H5S_t *space);
+static hid_t H5R_dereference(href_t *ref);
+static H5S_t * H5R_get_space(href_t *ref);
+static H5R_type_t H5R_get_type(href_t *ref);
+
/*--------------------------------------------------------------------------
NAME
@@ -65,7 +75,7 @@ H5R_init_interface(void)
USAGE
void H5R_term_interface()
RETURNS
- SUCCEED/FAIL
+ void
DESCRIPTION
Release the atom group and any other resources allocated.
GLOBAL VARIABLES
@@ -81,3 +91,383 @@ H5R_term_interface(void)
H5I_destroy_group(H5I_REFERENCE);
} /* end H5R_term_interface() */
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5R_create
+ PURPOSE
+ Creates a particular kind of reference for the user
+ USAGE
+ herr_t H5R_create(ref, loc, name, ref_type, space)
+ href_t *ref; OUT: Reference created
+ H5G_entry_t *loc; IN: File location used to locate object pointed to
+ const char *name; IN: Name of object at location LOC_ID of object
+ pointed to
+ H5R_type_t ref_type; IN: Type of reference to create
+ H5S_t *space; IN: Dataspace ID with selection, used for Dataset
+ Region references.
+
+ RETURNS
+ SUCCEED/FAIL
+ DESCRIPTION
+ Creates a particular type of reference specified with REF_TYPE, in the
+ space pointed to by REF. The LOC_ID and NAME are used to locate the object
+ pointed to and the SPACE_ID is used to choose the region pointed to (for
+ Dataset Region references).
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static herr_t
+H5R_create(href_t *ref, H5G_entry_t *loc, const char *name, H5R_type_t ref_type, H5S_t __unused__ *space)
+{
+ H5G_stat_t sb; /* Stat buffer for retrieving OID */
+ herr_t ret_value = FAIL;
+
+ FUNC_ENTER(H5R_create, FAIL);
+
+ assert(ref);
+ assert(loc);
+ assert(name);
+ assert(ref_type>H5R_BADTYPE || ref_type<H5R_MAXTYPE);
+
+ if (H5G_get_objinfo (loc, name, 0, &sb)<0)
+ HGOTO_ERROR (H5E_REFERENCE, H5E_NOTFOUND, FAIL, "unable to stat object");
+
+ /* Set information for reference */
+ ref->type=ref_type;
+ ref->objno[0]=sb.objno[0];
+ ref->objno[1]=sb.objno[1];
+ ref->file=loc->file;
+
+ /* Return success */
+ ret_value=SUCCEED;
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5R_create() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5Rcreate
+ PURPOSE
+ Creates a particular kind of reference for the user
+ USAGE
+ herr_t H5Rcreate(ref, loc_id, name, ref_type, space_id)
+ href_t *ref; OUT: Reference created
+ hid_t loc_id; IN: Location ID used to locate object pointed to
+ const char *name; IN: Name of object at location LOC_ID of object
+ pointed to
+ H5R_type_t ref_type; IN: Type of reference to create
+ hid_t space_id; IN: Dataspace ID with selection, used for Dataset
+ Region references.
+
+ RETURNS
+ SUCCEED/FAIL
+ DESCRIPTION
+ Creates a particular type of reference specified with REF_TYPE, in the
+ space pointed to by REF. The LOC_ID and NAME are used to locate the object
+ pointed to and the SPACE_ID is used to choose the region pointed to (for
+ Dataset Region references).
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5Rcreate(href_t *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, hid_t space_id)
+{
+ H5G_entry_t *loc = NULL; /* File location */
+ H5S_t *space = NULL; /* Pointer to dataspace containing region */
+ herr_t ret_value = FAIL;
+
+ FUNC_ENTER(H5Rcreate, FAIL);
+ H5TRACE5("e","*risRti",ref,loc_id,name,ref_type,space_id);
+
+ /* Check args */
+ if(ref==NULL)
+ HRETURN_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference pointer");
+ if (NULL==(loc=H5G_loc (loc_id)))
+ HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a location");
+ if (!name || !*name)
+ HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name given");
+ if(ref_type<=H5R_BADTYPE || ref_type>=H5R_MAXTYPE)
+ HRETURN_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference type");
+ if(ref_type!=H5R_OBJECT)
+ HRETURN_ERROR (H5E_ARGS, H5E_UNSUPPORTED, FAIL, "reference type not supported");
+ if (space_id!=(-1) && (H5I_DATASPACE!=H5I_get_type (space_id) || NULL==(space=H5I_object (space_id))))
+ HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace");
+
+ /* Create reference */
+ if ((ret_value=H5R_create(ref,loc,name,ref_type,space))<0)
+ HGOTO_ERROR (H5E_REFERENCE, H5E_CANTINIT, FAIL, "unable to create reference");
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5Rcreate() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5R_dereference
+ PURPOSE
+ Opens the HDF5 object referenced.
