diff options
Diffstat (limited to 'src')
| -rw-r--r-- | src/H5FD.c | 4 | ||||
| -rw-r--r-- | src/H5Fsuper.c | 2 | ||||
| -rw-r--r-- | src/H5MF.c | 48 | ||||
| -rw-r--r-- | src/H5MFdbg.c | 6 | ||||
| -rw-r--r-- | src/H5Mpublic.h | 3 | ||||
| -rw-r--r-- | src/H5Ofsinfo.c | 10 | ||||
| -rw-r--r-- | src/H5Pdcpl.c | 8 | ||||
| -rw-r--r-- | src/H5Shyper.c | 5 | ||||
| -rw-r--r-- | src/H5Spkg.h | 7 | ||||
| -rw-r--r-- | src/H5Sselect.c | 215 | ||||
| -rw-r--r-- | src/H5T.c | 1 | ||||
| -rw-r--r-- | src/H5private.h | 7 | ||||
| -rw-r--r-- | src/hdf5-lin.lnt | 3 | ||||
| -rw-r--r-- | src/hdf5.lnt | 7 |
14 files changed, 180 insertions, 146 deletions
@@ -241,7 +241,7 @@ H5FDregister(const H5FD_class_t *cls) HGOTO_ERROR(H5E_ARGS, H5E_UNINITIALIZED, H5I_INVALID_HID, "'get_eof' method is not defined") if(!cls->read || !cls->write) HGOTO_ERROR(H5E_ARGS, H5E_UNINITIALIZED, H5I_INVALID_HID, "'read' and/or 'write' method is not defined") - for (type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,type)) + for (type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) if(cls->fl_map[type] < H5FD_MEM_NOLIST || cls->fl_map[type] >= H5FD_MEM_NTYPES) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "invalid free-list mapping") @@ -286,7 +286,7 @@ H5FD_register(const void *_cls, size_t size, hbool_t app_ref) HDassert(cls->get_eoa && cls->set_eoa); HDassert(cls->get_eof); HDassert(cls->read && cls->write); - for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) { HDassert(cls->fl_map[type] >= H5FD_MEM_NOLIST && cls->fl_map[type] < H5FD_MEM_NTYPES); } diff --git a/src/H5Fsuper.c b/src/H5Fsuper.c index f8e8f3f..e5d4cde 100644 --- a/src/H5Fsuper.c +++ b/src/H5Fsuper.c @@ -1394,7 +1394,7 @@ H5F__super_init(H5F_t *f) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set version of fsinfo") f->shared->fs_version = fsinfo.version; - for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++) fsinfo.fs_addr[ptype - 1] = HADDR_UNDEF; if(H5O_msg_create(&ext_loc, H5O_FSINFO_ID, H5O_MSG_FLAG_DONTSHARE | H5O_MSG_FLAG_MARK_IF_UNKNOWN, H5O_UPDATE_TIME, &fsinfo) < 0) @@ -163,7 +163,7 @@ H5MF_init_merge_flags(H5F_shared_t *f_sh) * can merge with the metadata or small 'raw' data aggregator */ all_same = TRUE; - for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) /* Check for any different type mappings */ if(f_sh->fs_type_map[type] != f_sh->fs_type_map[H5FD_MEM_DEFAULT]) { all_same = FALSE; @@ -187,7 +187,7 @@ H5MF_init_merge_flags(H5F_shared_t *f_sh) /* One or more allocation type don't map to the same free list type */ /* Check if all the metadata allocation types map to the same type */ all_metadata_same = TRUE; - for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) + for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++) /* Skip checking raw data free list mapping */ /* (global heap is treated as raw data) */ if(type != H5FD_MEM_DRAW && type != H5FD_MEM_GHEAP) { @@ -1686,7 +1686,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); /* Iterate over all the free space types that have managers and * get each free list's space */ - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) { + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) { /* Test to see if we need to switch rings -- do so if required */ if(H5MF__fsm_type_is_self_referential(f->shared, ptype)) needed_ring = H5AC_RING_MDFSM; @@ -1708,7 +1708,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); /* Iterate over all the free space types that have managers and * get each free list's space */ - for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) { /* Test to see if we need to switch rings -- do so if required */ if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type)) needed_ring = H5AC_RING_MDFSM; @@ -1807,9 +1807,9 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); * * In passing, verify that all the free space managers are closed. */ - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) fsinfo.fs_addr[ptype - 1] = HADDR_UNDEF; - for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) + for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++) fsinfo.fs_addr[type-1] = f->shared->fs_addr[type]; fsinfo.strategy = f->shared->fs_strategy; fsinfo.persist = f->shared->fs_persist; @@ -1824,7 +1824,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); HGOTO_ERROR(H5E_RESOURCE, H5E_WRITEERROR, FAIL, "error in writing message to superblock extension") /* Close the free space managers */ - for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { + for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++) { if(f->shared->fs_man[type]) { /* Test to see if we need to switch rings -- do so if required */ if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type)) @@ -1877,7 +1877,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); HDassert(H5F_NULL_FSM_ADDR(f) || final_eoa == f->shared->eoa_fsm_fsalloc); } /* end if */ else { /* super_vers can be 0, 1, 2 */ - for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) if(H5MF__close_delete_fstype(f, (H5F_mem_page_t)type) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't initialize file free space") } /* end else */ @@ -1958,7 +1958,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); fsinfo.eoa_pre_fsm_fsalloc = HADDR_UNDEF; fsinfo.version = f->shared->fs_version; - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) fsinfo.fs_addr[ptype - 1] = HADDR_UNDEF; if(f->shared->fs_persist) { @@ -1980,7 +1980,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); * file space for the self referential free space managers. Other * data was gathered above. */ - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) fsinfo.fs_addr[ptype-1] = f->shared->fs_addr[ptype]; fsinfo.eoa_pre_fsm_fsalloc = f->shared->eoa_fsm_fsalloc; @@ -1990,7 +1990,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); /* Close the free space managers */ /* use H5MF__close_fstype() for this? */ - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) { + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) { if(f->shared->fs_man[ptype]) { /* Test to see if we need to switch rings -- do so if required */ if(H5MF__fsm_type_is_self_referential(f->shared, ptype)) @@ -2052,7 +2052,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); /* Iterate over all the free space types that have managers * and get each free list's space */ - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) if(H5MF__close_delete_fstype(f, ptype) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't close the free space manager") @@ -2125,7 +2125,7 @@ H5MF__close_shrink_eoa(H5F_t *f) if(H5F_PAGED_AGGR(f)) { /* Check the last section of each free-space manager */ - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) { + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) { if(f->shared->fs_man[ptype]) { /* Test to see if we need to switch rings -- do so if required */ if(H5MF__fsm_type_is_self_referential(f->shared, ptype)) @@ -2149,7 +2149,7 @@ H5MF__close_shrink_eoa(H5F_t *f) } /* end if */ else { /* Check the last section of each free-space manager */ - for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) { if(f->shared->fs_man[type]) { /* Test to see if we need to switch rings -- do so if required */ if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type)) @@ -2245,7 +2245,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size) end_type = (H5F_mem_page_t)H5FD_MEM_NTYPES; } /* end else */ - for(tt = H5FD_MEM_SUPER; tt < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, tt)) + for(tt = H5FD_MEM_SUPER; tt < H5FD_MEM_NTYPES; tt++) if(HADDR_UNDEF == (fs_eoa[tt] = H5F_get_eoa(f, tt))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "driver get_eoa request failed") @@ -2260,7 +2260,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size) } /* end if */ /* Iterate over all the free space types that have managers and get each free list's space */ - for(type = start_type; type < end_type; H5_INC_ENUM(H5F_mem_page_t, type)) { + for(type = start_type; type < end_type; type++) { fs_started[type] = FALSE; /* Check if the free space for the file has been initialized */ @@ -2300,7 +2300,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size) } /* end for */ /* Close the free-space managers if they were opened earlier in this routine */ - for(type = start_type; type < end_type; H5_INC_ENUM(H5F_mem_page_t, type)) { + for(type = start_type; type < end_type; type++) { /* Test to see if we need to switch rings -- do so if required */ if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type)) needed_ring = H5AC_RING_MDFSM; @@ -2387,7 +2387,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t if(H5F_PAGED_AGGR(f)) /* set to the corresponding LARGE free-space manager */ end_type = (H5F_mem_page_t)(end_type + H5FD_MEM_NTYPES); else - H5_INC_ENUM(H5F_mem_page_t, end_type); + end_type++; } /* end else */ /* Set up user data for section iteration */ @@ -2403,7 +2403,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t curr_ring = H5AC_RING_RDFSM; /* Iterate over memory