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Diffstat (limited to 'test/API/tvltypes.c')
| -rw-r--r-- | test/API/tvltypes.c | 3258 |
1 files changed, 0 insertions, 3258 deletions
diff --git a/test/API/tvltypes.c b/test/API/tvltypes.c deleted file mode 100644 index 9e6027c..0000000 --- a/test/API/tvltypes.c +++ /dev/null @@ -1,3258 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://www.hdfgroup.org/licenses. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/*********************************************************** - * - * Test program: tvltypes - * - * Test the Variable-Length Datatype functionality - * - *************************************************************/ - -#include "testhdf5.h" - -/* #include "H5Dprivate.h" */ - -#define FILENAME "tvltypes.h5" - -/* 1-D dataset with fixed dimensions */ -#define SPACE1_RANK 1 -#define SPACE1_DIM1 4 - -/* 1-D dataset with fixed dimensions */ -#define SPACE3_RANK 1 -#define SPACE3_DIM1 128 -#define L1_INCM 16 -#define L2_INCM 8 -#define L3_INCM 3 - -/* Default temporary buffer size - Pulled from H5Dprivate.h */ -#define H5D_TEMP_BUF_SIZE (1024 * 1024) - -/* 1-D dataset with fixed dimensions */ -#define SPACE4_RANK 1 -#define SPACE4_DIM_SMALL 128 -#define SPACE4_DIM_LARGE (H5D_TEMP_BUF_SIZE / 64) - -void *test_vltypes_alloc_custom(size_t size, void *info); -void test_vltypes_free_custom(void *mem, void *info); - -/**************************************************************** -** -** test_vltypes_alloc_custom(): Test VL datatype custom memory -** allocation routines. This routine just uses malloc to -** allocate the memory and increments the amount of memory -** allocated. -** -****************************************************************/ -void * -test_vltypes_alloc_custom(size_t size, void *mem_used) -{ - void *ret_value; /* Pointer to return */ - const size_t extra = MAX(sizeof(void *), sizeof(size_t)); /* Extra space needed */ - /* (This weird contortion is required on the - * DEC Alpha to keep the alignment correct - QAK) - */ - - if ((ret_value = malloc(extra + size)) != NULL) { - *(size_t *)ret_value = size; - *(size_t *)mem_used += size; - } /* end if */ - - ret_value = ((unsigned char *)ret_value) + extra; - - return (ret_value); -} - -/**************************************************************** -** -** test_vltypes_free_custom(): Test VL datatype custom memory -** allocation routines. This routine just uses free to -** release the memory and decrements the amount of memory -** allocated. -** -****************************************************************/ -void -test_vltypes_free_custom(void *_mem, void *mem_used) -{ - if (_mem) { - const size_t extra = MAX(sizeof(void *), sizeof(size_t)); /* Extra space needed */ - /* (This weird contortion is required - * on the DEC Alpha to keep the - * alignment correct - QAK) - */ - unsigned char *mem = ((unsigned char *)_mem) - extra; /* Pointer to actual block allocated */ - - *(size_t *)mem_used -= *(size_t *)((void *)mem); - free(mem); - } /* end if */ -} - -/**************************************************************** -** -** test_vltypes_data_create(): Dataset of VL is supposed to -** fail when fill value is never written to dataset. -** -****************************************************************/ -static void -test_vltypes_dataset_create(void) -{ - hid_t fid1; /* HDF5 File IDs */ - hid_t dcpl; /* Dataset Property list */ - hid_t dataset; /* Dataset ID */ - hsize_t dims1[] = {SPACE1_DIM1}; - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Datatype ID */ - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing Dataset of VL Datatype Functionality\n")); - - /* Create file */ - fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fcreate"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create a datatype to refer to */ - tid1 = H5Tvlen_create(H5T_NATIVE_UINT); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create dataset property list */ - dcpl = H5Pcreate(H5P_DATASET_CREATE); - CHECK(dcpl, FAIL, "H5Pcreate"); - - /* Set fill value writing time to be NEVER */ - ret = H5Pset_fill_time(dcpl, H5D_FILL_TIME_NEVER); - CHECK(ret, FAIL, "H5Pset_fill_time"); - - /* Create a dataset, supposed to fail */ - H5E_BEGIN_TRY - { - dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, dcpl, H5P_DEFAULT); - } - H5E_END_TRY - VERIFY(dataset, FAIL, "H5Dcreate2"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(dcpl); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); -} - -/**************************************************************** -** -** test_vltypes_funcs(): Test some type functions that are and -** aren't supposed to work with VL type. -** -****************************************************************/ -static void -test_vltypes_funcs(void) -{ - hid_t type; /* Datatype ID */ - size_t size; - H5T_pad_t inpad; - H5T_norm_t norm; - H5T_cset_t cset; - H5T_str_t strpad; - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing some type functions for VL\n")); - - /* Create a datatype to refer to */ - type = H5Tvlen_create(H5T_IEEE_F32BE); - CHECK(type, FAIL, "H5Tvlen_create"); - - size = H5Tget_precision(type); - CHECK(size, 0, "H5Tget_precision"); - - size = H5Tget_size(type); - CHECK(size, 0, "H5Tget_size"); - - size = H5Tget_ebias(type); - CHECK(size, 0, "H5Tget_ebias"); - - ret = H5Tset_pad(type, H5T_PAD_ZERO, H5T_PAD_ONE); - CHECK(ret, FAIL, "H5Tset_pad"); - - inpad = H5Tget_inpad(type); - CHECK(inpad, FAIL, "H5Tget_inpad"); - - norm = H5Tget_norm(type); - CHECK(norm, FAIL, "H5Tget_norm"); - - ret = H5Tset_offset(type, (size_t)16); - CHECK(ret, FAIL, "H5Tset_offset"); - - H5E_BEGIN_TRY - { - cset = H5Tget_cset(type); - } - H5E_END_TRY - VERIFY(cset, FAIL, "H5Tget_cset"); - - H5E_BEGIN_TRY - { - strpad = H5Tget_strpad(type); - } - H5E_END_TRY - VERIFY(strpad, FAIL, "H5Tget_strpad"); - - /* Close datatype */ - ret = H5Tclose(type); - CHECK(ret, FAIL, "H5Tclose"); -} - -/**************************************************************** -** -** test_vltypes_vlen_atomic(): Test basic VL datatype code. -** Tests VL datatypes of atomic datatypes -** -****************************************************************/ -static void -test_vltypes_vlen_atomic(void) -{ - hvl_t wdata[SPACE1_DIM1]; /* Information to write */ - hvl_t wdata2[SPACE1_DIM1]; /* Information to write */ - hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hvl_t fill; /* Fill value */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t sid2; /* ID of bad dataspace (no extent set) */ - hid_t tid1; /* Datatype ID */ - hid_t dcpl_pid; /* Dataset creation property list ID */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing Basic Atomic VL Datatype Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].p = malloc((i + 1) * sizeof(unsigned int)); - wdata[i].len = i + 1; - for (j = 0; j < (i + 1); j++) - ((unsigned int *)wdata[i].p)[j] = i * 10 + j; - - wdata2[i].p = NULL; - wdata2[i].len = 0; - } /* end for */ - - /* Create file */ - fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fcreate"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create a datatype to refer to */ - tid1 = H5Tvlen_create(H5T_NATIVE_UINT); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create a dataset */ - dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Read from dataset before writing data */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Check data read in */ - for (i = 0; i < SPACE1_DIM1; i++) - if (rdata[i].len != 0 || rdata[i].p != NULL) - TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i, - (unsigned)rdata[i].len, (int)i, rdata[i].p); - - /* Write "nil" data to disk */ - ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Read from dataset with "nil" data */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Check data read in */ - for (i = 0; i < SPACE1_DIM1; i++) - if (rdata[i].len != 0 || rdata[i].p != NULL) - TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i, - (unsigned)rdata[i].len, (int)i, rdata[i].p); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Create second dataset, with fill value */ - dcpl_pid = H5Pcreate(H5P_DATASET_CREATE); - CHECK(dcpl_pid, FAIL, "H5Pcreate"); - - /* Set the fill value for the second dataset */ - fill.p = NULL; - fill.len = 0; - ret = H5Pset_fill_value(dcpl_pid, tid1, &fill); - CHECK(ret, FAIL, "H5Pset_fill_value"); - - /* Create a second dataset */ - dataset = H5Dcreate2(fid1, "Dataset2", tid1, sid1, H5P_DEFAULT, dcpl_pid, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Close dataset creation property list */ - ret = H5Pclose(dcpl_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Read from dataset before writing data */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Check data read in */ - for (i = 0; i < SPACE1_DIM1; i++) - if (rdata[i].len != 0 || rdata[i].p != NULL) - TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i, - (unsigned)rdata[i].len, (int)i, rdata[i].p); - - /* Write "nil" data to disk */ - ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Read from dataset with "nil" data */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Check data read in */ - for (i = 0; i < SPACE1_DIM1; i++) - if (rdata[i].len != 0 || rdata[i].p != NULL) - TestErrPrintf("VL