+ USAGE
+ hid_t H5R_dereference(ref)
+ href_t *ref; IN: Reference to open.
+
+ RETURNS
+ Valid ID on success, FAIL on failure
+ DESCRIPTION
+ Given a reference to some object, open that object and return an ID for
+ that object.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Currently only set up to work with references to datasets
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static hid_t
+H5R_dereference(href_t *ref)
+{
+ H5D_t *dataset; /* Pointer to dataset to open */
+ H5G_entry_t ent; /* Symbol table entry */
+ hid_t ret_value = FAIL;
+
+ FUNC_ENTER(H5R_dereference, FAIL);
+
+ assert(ref);
+
+ /*
+ * Switch on object type, when we implement that feature, always try to
+ * open a dataset for now
+ */
+ /* Allocate the dataset structure */
+ if (NULL==(dataset = H5D_new(NULL))) {
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
+ "memory allocation failed");
+ }
+
+ /* Initialize the symbol table entry */
+ HDmemset(&ent,0,sizeof(H5G_entry_t));
+ HDmemcpy(&(ent.header),ref->objno,sizeof(haddr_t));
+ ent.type=H5G_NOTHING_CACHED;
+ ent.file=ref->file;
+
+ /* Open the dataset object */
+ if (H5D_open_oid(dataset, &ent) < 0) {
+ HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, NULL, "not found");
+ }
+
+ /* Create an atom for the dataset */
+ if ((ret_value = H5I_register(H5I_DATASET, dataset)) < 0) {
+ H5D_close(dataset);
+ HRETURN_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL,
+ "can't register dataset");
+ }
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5R_dereference() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5Rdereference
+ PURPOSE
+ Opens the HDF5 object referenced.
+ USAGE
+ hid_t H5Rdereference(ref)
+ href_t *ref; IN: Reference to open.
+
+ RETURNS
+ Valid ID on success, FAIL on failure
+ DESCRIPTION
+ Given a reference to some object, open that object and return an ID for
+ that object.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+hid_t
+H5Rdereference(href_t *ref)
+{
+ hid_t ret_value = FAIL;
+
+ FUNC_ENTER(H5Rdereference, FAIL);
+ H5TRACE1("i","*r",ref);
+
+ /* Check args */
+ if(ref==NULL)
+ HRETURN_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference pointer");
+
+ /* Create reference */
+ if ((ret_value=H5R_dereference(ref))<0)
+ HGOTO_ERROR (H5E_REFERENCE, H5E_CANTINIT, FAIL, "unable dereference object");
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5Rdereference() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5R_get_space
+ PURPOSE
+ Retrieves a dataspace with the region pointed to selected.
+ USAGE
+ H5S_t *H5R_get_space(ref)
+ href_t *ref; IN: Reference to open.
+
+ RETURNS
+ Pointer to the dataspace on success, NULL on failure
+ DESCRIPTION
+ Given a reference to some object, creates a copy of the dataset pointed
+ to's dataspace and defines a selection in the copy which is the region
+ pointed to.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static H5S_t *
+H5R_get_space(href_t __unused__ *ref)
+{
+ H5S_t *ret_value = NULL;
+
+ FUNC_ENTER(H5R_get_space, NULL);
+
+ assert(ref);
+
+#ifdef LATER
+done:
+#endif /* LATER */
+ FUNC_LEAVE(ret_value);
+} /* end H5R_get_space() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5Rget_space
+ PURPOSE
+ Retrieves a dataspace with the region pointed to selected.
+ USAGE
+ hid_t H5Rget_space(ref)
+ href_t *ref; IN: Reference to open.
+
+ RETURNS
+ Valid ID on success, FAIL on failure
+ DESCRIPTION
+ Given a reference to some object, creates a copy of the dataset pointed
+ to's dataspace and defines a selection in the copy which is the region
+ pointed to.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+hid_t
+H5Rget_space(href_t *ref)
+{
+ H5S_t *space = NULL;
+ hid_t ret_value = FAIL;
+
+ FUNC_ENTER(H5Rget_space, FAIL);
+ H5TRACE1("i","*r",ref);
+
+ /* Check args */
+ if(ref==NULL)
+ HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference pointer");
+
+ /* Create reference */
+ if ((space=H5R_get_space(ref))==NULL)
+ HGOTO_ERROR (H5E_REFERENCE, H5E_CANTCREATE, FAIL, "unable to create dataspace");
+
+ /* Atomize */
+ if ((ret_value=H5I_register (H5I_DATASPACE, space))<0)
+ HGOTO_ERROR (H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace atom");
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5Rget_space() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5R_get_type
+ PURPOSE
+ Retrieves the type of a reference.