types, retrieving the number of sections of each type */ - for(ty = start_type; ty < end_type; H5_INC_ENUM(H5F_mem_page_t, ty)) { + for(ty = start_type; ty < end_type; ty++) { hbool_t fs_started = FALSE; /* The free-space manager is opened or not */ size_t nums = 0; /* The number of free-space sections */ @@ -2733,7 +2733,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) else /* no need for a second pass */ break; - for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5F_mem_t, mem_type)) { + for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; mem_type++) { H5MF__alloc_to_fs_type(f->shared, mem_type, alloc_size, &fsm_type); if(pass_count == 0) { /* this is the first pass */ @@ -2834,7 +2834,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) * those addresses are unknown. This is OK -- we will write the correct * values to the message at free space manager shutdown. */ - for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, fsm_type)) + for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; fsm_type++) fsinfo.fs_addr[fsm_type - 1] = HADDR_UNDEF; fsinfo.strategy = f->shared->fs_strategy; fsinfo.persist = f->shared->fs_persist; @@ -2867,7 +2867,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) */ /* Reinitialize fsm_visited */ - for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, fsm_type)) + for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; fsm_type++) fsm_visited[fsm_type] = FALSE; for(pass_count = 0; pass_count <= 1; pass_count++) { @@ -2878,7 +2878,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) else /* no need for a second pass */ break; - for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5F_mem_t, mem_type)) { + for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; mem_type++) { H5MF__alloc_to_fs_type(f->shared, mem_type, alloc_size, &fsm_type); if(pass_count == 0) { /* this is the first pass */ @@ -2975,7 +2975,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) } /* end for */ /* verify that all opened FSMs were closed */ - for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, fsm_type)) + for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; fsm_type++) HDassert(!fsm_opened[fsm_type]); /* Indicate that the FSM was settled successfully */ diff --git a/src/H5MFdbg.c b/src/H5MFdbg.c index e11476b..7bb77e8 100644 --- a/src/H5MFdbg.c +++ b/src/H5MFdbg.c @@ -169,7 +169,7 @@ H5MF_sects_debug(H5F_t *f, haddr_t fs_addr, FILE *stream, int indent, int fwidth HDassert(indent >= 0); HDassert(fwidth >= 0); - for(type = H5F_MEM_PAGE_DEFAULT; type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, type)) + for(type = H5F_MEM_PAGE_DEFAULT; type < H5F_MEM_PAGE_NTYPES; type++) if(H5F_addr_eq(f->shared->fs_addr[type], fs_addr)) { if(!f->shared->fs_man[type]) if(H5MF__open_fstype(f, type) < 0) @@ -243,7 +243,7 @@ HDfprintf(stderr, "%s: for type = H5FD_MEM_DEFAULT, eoa = %a\n", FUNC, eoa); if(H5F_PAGED_AGGR(f)) { /* File space paging */ H5F_mem_page_t ptype; /* Memory type for iteration -- page fs */ - for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) { + for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) { /* Print header for type */ HDfprintf(stream, "%*sFile Free Space Info for type = %u:\n", indent, "", (unsigned)ptype); @@ -289,7 +289,7 @@ HDfprintf(stderr, "%s: sda_addr = %a, sda_size = %Hu, end of sda = %a\n", FUNC, #endif /* H5MF_ALLOC_DEBUG */ /* Iterate over all the free space types that have managers and dump each free list's space */ - for(atype = H5FD_MEM_DEFAULT; atype < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, atype)) { + for(atype = H5FD_MEM_DEFAULT; atype < H5FD_MEM_NTYPES; atype++) { /* Print header for type */ HDfprintf(stream, "%*sFile Free Space Info for type = %u:\n", indent, "", (unsigned)atype); diff --git a/src/H5Mpublic.h b/src/H5Mpublic.h index 9cbdb32..524ab0f 100644 --- a/src/H5Mpublic.h +++ b/src/H5Mpublic.h @@ -40,7 +40,8 @@ #define H5VL_MAP_PUT 5 #define H5VL_MAP_GET 6 #define H5VL_MAP_SPECIFIC 7 -#define H5VL_MAP_CLOSE 8 +#define H5VL_MAP_OPTIONAL 8 +#define H5VL_MAP_CLOSE 9 /*******************/ diff --git a/src/H5Ofsinfo.c b/src/H5Ofsinfo.c index e5e6741..7e48b9e 100644 --- a/src/H5Ofsinfo.c +++ b/src/H5Ofsinfo.c @@ -112,7 +112,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, if(NULL == (fsinfo = H5FL_CALLOC(H5O_fsinfo_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") - for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++) fsinfo->fs_addr[ptype - 1] = HADDR_UNDEF; /* Version of message */ @@ -141,7 +141,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, fsinfo->threshold = threshold; if(HADDR_UNDEF == (fsinfo->eoa_pre_fsm_fsalloc = H5F_get_eoa(f, H5FD_MEM_DEFAULT)) ) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "unable to get file size") - for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) + for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++) H5F_addr_decode(f, &p, &(fsinfo->fs_addr[type-1])); break; @@ -181,7 +181,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, /* Decode addresses of free space managers, if persisting */ if(fsinfo->persist) { - for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++) H5F_addr_decode(f, &p, &(fsinfo->fs_addr[ptype - 1])); } /* end if */ @@ -235,7 +235,7 @@ H5O_fsinfo_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, c /* Store addresses of free-space managers, if persisting */ if(fsinfo->persist) { /* Addresses of free-space managers */ - for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++) H5F_addr_encode(f, &p, fsinfo->fs_addr[ptype - 1]); } /* end if */ @@ -480,7 +480,7 @@ H5O__fsinfo_debug(H5F_t H5_ATTR_UNUSED *f, const void *_mesg, FILE * stream, "eoa_pre_fsm_fsalloc:", fsinfo->eoa_pre_fsm_fsalloc); if(fsinfo->persist) { - for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) + for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++) HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, "Free space manager address:", fsinfo->fs_addr[ptype-1]); } /* end if */ diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 721ba89..b83e2cf 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -3324,19 +3324,19 @@ H5P_get_fill_value(H5P_genplist_t *plist, const H5T_t *type, void *value/*out*/) */ if(H5T_get_size(type) >= H5T_get_size(fill.type)) { buf = value; - if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_malloc(H5T_get_size(type)))) + if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_calloc(H5T_get_size(type)))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "memory allocation failed for type conversion") } /* end if */ else { - if(NULL == (buf = H5MM_malloc(H5T_get_size(fill.type)))) + if(NULL == (buf = H5MM_calloc(H5T_get_size(fill.type)))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "memory allocation failed for type conversion") - if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_malloc(H5T_get_size(fill.type)))) + if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_calloc(H5T_get_size(fill.type)))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "memory allocation failed for type conversion") } /* end else */ H5MM_memcpy(buf, fill.buf, H5T_get_size(fill.type)); /* Do the conversion */ - if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(type, H5T_COPY_TRANSIENT), FALSE)) < 0) + if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(type, H5T_COPY_ALL), FALSE)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "unable to copy/register datatype") if(H5T_convert(tpath, src_id, dst_id, (size_t)1, (size_t)0, (size_t)0, buf, bkg) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "datatype conversion failed") diff --git a/src/H5Shyper.c b/src/H5Shyper.c index ab06eff..1e1538e 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -4265,6 +4265,9 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) /* Decode version */ UINT32DECODE(pp, version); + if(version < H5S_HYPER_VERSION_1 || version > H5S_HYPER_VERSION_LATEST) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "bad version number for hyperslab selection") + if(version >= (uint32_t)H5S_HYPER_VERSION_2) { /* Decode flags */ flags = *(pp)++; @@ -11503,7 +11506,7 @@ H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, HDassert(src_intersect_space); HDassert(proj_space); - /* Assert that src_space and src_intersect_space have same extent and there + /* Assert that src_space and src_intersect_space have same rank and there * are no point selections */ HDassert(H5S_GET_EXTENT_NDIMS(src_space) == H5S_GET_EXTENT_NDIMS(src_intersect_space)); HDassert(H5S_GET_SELECT_NPOINTS(src_space) == H5S_GET_SELECT_NPOINTS(dst_space)); diff --git a/src/H5Spkg.h b/src/H5Spkg.h index ba60cbf..e139bce 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -41,9 +41,10 @@ #define H5S_SELECT_FLAG_BITS (H5S_HYPER_REGULAR) /* Versions for H5S_SEL_HYPER selection info */ -#define H5S_HYPER_VERSION_1 1 -#define H5S_HYPER_VERSION_2 2 -#define H5S_HYPER_VERSION_3 3 +#define H5S_HYPER_VERSION_1 1 +#define H5S_HYPER_VERSION_2 2 +#define H5S_HYPER_VERSION_3 3 +#define H5S_HYPER_VERSION_LATEST H5S_HYPER_VERSION_3 /* Versions for H5S_SEL_POINTS selection info */ #define H5S_POINT_VERSION_1 1 diff --git a/src/H5Sselect.c b/src/H5Sselect.c index 664f4b5..6c8b898 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -2615,6 +2615,7 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, HDassert(src_intersect_space); HDassert(new_space_ptr); HDassert(H5S_GET_SELECT_NPOINTS(src_space) == H5S_GET_SELECT_NPOINTS(dst_space)); + HDassert(H5S_GET_EXTENT_NDIMS(src_space) == H5S_GET_EXTENT_NDIMS(src_intersect_space)); /* Create new space, using dst extent. Start with "all" selection. */ if(NULL == (new_space = H5S_create(H5S_SIMPLE))) @@ -2639,97 +2640,134 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") } /* end if */ else { - /* If the source intersect space is a point selection, convert it to a - * hyperslab (discarding ordering). We can get away with this because - * the order does not matter for the source intersect space */ - /* Maybe we should just leave it as a point selection for the point by - * point algorithm? The search through the selection in - * H5S_SELECT_INTERSECT_BLOCK will likely be O(N) either way. -NAF */ - if(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_POINTS) { - H5S_pnt_node_t *curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; - - /* Create dataspace and copy extent */ - if(NULL == (tmp_src_intersect_space = H5S_create(H5S_SIMPLE))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create temporary source intersect dataspace") - if(H5S__extent_copy_real(&tmp_src_intersect_space->extent, &src_intersect_space->extent, FALSE) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "unable to copy source intersect space extent") - - /* Iterate over points */ - for(curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; curr_pnt; curr_pnt = curr_pnt->next) - /* Add point to hyperslab selection */ - if(H5S_hyper_add_span_element(tmp_src_intersect_space, src_intersect_space->extent.rank, curr_pnt->pnt) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to temporary dataspace selection") - - /* Redirect local src_intersect_space pointer (will not affect - * calling function) */ - src_intersect_space = tmp_src_intersect_space; - } /* end for */ - - /* By this point, src_intersect_space must be a hyperslab selection */ - HDassert(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_HYPERSLABS); - - /* If either the source space or the destination space is a point - * selection, iterate element by element */ - if((H5S_GET_SELECT_TYPE(src_space) == H5S_SEL_POINTS) - || (H5S_GET_SELECT_TYPE(dst_space) == H5S_SEL_POINTS)) { - hsize_t coords[H5S_MAX_RANK]; + /* Handle scalar dataspaces. It should not be possible for the source + * intersect space or the source space to be scalar since scalar spaces + * only support all or none selections, and both of those cases are + * covered above, and the source intersect space must have the same + * rank, so it also cannot be scalar, as scalar dataspaces have a rank + * of 0. */ + HDassert(H5S_GET_EXTENT_TYPE(src_space) != H5S_SCALAR); + HDassert(H5S_GET_EXTENT_TYPE(src_intersect_space) != H5S_SCALAR); + + /* Check for scalar dst_space. In this case we simply check if the + * (single) point selected in src_space intersects src_intersect_space, + * if so select all in new_space, otherwise select none. */ + if(H5S_GET_EXTENT_TYPE(dst_space) == H5S_SCALAR) { + hsize_t coords_start[H5S_MAX_RANK]; + hsize_t coords_end[H5S_MAX_RANK]; htri_t intersect; - /* Start with "none" selection */ - if(H5S_select_none(new_space) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") + /* Get source space bounds. Should be a single point. */ + if(H5S_SELECT_BOUNDS(src_space, coords_start, coords_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source space bounds") + HDassert(0 == HDmemcmp(coords_start, coords_end, H5S_GET_EXTENT_NDIMS(src_space) * sizeof(coords_start[0]))); - /* Initialize iterators */ - if(H5S_select_iter_init(&ss_iter, src_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize source space selection iterator") - ss_iter_init = TRUE; - if(H5S_select_iter_init(&ds_iter, dst_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize destination space selection iterator") - ds_iter_init = TRUE; - - /* Iterate over points */ - do { - HDassert(ss_iter.elmt_left > 0); - HDassert(ss_iter.elmt_left > 0); - - /* Get SS coords */ - if(H5S_SELECT_ITER_COORDS(&ss_iter, coords) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source