doesn't match!, rdata[%d].len=%u, rdata[%d].p=%p\n", (int)i, - (unsigned)rdata[i].len, (int)i, rdata[i].p); - - /* Write data to disk */ - ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open the file for data checking */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Get dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Get datatype for dataset */ - tid1 = H5Dget_type(dataset); - CHECK(tid1, FAIL, "H5Dget_type"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory will be used */ - ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data lengths don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].len; j++) { - if (((unsigned int *)wdata[i].p)[j] != ((unsigned int *)rdata[i].p)[j]) { - TestErrPrintf("VL data values don't match!, wdata[%d].p[%d]=%d, rdata[%d].p[%d]=%d\n", (int)i, - (int)j, (int)((unsigned int *)wdata[i].p)[j], (int)i, (int)j, - (int)((unsigned int *)rdata[i].p)[j]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the read VL data */ - ret = H5Treclaim(tid1, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Open second dataset */ - dataset = H5Dopen2(fid1, "Dataset2", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Get dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Get datatype for dataset */ - tid1 = H5Dget_type(dataset); - CHECK(tid1, FAIL, "H5Dget_type"); - - /* Create a "bad" dataspace with no extent set */ - sid2 = H5Screate(H5S_SIMPLE); - CHECK(sid2, FAIL, "H5Screate"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory will be used */ - ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dvlen_get_buf_size"); - - /* Try to call H5Dvlen_get_buf with bad dataspace */ - H5E_BEGIN_TRY - { - ret = H5Dvlen_get_buf_size(dataset, tid1, sid2, &size); - } - H5E_END_TRY - VERIFY(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data lengths don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].len; j++) { - if (((unsigned int *)wdata[i].p)[j] != ((unsigned int *)rdata[i].p)[j]) { - TestErrPrintf("VL data values don't match!, wdata[%d].p[%d]=%d, rdata[%d].p[%d]=%d\n", (int)i, - (int)j, (int)((unsigned int *)wdata[i].p)[j], (int)i, (int)j, - (int)((unsigned int *)rdata[i].p)[j]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Try to reclaim read data using "bad" dataspace with no extent - * Should fail */ - H5E_BEGIN_TRY - { - ret = H5Treclaim(tid1, sid2, xfer_pid, rdata); - } - H5E_END_TRY - VERIFY(ret, FAIL, "H5Treclaim"); - - /* Reclaim the read VL data */ - ret = H5Treclaim(tid1, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end test_vltypes_vlen_atomic() */ - -/**************************************************************** -** -** rewrite_vltypes_vlen_atomic(): check memory leak for basic VL datatype. -** Check memory leak for VL datatypes of atomic datatypes -** -****************************************************************/ -static void -rewrite_vltypes_vlen_atomic(void) -{ - hvl_t wdata[SPACE1_DIM1]; /* Information to write */ - hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Datatype ID */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - unsigned increment = 4; - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Check Memory Leak for Basic Atomic VL Datatype Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].p = malloc((i + increment) * sizeof(unsigned int)); - wdata[i].len = i + increment; - for (j = 0; j < (i + increment); j++) - ((unsigned int *)wdata[i].p)[j] = i * 20 + j; - } /* end for */ - - /* Open file created in test_vltypes_vlen_atomic() */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open the dataset created in test_vltypes_vlen_atomic() */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Open dataspace for dataset */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Get datatype for dataset */ - tid1 = H5Dget_type(dataset); - CHECK(tid1, FAIL, "H5Dget_type"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open the file for data checking */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Get dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Get datatype for dataset */ - tid1 = H5Dget_type(dataset); - CHECK(tid1, FAIL, "H5Dget_type"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory will be used */ - ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 22 elements allocated = 4+5+6+7 elements for each array position */ - VERIFY(size, 22 * sizeof(unsigned int), "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 22 elements allocated = 4+5+6+7 elements for each array position */ - VERIFY(mem_used, 22 * sizeof(unsigned int), "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data lengths don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].len; j++) { - if (((unsigned int *)wdata[i].p)[j] != ((unsigned int *)rdata[i].p)[j]) { - TestErrPrintf("VL data values don't match!, wdata[%d].p[%d]=%d, rdata[%d].p[%d]=%d\n", (int)i, - (int)j, (int)((unsigned int *)wdata[i].p)[j], (int)i, (int)j, - (int)((unsigned int *)rdata[i].p)[j]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the read VL data */ - ret = H5Treclaim(tid1, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end rewrite_vltypes_vlen_atomic() */ - -/**************************************************************** -** -** test_vltypes_vlen_compound(): Test basic VL datatype code. -** Test VL datatypes of compound datatypes -** -****************************************************************/ -static void -test_vltypes_vlen_compound(void) -{ - typedef struct { /* Struct that the VL sequences are composed of */ - int i; - float f; - } s1; - hvl_t wdata[SPACE1_DIM1]; /* Information to write */ - hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing Basic Compound VL Datatype Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].p = malloc((i + 1) * sizeof(s1)); - wdata[i].len = i + 1; - for (j = 0; j < (i + 1); j++) { - ((s1 *)wdata[i].p)[j].i = (int)(i * 10 + j); - ((s1 *)wdata[i].p)[j].f = (float)(i * 20 + j) / 3.0F; - } /* end for */ - } /* end for */ - - /* Create file */ - fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fcreate"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create the base compound type */ - tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1)); - CHECK(tid2, FAIL, "H5Tcreate"); - - /* Insert fields */ - ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Create a datatype to refer to */ - tid1 = H5Tvlen_create(tid2); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create a dataset */ - dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory will be used */ - ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(s1), "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(s1), "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].len; j++) { - if (((s1 *)wdata[i].p)[j].i != ((s1 *)rdata[i].p)[j].i) { - TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].i=%d, rdata[%d].p[%d].i=%d\n", - (int)i, (int)j, (int)((s1 *)wdata[i].p)[j].i, (int)i, (int)j, - (int)((s1 *)rdata[i].p)[j].i); - continue; - } /* end if */ - if (!H5_FLT_ABS_EQUAL(((s1 *)wdata[i].p)[j].f, ((s1 *)rdata[i].p)[j].f)) { - TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].f=%f, rdata[%d].p[%d].f=%f\n", - (int)i, (int)j, (double)((s1 *)wdata[i].p)[j].f, (int)i, (int)j, - (double)((s1 *)rdata[i].p)[j].f); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the VL data */ - ret = H5Treclaim(tid1, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end test_vltypes_vlen_compound() */ - -/**************************************************************** -** -** rewrite_vltypes_vlen_compound(): Check memory leak for basic VL datatype. -** Checks memory leak for VL datatypes of compound datatypes -** -****************************************************************/ -static void -rewrite_vltypes_vlen_compound(void) -{ - typedef struct { /* Struct that the VL sequences are composed of */ - int i; - float f; - } s1; - hvl_t wdata[SPACE1_DIM1]; /* Information to write */ - hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - unsigned increment = 4; - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Check Memory Leak for Basic Compound VL Datatype Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].p = malloc((i + increment) * sizeof(s1)); - wdata[i].len = i + increment; - for (j = 0; j < (i + increment); j++) { - ((s1 *)wdata[i].p)[j].i = (int)(i * 40 + j); - ((s1 *)wdata[i].p)[j].f = (float)(i * 60 + j) / 3.0F; - } /* end for */ - } /* end for */ - - /* Create file */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Create the base compound type */ - tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1)); - CHECK(tid2, FAIL, "H5Tcreate"); - - ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Create a datatype to refer to */ - tid1 = H5Tvlen_create(tid2); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Create dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory will be used */ - ret = H5Dvlen_get_buf_size(dataset, tid1, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 22 elements allocated = 4 + 5 + 6 + 7 elements for each array position */ - VERIFY(size, 22 * sizeof(s1), "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 22 elements allocated = 4 + 5 + 6 + 7 elements for each array position */ - VERIFY(mem_used, 22 * sizeof(s1), "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].len; j++) { - if (((s1 *)wdata[i].p)[j].i != ((s1 *)rdata[i].p)[j].i) { - TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].i=%d, rdata[%d].p[%d].i=%d\n", - (int)i, (int)j, (int)((s1 *)wdata[i].p)[j].i, (int)i, (int)j, - (int)((s1 *)rdata[i].p)[j].i); - continue; - } /* end if */ - if (!H5_FLT_ABS_EQUAL(((s1 *)wdata[i].p)[j].f, ((s1 *)rdata[i].p)[j].f)) { - TestErrPrintf("VL data values don't match!, wdata[%d].p[%d].f=%f, rdata[%d].p[%d].f=%f\n", - (int)i, (int)j, (double)((s1 *)wdata[i].p)[j].f, (int)i, (int)j, - (double)((s1 *)rdata[i].p)[j].f); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the VL data */ - ret = H5Treclaim(tid1, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid1, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end rewrite_vltypes_vlen_compound() */ - -/**************************************************************** -** -** test_vltypes_compound_vlen_vlen(): Test basic VL datatype code. -** Tests compound datatypes with VL datatypes of VL datatypes. -** -****************************************************************/ -static void -test_vltypes_compound_vlen_vlen(void) -{ - typedef struct { /* Struct that the compound type are composed of */ - int i; - float f; - hvl_t v; - } s1; - s1 *wdata; /* data to write */ - s1 *rdata; /* data to read */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2, tid3; /* Datatype IDs */ - hsize_t dims1[] = {SPACE3_DIM1}; - unsigned i, j, k; /* counting variables */ - hvl_t *t1, *t2; /* Temporary pointer to VL information */ - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing Compound Datatypes with VL Atomic Datatype Component Functionality\n")); - - /* Allocate and initialize VL data to write */ - wdata = (s1 *)malloc(sizeof(s1) * SPACE3_DIM1); - CHECK_PTR(wdata, "malloc"); - rdata = (s1 *)malloc(sizeof(s1) * SPACE3_DIM1); - CHECK_PTR(rdata, "malloc"); - for (i = 0; i < SPACE3_DIM1; i++) { - wdata[i].i = (int)(i * 10); - wdata[i].f = (float)(i * 20) / 3.0F; - wdata[i].v.p = malloc((i + L1_INCM) * sizeof(hvl_t)); - wdata[i].v.len = i + L1_INCM; - for (t1 = (hvl_t *)((wdata[i].v).p), j = 0; j < (i + L1_INCM); j++, t1++) { - t1->p = malloc((j + L2_INCM) * sizeof(unsigned int)); - t1->len = j + L2_INCM; - for (k = 0; k < j + L2_INCM; k++) - ((unsigned int *)t1->p)[k] = i * 100 + j * 10 + k; - } /* end for */ - } /* end for */ - - /* Create file */ - fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fcreate"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE3_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create a VL datatype to refer to */ - tid3 = H5Tvlen_create(H5T_NATIVE_UINT); - CHECK(tid3, FAIL, "H5Tvlen_create"); - - /* Create a VL datatype to refer to */ - tid1 = H5Tvlen_create(tid3); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create the base compound type */ - tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1)); - CHECK(tid2, FAIL, "H5Tcreate"); - - /* Insert fields */ - ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Create a dataset */ - dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open file */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE3_DIM1; i++) { - if (wdata[i].i != rdata[i].i) { - TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i, - (int)wdata[i].i, (int)i, (int)rdata[i].i); - continue; - } /* end if */ - if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) { - TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i, - (double)wdata[i].f, (int)i, (double)rdata[i].f); - continue; - } /* end if */ - - if (wdata[i].v.len != rdata[i].v.len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n", - __LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len); - continue; - } /* end if */ - - for (t1 = (hvl_t *)(wdata[i].v.p), t2 = (hvl_t *)(rdata[i].v.p), j = 0; j < rdata[i].v.len; - j++, t1++, t2++) { - if (t1->len != t2->len) { - TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n", - __LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len); - continue; - } /* end if */ - for (k = 0; k < t2->len; k++) { - if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) { - TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k, - (int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - } /* end for */ - - /* Reclaim the VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid3); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Release buffers */ - free(wdata); - free(rdata); -} /* end test_vltypes_compound_vlen_vlen() */ - -/**************************************************************** -** -** test_vltypes_compound_vlstr(): Test VL datatype code. -** Tests VL datatypes of compound datatypes with VL string. -** Dataset is extensible chunked, and data is rewritten with -** shorter VL data. -** -****************************************************************/ -static void -test_vltypes_compound_vlstr(void) -{ - typedef enum { red, blue, green } e1; - typedef struct { - char *string; - e1 color; - } s2; - typedef struct { /* Struct that the compound type are composed of */ - hvl_t v; - } s1; - s1 wdata[SPACE1_DIM1]; /* data to write */ - s1 wdata2[SPACE1_DIM1]; /* data to write */ - s1 rdata[SPACE1_DIM1]; /* data to read */ - s1 rdata2[SPACE1_DIM1]; /* data to read */ - char str[64] = "a\0"; - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset, dset2; /* Dataset ID */ - hid_t sid1, sid2, filespace, filespace2; /* Dataspace ID */ - hid_t tid1, tid2, tid3, tid4, tid5; /* Datatype IDs */ - hid_t cparms; - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t chunk_dims[] = {SPACE1_DIM1 / 2}; - hsize_t maxdims[] = {H5S_UNLIMITED}; - hsize_t size[] = {SPACE1_DIM1}; - hsize_t offset[] = {0}; - unsigned i, j; /* counting variables */ - s2 *t1, *t2; /* Temporary pointer to VL information */ - int val; - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing VL Datatype of Compound Datatype with VL String Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].v.p = (s2 *)malloc((i + L3_INCM) * sizeof(s2)); - wdata[i].v.len = i + L3_INCM; - for (t1 = (s2 *)((wdata[i].v).p), j = 0; j < (i + L3_INCM); j++, t1++) { - strcat(str, "m"); - t1->string = (char *)malloc(strlen(str) * sizeof(char) + 1); - strcpy(t1->string, str); - /*t1->color = red;*/ - t1->color = blue; - } - } /* end for */ - - /* Create file */ - fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fcreate"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, maxdims); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create a VL string type*/ - tid4 = H5Tcopy(H5T_C_S1); - CHECK(tid4, FAIL, "H5Tcopy"); - ret = H5Tset_size(tid4, H5T_VARIABLE); - CHECK(ret, FAIL, "H5Tset_size"); - - /* Create an enum type */ - tid3 = H5Tenum_create(H5T_STD_I32LE); - val = 0; - ret = H5Tenum_insert(tid3, "RED", &val); - CHECK(ret, FAIL, "H5Tenum_insert"); - val = 1; - ret = H5Tenum_insert(tid3, "BLUE", &val); - CHECK(ret, FAIL, "H5Tenum_insert"); - val = 2; - ret = H5Tenum_insert(tid3, "GREEN", &val); - CHECK(ret, FAIL, "H5Tenum_insert"); - - /* Create the first layer compound type */ - tid5 = H5Tcreate(H5T_COMPOUND, sizeof(s2)); - CHECK(tid5, FAIL, "H5Tcreate"); - /* Insert fields */ - ret = H5Tinsert(tid5, "string", HOFFSET(s2, string), tid4); - CHECK(ret, FAIL, "H5Tinsert"); - /* Insert fields */ - ret = H5Tinsert(tid5, "enumerate", HOFFSET(s2, color), tid3); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Create a VL datatype of first layer compound type */ - tid1 = H5Tvlen_create(tid5); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create the base compound type */ - tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1)); - CHECK(tid2, FAIL, "H5Tcreate"); - - /* Insert fields */ - ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Modify dataset creation properties, i.e. enable chunking */ - cparms = H5Pcreate(H5P_DATASET_CREATE); - ret = H5Pset_chunk(cparms, SPACE1_RANK, chunk_dims); - CHECK(ret, FAIL, "H5Pset_chunk"); - - /* Create a dataset */ - dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, cparms, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Extend the dataset. This call assures that dataset is 4.