+ USAGE
+ H5R_type_t H5R_get_type(ref)
+ href_t *ref; IN: Reference to open.
+
+ RETURNS
+ Reference type on success, <0 on failure
+ DESCRIPTION
+ Given a reference to some object, returns the type of reference. See
+ list of valid H5R_type_t in H5Rpublic.h
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static H5R_type_t
+H5R_get_type(href_t *ref)
+{
+ H5R_type_t ret_value = H5R_BADTYPE;
+
+ FUNC_ENTER(H5R_get_type, H5R_BADTYPE);
+
+ assert(ref);
+
+ ret_value=ref->type;
+
+#ifdef LATER
+done:
+#endif /* LATER */
+ FUNC_LEAVE(ret_value);
+} /* end H5R_get_type() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5Rget_type
+ PURPOSE
+ Retrieves the type of a reference.
+ USAGE
+ H5R_type_t H5Rget_space(ref)
+ href_t *ref; IN: Reference to open.
+
+ RETURNS
+ Valid reference type on success, <0 on failure
+ DESCRIPTION
+ Given a reference to some object, returns the type of reference. See
+ list of valid H5R_type_t in H5Rpublic.h
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+H5R_type_t
+H5Rget_type(href_t *ref)
+{
+ H5R_type_t ret_value = H5R_BADTYPE;
+
+ FUNC_ENTER(H5Rget_type, FAIL);
+ H5TRACE1("Rt","*r",ref);
+
+ /* Check args */
+ if(ref==NULL)
+ HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference pointer");
+
+ /* Create reference */
+ if ((ret_value=H5R_get_type(ref))<0)
+ HGOTO_ERROR (H5E_REFERENCE, H5E_CANTCREATE, FAIL, "unable to check reference type");
+
+done:
+ FUNC_LEAVE(ret_value);
+} /* end H5Rget_type() */
+
diff --git a/src/H5Rpublic.h b/src/H5Rpublic.h
index 6d6abb3..121a853 100644
--- a/src/H5Rpublic.h
+++ b/src/H5Rpublic.h
@@ -20,6 +20,32 @@
#include <H5public.h>
#include <H5Ipublic.h>
+/*
+ * Reference types allowed.
+ */
+typedef enum {
+ H5R_BADTYPE = (-1), /* invalid Reference Type */
+ H5R_OBJECT, /* Object reference */
+ H5R_DATASET_REGION, /* Dataset Region Reference */
+ H5R_INTERNAL, /* Internal Reference */
+ H5R_MAXTYPE /* highest type in group (Invalid as true type)*/
+} H5R_type_t;
+
+/* Reference structure for user's code */
+typedef struct {
+ H5R_type_t type; /* Type of reference information in union */
+ unsigned long objno[2]; /* OID of object referenced */
+ struct H5F_t *file; /* Pointer to the file the reference is in */
+ union { /* union to hold structs */
+ struct {
+ } obj; /* Object reference structure */
+ struct {
+ } dreg; /* Dataset Region reference structure */
+ struct {
+ } intrl; /* Internal reference structure */
+ }u;
+} href_t;
+
/* Publicly visible datastructures */
#ifdef __cplusplus
@@ -27,6 +53,11 @@ extern "C" {
#endif
/* Functions in H5R.c */
+herr_t H5Rcreate(href_t *ref, hid_t loc_id, const char *name,
+ H5R_type_t ref_type, hid_t space_id);
+hid_t H5Rdereference(href_t *ref);
+hid_t H5Rget_space(href_t *ref);
+H5R_type_t H5Rget_type(href_t *ref);
#ifdef __cplusplus
}
diff --git a/src/hdf5.h b/src/hdf5.h
index be9b2b6..d7d5312 100644
--- a/src/hdf5.h
+++ b/src/hdf5.h
@@ -33,6 +33,7 @@
#include <H5MMpublic.h> /* Core memory management */
#include <H5Opublic.h> /* Object headers */
#include <H5Ppublic.h> /* Property lists */
+#include <H5Rpublic.h> /* References */
#include <H5RApublic.h> /* Ragged arrays */
#include <H5Spublic.h> /* Dataspaces */
#include <H5Tpublic.h> /* Datatypes */