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-rw-r--r--testpar/t_2Gio.c2758
1 files changed, 1355 insertions, 1403 deletions
diff --git a/testpar/t_2Gio.c b/testpar/t_2Gio.c
index d44c7c7..3e92f18 100644
--- a/testpar/t_2Gio.c
+++ b/testpar/t_2Gio.c
@@ -32,7 +32,6 @@
#include "mpi.h"
-
/* For this test, we don't want to inherit the RANK definition
* from testphdf5.h. We'll define MAX_RANK to accomodate 3D arrays
* and use that definition rather than RANK.
@@ -57,8 +56,8 @@
#endif
#ifndef PATH_MAX
-#define PATH_MAX 512
-#endif /* !PATH_MAX */
+#define PATH_MAX 512
+#endif /* !PATH_MAX */
/* global variables */
int dim0;
@@ -66,25 +65,22 @@ int dim1;
int dim2;
int chunkdim0;
int chunkdim1;
-int nerrors = 0; /* errors count */
-int ndatasets = 300; /* number of datasets to create*/
-int ngroups = 512; /* number of groups to create in root
- * group. */
-int facc_type = FACC_MPIO; /*Test file access type */
+int nerrors = 0; /* errors count */
+int ndatasets = 300; /* number of datasets to create*/
+int ngroups = 512; /* number of groups to create in root
+ * group. */
+int facc_type = FACC_MPIO; /*Test file access type */
int dxfer_coll_type = DXFER_COLLECTIVE_IO;
-H5E_auto2_t old_func; /* previous error handler */
-void *old_client_data; /* previous error handler arg.*/
+H5E_auto2_t old_func; /* previous error handler */
+void * old_client_data; /* previous error handler arg.*/
-#define NFILENAME 3
+#define NFILENAME 3
#define PARATESTFILE filenames[0]
-const char *FILENAME[NFILENAME]={
- "ParaTest",
- "Hugefile",
- NULL};
-char filenames[NFILENAME][PATH_MAX];
-hid_t fapl; /* file access property list */
-MPI_Comm test_comm = MPI_COMM_WORLD;
+const char *FILENAME[NFILENAME] = {"ParaTest", "Hugefile", NULL};
+char filenames[NFILENAME][PATH_MAX];
+hid_t fapl; /* file access property list */
+MPI_Comm test_comm = MPI_COMM_WORLD;
// static int enable_error_stack = 0; /* enable error stack; disable=0 enable=1 */
// static const char *TestProgName = NULL;
@@ -95,7 +91,6 @@ MPI_Comm test_comm = MPI_COMM_WORLD;
* The following are various utility routines used by the tests.
*/
-
/*
* Show command usage
*/
@@ -103,15 +98,15 @@ static void
usage(void)
{
HDprintf(" [-r] [-w] [-m<n_datasets>] [-n<n_groups>] "
- "[-o] [-f <prefix>] [-d <dim0> <dim1>]\n");
+ "[-o] [-f <prefix>] [-d <dim0> <dim1>]\n");
HDprintf("\t-m<n_datasets>"
- "\tset number of datasets for the multiple dataset test\n");
+ "\tset number of datasets for the multiple dataset test\n");
HDprintf("\t-n<n_groups>"
- "\tset number of groups for the multiple group test\n");
+ "\tset number of groups for the multiple group test\n");
HDprintf("\t-f <prefix>\tfilename prefix\n");
HDprintf("\t-2\t\tuse Split-file together with MPIO\n");
- HDprintf("\t-d <factor0> <factor1>\tdataset dimensions factors. Defaults (%d,%d)\n",
- BIG_X_FACTOR, BIG_Y_FACTOR);
+ HDprintf("\t-d <factor0> <factor1>\tdataset dimensions factors. Defaults (%d,%d)\n", BIG_X_FACTOR,
+ BIG_Y_FACTOR);
HDprintf("\t-c <dim0> <dim1>\tdataset chunk dimensions. Defaults (dim0/10,dim1/10)\n");
HDprintf("\n");
}
@@ -122,124 +117,127 @@ usage(void)
static int
