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-rw-r--r--src/H5Smpio.c504
1 files changed, 458 insertions, 46 deletions
diff --git a/src/H5Smpio.c b/src/H5Smpio.c
index c24c455..7319a80 100644
--- a/src/H5Smpio.c
+++ b/src/H5Smpio.c
@@ -33,7 +33,7 @@
#include "H5Oprivate.h" /* Object headers */
#include "H5Pprivate.h" /* Property lists */
#include "H5Spkg.h" /* Dataspaces */
-#include "H5VMprivate.h" /* Vector and array functions */
+#include "H5VMprivate.h" /* Vector and array functions */
#ifdef H5_HAVE_PARALLEL
@@ -55,9 +55,42 @@ static herr_t H5S_mpio_span_hyper_type(const H5S_t *space, size_t elmt_size,
MPI_Datatype *new_type, int *count, hbool_t *is_derived_type);
static herr_t H5S_obtain_datatype(const hsize_t down[], H5S_hyper_span_t* span,
const MPI_Datatype *elmt_type, MPI_Datatype *span_type, size_t elmt_size);
+static herr_t H5S_mpio_create_large_type (hsize_t, MPI_Aint, MPI_Datatype , MPI_Datatype *);
+
#define H5S_MPIO_INITIAL_ALLOC_COUNT 256
+#define TWO_GIG_LIMIT 2147483648
+
+#ifndef H5S_MAX_MPI_COUNT
+#define H5S_MAX_MPI_COUNT 536870911 /* (2^29)-1 */
+#endif
+
+static hsize_t bigio_count = H5S_MAX_MPI_COUNT;
+
+/*-------------------------------------------------------------------------
+ * Function: H5S_mpio_set_bigio_count
+ *
+ * Purpose: Allow us to programatically change the switch point
+ * when we utilize derived datatypes. This is of
+ * particular interest for allowing nightly testing
+ *
+ * Return: the current/previous value of bigio_count.
+ *
+ * Programmer: Richard Warren, March 10, 2017
+ *
+ *-------------------------------------------------------------------------
+ */
+hsize_t
+H5S_mpio_set_bigio_count(hsize_t new_count)
+{
+ hsize_t orig_count = bigio_count;
+ if ((new_count > 0) && (new_count < TWO_GIG_LIMIT)) {
+ bigio_count = new_count;
+ }
+ return orig_count;
+}
+
/*-------------------------------------------------------------------------
* Function: H5S_mpio_all_type
@@ -72,6 +105,11 @@ static herr_t H5S_obtain_datatype(const hsize_t down[], H5S_hyper_span_t* span,
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
+ * Modifications:
+ * Mohamad Chaarawi
+ * Adding support for large datatypes (beyond the limit of a
+ * 32 bit integer.
+ *
*
*-------------------------------------------------------------------------
*/
@@ -95,11 +133,22 @@ H5S_mpio_all_type(const H5S_t *space, size_t elmt_size,
H5_CHECKED_ASSIGN(nelmts, hsize_t, snelmts, hssize_t);
total_bytes = (hsize_t)elmt_size * nelmts;
-
- /* fill in the return values */
- *new_type = MPI_BYTE;
- H5_CHECKED_ASSIGN(*count, int, total_bytes, hsize_t);
- *is_derived_type = FALSE;
+ /* Verify that the size can be expressed as a 32 bit integer */
+ if(bigio_count >= total_bytes) {
+ /* fill in the return values */
+ *new_type = MPI_BYTE;
+ H5_CHECKED_ASSIGN(*count, int, total_bytes, hsize_t);
+ *is_derived_type = FALSE;
+ }
+ else {
+ /* Create a LARGE derived datatype for this transfer */
+ if (H5S_mpio_create_large_type (total_bytes, 0, MPI_BYTE, new_type) < 0) {
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,
+ "couldn't create a large datatype from the all selection")
+ }
+ *count = 1;
+ *is_derived_type = TRUE;
+ }
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -167,27 +216,103 @@ H5S_mpio_create_point_datatype (size_t elmt_size, hsize_t num_points,
HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
elmt_type_created = TRUE;
+ /* Check whether standard or BIGIO processing will be employeed */
+ if(bigio_count >= num_points) {
#if MPI_VERSION >= 3
- /* Create an MPI datatype for the whole point selection */
- if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block((int)num_points, 1, disp, elmt_type, new_type)))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_indexed_block failed", mpi_code)
+ /* Create an MPI datatype for the whole point selection */
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block((int)num_points, 1, disp, elmt_type, new_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_indexed_block failed", mpi_code)
#else
- /* Allocate block sizes for MPI datatype call */
- if(NULL == (blocks = (int *)H5MM_malloc(sizeof(int) * num_points)))
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate array of blocks")
+ /* Allocate block sizes for MPI datatype call */
+ if(NULL == (blocks = (int *)H5MM_malloc(sizeof(int) * num_points)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate array of blocks")
- for(u = 0; u < num_points; u++)
- blocks[u] = 1;
+ for(u = 0; u < num_points; u++)
+ blocks[u] = 1;
- /* Create an MPI datatype for the whole point selection */
- if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)num_points, blocks, disp, elmt_type, new_type)))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_indexed_block failed", mpi_code)
+ /* Create an MPI datatype for the whole point selection */
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)num_points, blocks, disp, elmt_type, new_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_indexed_block failed", mpi_code)
#endif
- /* Commit MPI datatype for later use */
- if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(new_type)))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code)
+ /* Commit MPI datatype for later use */
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(new_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code)
+ }
+ else {
+ /* use LARGE_DATATYPE::
+ * We'll create an hindexed_block type for every 2G point count and then combine
+ * those and any remaining points into a single large datatype.
