diff options
Diffstat (limited to 'test/dsets.c')
| -rw-r--r-- | test/dsets.c | 687 |
1 files changed, 483 insertions, 204 deletions
diff --git a/test/dsets.c b/test/dsets.c index 82766bf..7684de4 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -276,10 +276,16 @@ const char *FILENAME[] = { /* Shared global arrays */ #define DSET_DIM1 100 #define DSET_DIM2 200 -int points[DSET_DIM1][DSET_DIM2], check[DSET_DIM1][DSET_DIM2]; -double points_dbl[DSET_DIM1][DSET_DIM2], check_dbl[DSET_DIM1][DSET_DIM2]; -size_t count_nbytes_read = 0; -size_t count_nbytes_written = 0; +int **points = NULL; +int *points_data = NULL; +double **points_dbl = NULL; +double *points_dbl_data = NULL; +int **check = NULL; +int *check_data = NULL; +double **check_dbl = NULL; +double *check_dbl_data = NULL; +size_t count_nbytes_read = 0; +size_t count_nbytes_written = 0; /* Temporary buffer dimensions */ #define DSET_TMP_DIM1 50 @@ -515,7 +521,8 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) void *tconv_buf = NULL; int f = -1; haddr_t offset; - int rdata[DSET_DIM1][DSET_DIM2]; + int **rdata = NULL; + int *rdata_bytes = NULL; TESTING("simple I/O"); @@ -523,6 +530,14 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) if(HDstrcmp(env_h5_drvr, "split") && HDstrcmp(env_h5_drvr, "multi") && HDstrcmp(env_h5_drvr, "family")) { h5_fixname(FILENAME[4], fapl, filename, sizeof filename); + /* Set up data array */ + if(NULL == (rdata_bytes = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata = (int **)HDcalloc(DSET_DIM1, sizeof(rdata_bytes)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + rdata[i] = rdata_bytes + (i * DSET_DIM2); + /* Initialize the dataset */ for(i = n = 0; i < DSET_DIM1; i++) for(j = 0; j < DSET_DIM2; j++) @@ -552,7 +567,7 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) if(H5Dget_offset(dataset) != HADDR_UNDEF) goto error; /* Write the data to the dataset */ - if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, points) < 0) + if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, points_data) < 0) goto error; /* Test dataset address in file. Open the same file as a C file, seek @@ -561,7 +576,7 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) if((offset=H5Dget_offset(dataset))==HADDR_UNDEF) goto error; /* Read the dataset back */ - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, check_data) < 0) goto error; /* Check that the values read are the same as the values written */ @@ -585,7 +600,7 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) f = HDopen(filename, O_RDONLY); HDlseek(f, (off_t)offset, SEEK_SET); - if(HDread(f, rdata, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) + if(HDread(f, rdata_bytes, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) goto error; /* Check that the values read are the same as the values written */ @@ -604,6 +619,9 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) f = -1; HDfree(tconv_buf); + HDfree(rdata_bytes); + HDfree(rdata); + PASSED(); } /* end if */ else { @@ -624,8 +642,11 @@ error: if(H5Fclose(file) < 0) TEST_ERROR if(f > 0) HDclose(f); - if(tconv_buf) - HDfree(tconv_buf); + + HDfree(tconv_buf); + HDfree(rdata_bytes); + HDfree(rdata); + return FAIL; } /* end test_simple_io() */ @@ -648,7 +669,8 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) hsize_t dims[2]; int f = -1; haddr_t offset; - int rdata[DSET_DIM1][DSET_DIM2]; + int **rdata = NULL; + int *rdata_bytes = NULL; TESTING("dataset offset with user block"); @@ -656,6 +678,14 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) if(HDstrcmp(env_h5_drvr, "split") && HDstrcmp(env_h5_drvr, "multi") && HDstrcmp(env_h5_drvr, "family")) { h5_fixname(FILENAME[2], fapl, filename, sizeof filename); + /* Set up data array */ + if(NULL == (rdata_bytes = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata = (int **)HDcalloc(DSET_DIM1, sizeof(rdata_bytes)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + rdata[i] = rdata_bytes + (i * DSET_DIM2); + if((fcpl=H5Pcreate(H5P_FILE_CREATE)) < 0) goto error; if(H5Pset_userblock(fcpl, (hsize_t)USER_BLOCK) < 0) goto error; if(new_format) @@ -679,7 +709,7 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) space = -1; /* Write the data to the dataset */ - if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) + if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) goto error; /* Test dataset address in file. Open the same file as a C file, seek @@ -694,7 +724,7 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) f = HDopen(filename, O_RDONLY); HDlseek(f, (off_t)offset, SEEK_SET); - if(HDread(f, rdata, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) + if(HDread(f, rdata_bytes, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) goto error; /* Check that the values read are the same as the values written */ @@ -712,6 +742,9 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) HDclose(f); f = -1; + HDfree(rdata_bytes); + HDfree(rdata); + PASSED(); } /* end if */ else { @@ -732,6 +765,10 @@ error: if(H5Fclose(file) < 0) TEST_ERROR if(f > 0) HDclose(f); + + HDfree(rdata_bytes); + HDfree(rdata); + return FAIL; } /* end test_userblock_offset() */ @@ -1790,7 +1827,7 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, */ TESTING(" filters (uninitialized read)"); - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; for(i=0; i<(size_t)size[0]; i++) { @@ -1819,7 +1856,7 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, } } - if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points) < 0) + if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points_data) < 0) TEST_ERROR; if((*dset_size=H5Dget_storage_size(dataset))==0) TEST_ERROR; @@ -1837,25 +1874,25 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ if(H5Pset_filter_callback(write_dxpl, filter_cb_fail, NULL) < 0) TEST_ERROR; /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; } else { - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -1889,33 +1926,33 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, points[i][j] = (int)HDrandom (); } } - if(H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points) < 0) + if(H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points_data) < 0) TEST_ERROR; if(corrupted) { /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ if(H5Pset_filter_callback(write_dxpl, filter_cb_fail, NULL) < 0) TEST_ERROR; /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; } else { /* Read the dataset back and check it */ - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -1950,13 +1987,13 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status >= 0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ @@ -1964,12 +2001,12 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status >= 0) TEST_ERROR; } /* end if */ else { - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -2003,32 +2040,32 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, if(H5Sselect_hyperslab(sid, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) TEST_ERROR; /* (Use the "read" DXPL because partial I/O on corrupted data test needs to ignore errors during writing) */ - if(H5Dwrite (dataset, H5T_NATIVE_INT, sid, sid, dxpl, points) < 0) + if(H5Dwrite (dataset, H5T_NATIVE_INT, sid, sid, dxpl, points_data) < 0) TEST_ERROR; if(corrupted) { /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ if(H5Pset_filter_callback(write_dxpl, filter_cb_fail, NULL) < 0) TEST_ERROR; /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; } else { - if(H5Dread (dataset, H5T_NATIVE_INT, sid, sid, dxpl, check) < 0) + if(H5Dread (dataset, H5T_NATIVE_INT, sid, sid, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -2633,7 +2670,7 @@ test_missing_filter(hid_t file) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -2662,7 +2699,7 @@ test_missing_filter(hid_t file) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n",__LINE__); goto error; @@ -2723,7 +2760,7 @@ test_missing_filter(hid_t file) /* Read data (should fail, since deflate filter is missing) */ H5E_BEGIN_TRY { - ret = H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check); + ret = H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data); } H5E_END_TRY; if(ret>=0) { H5_FAILED(); @@ -4131,149 +4168,164 @@ test_nbit_int_size(hid_t file) hid_t dataspace, dataset, datatype, mem_datatype, dset_create_props; hsize_t dims[2], chunk_size[2]; hsize_t dset_size = 0; - int orig_data[DSET_DIM1][DSET_DIM2]; + int **orig = NULL; + int *orig_data = NULL; double power; int i, j; size_t precision, offset; TESTING(" nbit integer dataset size"); - /* Define dataset datatype (integer), and set precision, offset */ - if((datatype = H5Tcopy(H5T_NATIVE_INT)) < 0) { - H5_FAILED(); - HDprintf(" line %d: H5Tcopy failed\n",__LINE__); - goto error; - } /* end if */ + /* Set up data array */ + if(NULL == (orig_data = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (orig = (int **)HDcalloc(DSET_DIM1, sizeof(orig_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + orig[i] = orig_data + (i * DSET_DIM2); - precision = 16; /* precision includes sign bit */ - if(H5Tset_precision(datatype,precision)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_precision failed\n",__LINE__); - goto error; - } /* end if */ + /* Define dataset datatype (integer), and set precision, offset */ + if((datatype = H5Tcopy(H5T_NATIVE_INT)) < 0) { + H5_FAILED(); + HDprintf(" line %d: H5Tcopy failed\n",__LINE__); + goto error; + } - offset = 8; - if(H5Tset_offset(datatype,offset)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Tset_offset failed\n",__LINE__); - goto error; - } /* end if */ + precision = 16; /* precision includes sign bit */ + if(H5Tset_precision(datatype,precision)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_precision failed\n",__LINE__); + goto error; + } - /* Copy to memory datatype */ - if((mem_datatype = H5Tcopy(datatype)) < 0) { - H5_FAILED(); - HDprintf(" line %d: H5Tcopy failed\n",__LINE__); - goto error; - } /* end if */ + offset = 8; + if(H5Tset_offset(datatype,offset)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Tset_offset failed\n",__LINE__); + goto error; + } - /* Set order of dataset datatype */ - if(H5Tset_order(datatype, H5T_ORDER_BE)<0) { + /* Copy to memory datatype */ + if((mem_datatype = H5Tcopy(datatype)) < 0) { H5_FAILED(); - HDprintf(" line %d: H5Pset_order failed\n",__LINE__); - goto error; - } /* end if */ + HDprintf(" line %d: H5Tcopy failed\n",__LINE__); + goto error; + } - if(H5Tset_size(datatype, 4)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_size failed\n",__LINE__); - goto error; - } /* end if */ + /* Set order of dataset datatype */ + if(H5Tset_order(datatype, H5T_ORDER_BE)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_order failed\n",__LINE__); + goto error; + } - /* Initiliaze data buffer with random data within correct range - * corresponding to the memory datatype's precision and offset. - */ - for (i=0; i < DSET_DIM1; i++) - for (j=0; j < DSET_DIM2; j++) { - power = HDpow(2.0F, (double)(precision-1)); - orig_data[i][j] = HDrandom() % (int)power << offset; - } /* end for */ + if(H5Tset_size(datatype, 4)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_size failed\n",__LINE__); + goto error; + } + + /* Initiliaze data buffer with random data within correct range + * corresponding to the memory datatype's precision and offset. + */ + for (i=0; i < DSET_DIM1; i++) + for (j=0; j < DSET_DIM2; j++) { + power = HDpow(2.0F, (double)(precision-1)); + orig[i][j] = HDrandom() % (int)power << offset; + } - /* Describe the dataspace. */ - dims[0] = DSET_DIM1; - dims[1] = DSET_DIM2; - if((dataspace = H5Screate_simple (2, dims, NULL))<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pcreate failed\n",__LINE__); - goto error; - } /* end if */ + /* Describe the dataspace. */ + dims[0] = DSET_DIM1; + dims[1] = DSET_DIM2; + if((dataspace = H5Screate_simple(2, dims, NULL))<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pcreate failed\n",__LINE__); + goto error; + } - /* - * Set the dataset creation property list to specify the chunks - */ - chunk_size[0] = DSET_DIM1/10; - chunk_size[1] = DSET_DIM2/10; - if((dset_create_props = H5Pcreate (H5P_DATASET_CREATE))<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pcreate failed\n",__LINE__); - goto error; - } /* end if */ + /* + * Set the dataset creation property list to specify the chunks + */ + chunk_size[0] = DSET_DIM1/10; + chunk_size[1] = DSET_DIM2/10; + if((dset_create_props = H5Pcreate(H5P_DATASET_CREATE))<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pcreate failed\n",__LINE__); + goto error; + } - if(H5Pset_chunk (dset_create_props, 2, chunk_size)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_chunk failed\n",__LINE__); - goto error; - } /* end if */ + if(H5Pset_chunk(dset_create_props, 2, chunk_size)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_chunk failed\n",__LINE__); + goto error; + } - /* - * Set for n-bit compression - */ - if(H5Pset_nbit (dset_create_props)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_nbit failed\n",__LINE__); - goto error; - } /* end if */ + /* + * Set for n-bit compression + */ + if(H5Pset_nbit(dset_create_props)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_nbit failed\n",__LINE__); + goto error; + } - /* - * Create a new dataset within the file. - */ - if((dataset = H5Dcreate2 (file, DSET_NBIT_INT_SIZE_NAME, datatype, + /* + * Create a new dataset within the file. + */ + if((dataset = H5Dcreate2(file, DSET_NBIT_INT_SIZE_NAME, datatype, dataspace, H5P_DEFAULT, dset_create_props, H5P_DEFAULT))<0) { - H5_FAILED(); - HDprintf(" line %d: H5dwrite failed\n",__LINE__); - goto error; - } /* end if */ + H5_FAILED(); + HDprintf(" line %d: H5dwrite failed\n",__LINE__); + goto error; + } - /* - * Write the array to the file. - */ - if(H5Dwrite (dataset, mem_datatype, H5S_ALL, H5S_ALL, - H5P_DEFAULT, orig_data)<0) { - H5_FAILED(); - HDprintf(" Line %d: H5Dwrite failed\n",__LINE__); - goto error; - } /* end if */ + /* + * Write the array to the file. + */ + if(H5Dwrite(dataset, mem_datatype, H5S_ALL, H5S_ALL, H5P_DEFAULT, orig_data)<0) { + H5_FAILED(); + HDprintf(" Line %d: H5Dwrite failed\n",__LINE__); + goto error; + } - /* - * Get the precision of the data type - */ - if((precision = H5Tget_precision(datatype)) == 0) { - H5_FAILED(); - HDprintf(" Line %d: wrong precision size: %zu\n",__LINE__, precision); - goto error; - } /* end if */ + /* + * Get the precision of the data type + */ + if((precision = H5Tget_precision(datatype)) == 0) { + H5_FAILED(); + HDprintf(" Line %d: wrong precision size: %zu\n",__LINE__, precision); + goto error; + } - /* - * The size of the dataset after compression should around 2 * DSET_DIM1 * DSET_DIM2 - */ - if((dset_size = H5Dget_storage_size(dataset)) < DSET_DIM1*DSET_DIM2*(precision/8) || - dset_size > DSET_DIM1*DSET_DIM2*(precision/8) + 1*KB) { - H5_FAILED(); - HDfprintf(stdout, " Line %d: wrong dataset size: %Hu\n",__LINE__, dset_size); - goto error; - } /* end if */ + /* + * The size of the dataset after compression should around 2 * DSET_DIM1 * DSET_DIM2 + */ + if((dset_size = H5Dget_storage_size(dataset)) < DSET_DIM1*DSET_DIM2*(precision/8) || + dset_size > DSET_DIM1*DSET_DIM2*(precision/8) + 1*KB) { + H5_FAILED(); + HDfprintf(stdout, " Line %d: wrong dataset size: %Hu\n",__LINE__, dset_size); + goto error; + } - H5Tclose (datatype); - H5Tclose (mem_datatype); - H5Dclose (dataset); - H5Sclose (dataspace); - H5Pclose (dset_create_props); + H5Tclose(datatype); + H5Tclose(mem_datatype); + H5Dclose(dataset); + H5Sclose(dataspace); + H5Pclose(dset_create_props); + + HDfree(orig); + HDfree(orig_data); PASSED(); - return SUCCEED; + return SUCCEED; + error: + HDfree(orig); + HDfree(orig_data); + return FAIL; } /* end test_nbit_int_size() */ @@ -4299,13 +4351,22 @@ test_nbit_flt_size(hid_t file) hid_t dataspace, dataset, datatype, dset_create_props; hsize_t dims[2], chunk_size[2]; hsize_t dset_size = 0; - float orig_data[DSET_DIM1][DSET_DIM2]; + float **orig = NULL; + float *orig_data = NULL; int i, j; size_t precision, offset; size_t spos, epos, esize, mpos, msize; TESTING(" nbit floating-number dataset size"); + /* Set up data array */ + if(NULL == (orig_data = (float *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(float)))) + TEST_ERROR; + if(NULL == (orig = (float **)HDcalloc(DSET_DIM1, sizeof(orig_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + orig[i] = orig_data + (i * DSET_DIM2); + /* Define floating-point type for dataset *------------------------------------------------------------------- * size=4 byte, precision=16 bits, offset=8 bits, @@ -4384,7 +4445,7 @@ test_nbit_flt_size(hid_t file) */ for (i=0; i < DSET_DIM1; i++) for (j=0; j < DSET_DIM2; j++) - orig_data[i][j] = (float)(HDrandom() % 1234567) / 2; + orig[i][j] = (float)(HDrandom() % 1234567) / 2; /* Describe the dataspace. */ @@ -4469,8 +4530,14 @@ test_nbit_flt_size(hid_t file) PASSED(); + HDfree(orig); + HDfree(orig_data); + return SUCCEED; error: + HDfree(orig); + HDfree(orig_data); + return FAIL; } /* end test_nbit_flt_size() */ @@ -5464,7 +5531,7 @@ test_can_apply(hid_t file) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -5492,7 +5559,7 @@ test_can_apply(hid_t file) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n",__LINE__); goto error; @@ -5623,7 +5690,7 @@ test_can_apply2(hid_t file) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -5651,7 +5718,7 @@ test_can_apply2(hid_t file) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n",__LINE__); goto error; @@ -5992,7 +6059,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -6014,7 +6081,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_dbl) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_dbl_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -6077,7 +6144,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n", __LINE__); goto error; @@ -6127,7 +6194,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_dbl) < 0) { + if(H5Dread(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_dbl_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n", __LINE__); goto error; @@ -6860,10 +6927,12 @@ test_missing_chunk(hid_t file) hsize_t hs_start2[2], hs_stride2[2], hs_count2[2], hs_block2[2];/* Hyperslab setting */ /* Buffers for reading/writing dataset */ - int wdata[MISSING_CHUNK_DIM], - rdata[MISSING_CHUNK_DIM]; - int wdata2[MISSING_CHUNK_DIM][MISSING_CHUNK_DIM], - rdata2[MISSING_CHUNK_DIM][MISSING_CHUNK_DIM]; + int *wdata = NULL; + int *rdata = NULL; + int **wdata2 = NULL; + int **rdata2 = NULL; + int *wdata2_bytes = NULL; + int *rdata2_bytes = NULL; /* Setting for 1-D dataset */ hsize_t dsize=100, dmax=H5S_UNLIMITED; @@ -6880,6 +6949,26 @@ test_missing_chunk(hid_t file) TESTING("Read dataset with unwritten chunk & undefined fill value"); + /* Set up data arrays */ + if(NULL == (wdata = (int *)HDcalloc(MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata = (int *)HDcalloc(MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + + if(NULL == (wdata2_bytes = (int *)HDcalloc(MISSING_CHUNK_DIM * MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (wdata2 = (int **)HDcalloc(MISSING_CHUNK_DIM, sizeof(wdata2_bytes)))) + TEST_ERROR; + for (i = 0; i < MISSING_CHUNK_DIM; i++) + wdata2[i] = wdata2_bytes + (i * MISSING_CHUNK_DIM); + + if(NULL == (rdata2_bytes = (int *)HDcalloc(MISSING_CHUNK_DIM * MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata2 = (int **)HDcalloc(MISSING_CHUNK_DIM, sizeof(rdata2_bytes)))) + TEST_ERROR; + for (i = 0; i < MISSING_CHUNK_DIM; i++) + rdata2[i] = rdata2_bytes + (i * MISSING_CHUNK_DIM); + /* Get the file's file access property list */ if((fapl = H5Fget_access_plist(file)) < 0) TEST_ERROR; @@ -6897,10 +6986,10 @@ test_missing_chunk(hid_t file) /* Initialize data for 2-D dataset */ for(i = 0; i < MISSING_CHUNK_DIM; i++) { - for(j = 0; j < MISSING_CHUNK_DIM; j++) { - wdata2[i][j] = (int)(j + (i * MISSING_CHUNK_DIM)); - rdata2[i][j] = 911; - } + for(j = 0; j < MISSING_CHUNK_DIM; j++) { + wdata2[i][j] = (int)(j + (i * MISSING_CHUNK_DIM)); + rdata2[i][j] = 911; + } } /* end for */ /* Create dataspace */ @@ -6958,11 +7047,11 @@ test_missing_chunk(hid_t file) /* Write selected data to the datasets */ if(H5Dwrite(d, H5T_NATIVE_INT, s, s, H5P_DEFAULT, wdata) < 0) TEST_ERROR; - if(H5Dwrite(did2, H5T_NATIVE_INT, sid2, sid2, H5P_DEFAULT, wdata2) < 0) TEST_ERROR; + if(H5Dwrite(did2, H5T_NATIVE_INT, sid2, sid2, H5P_DEFAULT, wdata2_bytes) < 0) TEST_ERROR; /* Read all data from the datasets */ if(H5Dread(d, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0) TEST_ERROR; - if(H5Dread(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2) < 0) TEST_ERROR; + if(H5Dread(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2_bytes) < 0) TEST_ERROR; /* Validata values read for the 1-D dataset */ for(u=0; u<MISSING_CHUNK_DIM; u++) { @@ -7009,6 +7098,13 @@ test_missing_chunk(hid_t file) if(H5Dclose(d) < 0) TEST_ERROR; if(H5Dclose(did2) < 0) TEST_ERROR; + HDfree(rdata); + HDfree(wdata); + HDfree(rdata2); + HDfree(wdata2); + HDfree(rdata2_bytes); + HDfree(wdata2_bytes); + PASSED(); return SUCCEED; @@ -7023,6 +7119,14 @@ error: H5Sclose(s); H5Sclose(sid2); } H5E_END_TRY; + + HDfree(rdata); + HDfree(wdata); + HDfree(rdata2); + HDfree(wdata2); + HDfree(rdata2_bytes); + HDfree(wdata2_bytes); + return FAIL; } /* end test_missing_chunk() */ @@ -8081,9 +8185,13 @@ test_big_chunks_bypass_cache(hid_t fapl) hsize_t t_count[2], t_stride[2], t_offset[2], t_block[2]; /* Setting for hyperslab (2-D) */ /* Buffers for reading and writing data (1-D) */ int *wdata = NULL, *rdata1 = NULL, *rdata2 = NULL; - /* Buffer for reading and writing data (2-D) */ - static int t_wdata[BYPASS_CHUNK_DIM/2][BYPASS_CHUNK_DIM/2], t_rdata1[BYPASS_DIM][BYPASS_DIM], - t_rdata2[BYPASS_CHUNK_DIM/2][BYPASS_CHUNK_DIM/2]; + /* Buffers for reading and writing data (2-D) */ + int **t_wdata = NULL; + int **t_rdata1 = NULL; + int **t_rdata2 = NULL; + int *t_wdata_bytes = NULL; + int *t_rdata1_bytes = NULL; + int *t_rdata2_bytes = NULL; int i, j; /* Local index variables */ H5F_libver_t low; /* File format low bound */ H5D_chunk_index_t idx_type, t_idx_type; /* Dataset chunk index types */ @@ -8093,6 +8201,29 @@ test_big_chunks_bypass_cache(hid_t fapl) h5_fixname(FILENAME[9], fapl, filename, sizeof filename); + /* Set up data arrays */ + if(NULL == (t_wdata_bytes = (int *)HDcalloc((BYPASS_CHUNK_DIM/2) * (BYPASS_CHUNK_DIM/2), sizeof(int)))) + TEST_ERROR; + if(NULL == (t_wdata = (int **)HDcalloc((BYPASS_CHUNK_DIM/2), sizeof(t_wdata_bytes)))) + TEST_ERROR; + for (i = 0; i < (BYPASS_CHUNK_DIM/2); i++) + t_wdata[i] = t_wdata_bytes + (i * (BYPASS_CHUNK_DIM/2)); + + if(NULL == (t_rdata1_bytes = (int *)HDcalloc(BYPASS_DIM * BYPASS_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (t_rdata1 = (int **)HDcalloc(BYPASS_DIM, sizeof(t_rdata1_bytes)))) + TEST_ERROR; + for (i = 0; i < BYPASS_DIM; i++) + t_rdata1[i] = t_rdata1_bytes + (i * BYPASS_DIM); + + if(NULL == (t_rdata2_bytes = (int *)HDcalloc((BYPASS_CHUNK_DIM/2) * (BYPASS_CHUNK_DIM/2), sizeof(int)))) + TEST_ERROR; + if(NULL == (t_rdata2 = (int **)HDcalloc((BYPASS_CHUNK_DIM/2), sizeof(t_rdata2_bytes)))) + TEST_ERROR; + for (i = 0; i < (BYPASS_CHUNK_DIM/2); i++) + t_rdata2[i] = t_rdata2_bytes + (i * (BYPASS_CHUNK_DIM/2)); + + /* Check if we are using the latest version of the format */ if(H5Pget_libver_bounds(fapl, &low, NULL) < 0) FAIL_STACK_ERROR @@ -8181,8 +8312,8 @@ test_big_chunks_bypass_cache(hid_t fapl) /* Initialize data to write for 2-D dataset */ for(i = 0; i < BYPASS_CHUNK_DIM / 2; i++) - for(j = 0; j < BYPASS_CHUNK_DIM / 2; j++) - t_wdata[i][j] = j; + for(j = 0; j < BYPASS_CHUNK_DIM / 2; j++) + t_wdata[i][j] = j; /* Set up memory space for the 2-D dataset */ mid = H5Screate_simple(2, t_block, NULL); @@ -8191,7 +8322,7 @@ test_big_chunks_bypass_cache(hid_t fapl) /* This write should go through the cache because fill value is used. */ if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, sid, H5P_DEFAULT, wdata) < 0) FAIL_STACK_ERROR - if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata) < 0) + if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata_bytes) < 0) FAIL_STACK_ERROR /* Close the first 1-D & 2-D datasets */ @@ -8206,7 +8337,7 @@ test_big_chunks_bypass_cache(hid_t fapl) * chunk is bigger than the cache size and it isn't allocated on disk. */ if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata1) < 0) FAIL_STACK_ERROR - if(H5Dread(t_dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, t_rdata1) < 0) + if(H5Dread(t_dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, t_rdata1_bytes) < 0) FAIL_STACK_ERROR /* Verify data for the first 1-D dataset */ @@ -8237,8 +8368,8 @@ test_big_chunks_bypass_cache(hid_t fapl) for(i = BYPASS_CHUNK_DIM / 2; i < BYPASS_DIM; i++) for(j = BYPASS_CHUNK_DIM / 2; j < BYPASS_DIM; j++) if(t_rdata1[i][j] != fvalue) { - HDprintf(" Read different values than written in the 2nd chunk.\n"); - HDprintf(" At line %d and index (%d, %d), t_rdata1 = %d. It should be %d.\n", + HDprintf(" Read different values than written in the 2nd chunk.\n"); + HDprintf(" At line %d and index (%d, %d), t_rdata1 = %d. It should be %d.\n", __LINE__, i, j, t_rdata1[i][j], fvalue); TEST_ERROR } /* end if */ @@ -8262,7 +8393,7 @@ test_big_chunks_bypass_cache(hid_t fapl) /* Write to the second 1-D & 2-D dataset */ if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, sid, H5P_DEFAULT, wdata) < 0) FAIL_STACK_ERROR - if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata) < 0) + if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata_bytes) < 0) FAIL_STACK_ERROR /* Close the second 1-D & 2-D dataset */ @@ -8278,7 +8409,7 @@ test_big_chunks_bypass_cache(hid_t fapl) * the cache size. */ if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, sid, H5P_DEFAULT, rdata2) < 0) FAIL_STACK_ERROR - if(H5Dread(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_rdata2) < 0) + if(H5Dread(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_rdata2_bytes) < 0) FAIL_STACK_ERROR /* Verify data for the second 1-D dataset */ @@ -8313,6 +8444,12 @@ test_big_chunks_bypass_cache(hid_t fapl) HDfree(wdata); HDfree(rdata1); HDfree(rdata2); + HDfree(t_wdata); + HDfree(t_rdata1); + HDfree(t_rdata2); + HDfree(t_wdata_bytes); + HDfree(t_rdata1_bytes); + HDfree(t_rdata2_bytes); PASSED(); return SUCCEED; @@ -8328,12 +8465,17 @@ error: H5Sclose(t_sid); H5Fclose(fid); } H5E_END_TRY; - if(wdata) - HDfree(wdata); - if(rdata1) - HDfree(rdata1); - if(rdata2) - HDfree(rdata2); + + HDfree(wdata); + HDfree(rdata1); + HDfree(rdata2); + HDfree(t_wdata); + HDfree(t_rdata1); + HDfree(t_rdata2); + HDfree(t_wdata_bytes); + HDfree(t_rdata1_bytes); + HDfree(t_rdata2_bytes); + return FAIL; } /* end test_big_chunks_bypass_cache() */ @@ -8835,13 +8977,33 @@ test_chunk_fast_bug1(hid_t fapl) hid_t dsid = -1; /* Dataset ID */ hsize_t dim[2], max_dim[2], chunk_dim[2]; /* Dataset and chunk dimensions */ H5D_alloc_time_t alloc_time; /* Storage allocation time */ - static unsigned wbuf[40][20], rbuf[40][20]; /* Element written/read */ + + unsigned **wbuf = NULL; + unsigned **rbuf = NULL; + unsigned *wbuf_bytes = NULL; + unsigned *rbuf_bytes = NULL; + unsigned i, j; /* Local index variables */ TESTING("datasets w/extensible array chunk indexing bug"); h5_fixname(FILENAME[10], fapl, filename, sizeof filename); + /* Set up data array */ + if(NULL == (wbuf_bytes = (unsigned *)HDcalloc(40 * 20, sizeof(unsigned)))) + TEST_ERROR; + if(NULL == (wbuf = (unsigned **)HDcalloc(40, sizeof(wbuf_bytes)))) + TEST_ERROR; + for (i = 0; i < 40; i++) + wbuf[i] = wbuf_bytes + (i * 20); + + if(NULL == (rbuf_bytes = (unsigned *)HDcalloc(40 * 20, sizeof(unsigned)))) + TEST_ERROR; + if(NULL == (rbuf = (unsigned **)HDcalloc(40, sizeof(rbuf_bytes)))) + TEST_ERROR; + for (i = 0; i < 40; i++) + rbuf[i] = rbuf_bytes + (i * 20); + /* Initialize write buffer */ for(i=0; i<40; i++) for(j=0; j<20; j++) @@ -8875,7 +9037,7 @@ test_chunk_fast_bug1(hid_t fapl) FAIL_STACK_ERROR /* Write buffer to dataset */ - if(H5Dwrite(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, &wbuf) < 0) + if(H5Dwrite(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, wbuf_bytes) < 0) FAIL_STACK_ERROR /* Close everything */ @@ -8885,7 +9047,7 @@ test_chunk_fast_bug1(hid_t fapl) if((dsid = H5Dopen2(fid, "dset", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR /* Read from dataset */ - if(H5Dread(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, &rbuf) < 0) + if(H5Dread(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, rbuf_bytes) < 0) FAIL_STACK_ERROR /* Verify read data */ @@ -8902,6 +9064,11 @@ test_chunk_fast_bug1(hid_t fapl) if(H5Sclose(sid) < 0) FAIL_STACK_ERROR + HDfree(wbuf); + HDfree(rbuf); + HDfree(wbuf_bytes); + HDfree(rbuf_bytes); + PASSED(); return SUCCEED; @@ -8912,6 +9079,12 @@ error: H5Sclose(sid); H5Fclose(fid); } H5E_END_TRY; + + HDfree(wbuf); + HDfree(rbuf); + HDfree(wbuf_bytes); + HDfree(rbuf_bytes); + return FAIL; } /* end test_chunk_fast_bug1() */ @@ -9436,13 +9609,19 @@ test_fixed_array(hid_t fapl) int *rbuf_big = NULL; /* read buffer for big dataset */ const hsize_t chunk_dim2[2] = {4, 3}; /* Chunk dimensions */ - int chunks[12][6]; /* # of chunks for dataset dimensions */ - int chunks_big[125][20]; /* # of chunks for big dataset dimensions */ + + int **chunks = NULL; /* # of chunks for dataset dimensions */ + int **chunks_big = NULL; /* # of chunks for big dataset dimensions */ + int *chunks_bytes = NULL; + int *chunks_big_bytes = NULL; + int chunk_row; /* chunk row index */ int chunk_col; /* chunk column index */ - hsize_t coord[POINTS][2]; /* datdaset coordinates */ - hsize_t coord_big[POINTS_BIG][2]; /* big dataset coordinates */ + hsize_t **coord = NULL; /* datdaset coordinates */ + hsize_t **coord_big = NULL; /* big datdaset coordinates */ + hsize_t *coord_bytes = NULL; + hsize_t *coord_big_bytes = NULL; H5D_chunk_index_t idx_type; /* Dataset chunk index type */ H5F_libver_t low, high; /* File format bounds */ @@ -9465,6 +9644,35 @@ test_fixed_array(hid_t fapl) h5_fixname(FILENAME[12], fapl, filename, sizeof filename); + /* Set up 2D data arrays */ + if(NULL == (chunks_bytes = (int *)HDcalloc(12 * 6, sizeof(int)))) + TEST_ERROR; + if(NULL == (chunks = (int **)HDcalloc(12, sizeof(chunks_bytes)))) + TEST_ERROR; + for (i = 0; i < 12; i++) + chunks[i] = chunks_bytes + (i * 6); + + if(NULL == (chunks_big_bytes = (int *)HDcalloc(125 * 20, sizeof(int)))) + TEST_ERROR; + if(NULL == (chunks_big = (int **)HDcalloc(125, sizeof(chunks_big_bytes)))) + TEST_ERROR; + for (i = 0; i < 125; i++) + chunks_big[i] = chunks_big_bytes + (i * 20); + + if(NULL == (coord_bytes = (hsize_t *)HDcalloc(POINTS * 2, sizeof(hsize_t)))) + TEST_ERROR; + if(NULL == (coord = (hsize_t **)HDcalloc(POINTS, sizeof(coord_bytes)))) + TEST_ERROR; + for (i = 0; i < POINTS; i++) + coord[i] = coord_bytes + (i * 2); + + if(NULL == (coord_big_bytes = (hsize_t *)HDcalloc(POINTS_BIG * 2, sizeof(hsize_t)))) + TEST_ERROR; + if(NULL == (coord_big = (hsize_t **)HDcalloc(POINTS_BIG, sizeof(coord_big_bytes)))) + TEST_ERROR; + for (i = 0; i < POINTS_BIG; i++) + coord_big[i] = coord_big_bytes + (i * 2); + /* Check if we are using the latest version of the format */ if(H5Pget_libver_bounds(fapl, &low, &high) < 0) FAIL_STACK_ERROR @@ -9564,7 +9772,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for writing */ - if(H5Sselect_elements(sid_max, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) + if(H5Sselect_elements(sid_max, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Write into dataset */ @@ -9605,7 +9813,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for writing */ - if(H5Sselect_elements(sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) + if(H5Sselect_elements(sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Write into dataset */ @@ -9667,7 +9875,7 @@ test_fixed_array(hid_t fapl) if((big_mem_id = H5Screate_simple(1, msize_big, NULL)) < 0) TEST_ERROR; /* Select the random points for writing */ - if(H5Sselect_elements(sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big) < 0) + if(H5Sselect_elements(sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big_bytes) < 0) TEST_ERROR; /* Write into dataset */ @@ -9689,7 +9897,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for reading */ - if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) TEST_ERROR; + if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Read from dataset */ if(H5Dread(dsid, H5T_NATIVE_INT, mem_id, sid, H5P_DEFAULT, rbuf) < 0) TEST_ERROR; @@ -9717,7 +9925,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for reading */ - if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) TEST_ERROR; + if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Read from dataset */ if(H5Dread(dsid, H5T_NATIVE_INT, mem_id, sid, H5P_DEFAULT, rbuf) < 0) TEST_ERROR; @@ -9744,7 +9952,7 @@ test_fixed_array(hid_t fapl) if((big_mem_id = H5Screate_simple(1, msize_big, NULL)) < 0) TEST_ERROR; /* Select the random points for reading */ - if(H5Sselect_elements (sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big) < 0) TEST_ERROR; + if(H5Sselect_elements (sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big_bytes) < 0) TEST_ERROR; /* Read from dataset */ if(H5Dread(dsid_big, H5T_NATIVE_INT, big_mem_id, sid_big, H5P_DEFAULT, rbuf_big) < 0) TEST_ERROR; @@ -9786,6 +9994,15 @@ test_fixed_array(hid_t fapl) HDfree(wbuf_big); HDfree(rbuf_big); + HDfree(chunks); + HDfree(chunks_big); + HDfree(coord); + HDfree(coord_big); + HDfree(chunks_bytes); + HDfree(chunks_big_bytes); + HDfree(coord_bytes); + HDfree(coord_big_bytes); + PASSED(); return SUCCEED; @@ -9797,10 +10014,18 @@ error: H5Sclose(mem_id); H5Fclose(fid); } H5E_END_TRY; - if(wbuf_big) - HDfree(wbuf_big); - if(rbuf_big) - HDfree(rbuf_big); + + HDfree(wbuf_big); + HDfree(rbuf_big); + HDfree(chunks); + HDfree(chunks_big); + HDfree(coord); + HDfree(coord_big); + HDfree(chunks_bytes); + HDfree(chunks_big_bytes); + HDfree(coord_bytes); + HDfree(coord_big_bytes); + return FAIL; } /* end test_fixed_array() */ @@ -13287,6 +13512,7 @@ main(void) int nerrors = 0; const char *envval; hbool_t contig_addr_vfd; /* Whether VFD used has a contigous address space */ + int i; /* Don't run this test using certain file drivers */ envval = HDgetenv("HDF5_DRIVER"); @@ -13299,6 +13525,39 @@ main(void) /* Set the random # seed */ HDsrandom((unsigned)HDtime(NULL)); + /* Initialize global arrays */ + /* points */ + if(NULL == (points_data = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (points = (int **)HDcalloc(DSET_DIM1, sizeof(points_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + points[i] = points_data + (i * DSET_DIM2); + + /* check */ + if(NULL == (check_data = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (check = (int **)HDcalloc(DSET_DIM1, sizeof(check_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + check[i] = check_data + (i * DSET_DIM2); + + /* points_dbl */ + if(NULL == (points_dbl_data = (double *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(double)))) + TEST_ERROR; + if(NULL == (points_dbl = (double **)HDcalloc(DSET_DIM1, sizeof(points_dbl_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + points_dbl[i] = points_dbl_data + (i * DSET_DIM2); + + /* check_dbl */ + if(NULL == (check_dbl_data = (double *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(double)))) + TEST_ERROR; + if(NULL == (check_dbl = (double **)HDcalloc(DSET_DIM1, sizeof(check_dbl_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + check_dbl[i] = check_dbl_data + (i * DSET_DIM2); + /* Testing setup */ h5_reset(); fapl = h5_fileaccess(); @@ -13484,9 +13743,29 @@ main(void) #endif /* H5_HAVE_FILTER_SZIP */ h5_cleanup(FILENAME, fapl); + HDfree(points); + HDfree(check); + HDfree(points_dbl); + HDfree(check_dbl); + + HDfree(points_data); + HDfree(check_data); + HDfree(points_dbl_data); + HDfree(check_dbl_data); + HDexit(EXIT_SUCCESS); error: + HDfree(points); + HDfree(check); + HDfree(points_dbl); + HDfree(check_dbl); + + HDfree(points_data); + HDfree(check_data); + HDfree(points_dbl_data); + HDfree(check_dbl_data); + nerrors = MAX(1, nerrors); HDprintf("***** %d DATASET TEST%s FAILED! *****\n", nerrors, 1 == nerrors ? "" : "S"); |