selection coordinates") - - /* Check for intersection */ - if((intersect = H5S_SELECT_INTERSECT_BLOCK(src_intersect_space, coords, coords)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "can't check for intersection") - - /* Add point if it intersects */ - if(intersect) { - /* Get DS coords */ - if(H5S_SELECT_ITER_COORDS(&ds_iter, coords) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get destination selection coordinates") - - /* Add point to new_space */ - if(H5S_select_elements(new_space, H5S_SELECT_APPEND, 1, coords) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to new selection") - } /* end if */ + /* Check for intersection */ + if((intersect = H5S_SELECT_INTERSECT_BLOCK(src_intersect_space, coords_start, coords_end)) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "can't check for intersection") - /* Advance iterators */ - if(H5S_SELECT_ITER_NEXT(&ss_iter, 1) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne source selection iterator") - ss_iter.elmt_left--; - if(H5S_SELECT_ITER_NEXT(&ds_iter, 1) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne destination selection iterator") - ds_iter.elmt_left--; - } while(ss_iter.elmt_left > 0); - HDassert(H5S_SELECT_ITER_NELMTS(&ds_iter) == 0); + /* Select all or none as appropriate */ + if(intersect) { + if(H5S_select_all(new_space, TRUE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't select all") + } /* end if */ + else + if(H5S_select_none(new_space) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") } /* end if */ else { - HDassert(H5S_GET_SELECT_TYPE(src_space) != H5S_SEL_NONE); - HDassert(H5S_GET_SELECT_TYPE(dst_space) != H5S_SEL_NONE); - - /* Source and destination selections are all or hyperslab, - * intersecting selection is hyperslab. Call the hyperslab routine - * to project to another hyperslab selection. */ - if(H5S__hyper_project_intersection(src_space, dst_space, src_intersect_space, new_space, share_selection) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab onto destination selection") + /* If the source intersect space is a point selection, convert it to a + * hyperslab (discarding ordering). We can get away with this because + * the order does not matter for the source intersect space */ + /* Maybe we should just leave it as a point selection for the point by + * point algorithm? The search through the selection in + * H5S_SELECT_INTERSECT_BLOCK will likely be O(N) either way. -NAF */ + if(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_POINTS) { + H5S_pnt_node_t *curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; + + /* Create dataspace and copy extent */ + if(NULL == (tmp_src_intersect_space = H5S_create(H5S_SIMPLE))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create temporary source intersect dataspace") + if(H5S__extent_copy_real(&tmp_src_intersect_space->extent, &src_intersect_space->extent, FALSE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "unable to copy source intersect space extent") + + /* Iterate over points */ + for(curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; curr_pnt; curr_pnt = curr_pnt->next) + /* Add point to hyperslab selection */ + if(H5S_hyper_add_span_element(tmp_src_intersect_space, src_intersect_space->extent.rank, curr_pnt->pnt) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to temporary dataspace selection") + + /* Redirect local src_intersect_space pointer (will not affect + * calling function) */ + src_intersect_space = tmp_src_intersect_space; + } /* end for */ + + /* By this point, src_intersect_space must be a hyperslab selection */ + HDassert(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_HYPERSLABS); + + /* If either the source space or the destination space is a point + * selection, iterate element by element */ + if((H5S_GET_SELECT_TYPE(src_space) == H5S_SEL_POINTS) + || (H5S_GET_SELECT_TYPE(dst_space) == H5S_SEL_POINTS)) { + hsize_t coords[H5S_MAX_RANK]; + htri_t intersect; + + /* Start with "none" selection */ + if(H5S_select_none(new_space) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") + + /* Initialize iterators */ + if(H5S_select_iter_init(&ss_iter, src_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize source space selection iterator") + ss_iter_init = TRUE; + if(H5S_select_iter_init(&ds_iter, dst_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize destination space selection iterator") + ds_iter_init = TRUE; + + /* Iterate over points */ + do { + HDassert(ss_iter.elmt_left > 0); + HDassert(ss_iter.elmt_left > 0); + + /* Get SS coords */ + if(H5S_SELECT_ITER_COORDS(&ss_iter, coords) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source selection coordinates") + + /* Check for intersection */ + if((intersect = H5S_SELECT_INTERSECT_BLOCK(src_intersect_space, coords, coords)) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "can't check for intersection") + + /* Add point if it intersects */ + if(intersect) { + /* Get DS coords */ + if(H5S_SELECT_ITER_COORDS(&ds_iter, coords) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get destination selection coordinates") + + /* Add point to new_space */ + if(H5S_select_elements(new_space, H5S_SELECT_APPEND, 1, coords) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to new selection") + } /* end if */ + + /* Advance iterators */ + if(H5S_SELECT_ITER_NEXT(&ss_iter, 1) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne source selection iterator") + ss_iter.elmt_left--; + if(H5S_SELECT_ITER_NEXT(&ds_iter, 1) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne destination selection iterator") + ds_iter.elmt_left--; + } while(ss_iter.elmt_left > 0); + HDassert(H5S_SELECT_ITER_NELMTS(&ds_iter) == 0); + } /* end if */ + else { + HDassert(H5S_GET_SELECT_TYPE(src_space) != H5S_SEL_NONE); + HDassert(H5S_GET_SELECT_TYPE(dst_space) != H5S_SEL_NONE); + + /* Source and destination selections are all or hyperslab, + * intersecting selection is hyperslab. Call the hyperslab routine + * to project to another hyperslab selection. */ + if(H5S__hyper_project_intersection(src_space, dst_space, src_intersect_space, new_space, share_selection) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab onto destination selection") + } /* end else */ } /* end else */ } /* end else */ @@ -2804,10 +2842,15 @@ H5Sselect_project_intersection(hid_t src_space_id, hid_t dst_space_id, if(NULL == (src_intersect_space = (H5S_t *)H5I_object_verify(src_intersect_space_id, H5I_DATASPACE))) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "not a dataspace") - /* Check numbbers of points selected matches in source and destination */ + /* Check numbers of points selected matches in source and destination */ if(H5S_GET_SELECT_NPOINTS(src_space) != H5S_GET_SELECT_NPOINTS(dst_space)) HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "number of points selected in source space does not match that in destination space") + /* Check numbers of dimensions matches in source and source intersect spaces + */ + if(H5S_GET_EXTENT_NDIMS(src_space) != H5S_GET_EXTENT_NDIMS(src_intersect_space)) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "rank of source space does not match rank of source intersect space") + /* Perform operation */ if(H5S_select_project_intersection(src_space, dst_space, src_intersect_space, &proj_space, FALSE) < 0) @@ -254,6 +254,7 @@ dt->shared->u.atomic.u.r.rtype = H5R_OBJECT2; \ dt->shared->u.atomic.u.r.opaque = TRUE; \ dt->shared->u.atomic.u.r.version = H5R_ENCODE_VERSION; \ + dt->shared->version = H5O_DTYPE_VERSION_4; \ } /* Define the code templates for the "SIZE_TMPL" in the H5T_INIT_TYPE macro */ diff --git a/src/H5private.h b/src/H5private.h index 2b35bd4..c39c946 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -521,13 +521,6 @@ # define H5_POSIX_CREATE_MODE_RW 0666 #endif -/* - * A macro to portably increment enumerated types. - */ -#ifndef H5_INC_ENUM -# define H5_INC_ENUM(TYPE,VAR) (VAR)=((TYPE)((VAR)+1)) -#endif - /* Represents an empty asynchronous request handle. * Used in the VOL code. */ diff --git a/src/hdf5-lin.lnt b/src/hdf5-lin.lnt index da20937..23ceed2 100644 --- a/src/hdf5-lin.lnt +++ b/src/hdf5-lin.lnt @@ -13,9 +13,6 @@ // Turn off warnings about not using the return value from these functions: -emacro(534,HDfflush,HDgetrusage,HDgettimeofday,HDputc) -// Turn off warnings about converting an enum to an int --emacro(641,H5_INC_ENUM,H5_DEC_ENUM) - // Suppress message about "Expression with side effects passed to repeated parameter 1 in macro 'assert'" -esym(666,assert) diff --git a/src/hdf5.lnt b/src/hdf5.lnt index 642698a..995e3f6 100644 --- a/src/hdf5.lnt +++ b/src/hdf5.lnt @@ -30,11 +30,6 @@ -esym(534, H5UC_decr) -esym(534, H5VM_array_fill) - -// Turn off warnings about "Expression-like macro not parenthesized" for -// enumerated type increment & decrement macros: --esym(773, H5_INC_ENUM, H5_DEC_ENUM) - /* So far, the following files have been linted with these options: H5.c H5A.c @@ -60,7 +55,7 @@ H5FO.c H5Tcommit.c - H5Tcompound.c + H5Tcompound.c H5Tcset.c H5Tenum.c |