+ */
+ int total_types, i;
+ int remaining_points;
+ int num_big_types;
+ hsize_t leftover;
+
+ int *inner_blocks;
+ MPI_Aint *inner_disps;
+ MPI_Datatype *inner_types = NULL;
+
+ /* Calculate how many Big MPI datatypes are needed to represent the buffer */
+ num_big_types = (int)(num_points/bigio_count);
+
+ leftover = (hsize_t)num_points - (hsize_t)num_big_types * (hsize_t)bigio_count;
+ H5_CHECKED_ASSIGN(remaining_points, int, leftover, hsize_t);
+
+ total_types = (int)(remaining_points) ? (num_big_types + 1) : num_big_types;
+
+ /* Allocate array if MPI derived types needed */
+ if(NULL == (inner_types = (MPI_Datatype *)H5MM_malloc((sizeof(MPI_Datatype) * (size_t)total_types))))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate array of blocks")
+
+ if(NULL == (inner_blocks = (int *)H5MM_malloc(sizeof(int) * (size_t)total_types)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate array of blocks")
+
+ if(NULL == (inner_disps = (MPI_Aint *)H5MM_malloc(sizeof(MPI_Aint) * (size_t)total_types)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate array of blocks")
+
+ for(i=0 ; i<num_big_types ; i++) {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block(bigio_count,
+ 1,
+ &disp[i*bigio_count],
+ elmt_type,
+ &inner_types[i]))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code);
+ }
+ inner_blocks[i] = 1;
+ inner_disps[i] = 0;
+ }
+
+ if(remaining_points) {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block(remaining_points,
+ 1,
+ &disp[num_big_types*bigio_count],
+ elmt_type,
+ &inner_types[num_big_types]))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code);
+ }
+ inner_blocks[num_big_types] = 1;
+ inner_disps[num_big_types] = 0;
+ }
+
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_struct(total_types,
+ inner_blocks,
+ inner_disps,
+ inner_types,
+ new_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct", mpi_code);
+ }
+ for(i=0 ; i<total_types ; i++)
+ MPI_Type_free(&inner_types[i]);
+
+ H5MM_free(inner_types);
+ H5MM_free(inner_blocks);
+ H5MM_free(inner_disps);
+ /* Commit MPI datatype for later use */
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(new_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code)
+ }
done:
if(elmt_type_created)
MPI_Type_free(&elmt_type);
@@ -481,7 +606,10 @@ done:
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
- *
+ * Modifications:
+ * Mohamad Chaarawi
+ * Adding support for large datatypes (beyond the limit of a
+ * 32 bit integer.
*-------------------------------------------------------------------------
*/
static herr_t
@@ -636,8 +764,25 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size,
HDfprintf(H5DEBUG(S), "d[%d].xtent=%Hu \n", i, d[i].xtent);
}
#endif
- if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &inner_type)))
+
+ /* LARGE_DATATYPE::
+ * Check if the number of elements to form the inner type fits into a 32 bit integer.
+ * If yes then just create the innertype with MPI_Type_contiguous.
+ * Otherwise create a compound datatype by iterating as many times as needed
+ * for the innertype to be created.
