diff options
Diffstat (limited to 'test/trefer.c')
| -rw-r--r-- | test/trefer.c | 361 |
1 files changed, 333 insertions, 28 deletions
diff --git a/test/trefer.c b/test/trefer.c index fd97239..4bf5c17 100644 --- a/test/trefer.c +++ b/test/trefer.c @@ -24,6 +24,7 @@ #define FILE_REF_PARAM "trefer_param.h5" #define FILE_REF_OBJ "trefer_obj.h5" #define FILE_REF_VL_OBJ "trefer_vl_obj.h5" +#define FILE_REF_CMPND_OBJ "trefer_cmpnd_obj.h5" #define FILE_REF_REG "trefer_reg.h5" #define FILE_REF_REG_1D "trefer_reg_1d.h5" #define FILE_REF_OBJ_DEL "trefer_obj_del.h5" @@ -56,6 +57,15 @@ typedef struct s1_t { float c; } s1_t; +/* Compound datatype with reference */ +typedef struct s2_t { + H5R_ref_t ref0; /* reference */ + H5R_ref_t ref1; /* reference */ + H5R_ref_t ref2; /* reference */ + H5R_ref_t ref3; /* reference */ + unsigned int dim_idx; /* dimension index of the dataset */ +} s2_t; + #define GROUPNAME "/group" #define GROUPNAME2 "group2" #define GROUPNAME3 "group3" @@ -87,12 +97,12 @@ test_reference_params(void) hid_t aapl_id; /* Attribute access property list */ hid_t dapl_id; /* Dataset access property list */ hsize_t dims1[] = {SPACE1_DIM1}; - H5R_ref_t *wbuf, /* buffer to write to disk */ + H5R_ref_t *wbuf, /* buffer to write to disk */ *rbuf, /* buffer read from disk */ *tbuf; /* temp. buffer read from disk */ unsigned *obuf; H5R_type_t type; /* Reference type */ - unsigned int i; /* Counters */ + unsigned int i; /* Counters */ const char *write_comment = "Foo!"; /* Comments for group */ hid_t ret_id; /* Generic hid_t return value */ ssize_t name_size; /* Size of reference name */ @@ -320,10 +330,10 @@ test_reference_obj(void) hid_t tid1; /* Datatype ID */ hsize_t dims1[] = {SPACE1_DIM1}; hid_t dapl_id; /* Dataset access property list */ - H5R_ref_t *wbuf, /* buffer to write to disk */ + H5R_ref_t *wbuf, /* buffer to write to disk */ *rbuf; /* buffer read from disk */ unsigned *ibuf, *obuf; - unsigned i, j; /* Counters */ + unsigned i, j; /* Counters */ H5O_type_t obj_type; /* Object type */ herr_t ret; /* Generic return value */ @@ -806,6 +816,297 @@ test_reference_vlen_obj(void) /**************************************************************** ** +** test_reference_cmpnd_obj(): Test basic H5R (reference) object reference +** within a compound type. +** Tests references to various kinds of objects +** +****************************************************************/ +static void +test_reference_cmpnd_obj(void) +{ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset, /* Dataset ID */ + dset2; /* Dereferenced dataset ID */ + hid_t group; /* Group ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Datatype ID */ + hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t cmpnd_dims[] = {1}; + hid_t dapl_id; /* Dataset access property list */ + H5R_ref_t *wbuf, /* buffer to write to disk */ + *rbuf; /* buffer read from disk */ + unsigned *ibuf, *obuf; + unsigned i, j; /* Counters */ + H5O_type_t obj_type; /* Object type */ + herr_t ret; /* Generic return value */ + s2_t cmpnd_wbuf, cmpnd_rbuf; + + /* Output message about test being performed */ + MESSAGE(5, ("Testing Object Reference Functions within compound type\n")); + + /* Allocate write & read buffers */ + wbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); + rbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); + ibuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); + obuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); + + for (i = 0; i < SPACE1_DIM1; i++) + obuf[i] = i * 3; + + /* Create file */ + fid1 = H5Fcreate(FILE_REF_CMPND_OBJ, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + CHECK(fid1, H5I_INVALID_HID, "H5Fcreate"); + + /* Create dataspace for datasets */ + sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); + CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple"); + + /* Create dataset access property list */ + dapl_id = H5Pcreate(H5P_DATASET_ACCESS); + CHECK(dapl_id, H5I_INVALID_HID, "H5Pcreate"); + + /* Create a group */ + group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(group, H5I_INVALID_HID, "H5Gcreate2"); + + /* Create a dataset (inside Group1) */ + dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); + + /* Write selection to disk */ + ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obuf); + CHECK(ret, FAIL, "H5Dwrite"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Create another dataset (inside Group1) */ + dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dataset, FAIL, "H5Dcreate2"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close disk dataspace */ + ret = H5Sclose(sid1); + CHECK(ret, FAIL, "H5Sclose"); + + /* Create a datatype to refer to */ + tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t)); + CHECK(tid1, H5I_INVALID_HID, "H5Tcreate"); + + /* Insert fields */ + ret = H5Tinsert(tid1, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT); + CHECK(ret, FAIL, "H5Tinsert"); + + /* Save datatype for later */ + ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Tcommit2"); + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close group */ + ret = H5Gclose(group); + CHECK(ret, FAIL, "H5Gclose"); + + /* Create compound type */ + tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s2_t)); + CHECK(tid1, H5I_INVALID_HID, "H5Tcreate"); + + /* Insert fields */ + ret = H5Tinsert(tid1, "ref0", HOFFSET(s2_t, ref0), H5T_STD_REF); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "ref1", HOFFSET(s2_t, ref1), H5T_STD_REF); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "ref2", HOFFSET(s2_t, ref2), H5T_STD_REF); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "ref3", HOFFSET(s2_t, ref3), H5T_STD_REF); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "dim_idx", HOFFSET(s2_t, dim_idx), H5T_NATIVE_INT); + CHECK(ret, FAIL, "H5Tinsert"); + + /* Create dataspace for datasets */ + sid1 = H5Screate_simple(SPACE1_RANK, cmpnd_dims, NULL); + CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple"); + + /* Create a dataset */ + dataset = H5Dcreate2(fid1, "Dataset3", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); + + /* Create reference to dataset */ + ret = H5Rcreate_object(fid1, "/Group1/Dataset1", H5P_DEFAULT, &wbuf[0]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); + + /* Create reference to dataset */ + ret = H5Rcreate_object(fid1, "/Group1/Dataset2", H5P_DEFAULT, &wbuf[1]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[1], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); + + /* Create reference to group */ + ret = H5Rcreate_object(fid1, "/Group1", H5P_DEFAULT, &wbuf[2]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[2], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3"); + + /* Create reference to named datatype */ + ret = H5Rcreate_object(fid1, "/Group1/Datatype1", H5P_DEFAULT, &wbuf[3]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[3], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3"); + + /* Store dimensions */ + cmpnd_wbuf.ref0 = wbuf[0]; + cmpnd_wbuf.ref1 = wbuf[1]; + cmpnd_wbuf.ref2 = wbuf[2]; + cmpnd_wbuf.ref3 = wbuf[3]; + cmpnd_wbuf.dim_idx = SPACE1_DIM1; + + /* Write selection to disk */ + ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &cmpnd_wbuf); + CHECK(ret, FAIL, "H5Dwrite"); + + /* Close disk dataspace */ + ret = H5Sclose(sid1); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close file */ + ret = H5Fclose(fid1); + CHECK(ret, FAIL, "H5Fclose"); + + /* Re-open the file */ + fid1 = H5Fopen(FILE_REF_CMPND_OBJ, H5F_ACC_RDWR, H5P_DEFAULT); + CHECK(fid1, H5I_INVALID_HID, "H5Fopen"); + + /* Open the dataset */ + dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT); + CHECK(dataset, H5I_INVALID_HID, "H5Dopen2"); + + tid1 = H5Dget_type(dataset); + CHECK(tid1, H5I_INVALID_HID, "H5Dget_type"); + + /* Read selection from disk */ + ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &cmpnd_rbuf); + CHECK(ret, FAIL, "H5Dread"); + + VERIFY(cmpnd_rbuf.dim_idx, SPACE1_DIM1, "H5Dread"); + rbuf[0] = cmpnd_rbuf.ref0; + rbuf[1] = cmpnd_rbuf.ref1; + rbuf[2] = cmpnd_rbuf.ref2; + rbuf[3] = cmpnd_rbuf.ref3; + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Open dataset object */ + dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id); + CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); + + /* Check information in referenced dataset */ + sid1 = H5Dget_space(dset2); + CHECK(sid1, H5I_INVALID_HID, "H5Dget_space"); + + ret = (int)H5Sget_simple_extent_npoints(sid1); + VERIFY(ret, SPACE1_DIM1, "H5Sget_simple_extent_npoints"); + + /* Read from disk */ + ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, ibuf); + CHECK(ret, FAIL, "H5Dread"); + + for(i = 0; i < SPACE1_DIM1; i++) + VERIFY(ibuf[i], i * 3, "Data"); + + /* Close dereferenced Dataset */ + ret = H5Dclose(dset2); + CHECK(ret, FAIL, "H5Dclose"); + + /* Open group object. GAPL isn't supported yet. But it's harmless to pass in */ + group = H5Ropen_object(&rbuf[2], H5P_DEFAULT, H5P_DEFAULT); + CHECK(group, H5I_INVALID_HID, "H5Ropen_object"); + + /* Close group */ + ret = H5Gclose(group); + CHECK(ret, FAIL, "H5Gclose"); + + /* Open datatype object. TAPL isn't supported yet. But it's harmless to pass in */ + tid1 = H5Ropen_object(&rbuf[3], H5P_DEFAULT, H5P_DEFAULT); + CHECK(tid1, H5I_INVALID_HID, "H5Ropen_object"); + + /* Verify correct datatype */ + { + H5T_class_t tclass; + + tclass = H5Tget_class(tid1); + VERIFY(tclass, H5T_COMPOUND, "H5Tget_class"); + + ret= H5Tget_nmembers(tid1); + VERIFY(ret, 3, "H5Tget_nmembers"); + } + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close dataset access property list */ + ret = H5Pclose(dapl_id); + CHECK(ret, FAIL, "H5Pclose"); + + /* Close file */ + ret = H5Fclose(fid1); + CHECK(ret, FAIL, "H5Fclose"); + + /* Destroy references */ + for(j = 0; j < SPACE1_DIM1; j++) { + ret = H5Rdestroy(&wbuf[j]); + CHECK(ret, FAIL, "H5Rdestroy"); + } + for(j = 0; j < SPACE1_DIM1; j++) { + ret = H5Rdestroy(&rbuf[j]); + CHECK(ret, FAIL, "H5Rdestroy"); + } + + /* Free memory buffers */ + HDfree(wbuf); + HDfree(rbuf); + HDfree(ibuf); + HDfree(obuf); +} /* test_reference_cmpnd_obj() */ + +/**************************************************************** +** ** test_reference_region(): Test basic H5R (reference) object reference code. ** Tests references to various kinds of objects ** @@ -834,11 +1135,11 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) hsize_t *coords; /* Coordinate buffer */ hsize_t low[SPACE2_RANK]; /* Selection bounds */ hsize_t high[SPACE2_RANK]; /* Selection bounds */ - H5R_ref_t *wbuf, /* buffer to write to disk */ - *rbuf; /* buffer read from disk */ + H5R_ref_t *wbuf = NULL, /* buffer