parse_options(int argc, char **argv)
{
- int mpi_size, mpi_rank; /* mpi variables */
+ int mpi_size, mpi_rank; /* mpi variables */
MPI_Comm_size(test_comm, &mpi_size);
MPI_Comm_rank(test_comm, &mpi_rank);
/* setup default chunk-size. Make sure sizes are > 0 */
- chunkdim0 = (dim0+9)/10;
- chunkdim1 = (dim1+9)/10;
+ chunkdim0 = (dim0 + 9) / 10;
+ chunkdim1 = (dim1 + 9) / 10;
- while (--argc){
- if (**(++argv) != '-'){
- break;
- }else{
- switch(*(*argv+1)){
- case 'm': ndatasets = atoi((*argv+1)+1);
- if (ndatasets < 0){
- nerrors++;
- return(1);
- }
+ while (--argc) {
+ if (**(++argv) != '-') {
break;
- case 'n': ngroups = atoi((*argv+1)+1);
- if (ngroups < 0){
- nerrors++;
- return(1);
- }
- break;
- case 'f': if (--argc < 1) {
- nerrors++;
- return(1);
- }
- if (**(++argv) == '-') {
- nerrors++;
- return(1);
- }
- paraprefix = *argv;
- break;
- case 'i': /* Collective MPI-IO access with independent IO */
- dxfer_coll_type = DXFER_INDEPENDENT_IO;
- break;
- case '2': /* Use the split-file driver with MPIO access */
- /* Can use $HDF5_METAPREFIX to define the */
- /* meta-file-prefix. */
- facc_type = FACC_MPIO | FACC_SPLIT;
- break;
- case 'd': /* dimensizes */
- if (--argc < 2){
- nerrors++;
- return(1);
- }
- dim0 = atoi(*(++argv))*mpi_size;
- argc--;
- dim1 = atoi(*(++argv))*mpi_size;
- /* set default chunkdim sizes too */
- chunkdim0 = (dim0+9)/10;
- chunkdim1 = (dim1+9)/10;
- break;
- case 'c': /* chunk dimensions */
- if (--argc < 2){
+ }
+ else {
+ switch (*(*argv + 1)) {
+ case 'm':
+ ndatasets = atoi((*argv + 1) + 1);
+ if (ndatasets < 0) {
+ nerrors++;
+ return (1);
+ }
+ break;
+ case 'n':
+ ngroups = atoi((*argv + 1) + 1);
+ if (ngroups < 0) {
+ nerrors++;
+ return (1);
+ }
+ break;
+ case 'f':
+ if (--argc < 1) {
+ nerrors++;
+ return (1);
+ }
+ if (**(++argv) == '-') {
+ nerrors++;
+ return (1);
+ }
+ paraprefix = *argv;
+ break;
+ case 'i': /* Collective MPI-IO access with independent IO */
+ dxfer_coll_type = DXFER_INDEPENDENT_IO;
+ break;
+ case '2': /* Use the split-file driver with MPIO access */
+ /* Can use $HDF5_METAPREFIX to define the */
+ /* meta-file-prefix. */
+ facc_type = FACC_MPIO | FACC_SPLIT;
+ break;
+ case 'd': /* dimensizes */
+ if (--argc < 2) {
+ nerrors++;
+ return (1);
+ }
+ dim0 = atoi(*(++argv)) * mpi_size;
+ argc--;
+ dim1 = atoi(*(++argv)) * mpi_size;
+ /* set default chunkdim sizes too */
+ chunkdim0 = (dim0 + 9) / 10;
+ chunkdim1 = (dim1 + 9) / 10;
+ break;
+ case 'c': /* chunk dimensions */
+ if (--argc < 2) {
+ nerrors++;
+ return (1);
+ }
+ chunkdim0 = atoi(*(++argv));
+ argc--;
+ chunkdim1 = atoi(*(++argv));
+ break;
+ case 'h': /* print help message--return with nerrors set */
+ return (1);
+ default:
+ HDprintf("Illegal option(%s)\n", *argv);
nerrors++;
- return(1);
- }
- chunkdim0 = atoi(*(++argv));
- argc--;
- chunkdim1 = atoi(*(++argv));
- break;
- case 'h': /* print help message--return with nerrors set */
- return(1);
- default: HDprintf("Illegal option(%s)\n", *argv);
- nerrors++;
- return(1);
+ return (1);
}
}
} /*while*/
/* check validity of dimension and chunk sizes */
- if (dim0 <= 0 || dim1 <= 0){
+ if (dim0 <= 0 || dim1 <= 0) {