+ */
+ if(bigio_count >= elmt_size) {
+ /* Use a single MPI datatype that has a 32 bit size */
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &inner_type)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ else {
+ /* Create the compound datatype for this operation (> 2GB) */
+ if (H5S_mpio_create_large_type (elmt_size, 0, MPI_BYTE, &inner_type) < 0) {
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,
+ "couldn't ccreate a large inner datatype in hyper selection")
+ }
+ }
/*******************************************************
* Construct the type by walking the hyperslab dims
@@ -645,30 +790,93 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size,
*******************************************************/
for(i = ((int)rank) - 1; i >= 0; --i) {
#ifdef H5S_DEBUG
- if(H5DEBUG(S))
- HDfprintf(H5DEBUG(S), "%s: Dimension i=%d \n"
- "start=%Hd count=%Hu block=%Hu stride=%Hu, xtent=%Hu max_xtent=%d\n",
- FUNC, i, d[i].start, d[i].count, d[i].block, d[i].strid, d[i].xtent, max_xtent[i]);
+ if(H5DEBUG(S))
+ HDfprintf(H5DEBUG(S), "%s: Dimension i=%d \n"
+ "start=%Hd count=%Hu block=%Hu stride=%Hu, xtent=%Hu max_xtent=%d\n",
+ FUNC, i, d[i].start, d[i].count, d[i].block, d[i].strid, d[i].xtent, max_xtent[i]);
#endif
#ifdef H5S_DEBUG
- if(H5DEBUG(S))
- HDfprintf(H5DEBUG(S), "%s: i=%d Making vector-type \n", FUNC,i);
+ if(H5DEBUG(S))
+ HDfprintf(H5DEBUG(S), "%s: i=%d Making vector-type \n", FUNC,i);
#endif
/****************************************
* Build vector type of the selection.
****************************************/
- mpi_code = MPI_Type_vector((int)(d[i].count), /* count */
- (int)(d[i].block), /* blocklength */
- (int)(d[i].strid), /* stride */
- inner_type, /* old type */
- &outer_type); /* new type */
+ if (bigio_count >= d[i].count &&
+ bigio_count >= d[i].block &&
+ bigio_count >= d[i].strid) {
+
+ /* All the parameters fit into 32 bit integers so create the vector type normally */
+ mpi_code = MPI_Type_vector((int)(d[i].count), /* count */
+ (int)(d[i].block), /* blocklength */
+ (int)(d[i].strid), /* stride */
+ inner_type, /* old type */
+ &outer_type); /* new type */
+
+ MPI_Type_free(&inner_type);
+ if(mpi_code != MPI_SUCCESS)
+ HMPI_GOTO_ERROR(FAIL, "couldn't create MPI vector type", mpi_code)
+ }
+ else {
+ /* Things get a bit more complicated and require LARGE_DATATYPE processing
+ * There are two MPI datatypes that need to be created:
+ * 1) an internal contiguous block; and
+ * 2) a collection of elements where an element is a contiguous block(1).
+ * Remember that the input arguments to the MPI-IO functions use integer
+ * values to represent element counts. We ARE allowed however, in the
+ * more recent MPI implementations to use constructed datatypes whereby
+ * the total number of bytes in a transfer could be :
+ * (2GB-1)number_of_blocks * the_datatype_extent.
+ */
+
+ MPI_Aint stride_in_bytes, inner_extent;
+ MPI_Datatype block_type;
+
+ /* create a contiguous datatype inner_type x number of BLOCKS.
+ * Again we need to check that the number of BLOCKS can fit into
+ * a 32 bit integer */
+ if (bigio_count < d[i].block) {
+ if (H5S_mpio_create_large_type(d[i].block, 0, inner_type,
+ &block_type) < 0) {
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,
+ "couldn't ccreate a large block datatype in hyper selection")
+ }
+ }
+ else {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)d[i].block,
+ inner_type,
+ &block_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
- MPI_Type_free(&inner_type);
- if(mpi_code != MPI_SUCCESS)
- HMPI_GOTO_ERROR(FAIL, "couldn't create MPI vector type", mpi_code)
+ MPI_Type_extent (inner_type, &inner_extent);
+ stride_in_bytes = inner_extent * (MPI_Aint)d[i].strid;
- /****************************************
+ /* If the element count is larger than what a 32 bit integer can hold,
+ * we call the large type creation function to handle that
+ */
+ if (bigio_count < d[i].count) {
+ if (H5S_mpio_create_large_type (d[i].count, stride_in_bytes, block_type,
+ &outer_type) < 0) {
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,
+ "couldn't create a large outer datatype in hyper selection")
+ }
+ }
+ /* otherwise a regular create_hvector will do */
+ else {
+ mpi_code = MPI_Type_create_hvector((int)d[i].count, /* count */
+ 1, /* blocklength */
+ stride_in_bytes, /* stride in bytes*/
+ block_type, /* old type */
+ &outer_type); /* new type */
+ if(MPI_SUCCESS != mpi_code)
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ MPI_Type_free(&block_type);
+ MPI_Type_free(&inner_type);
+ }
+ /****************************************
* Then build the dimension type as (start, vector type, xtent).