*/ - ret = H5Dset_extent(dataset, size); - CHECK(ret, FAIL, "H5Dset_extent"); - - /* Select a hyperslab */ - filespace = H5Dget_space(dataset); - ret = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL, dims1, NULL); - CHECK(ret, FAIL, "H5Sselect_hyperslab"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, sid1, filespace, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - ret = H5Fflush(fid1, H5F_SCOPE_GLOBAL); - CHECK(ret, FAIL, "H5Fflush"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close disk dataspace */ - ret = H5Sclose(filespace); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close datatype */ - ret = H5Tclose(tid4); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid5); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid3); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close Property list */ - ret = H5Pclose(cparms); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open file */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open the dataset */ - dset2 = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dset2, FAIL, "H5Dopen2"); - - /* Get the data type */ - tid2 = H5Dget_type(dset2); - CHECK(tid2, FAIL, "H5Dget_type"); - - /* Read dataset from disk */ - ret = H5Dread(dset2, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].v.len != rdata[i].v.len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n", - __LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len); - continue; - } /* end if */ - - for (t1 = (s2 *)(wdata[i].v.p), t2 = (s2 *)(rdata[i].v.p), j = 0; j < rdata[i].v.len; - j++, t1++, t2++) { - if (strcmp(t1->string, t2->string) != 0) { - TestErrPrintf("VL data values don't match!, t1->string=%s, t2->string=%s\n", t1->string, - t2->string); - continue; - } /* end if */ - if (t1->color != t2->color) { - TestErrPrintf("VL data values don't match!, t1->color=%d, t2->color=%d\n", t1->color, - t2->color); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Use this part for new data */ - strcpy(str, "bbbbbbbb\0"); - for (i = 0; i < SPACE1_DIM1; i++) { - wdata2[i].v.p = (s2 *)malloc((i + 1) * sizeof(s2)); - wdata2[i].v.len = i + 1; - for (t1 = (s2 *)(wdata2[i].v).p, j = 0; j < i + 1; j++, t1++) { - strcat(str, "pp"); - t1->string = (char *)malloc(strlen(str) * sizeof(char) + 1); - strcpy(t1->string, str); - t1->color = green; - } - } /* end for */ - - /* Select a hyperslab */ - filespace2 = H5Dget_space(dset2); - ret = H5Sselect_hyperslab(filespace2, H5S_SELECT_SET, offset, NULL, dims1, NULL); - CHECK(ret, FAIL, "H5Sselect_hyperslab"); - - /* Create dataspace for datasets */ - sid2 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Write dataset to disk */ - ret = H5Dwrite(dset2, tid2, sid2, filespace2, H5P_DEFAULT, &wdata2); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Read dataset from disk */ - ret = H5Dread(dset2, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata2[i].v.len != rdata2[i].v.len) { - TestErrPrintf("%d: VL data length don't match!, wdata2[%d].v.len=%d, rdata2[%d].v.len=%d\n", - __LINE__, (int)i, (int)wdata2[i].v.len, (int)i, (int)rdata2[i].v.len); - continue; - } /* end if */ - - for (t1 = (s2 *)(wdata2[i].v.p), t2 = (s2 *)(rdata2[i].v.p), j = 0; j < rdata2[i].v.len; - j++, t1++, t2++) { - if (strcmp(t1->string, t2->string) != 0) { - TestErrPrintf("VL data values don't match!, t1->string=%s, t2->string=%s\n", t1->string, - t2->string); - continue; - } /* end if */ - if (t1->color != t2->color) { - TestErrPrintf("VL data values don't match!, t1->color=%d, t2->color=%d\n", t1->color, - t2->color); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata2); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Reclaim the VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata2); - CHECK(ret, FAIL, "H5Treclaim"); - - ret = H5Dclose(dset2); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid2); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close disk dataspace */ - ret = H5Sclose(filespace2); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); -} /* end test_vltypes_compound_vlstr() */ - -/**************************************************************** -** -** test_vltypes_compound_vlen_atomic(): Test basic VL datatype code. -** Tests compound datatypes with VL datatypes of atomic datatypes. -** -****************************************************************/ -static void -test_vltypes_compound_vlen_atomic(void) -{ - typedef struct { /* Struct that the VL sequences are composed of */ - int i; - float f; - hvl_t v; - } s1; - s1 wdata[SPACE1_DIM1]; /* Information to write */ - s1 rdata[SPACE1_DIM1]; /* Information read in */ - s1 fill; /* Fill value */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hid_t dcpl_pid; /* Dataset creation property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing Compound Datatypes with VL Atomic Datatype Component Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].i = (int)(i * 10); - wdata[i].f = (float)(i * 20) / 3.0F; - wdata[i].v.p = malloc((i + 1) * sizeof(unsigned int)); - wdata[i].v.len = i + 1; - for (j = 0; j < (i + 1); j++) - ((unsigned int *)wdata[i].v.p)[j] = i * 10 + j; - } /* end for */ - - /* Create file */ - fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fcreate"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create a VL datatype to refer to */ - tid1 = H5Tvlen_create(H5T_NATIVE_UINT); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create the base compound type */ - tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1)); - CHECK(tid2, FAIL, "H5Tcreate"); - - /* Insert fields */ - ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Create a dataset */ - dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory will be used */ - ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(size, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - VERIFY(mem_used, ((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(unsigned int), "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].i != rdata[i].i) { - TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i, - (int)wdata[i].i, (int)i, (int)rdata[i].i); - continue; - } /* end if */ - if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) { - TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i, - (double)wdata[i].f, (int)i, (double)rdata[i].f); - continue; - } /* end if */ - if (wdata[i].v.len != rdata[i].v.len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n", - __LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].v.len; j++) { - if (((unsigned int *)wdata[i].v.p)[j] != ((unsigned int *)rdata[i].v.p)[j]) { - TestErrPrintf("VL data values don't match!, wdata[%d].v.p[%d]=%d, rdata[%d].v.p[%d]=%d\n", - (int)i, (int)j, (int)((unsigned int *)wdata[i].v.p)[j], (int)i, (int)j, - (int)((unsigned int *)rdata[i].v.p)[j]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the VL data */ - ret = H5Treclaim(tid2, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Create a second dataset, with a fill value */ - dcpl_pid = H5Pcreate(H5P_DATASET_CREATE); - CHECK(dcpl_pid, FAIL, "H5Pcreate"); - - /* Set the fill value for the second dataset */ - memset(&fill, 0, sizeof(s1)); - ret = H5Pset_fill_value(dcpl_pid, tid2, &fill); - CHECK(ret, FAIL, "H5Pset_fill_value"); - - dataset = H5Dcreate2(fid1, "Dataset2", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Close dataset creation property list */ - ret = H5Pclose(dcpl_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Read from dataset before writing data */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Check data read in */ - for (i = 0; i < SPACE1_DIM1; i++) - if (rdata[i].i != 0 || !H5_FLT_ABS_EQUAL(rdata[i].f, 0.0F) || rdata[i].v.len != 0 || - rdata[i].v.p != NULL) - TestErrPrintf( - "VL doesn't match!, rdata[%d].i=%d, rdata[%d].f=%f, rdata[%d].v.len=%u, rdata[%d].v.p=%p\n", - (int)i, rdata[i].i, (int)i, (double)rdata[i].f, (int)i, (unsigned)rdata[i].v.len, (int)i, - rdata[i].v.p); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].i != rdata[i].i) { - TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i, - (int)wdata[i].i, (int)i, (int)rdata[i].i); - continue; - } /* end if */ - if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) { - TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i, - (double)wdata[i].f, (int)i, (double)rdata[i].f); - continue; - } /* end if */ - if (wdata[i].v.len != rdata[i].v.len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n", - __LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].v.len; j++) { - if (((unsigned int *)wdata[i].v.p)[j] != ((unsigned int *)rdata[i].v.p)[j]) { - TestErrPrintf("VL data values don't match!, wdata[%d].v.p[%d]=%d, rdata[%d].v.p[%d]=%d\n", - (int)i, (int)j, (int)((unsigned int *)wdata[i].v.p)[j], (int)i, (int)j, - (int)((unsigned int *)rdata[i].v.p)[j]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end test_vltypes_compound_vlen_atomic() */ - -/**************************************************************** -** -** rewrite_vltypes_compound_vlen_atomic(): Check memory leak for -** basic VL datatype code. -** Check memory leak for compound datatypes with VL datatypes -** of atomic datatypes. -** -****************************************************************/ -static void -rewrite_vltypes_compound_vlen_atomic(void) -{ - typedef struct { /* Struct that the VL sequences are composed of */ - int i; - float f; - hvl_t v; - } s1; - s1 wdata[SPACE1_DIM1]; /* Information to write */ - s1 rdata[SPACE1_DIM1]; /* Information read in */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - unsigned increment = 4; - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, - ("Checking memory leak for compound datatype with VL Atomic Datatype Component Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].i = (int)(i * 40); - wdata[i].f = (float)(i * 50) / 3.0F; - wdata[i].v.p = malloc((i + increment) * sizeof(unsigned int)); - wdata[i].v.len = i + increment; - for (j = 0; j < (i + increment); j++) - ((unsigned int *)wdata[i].v.p)[j] = i * 60 + j; - } /* end for */ - - /* Create file */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Create a VL datatype to refer to */ - tid1 = H5Tvlen_create(H5T_NATIVE_UINT); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create the base compound type */ - tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1)); - CHECK(tid2, FAIL, "H5Tcreate"); - - /* Insert fields */ - ret = H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT); - CHECK(ret, FAIL, "H5Tinsert"); - ret = H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Create a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Create dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory will be used */ - ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 22 elements allocated = 4+5+6+7 elements for each array position */ - VERIFY(size, 22 * sizeof(unsigned int), "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 22 elements allocated = 4+5+6+7 elements for each array position */ - VERIFY(mem_used, 22 * sizeof(unsigned int), "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].i != rdata[i].i) { - TestErrPrintf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n", (int)i, - (int)wdata[i].i, (int)i, (int)rdata[i].i); - continue; - } /* end if */ - if (!H5_FLT_ABS_EQUAL(wdata[i].f, rdata[i].f)) { - TestErrPrintf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n", (int)i, - (double)wdata[i].f, (int)i, (double)rdata[i].f); - continue; - } /* end if */ - if (wdata[i].v.len != rdata[i].v.len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n", - __LINE__, (int)i, (int)wdata[i].v.len, (int)i, (int)rdata[i].v.len); - continue; - } /* end if */ - for (j = 0; j < rdata[i].v.len; j++) { - if (((unsigned int *)wdata[i].v.p)[j] != ((unsigned int *)rdata[i].v.p)[j]) { - TestErrPrintf("VL data values don't match!, wdata[%d].v.p[%d]=%d, rdata[%d].v.p[%d]=%d\n", - (int)i, (int)j, (int)((unsigned int *)wdata[i].v.p)[j], (int)i, (int)j, - (int)((unsigned int *)rdata[i].v.p)[j]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - - /* Reclaim the VL data */ - ret = H5Treclaim(tid2, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end rewrite_vltypes_compound_vlen_atomic() */ - -/**************************************************************** -** -** vlen_size_func(): Test basic VL datatype code. -** Tests VL datatype with VL datatypes of atomic datatypes. -** -****************************************************************/ -static size_t -vlen_size_func(unsigned long n) -{ - size_t u = 1; - size_t tmp = 1; - size_t result = 1; - - while (u < n) { - u++; - tmp += u; - result += tmp; - } - return (result); -} - -/**************************************************************** -** -** test_vltypes_vlen_vlen_atomic(): Test basic VL datatype code. -** Tests VL datatype with VL datatypes of atomic datatypes. -** -****************************************************************/ -static void -test_vltypes_vlen_vlen_atomic(void) -{ - hvl_t wdata[SPACE1_DIM1]; /* Information to write */ - hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hvl_t *t1, *t2; /* Temporary pointer to VL information */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j, k; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Testing VL Datatypes with VL Atomic Datatype Component Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].p = malloc((i + 1) * sizeof(hvl_t)); - if (wdata[i].p == NULL) { - TestErrPrintf("Cannot allocate memory for VL data! i=%u\n", i); - return; - } /* end if */ - wdata[i].len = i + 1; - for (t1 = (hvl_t *)(wdata[i].p), j = 0; j < (i + 1); j++, t1++) { - t1->p = malloc((j + 1) * sizeof(unsigned int)); - if (t1->p == NULL) { - TestErrPrintf("Cannot allocate memory for VL data! i=%u, j=%u\n", i, j); - return; - } /* end if */ - t1->len = j + 1; - for (k = 0; k < (j + 1); k++) - ((unsigned int *)t1->p)[k] = i * 100 + j * 10 + k; - } /* end for */ - } /* end for */ - - /* Create file */ - fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fcreate"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create a VL datatype to refer to */ - tid1 = H5Tvlen_create(H5T_NATIVE_UINT); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create the base VL type */ - tid2 = H5Tvlen_create(tid1); - CHECK(tid2, FAIL, "H5Tvlen_create"); - - /* Create a dataset */ - dataset = H5Dcreate2(fid1, "Dataset1", tid2, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dcreate2"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open file */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Create dataspace for datasets */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - CHECK(sid1, FAIL, "H5Screate_simple"); - - /* Create a VL datatype to refer to */ - tid1 = H5Tvlen_create(H5T_NATIVE_UINT); - CHECK(tid1, FAIL, "H5Tvlen_create"); - - /* Create the base VL type */ - tid2 = H5Tvlen_create(tid1); - CHECK(tid2, FAIL, "H5Tvlen_create"); - - /* Open a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory was used */ - ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - /* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */ - VERIFY(size, - (hsize_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) + - vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)), - "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - /* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */ - VERIFY(mem_used, - (size_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) + - vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)), - "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (t1 = (hvl_t *)wdata[i].p, t2 = (hvl_t *)(rdata[i].p), j = 0; j < rdata[i].len; j++, t1++, t2++) { - if (t1->len != t2->len) { - TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n", - __LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len); - continue; - } /* end if */ - for (k = 0; k < t2->len; k++) { - if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) { - TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k, - (int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - } /* end for */ - - /* Reclaim all the (nested) VL data */ - ret = H5Treclaim(tid2, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close datatype */ - ret = H5Tclose(tid1); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end test_vltypes_vlen_vlen_atomic() */ - -/**************************************************************** -** -** rewrite_longer_vltypes_vlen_vlen_atomic(): Test basic VL datatype code. -** Tests VL datatype with VL datatypes of atomic datatypes. -** -****************************************************************/ -static void -rewrite_longer_vltypes_vlen_vlen_atomic(void) -{ - hvl_t wdata[SPACE1_DIM1]; /* Information to write */ - hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hvl_t *t1, *t2; /* Temporary pointer to VL information */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid2; /* Datatype IDs */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j, k; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - unsigned increment = 1; - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Check memory leak for VL Datatypes with VL Atomic Datatype Component Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].p = malloc((i + increment) * sizeof(hvl_t)); - if (wdata[i].p == NULL) { - TestErrPrintf("Cannot allocate memory for VL data! i=%u\n", i); - return; - } /* end if */ - wdata[i].len = i + increment; - for (t1 = (hvl_t *)(wdata[i].p), j = 0; j < (i + increment); j++, t1++) { - t1->p = malloc((j + 1) * sizeof(unsigned int)); - if (t1->p == NULL) { - TestErrPrintf("Cannot allocate memory for VL data! i=%u, j=%u\n", i, j); - return; - } /* end if */ - t1->len = j + 1; - for (k = 0; k < (j + 1); k++) - ((unsigned int *)t1->p)[k] = i * 1000 + j * 100 + k * 10; - } /* end for */ - } /* end for */ - - /* Open file */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open the dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Get dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Open datatype of the dataset */ - tid2 = H5Dget_type(dataset); - CHECK(tid2, FAIL, "H5Dget_type"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open the file for data checking */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Get dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Get datatype for dataset */ - tid2 = H5Dget_type(dataset); - CHECK(tid2, FAIL, "H5Dget_type"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory was used */ - ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 18 hvl_t elements allocated = 3 + 4 + 5 + 6 elements for each array position */ - /* 52 unsigned int elements allocated = 6 + 10 + 15 + 21 elements */ - /*VERIFY(size, 18 * sizeof(hvl_t) + 52 * sizeof(unsigned int), "H5Dvlen_get_buf_size");*/ - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 18 hvl_t elements allocated = 3+4+5+6elements for each array position */ - /* 52 unsigned int elements allocated = 6+10+15+21 elements */ - /*VERIFY(mem_used,18*sizeof(hvl_t)+52*sizeof(unsigned int),"H5Dread");*/ - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (t1 = (hvl_t *)(wdata[i].p), t2 = (hvl_t *)(rdata[i].p), j = 0; j < rdata[i].len; - j++, t1++, t2++) { - if (t1->len != t2->len) { - TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n", - __LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len); - continue; - } /* end if */ - for (k = 0; k < t2->len; k++) { - if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) { - TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k, - (int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - } /* end