HDprintf("Illegal dim sizes (%d, %d)\n", dim0, dim1);
nerrors++;
- return(1);
+ return (1);
}
- if (chunkdim0 <= 0 || chunkdim1 <= 0){
+ if (chunkdim0 <= 0 || chunkdim1 <= 0) {
HDprintf("Illegal chunkdim sizes (%d, %d)\n", chunkdim0, chunkdim1);
nerrors++;
- return(1);
+ return (1);
}
/* Make sure datasets can be divided into equal portions by the processes */
- if ((dim0 % mpi_size) || (dim1 % mpi_size)){
+ if ((dim0 % mpi_size) || (dim1 % mpi_size)) {
if (MAINPROCESS)
- HDprintf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n",
- dim0, dim1, mpi_size);
+ HDprintf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n", dim0, dim1, mpi_size);
nerrors++;
- return(1);
+ return (1);
}
/* compose the test filenames */
{
int i, n;
- n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */
+ n = sizeof(FILENAME) / sizeof(FILENAME[0]) - 1; /* exclude the NULL */
- for (i=0; i < n; i++)
- if (h5_fixname(FILENAME[i],fapl,filenames[i],sizeof(filenames[i]))
- == NULL){
+ for (i = 0; i < n; i++)
+ if (h5_fixname(FILENAME[i], fapl, filenames[i], sizeof(filenames[i])) == NULL) {
HDprintf("h5_fixname failed\n");
nerrors++;
- return(1);
+ return (1);
}
if (MAINPROCESS) {
- HDprintf("Test filenames are:\n");
- for (i=0; i < n; i++)
- HDprintf(" %s\n", filenames[i]);
- }
+ HDprintf("Test filenames are:\n");
+ for (i = 0; i < n; i++)
+ HDprintf(" %s\n", filenames[i]);
+ }
}
- return(0);
+ return (0);
}
/*
@@ -248,20 +246,20 @@ parse_options(int argc, char **argv)
hid_t
create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
{
- hid_t ret_pl = -1;
- herr_t ret; /* generic return value */
- int mpi_rank; /* mpi variables */
+ hid_t ret_pl = -1;
+ herr_t ret; /* generic return value */
+ int mpi_rank; /* mpi variables */
/* need the rank for error checking macros */
MPI_Comm_rank(test_comm, &mpi_rank);
- ret_pl = H5Pcreate (H5P_FILE_ACCESS);
+ ret_pl = H5Pcreate(H5P_FILE_ACCESS);
VRFY((ret_pl >= 0), "H5P_FILE_ACCESS");
if (l_facc_type == FACC_DEFAULT)
return (ret_pl);
- if (l_facc_type == FACC_MPIO){
+ if (l_facc_type == FACC_MPIO) {
/* set Parallel access with communicator */
ret = H5Pset_fapl_mpio(ret_pl, comm, info);
VRFY((ret >= 0), "");
@@ -269,33 +267,32 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
VRFY((ret >= 0), "");
ret = H5Pset_coll_metadata_write(ret_pl, TRUE);
VRFY((ret >= 0), "");
- return(ret_pl);
+ return (ret_pl);
}
- if (l_facc_type == (FACC_MPIO | FACC_SPLIT)){
+ if (l_facc_type == (FACC_MPIO | FACC_SPLIT)) {
hid_t mpio_pl;
- mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
+ mpio_pl = H5Pcreate(H5P_FILE_ACCESS);
VRFY((mpio_pl >= 0), "");
/* set Parallel access with communicator */
ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
VRFY((ret >= 0), "");
/* setup file access template */
- ret_pl = H5Pcreate (H5P_FILE_ACCESS);
+ ret_pl = H5Pcreate(H5P_FILE_ACCESS);
VRFY((ret_pl >= 0), "");
/* set Parallel access with communicator */
ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
H5Pclose(mpio_pl);
- return(ret_pl);
+ return (ret_pl);
}
/* unknown file access types */
return (ret_pl);
}
-
/*
* Setup the dimensions of the hyperslab.