****************************************/
/* calculate start and extent values of this dimension */
@@ -752,6 +960,10 @@ done:
*
* Programmer: kyang
*
+ * Modifications:
+ * Mohamad Chaarawi
+ * Adding support for large datatypes (beyond the limit of a
+ * 32 bit integer.
*-------------------------------------------------------------------------
*/
static herr_t
@@ -774,8 +986,17 @@ H5S_mpio_span_hyper_type(const H5S_t *space, size_t elmt_size,
HDassert(space->select.sel_info.hslab->span_lst->head);
/* Create the base type for an element */
- if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &elmt_type)))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ if (bigio_count >= elmt_size) {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &elmt_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ }
+ else {
+ if (H5S_mpio_create_large_type (elmt_size, 0, MPI_BYTE, &elmt_type) < 0) {
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,
+ "couldn't create a large element datatype in span_hyper selection")
+ }
+ }
elmt_type_is_derived = TRUE;
/* Compute 'down' sizes for each dimension */
@@ -821,14 +1042,15 @@ static herr_t
H5S_obtain_datatype(const hsize_t *down, H5S_hyper_span_t *span,
const MPI_Datatype *elmt_type, MPI_Datatype *span_type, size_t elmt_size)
{
- size_t alloc_count; /* Number of span tree nodes allocated at this level */
- size_t outercount; /* Number of span tree nodes at this level */
+ size_t alloc_count = 0; /* Number of span tree nodes allocated at this level */
+ size_t outercount = 0; /* Number of span tree nodes at this level */
MPI_Datatype *inner_type = NULL;
hbool_t inner_types_freed = FALSE; /* Whether the inner_type MPI datatypes have been freed */
hbool_t span_type_valid = FALSE; /* Whether the span_type MPI datatypes is valid */
+ hbool_t large_block = FALSE; /* Wether the block length is larger than 32 bit integer */
int *blocklen = NULL;
MPI_Aint *disp = NULL;
- H5S_hyper_span_t *tspan; /* Temporary pointer to span tree node */
+ H5S_hyper_span_t *tspan = NULL; /* Temporary pointer to span tree node */
int mpi_code; /* MPI return status code */
herr_t ret_value = SUCCEED; /* Return value */
@@ -870,14 +1092,70 @@ H5S_obtain_datatype(const hsize_t *down, H5S_hyper_span_t *span,
disp[outercount] = (MPI_Aint)elmt_size * tspan->low;
H5_CHECK_OVERFLOW(tspan->nelem, hsize_t, int)
blocklen[outercount] = (int)tspan->nelem;
-
tspan = tspan->next;
+
+ if (bigio_count < blocklen[outercount]) {
+ large_block = TRUE; /* at least one block type is large, so set this flag to true */
+ }
+
outercount++;
} /* end while */
- if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)outercount, blocklen, disp, *elmt_type, span_type)))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed failed", mpi_code)
- span_type_valid = TRUE;
+ /* Everything fits into integers, so cast them and use hindexed */
+ if (bigio_count >= outercount && large_block == FALSE) {
+
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)outercount, blocklen, disp, *elmt_type, span_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed failed", mpi_code)
+ span_type_valid = TRUE;
+ }
+ else { /* LARGE_DATATYPE:: Something doesn't fit into a 32 bit integer */
+ size_t i;
+
+ for (i=0 ; i<outercount ; i++) {
+ MPI_Datatype temp_type = MPI_DATATYPE_NULL, outer_type = MPI_DATATYPE_NULL;
+ /* create the block type from elmt_type while checking the 32 bit int limit */
+ if (blocklen[i] > bigio_count) {
+ if (H5S_mpio_create_large_type (blocklen[i], 0, *elmt_type, &temp_type) < 0) {
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,
+ "couldn't create a large element datatype in span_hyper selection")
+ }
+ }
+ else {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)blocklen[i],
+ *elmt_type,
+ &temp_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+
+ /* combine the current datatype that is created with this current block type */
+ if (0 == i) { /* first iteration, there is no combined datatype yet */
+ *span_type = temp_type;
+ }
+ else {
+ int bl[2] = {1,1};
+ MPI_Aint ds[2] = {disp[i-1],disp[i]};
+ MPI_Datatype dt[2] = {*span_type, temp_type};
+
+ if (MPI_SUCCESS != (mpi_code = MPI_Type_create_struct (2, /* count */
+ bl, /* blocklength */
+ ds, /* stride in bytes*/
+ dt, /* old type */
+ &outer_type))){ /* new type */
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct failed", mpi_code)
+ }
+ *span_type = outer_type;
+ }
+
+ if (outer_type != MPI_DATATYPE_NULL)
+ MPI_Type_free(&outer_type);
+ /* temp_type shouldn't be freed here...