for */ - - /* Reclaim all the (nested) VL data */ - ret = H5Treclaim(tid2, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end rewrite_longer_vltypes_vlen_vlen_atomic() */ - -/**************************************************************** -** -** rewrite_shorter_vltypes_vlen_vlen_atomic(): Test basic VL datatype code. -** Tests VL datatype with VL datatypes of atomic datatypes. -** -****************************************************************/ -static void -rewrite_shorter_vltypes_vlen_vlen_atomic(void) -{ - hvl_t wdata[SPACE1_DIM1]; /* Information to write */ - hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hvl_t *t1, *t2; /* Temporary pointer to VL information */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid2; /* Datatype IDs */ - hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t size; /* Number of bytes which will be used */ - unsigned i, j, k; /* counting variables */ - size_t mem_used = 0; /* Memory used during allocation */ - unsigned increment = 1; - herr_t ret; /* Generic return value */ - - /* Output message about test being performed */ - MESSAGE(5, ("Check memory leak for VL Datatypes with VL Atomic Datatype Component Functionality\n")); - - /* Allocate and initialize VL data to write */ - for (i = 0; i < SPACE1_DIM1; i++) { - wdata[i].p = malloc((i + increment) * sizeof(hvl_t)); - if (wdata[i].p == NULL) { - TestErrPrintf("Cannot allocate memory for VL data! i=%u\n", i); - return; - } /* end if */ - wdata[i].len = i + increment; - for (t1 = (hvl_t *)(wdata[i].p), j = 0; j < (i + increment); j++, t1++) { - t1->p = malloc((j + 1) * sizeof(unsigned int)); - if (t1->p == NULL) { - TestErrPrintf("Cannot allocate memory for VL data! i=%u, j=%u\n", i, j); - return; - } /* end if */ - t1->len = j + 1; - for (k = 0; k < (j + 1); k++) - ((unsigned int *)t1->p)[k] = i * 100000 + j * 1000 + k * 10; - } /* end for */ - } /* end for */ - - /* Open file */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open the dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Get dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Open datatype of the dataset */ - tid2 = H5Dget_type(dataset); - CHECK(tid2, FAIL, "H5Dget_type"); - - /* Write dataset to disk */ - ret = H5Dwrite(dataset, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open the file for data checking */ - fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(fid1, FAIL, "H5Fopen"); - - /* Open a dataset */ - dataset = H5Dopen2(fid1, "Dataset1", H5P_DEFAULT); - CHECK(dataset, FAIL, "H5Dopen2"); - - /* Get dataspace for datasets */ - sid1 = H5Dget_space(dataset); - CHECK(sid1, FAIL, "H5Dget_space"); - - /* Get datatype for dataset */ - tid2 = H5Dget_type(dataset); - CHECK(tid2, FAIL, "H5Dget_type"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Make certain the correct amount of memory was used */ - ret = H5Dvlen_get_buf_size(dataset, tid2, sid1, &size); - CHECK(ret, FAIL, "H5Dvlen_get_buf_size"); - - /* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - /* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */ - VERIFY(size, - (hsize_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) + - vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)), - "H5Dvlen_get_buf_size"); - - /* Read dataset from disk */ - ret = H5Dread(dataset, tid2, H5S_ALL, H5S_ALL, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Make certain the correct amount of memory has been used */ - /* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */ - /* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */ - VERIFY(mem_used, - (size_t)(((SPACE1_DIM1 * (SPACE1_DIM1 + 1)) / 2) * sizeof(hvl_t) + - vlen_size_func((unsigned long)SPACE1_DIM1) * sizeof(unsigned int)), - "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < SPACE1_DIM1; i++) { - if (wdata[i].len != rdata[i].len) { - TestErrPrintf("%d: VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n", __LINE__, - (int)i, (int)wdata[i].len, (int)i, (int)rdata[i].len); - continue; - } /* end if */ - for (t1 = (hvl_t *)(wdata[i].p), t2 = (hvl_t *)(rdata[i].p), j = 0; j < rdata[i].len; - j++, t1++, t2++) { - if (t1->len != t2->len) { - TestErrPrintf("%d: VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n", - __LINE__, (int)i, (int)j, (int)t1->len, (int)t2->len); - continue; - } /* end if */ - for (k = 0; k < t2->len; k++) { - if (((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k]) { - TestErrPrintf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n", (int)k, - (int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]); - continue; - } /* end if */ - } /* end for */ - } /* end for */ - } /* end for */ - - /* Reclaim all the (nested) VL data */ - ret = H5Treclaim(tid2, sid1, xfer_pid, rdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Make certain the VL memory has been freed */ - VERIFY(mem_used, 0, "H5Treclaim"); - - /* Reclaim the write VL data */ - ret = H5Treclaim(tid2, sid1, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Close Dataset */ - ret = H5Dclose(dataset); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close datatype */ - ret = H5Tclose(tid2); - CHECK(ret, FAIL, "H5Tclose"); - - /* Close disk dataspace */ - ret = H5Sclose(sid1); - CHECK(ret, FAIL, "H5Sclose"); - - /* Close dataset transfer property list */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - /* Close file */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - -} /* end rewrite_shorter_vltypes_vlen_vlen_atomic() */ - -/**************************************************************** -** -** test_vltypes_fill_value(): Test fill value for VL data. -** One tests data space isn't allocated; another tests data -** space is allocated. -** -****************************************************************/ -static void -test_vltypes_fill_value(void) -{ - typedef struct dtype1_struct { - unsigned int gui; - unsigned int pgui; - const char *str_id; - const char *str_name; - const char *str_desc; - const char *str_orig; - const char *str_stat; - unsigned int ver; - double val; - double ma; - double mi; - const char *str_form; - const char *str_unit; - } dtype1_struct; - - herr_t ret; - hid_t file_id; - hid_t dtype1_id = -1; - hid_t str_id = -1; - hid_t small_dspace_id; /* Dataspace ID for small datasets */ - hid_t large_dspace_id; /* Dataspace ID for large datasets */ - hid_t small_select_dspace_id; /* Dataspace ID for selection in small datasets */ - hid_t large_select_dspace_id; /* Dataspace ID for selection in large datasets */ - hid_t dset_dspace_id = -1; /* Dataspace ID for a particular dataset */ - hid_t dset_select_dspace_id = -1; /* Dataspace ID for selection in a particular dataset */ - hid_t scalar_dspace_id; /* Dataspace ID for scalar dataspace */ - hid_t single_dspace_id; /* Dataspace ID for single element selection */ - hsize_t single_offset[] = {2}; /* Offset of single element selection */ - hsize_t single_block[] = {1}; /* Block size of single element selection */ - hsize_t select_offset[] = {0}; /* Offset of non-contiguous element selection */ - hsize_t select_stride[] = {2}; /* Stride size of non-contiguous element selection */ - hsize_t small_select_count[] = {SPACE4_DIM_SMALL / - 2}; /* Count of small non-contiguous element selection */ - hsize_t large_select_count[] = {SPACE4_DIM_LARGE / - 2}; /* Count of large non-contiguous element selection */ - hsize_t select_block[] = {1}; /* Block size of non-contiguous element selection */ - hid_t dcpl_id, xfer_pid; - hid_t dset_id; - hsize_t small_dims[] = {SPACE4_DIM_SMALL}; - hsize_t large_dims[] = {SPACE4_DIM_LARGE}; - size_t dset_elmts = 0; /* Number of elements in a particular dataset */ - const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead", - 3, 4.0, 100.0, 1.0, "liquid", "meter"}; - const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0, 200.0, 2.0, "solid", "yard"}; - dtype1_struct *rbuf = NULL; /* Buffer for reading data */ - size_t mem_used = 0; /* Memory used during allocation */ - H5D_layout_t layout; /* Dataset storage layout */ - char dset_name1[64], dset_name2[64]; /* Dataset names */ - unsigned i; - - /* Output message about test being performed */ - MESSAGE(5, ("Check fill value for VL data\n")); - - /* Create a string datatype */ - str_id = H5Tcopy(H5T_C_S1); - CHECK(str_id, FAIL, "H5Tcopy"); - ret = H5Tset_size(str_id, H5T_VARIABLE); - CHECK(ret, FAIL, "H5Tset_size"); - - /* Create a compound data type */ - dtype1_id = H5Tcreate(H5T_COMPOUND, sizeof(struct dtype1_struct)); - CHECK(dtype1_id, FAIL, "H5Tcreate"); - - ret = H5Tinsert(dtype1_id, "guid", HOFFSET(struct dtype1_struct, gui), H5T_NATIVE_UINT); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "pguid", HOFFSET(struct dtype1_struct, pgui), H5T_NATIVE_UINT); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "str_id", HOFFSET(dtype1_struct, str_id), str_id); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "str_name", HOFFSET(dtype1_struct, str_name), str_id); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "str_desc", HOFFSET(dtype1_struct, str_desc), str_id); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "str_orig", HOFFSET(dtype1_struct, str_orig), str_id); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "str_stat", HOFFSET(dtype1_struct, str_stat), str_id); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "ver", HOFFSET(struct