* Two modes--by rows or by columns.
@@ -306,227 +303,222 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
* ZCOL same as BYCOL except process 0 gets 0 columns
*/
static void
-slab_set(int mpi_rank, int mpi_size, hsize_t start[], hsize_t count[],
- hsize_t stride[], hsize_t block[], int mode)
+slab_set(int mpi_rank, int mpi_size, hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[],
+ int mode)
{
switch (mode) {
- case BYROW:
- /* Each process takes a slabs of rows. */
- block[0] = (hsize_t)dim0 / (hsize_t)mpi_size;
- block[1] = (hsize_t)dim1;
- stride[0] = block[0];
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = (hsize_t)mpi_rank * block[0];
- start[1] = 0;
- if (VERBOSE_MED)
- HDprintf("slab_set BYROW\n");
- break;
- case BYCOL:
- /* Each process takes a block of columns. */
- block[0] = (hsize_t)dim0;
- block[1] = (hsize_t)dim1 / (hsize_t)mpi_size;
- stride[0] = block[0];
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = 0;
- start[1] = (hsize_t)mpi_rank * block[1];
- if (VERBOSE_MED)
- HDprintf("slab_set BYCOL\n");
- break;
- case ZROW:
- /* Similar to BYROW except process 0 gets 0 row */
- block[0] = (hsize_t)(mpi_rank ? dim0 / mpi_size : 0);
- block[1] = (hsize_t)dim1;
- stride[0] = (mpi_rank ? block[0] : 1); /* avoid setting stride to 0 */
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[0] : 0);
- start[1] = 0;
- if (VERBOSE_MED)
- HDprintf("slab_set ZROW\n");
- break;
- case ZCOL:
- /* Similar to BYCOL except process 0 gets 0 column */
- block[0] = (hsize_t)dim0;
- block[1] = (hsize_t)(mpi_rank ? dim1 / mpi_size : 0);
- stride[0] = block[0];
- stride[1] = (mpi_rank ? block[1] : 1); /* avoid setting stride to 0 */
- count[0] = 1;
- count[1] = 1;
- start[0] = 0;
- start[1] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[1] : 0);
- if (VERBOSE_MED)
- HDprintf("slab_set ZCOL\n");
- break;
- default:
- /* Unknown mode. Set it to cover the whole dataset. */
- HDprintf("unknown slab_set mode (%d)\n", mode);
- block[0] = (hsize_t)dim0;
- block[1] = (hsize_t)dim1;
- stride[0] = block[0];
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = 0;
- start[1] = 0;
- if (VERBOSE_MED)
- HDprintf("slab_set wholeset\n");
- break;
+ case BYROW:
+ /* Each process takes a slabs of rows. */
+ block[0] = (hsize_t)dim0 / (hsize_t)mpi_size;
+ block[1] = (hsize_t)dim1;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = (hsize_t)mpi_rank * block[0];
+ start[1] = 0;
+ if (VERBOSE_MED)
+ HDprintf("slab_set BYROW\n");
+ break;
+ case BYCOL:
+ /* Each process takes a block of columns. */
+ block[0] = (hsize_t)dim0;
+ block[1] = (hsize_t)dim1 / (hsize_t)mpi_size;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = (hsize_t)mpi_rank * block[1];
+ if (VERBOSE_MED)
+ HDprintf("slab_set BYCOL\n");
+ break;
+ case ZROW:
+ /* Similar to BYROW except process 0 gets 0 row */
+ block[0] = (hsize_t)(mpi_rank ? dim0 / mpi_size : 0);
+ block[1] = (hsize_t)dim1;
+ stride[0] = (mpi_rank ? block[0] : 1); /* avoid setting stride to 0 */
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[0] : 0);
+ start[1] = 0;
+ if (VERBOSE_MED)
+ HDprintf("slab_set ZROW\n");
+ break;
+ case ZCOL:
+ /* Similar to BYCOL except process 0 gets 0 column */
+ block[0] = (hsize_t)dim0;
+ block[1] = (hsize_t)(mpi_rank ? dim1 / mpi_size : 0);