to write to disk */ + *rbuf = NULL; /* buffer read from disk */ H5R_ref_t nvrbuf[3]={{{{0}}},{{{101}}},{{{255}}}}; /* buffer with non-valid refs */ - uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ - *drbuf; /* Buffer for reading numeric data from disk */ + uint8_t *dwbuf = NULL, /* Buffer for writing numeric data to disk */ + *drbuf = NULL; /* Buffer for reading numeric data from disk */ uint8_t *tu8; /* Temporary pointer to uint8 data */ H5O_type_t obj_type; /* Type of object */ int i, j; /* Counters */ @@ -1236,13 +1537,14 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) CHECK(ret, FAIL, "H5Rdestroy"); } - /* Free memory buffers */ - HDfree(wbuf); - HDfree(rbuf); - HDfree(dwbuf); - HDfree(drbuf); - } + + /* Free memory buffers */ + HDfree(wbuf); + HDfree(rbuf); + HDfree(dwbuf); + HDfree(drbuf); + } /* test_reference_region() */ /**************************************************************** @@ -1275,10 +1577,10 @@ test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high) hsize_t *coords; /* Coordinate buffer */ hsize_t low[SPACE3_RANK]; /* Selection bounds */ hsize_t high[SPACE3_RANK]; /* Selection bounds */ - H5R_ref_t *wbuf, /* buffer to write to disk */ - *rbuf; /* buffer read from disk */ - uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ - *drbuf; /* Buffer for reading numeric data from disk */ + H5R_ref_t *wbuf = NULL, /* buffer to write to disk */ + *rbuf = NULL; /* buffer read from disk */ + uint8_t *dwbuf = NULL, /* Buffer for writing numeric data to disk */ + *drbuf = NULL; /* Buffer for reading numeric data from disk */ uint8_t *tu8; /* Temporary pointer to uint8 data */ H5O_type_t obj_type; /* Object type */ int i; /* Counter */ @@ -1575,13 +1877,14 @@ test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high) CHECK(ret, FAIL, "H5Rdestroy"); } - /* Free memory buffers */ - HDfree(wbuf); - HDfree(rbuf); - HDfree(dwbuf); - HDfree(drbuf); - } + + /* Free memory buffers */ + HDfree(wbuf); + HDfree(rbuf); + HDfree(dwbuf); + HDfree(drbuf); + } /* test_reference_region_1D() */ /**************************************************************** @@ -2417,10 +2720,10 @@ test_reference_compat_conv(void) hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ hsize_t coord1[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */ - hobj_ref_t *wbuf_obj; /* Buffer to write to disk */ - H5R_ref_t *rbuf_obj; /* Buffer read from disk */ - hdset_reg_ref_t *wbuf_reg; /* Buffer to write to disk */ - H5R_ref_t *rbuf_reg; /* Buffer read from disk */ + hobj_ref_t *wbuf_obj = NULL; /* Buffer to write to disk */ + H5R_ref_t *rbuf_obj = NULL; /* Buffer read from disk */ + hdset_reg_ref_t *wbuf_reg = NULL; /* Buffer to write to disk */ + H5R_ref_t *rbuf_reg = NULL; /* Buffer read from disk */ H5O_type_t obj_type; /* Object type */ herr_t ret; /* Generic return value */ unsigned int i; /* Counter */ @@ -3131,6 +3434,7 @@ test_reference(void) test_reference_params(); /* Test for correct parameter checking */ test_reference_obj(); /* Test basic H5R object reference code */ test_reference_vlen_obj(); /* Test reference within vlen */ + test_reference_cmpnd_obj(); /* Test reference within compound type */ /* Loop through all the combinations of low/high version bounds */ for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { @@ -3177,6 +3481,7 @@ cleanup_reference(void) HDremove(FILE_REF_PARAM); HDremove(FILE_REF_OBJ); HDremove(FILE_REF_VL_OBJ); + HDremove(FILE_REF_CMPND_OBJ); HDremove(FILE_REF_REG); HDremove(FILE_REF_REG_1D); HDremove(FILE_REF_OBJ_DEL); |