dtype1_struct, ver), H5T_NATIVE_UINT); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "val", HOFFSET(struct dtype1_struct, val), H5T_NATIVE_DOUBLE); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "ma", HOFFSET(struct dtype1_struct, ma), H5T_NATIVE_DOUBLE); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "mi", HOFFSET(struct dtype1_struct, mi), H5T_NATIVE_DOUBLE); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "str_form", HOFFSET(dtype1_struct, str_form), str_id); - CHECK(ret, FAIL, "H5Tinsert"); - - ret = H5Tinsert(dtype1_id, "str_unit", HOFFSET(dtype1_struct, str_unit), str_id); - CHECK(ret, FAIL, "H5Tinsert"); - - /* Close string datatype */ - ret = H5Tclose(str_id); - CHECK(ret, FAIL, "H5Tclose"); - - /* Allocate space for the buffer to read data */ - rbuf = (dtype1_struct *)malloc(SPACE4_DIM_LARGE * sizeof(dtype1_struct)); - CHECK_PTR(rbuf, "malloc"); - - /* Create the small & large dataspaces to use */ - small_dspace_id = H5Screate_simple(SPACE4_RANK, small_dims, NULL); - CHECK(small_dspace_id, FAIL, "H5Screate_simple"); - - large_dspace_id = H5Screate_simple(SPACE4_RANK, large_dims, NULL); - CHECK(large_dspace_id, FAIL, "H5Screate_simple"); - - /* Create small & large dataspaces w/non-contiguous selections */ - small_select_dspace_id = H5Scopy(small_dspace_id); - CHECK(small_select_dspace_id, FAIL, "H5Scopy"); - - ret = H5Sselect_hyperslab(small_select_dspace_id, H5S_SELECT_SET, select_offset, select_stride, - small_select_count, select_block); - CHECK(ret, FAIL, "H5Sselect_hyperslab"); - - large_select_dspace_id = H5Scopy(large_dspace_id); - CHECK(large_select_dspace_id, FAIL, "H5Scopy"); - - ret = H5Sselect_hyperslab(large_select_dspace_id, H5S_SELECT_SET, select_offset, select_stride, - large_select_count, select_block); - CHECK(ret, FAIL, "H5Sselect_hyperslab"); - - /* Create a scalar dataspace */ - scalar_dspace_id = H5Screate(H5S_SCALAR); - CHECK(scalar_dspace_id, FAIL, "H5Screate"); - - /* Create dataset create property list and set the fill value */ - dcpl_id = H5Pcreate(H5P_DATASET_CREATE); - CHECK(dcpl_id, FAIL, "H5Pcreate"); - - ret = H5Pset_fill_value(dcpl_id, dtype1_id, &fill1); - CHECK(ret, FAIL, "H5Pset_fill_value"); - - /* Create the file */ - file_id = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - CHECK(file_id, FAIL, "H5Fcreate"); - - /* Create datasets with different storage layouts */ - for (layout = H5D_COMPACT; layout <= H5D_CHUNKED; layout++) { - unsigned compress_loop; /* # of times to run loop, for testing compressed chunked dataset */ - unsigned test_loop; /* Loop over datasets */ - -#ifdef H5_HAVE_FILTER_DEFLATE - if (layout == H5D_CHUNKED) - compress_loop = 2; - else -#endif /* H5_HAVE_FILTER_DEFLATE */ - compress_loop = 1; - - /* Loop over dataset operations */ - for (test_loop = 0; test_loop < compress_loop; test_loop++) { - hid_t tmp_dcpl_id; /* Temporary copy of the dataset creation property list */ - - /* Make a copy of the dataset creation property list */ - tmp_dcpl_id = H5Pcopy(dcpl_id); - CHECK(tmp_dcpl_id, FAIL, "H5Pcopy"); - - /* Layout specific actions */ - switch (layout) { - case H5D_COMPACT: - strcpy(dset_name1, "dataset1-compact"); - strcpy(dset_name2, "dataset2-compact"); - dset_dspace_id = small_dspace_id; - ret = H5Pset_layout(tmp_dcpl_id, H5D_COMPACT); - CHECK(ret, FAIL, "H5Pset_layout"); - break; - - case H5D_CONTIGUOUS: - strcpy(dset_name1, "dataset1-contig"); - strcpy(dset_name2, "dataset2-contig"); - dset_dspace_id = large_dspace_id; - break; - - case H5D_CHUNKED: { - hsize_t chunk_dims[1] = {SPACE4_DIM_LARGE / 4}; - - dset_dspace_id = large_dspace_id; - ret = H5Pset_chunk(tmp_dcpl_id, 1, chunk_dims); - CHECK(ret, FAIL, "H5Pset_chunk"); -#ifdef H5_HAVE_FILTER_DEFLATE - if (test_loop == 1) { - strcpy(dset_name1, "dataset1-chunked-compressed"); - strcpy(dset_name2, "dataset2-chunked-compressed"); - ret = H5Pset_deflate(tmp_dcpl_id, 3); - CHECK(ret, FAIL, "H5Pset_deflate"); - } /* end if */ - else { -#endif /* H5_HAVE_FILTER_DEFLATE */ - strcpy(dset_name1, "dataset1-chunked"); - strcpy(dset_name2, "dataset2-chunked"); -#ifdef H5_HAVE_FILTER_DEFLATE - } /* end else */ -#endif /* H5_HAVE_FILTER_DEFLATE */ - } break; - - case H5D_VIRTUAL: - assert(0 && "Invalid layout type!"); - break; - - case H5D_LAYOUT_ERROR: - case H5D_NLAYOUTS: - default: - assert(0 && "Unknown layout type!"); - break; - } /* end switch */ - - /* Create first data set with default setting - no space is allocated */ - dset_id = H5Dcreate2(file_id, dset_name1, dtype1_id, dset_dspace_id, H5P_DEFAULT, tmp_dcpl_id, - H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dcreate2"); - - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - - /* Create a second data set with space allocated and fill value written */ - ret = H5Pset_fill_time(tmp_dcpl_id, H5D_FILL_TIME_IFSET); - CHECK(ret, FAIL, "H5Pset_fill_time"); - - ret = H5Pset_alloc_time(tmp_dcpl_id, H5D_ALLOC_TIME_EARLY); - CHECK(ret, FAIL, "H5Pset_alloc_time"); - - dset_id = H5Dcreate2(file_id, dset_name2, dtype1_id, dset_dspace_id, H5P_DEFAULT, tmp_dcpl_id, - H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dcreate2"); - - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close temporary DCPL */ - ret = H5Pclose(tmp_dcpl_id); - CHECK(ret, FAIL, "H5Pclose"); - } /* end for */ - } /* end for */ - - ret = H5Fclose(file_id); - CHECK(ret, FAIL, "H5Fclose"); - - ret = H5Pclose(dcpl_id); - CHECK(ret, FAIL, "H5Pclose"); - - /* Change to the custom memory allocation routines for reading VL data */ - xfer_pid = H5Pcreate(H5P_DATASET_XFER); - CHECK(xfer_pid, FAIL, "H5Pcreate"); - - ret = H5Pset_vlen_mem_manager(xfer_pid, test_vltypes_alloc_custom, &mem_used, test_vltypes_free_custom, - &mem_used); - CHECK(ret, FAIL, "H5Pset_vlen_mem_manager"); - - /* Open the file to check data set value */ - file_id = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(file_id, FAIL, "H5Fopen"); - - /* Read empty datasets with different storage layouts */ - for (layout = H5D_COMPACT; layout <= H5D_CHUNKED; layout++) { - unsigned compress_loop; /* # of times to run loop, for testing compressed chunked dataset */ - unsigned test_loop; /* Loop over datasets */ - -#ifdef H5_HAVE_FILTER_DEFLATE - if (layout == H5D_CHUNKED) - compress_loop = 2; - else -#endif /* H5_HAVE_FILTER_DEFLATE */ - compress_loop = 1; - - /* Loop over dataset operations */ - for (test_loop = 0; test_loop < compress_loop; test_loop++) { - - /* Layout specific actions */ - switch (layout) { - case H5D_COMPACT: - strcpy(dset_name1, "dataset1-compact"); - strcpy(dset_name2, "dataset2-compact"); - dset_dspace_id = small_dspace_id; - dset_select_dspace_id = small_select_dspace_id; - dset_elmts = SPACE4_DIM_SMALL; - break; - - case H5D_CONTIGUOUS: - strcpy(dset_name1, "dataset1-contig"); - strcpy(dset_name2, "dataset2-contig"); - dset_dspace_id = large_dspace_id; - dset_select_dspace_id = large_select_dspace_id; - dset_elmts = SPACE4_DIM_LARGE; - break; - - case H5D_CHUNKED: -#ifdef H5_HAVE_FILTER_DEFLATE - if (test_loop == 1) { - strcpy(dset_name1, "dataset1-chunked-compressed"); - strcpy(dset_name2, "dataset2-chunked-compressed"); - } /* end if */ - else { -#endif /* H5_HAVE_FILTER_DEFLATE */ - strcpy(dset_name1, "dataset1-chunked"); - strcpy(dset_name2, "dataset2-chunked"); -#ifdef H5_HAVE_FILTER_DEFLATE - } /* end else */ -#endif /* H5_HAVE_FILTER_DEFLATE */ - dset_dspace_id = large_dspace_id; - dset_select_dspace_id = large_select_dspace_id; - dset_elmts = SPACE4_DIM_LARGE; - break; - - case H5D_VIRTUAL: - assert(0 && "Invalid layout type!"); - break; - - case H5D_LAYOUT_ERROR: - case H5D_NLAYOUTS: - default: - assert(0 && "Unknown layout type!"); - break; - } /* end switch */ - - /* Open first data set */ - dset_id = H5Dopen2(file_id, dset_name1, H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dopen2"); - - /* Read in the entire 'empty' dataset of fill value */ - ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Clear the read buffer */ - memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct)); - - /* Read in non-contiguous selection from 'empty' dataset of fill value */ - ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if ((i % 2) == select_offset[0]) { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig || - rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end else */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - - /* Open the second data set to check the value of data */ - dset_id = H5Dopen2(file_id, dset_name2, H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dopen2"); - - /* Read in the entire 'empty' dataset of fill value */ - ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Clear the read buffer */ - memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct)); - - /* Read in non-contiguous selection from 'empty' dataset of fill value */ - ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if ((i % 2) == select_offset[0]) { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig || - rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end else */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_select_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - } /* end for */ - } /* end for */ - - ret = H5Fclose(file_id); - CHECK(ret, FAIL, "H5Fclose"); - - /* Open the file to check data set value */ - file_id = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(file_id, FAIL, "H5Fopen"); - - /* Write one element & fill values to datasets with different storage layouts */ - for (layout = H5D_COMPACT; layout <= H5D_CHUNKED; layout++) { - unsigned compress_loop; /* # of times to run loop, for testing compressed chunked dataset */ - unsigned test_loop; /* Loop over datasets */ - -#ifdef H5_HAVE_FILTER_DEFLATE - if (layout == H5D_CHUNKED) - compress_loop = 2; - else -#endif /* H5_HAVE_FILTER_DEFLATE */ - compress_loop = 1; - - /* Loop over dataset operations */ - for (test_loop = 0; test_loop < compress_loop; test_loop++) { - - /* Layout specific actions */ - switch (layout) { - case H5D_COMPACT: - strcpy(dset_name1, "dataset1-compact"); - strcpy(dset_name2, "dataset2-compact"); - dset_dspace_id = small_dspace_id; - dset_select_dspace_id = small_select_dspace_id; - dset_elmts = SPACE4_DIM_SMALL; - break; - - case H5D_CONTIGUOUS: - strcpy(dset_name1, "dataset1-contig"); - strcpy(dset_name2, "dataset2-contig"); - dset_dspace_id = large_dspace_id; - dset_select_dspace_id = large_select_dspace_id; - dset_elmts = SPACE4_DIM_LARGE; - break; - - case H5D_CHUNKED: -#ifdef H5_HAVE_FILTER_DEFLATE - if (test_loop == 1) { - strcpy(dset_name1, "dataset1-chunked-compressed"); - strcpy(dset_name2, "dataset2-chunked-compressed"); - } /* end if */ - else { -#endif /* H5_HAVE_FILTER_DEFLATE */ - strcpy(dset_name1, "dataset1-chunked"); - strcpy(dset_name2, "dataset2-chunked"); -#ifdef H5_HAVE_FILTER_DEFLATE - } /* end else */ -#endif /* H5_HAVE_FILTER_DEFLATE */ - dset_dspace_id = large_dspace_id; - dset_select_dspace_id = large_select_dspace_id; - dset_elmts = SPACE4_DIM_LARGE; - break; - - case H5D_VIRTUAL: - assert(0 && "Invalid layout type!"); - break; - - case H5D_LAYOUT_ERROR: - case H5D_NLAYOUTS: - default: - assert(0 && "Unknown layout type!"); - break; - } /* end switch */ - - /* Copy the dataset's dataspace */ - single_dspace_id = H5Scopy(dset_dspace_id); - CHECK(single_dspace_id, FAIL, "H5Scopy"); - - /* Set a single element in the dataspace */ - ret = H5Sselect_hyperslab(single_dspace_id, H5S_SELECT_SET, single_offset, NULL, single_block, - NULL); - CHECK(ret, FAIL, "H5Sselect_hyperslab"); - - /* Open first data set */ - dset_id = H5Dopen2(file_id, dset_name1, H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dopen2"); - - /* Write one element in the dataset */ - ret = H5Dwrite(dset_id, dtype1_id, scalar_dspace_id, single_dspace_id, xfer_pid, &wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if (i == single_offset[0]) { - if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name || - strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 || - strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 || - strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 || - strcmp(rbuf[i].str_form, wdata.str_form) != 0 || - strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Clear the read buffer */ - memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct)); - - /* Read in non-contiguous selection from dataset */ - ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if (i == single_offset[0]) { - if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name || - strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 || - strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 || - strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 || - strcmp(rbuf[i].str_form, wdata.str_form) != 0 || - strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if ((i % 2) == select_offset[0]) { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || - strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig || - rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end else */ - } /* end else */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_select_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - - /* Open the second data set to check the value of data */ - dset_id = H5Dopen2(file_id, dset_name2, H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dopen2"); - - /* Write one element in the dataset */ - ret = H5Dwrite(dset_id, dtype1_id, scalar_dspace_id, single_dspace_id, xfer_pid, &wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - ret = H5Dread(dset_id, dtype1_id, dset_dspace_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if (i == single_offset[0]) { - if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name || - strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 || - strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 || - strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 || - strcmp(rbuf[i].str_form, wdata.str_form) != 0 || - strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - /* Clear the read buffer */ - memset(rbuf, 0, dset_elmts * sizeof(dtype1_struct)); - - /* Read in non-contiguous selection from dataset */ - ret = H5Dread(dset_id, dtype1_id, dset_select_dspace_id, dset_select_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Dread"); - - /* Compare data read in */ - for (i = 0; i < dset_elmts; i++) { - if (i == single_offset[0]) { - if (strcmp(rbuf[i].str_id, wdata.str_id) != 0 || rbuf[i].str_name || - strcmp(rbuf[i].str_desc, wdata.str_desc) != 0 || - strcmp(rbuf[i].str_orig, wdata.str_orig) != 0 || - strcmp(rbuf[i].str_stat, wdata.str_stat) != 0 || - strcmp(rbuf[i].str_form, wdata.str_form) != 0 || - strcmp(rbuf[i].str_unit, wdata.str_unit) != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i)=%d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if ((i % 2) == select_offset[0]) { - if (strcmp(rbuf[i].str_id, "foobar") != 0 || strcmp(rbuf[i].str_name, "") != 0 || - rbuf[i].str_desc || strcmp(rbuf[i].str_orig, "\0") != 0 || - strcmp(rbuf[i].str_stat, "dead") != 0 || - strcmp(rbuf[i].str_form, "liquid") != 0 || - strcmp(rbuf[i].str_unit, "meter") != 0) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end if */ - else { - if (rbuf[i].str_id || rbuf[i].str_name || rbuf[i].str_desc || rbuf[i].str_orig || - rbuf[i].str_stat || rbuf[i].str_form || rbuf[i].str_unit) { - TestErrPrintf("%d: VL data doesn't match!, index(i) = %d\n", __LINE__, (int)i); - continue; - } /* end if */ - } /* end else */ - } /* end else */ - } /* end for */ - - /* Release the space */ - ret = H5Treclaim(dtype1_id, dset_select_dspace_id, xfer_pid, rbuf); - CHECK(ret, FAIL, "H5Treclaim"); - - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - - /* Close the dataspace for the writes */ - ret = H5Sclose(single_dspace_id); - CHECK(ret, FAIL, "H5Sclose"); - } /* end for */ - } /* end for */ - - ret = H5Fclose(file_id); - CHECK(ret, FAIL, "H5Fclose"); - - /* Clean up rest of IDs */ - ret = H5Pclose(xfer_pid); - CHECK(ret, FAIL, "H5Pclose"); - - ret = H5Sclose(small_dspace_id); - CHECK(ret, FAIL, "H5Sclose"); - - ret = H5Sclose(large_dspace_id); - CHECK(ret, FAIL, "H5Sclose"); - - ret = H5Sclose(small_select_dspace_id); - CHECK(ret, FAIL, "H5Sclose"); - - ret = H5Sclose(large_select_dspace_id); - CHECK(ret, FAIL, "H5Sclose"); - - ret = H5Sclose(scalar_dspace_id); - CHECK(ret, FAIL, "H5Sclose"); - - ret = H5Tclose(dtype1_id); - CHECK(ret, FAIL, "H5Tclose"); - - /* Release buffer */ - free(rbuf); -} /* end test_vltypes_fill_value() */ - -/**************************************************************** -** -** test_vltypes(): Main VL datatype testing routine. -** -****************************************************************/ -void -test_vltypes(void) -{ - /* Output message about test being performed */ - MESSAGE(5, ("Testing Variable-Length Datatypes\n")); - - /* These next tests use the same file */ - test_vltypes_dataset_create(); /* Check dataset of VL when fill value - * won't be rewritten to it.*/ - test_vltypes_funcs(); /* Test functions with VL types */ - test_vltypes_vlen_atomic(); /* Test VL atomic datatypes */ - rewrite_vltypes_vlen_atomic(); /* Check VL memory leak */ - test_vltypes_vlen_compound(); /* Test VL compound datatypes */ - rewrite_vltypes_vlen_compound(); /* Check VL memory leak */ - test_vltypes_compound_vlen_atomic(); /* Test compound datatypes with VL atomic components */ - rewrite_vltypes_compound_vlen_atomic(); /* Check VL memory leak */ - test_vltypes_vlen_vlen_atomic(); /* Test VL datatype with VL atomic components */ - rewrite_longer_vltypes_vlen_vlen_atomic(); /*overwrite with VL data of longer sequence*/ - rewrite_shorter_vltypes_vlen_vlen_atomic(); /*overwrite with VL data of shorted sequence*/ - test_vltypes_compound_vlen_vlen(); /* Test compound datatypes with VL atomic components */ - test_vltypes_compound_vlstr(); /* Test data rewritten of nested VL data */ - test_vltypes_fill_value(); /* Test fill value for VL data */ -} /* test_vltypes() */ - -/*------------------------------------------------------------------------- - * Function: cleanup_vltypes - * - * Purpose: Cleanup temporary test files - * - * Return: none - *------------------------------------------------------------------------- - */ -void -cleanup_vltypes(void) -{ - H5Fdelete(FILENAME, H5P_DEFAULT); -} |