+ stride[0] = block[0];
+ stride[1] = (mpi_rank ? block[1] : 1); /* avoid setting stride to 0 */
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[1] : 0);
+ if (VERBOSE_MED)
+ HDprintf("slab_set ZCOL\n");
+ break;
+ default:
+ /* Unknown mode. Set it to cover the whole dataset. */
+ HDprintf("unknown slab_set mode (%d)\n", mode);
+ block[0] = (hsize_t)dim0;
+ block[1] = (hsize_t)dim1;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = 0;
+ if (VERBOSE_MED)
+ HDprintf("slab_set wholeset\n");
+ break;
}
if (VERBOSE_MED) {
- HDprintf(
- "start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
- (unsigned long) start[0], (unsigned long) start[1],
- (unsigned long) count[0], (unsigned long) count[1],
- (unsigned long) stride[0], (unsigned long) stride[1],
- (unsigned long) block[0], (unsigned long) block[1],
- (unsigned long) (block[0] * block[1] * count[0] * count[1]));
+ HDprintf("start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total "
+ "datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0],
+ (unsigned long)count[1], (unsigned long)stride[0], (unsigned long)stride[1],
+ (unsigned long)block[0], (unsigned long)block[1],
+ (unsigned long)(block[0] * block[1] * count[0] * count[1]));
}
}
/*
* Setup the coordinates for point selection.
*/
-void point_set(hsize_t start[],
- hsize_t count[],
- hsize_t stride[],
- hsize_t block[],
- size_t num_points,
- hsize_t coords[],
- int order)
+void
+point_set(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[], size_t num_points,
+ hsize_t coords[], int order)
{
- hsize_t i,j, k = 0, m ,n, s1 ,s2;
+ hsize_t i, j, k = 0, m, n, s1, s2;
// HDcompile_assert(MAX_RANK == 3);
HDcompile_assert(MAX_RANK == 2);
- if(OUT_OF_ORDER == order)
+ if (OUT_OF_ORDER == order)
k = (num_points * MAX_RANK) - 1;
- else if(IN_ORDER == order)
+ else if (IN_ORDER == order)
k = 0;
s1 = start[0];
s2 = start[1];
- for(i = 0 ; i < count[0]; i++)
- for(j = 0 ; j < count[1]; j++)
- for(m = 0 ; m < block[0]; m++)
- for(n = 0 ; n < block[1]; n++)
- if(OUT_OF_ORDER == order) {
+ for (i = 0; i < count[0]; i++)
+ for (j = 0; j < count[1]; j++)
+ for (m = 0; m < block[0]; m++)
+ for (n = 0; n < block[1]; n++)
+ if (OUT_OF_ORDER == order) {
coords[k--] = s2 + (stride[1] * j) + n;
coords[k--] = s1 + (stride[0] * i) + m;
}
- else if(IN_ORDER == order) {
+ else if (IN_ORDER == order) {
coords[k++] = s1 + stride[0] * i + m;
coords[k++] = s2 + stride[1] * j + n;
}
- if(VERBOSE_MED) {
- HDprintf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total datapoints=%lu\n",
- (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
- (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
- (unsigned long)(block[0] * block[1] * count[0] * count[1]));
+ if (VERBOSE_MED) {
+ HDprintf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total "
+ "datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0],
+ (unsigned long)count[1], (unsigned long)stride[0], (unsigned long)stride[1],
+ (unsigned long)block[0], (unsigned long)block[1],
+ (unsigned long)(block[0] * block[1] * count[0] * count[1]));
k = 0;
- for(i = 0; i < num_points ; i++) {
+ for (i = 0; i < num_points; i++) {
HDprintf("(%d, %d)\n", (int)coords[k], (int)coords[k + 1]);
k += 2;
}
}
}
-
/*
* Fill the dataset with trivial data for testing.