+ * Note that we have simply copied it above (not MPI_Type_dup)
+ * into the 'span_type' argument of the caller.
+ * The caller needs to deal with it there!
+ */
+ }
+ } /* end (LARGE_DATATYPE::) */
+
} /* end if */
else {
size_t u; /* Local index variable */
@@ -1091,5 +1369,139 @@ H5S_mpio_space_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_type
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_mpio_space_type() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5S_mpio_create_large_type
+ *
+ * Purpose: Create a large datatype of size larger than what a 32 bit integer
+ * can hold.
+ *
+ * Return: non-negative on success, negative on failure.
+ *
+ * *new_type the new datatype created
+ *
+ * Programmer: Mohamad Chaarawi
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t H5S_mpio_create_large_type (hsize_t num_elements,
+ MPI_Aint stride_bytes,
+ MPI_Datatype old_type,
+ MPI_Datatype *new_type)
+{
+ int num_big_types; /* num times the 2G datatype will be repeated */
+ int remaining_bytes; /* the number of bytes left that can be held in an int value */
+ hsize_t leftover;
+ int block_len[2];
+ int mpi_code; /* MPI return code */
+ MPI_Datatype inner_type, outer_type, leftover_type, type[2];
+ MPI_Aint disp[2], old_extent;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+ /* Calculate how many Big MPI datatypes are needed to represent the buffer */
+ num_big_types = (int)(num_elements/bigio_count);
+ leftover = num_elements - num_big_types * (hsize_t)bigio_count;
+ H5_CHECKED_ASSIGN(remaining_bytes, int, leftover, hsize_t);
+
+ /* Create a contiguous datatype of size equal to the largest
+ * number that a 32 bit integer can hold x size of old type.
+ * If the displacement is 0, then the type is contiguous, otherwise
+ * use type_hvector to create the type with the displacement provided
+ */
+ if (0 == stride_bytes) {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous(bigio_count,
+ old_type,
+ &inner_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ }
+ else {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector (bigio_count,
+ 1,
+ stride_bytes,
+ old_type,
+ &inner_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ }
+
+ /* Create a contiguous datatype of the buffer (minus the remaining < 2GB part)
+ * If a stride is present, use hvector type
+ */
+ if (0 == stride_bytes) {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous(num_big_types,
+ inner_type,
+ &outer_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ }
+ else {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector (num_big_types,
+ 1,
+ stride_bytes,
+ inner_type,
+ &outer_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ }
+
+ MPI_Type_free(&inner_type);
+
+ /* If there is a remaining part create a contiguous/vector datatype and then
+ * use a struct datatype to encapsulate everything.
+ */
+ if(remaining_bytes) {
+ if (stride_bytes == 0) {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous (remaining_bytes,
+ old_type,
+ &leftover_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ }
+ else {
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector
+ ((int)(num_elements - (hsize_t)num_big_types*bigio_count),
+ 1,
+ stride_bytes,
+ old_type,
+ &leftover_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+ }
+
+ MPI_Type_extent (old_type, &old_extent);
+
+ /* Set up the arguments for MPI_Type_struct constructor */
+ type[0] = outer_type;
+ type[1] = leftover_type;
+ block_len[0] = 1;
+ block_len[1] = 1;
+ disp[0] = 0;
+ disp[1] = (old_extent+stride_bytes)*num_big_types*(MPI_Aint)bigio_count;
+
+ if(MPI_SUCCESS != (mpi_code =
+ MPI_Type_create_struct(2, block_len, disp, type, new_type))) {
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
+ }
+
+ MPI_Type_free(&outer_type);
+ MPI_Type_free(&leftover_type);
+ }
+ else {
+ /* There are no remaining bytes so just set the new type to
+ * the outer type created */
+ *new_type = outer_type;
+ }
+
+ if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(new_type)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code)
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_mpio_create_large_type */
+
#endif /* H5_HAVE_PARALLEL */