* Assume dimension rank is 2 and data is stored contiguous.
*/
static void
-dataset_fill(hsize_t start[], hsize_t block[], DATATYPE * dataset)
+dataset_fill(hsize_t start[], hsize_t block[], DATATYPE *dataset)
{
DATATYPE *dataptr = dataset;
- hsize_t i, j;
+ hsize_t i, j;
/* put some trivial data in the data_array */
- for (i=0; i < block[0]; i++){
- for (j=0; j < block[1]; j++){
- *dataptr = (DATATYPE)((i+start[0])*100 + (j+start[1]+1));
- dataptr++;
- }
+ for (i = 0; i < block[0]; i++) {
+ for (j = 0; j < block[1]; j++) {
+ *dataptr = (DATATYPE)((i + start[0]) * 100 + (j + start[1] + 1));
+ dataptr++;
+ }
}
}
-
/*
* Print the content of the dataset.
*/
static void
-dataset_print(hsize_t start[], hsize_t block[], DATATYPE * dataset)
+dataset_print(hsize_t start[], hsize_t block[], DATATYPE *dataset)
{
DATATYPE *dataptr = dataset;
- hsize_t i, j;
+ hsize_t i, j;
/* print the column heading */
HDprintf("%-8s", "Cols:");
- for (j=0; j < block[1]; j++){
- HDprintf("%3lu ", (unsigned long)(start[1]+j));
+ for (j = 0; j < block[1]; j++) {
+ HDprintf("%3lu ", (unsigned long)(start[1] + j));
}
HDprintf("\n");
/* print the slab data */
- for (i=0; i < block[0]; i++){
- HDprintf("Row %2lu: ", (unsigned long)(i+start[0]));
- for (j=0; j < block[1]; j++){
- HDprintf("%03d ", *dataptr++);
- }
- HDprintf("\n");
+ for (i = 0; i < block[0]; i++) {
+ HDprintf("Row %2lu: ", (unsigned long)(i + start[0]));
+ for (j = 0; j < block[1]; j++) {
+ HDprintf("%03d ", *dataptr++);
+ }
+ HDprintf("\n");
}
}
-
/*
* Print the content of the dataset.
*/
int
-dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[], DATATYPE *dataset, DATATYPE *original)
+dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[], DATATYPE *dataset,
+ DATATYPE *original)
{
hsize_t i, j;
- int vrfyerrs;
+ int vrfyerrs;
/* print it if VERBOSE_MED */
- if(VERBOSE_MED) {
- HDprintf("dataset_vrfy dumping:::\n");
- HDprintf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
- (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
- (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
- HDprintf("original values:\n");
- dataset_print(start, block, original);
- HDprintf("compared values:\n");
- dataset_print(start, block, dataset);
+ if (VERBOSE_MED) {
+ HDprintf("dataset_vrfy dumping:::\n");
+ HDprintf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
+ (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0],
+ (unsigned long)count[1], (unsigned long)stride[0], (unsigned long)stride[1],
+ (unsigned long)block[0], (unsigned long)block[1]);
+ HDprintf("original values:\n");
+ dataset_print(start, block, original);
+ HDprintf("compared values:\n");
+ dataset_print(start, block, dataset);
}
vrfyerrs = 0;
- for (i=0; i < block[0]; i++){
- for (j=0; j < block[1]; j++){
- if(*dataset != *original){
- if(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
- HDprintf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %d, got %d\n",
- (unsigned long)i, (unsigned long)j,
- (unsigned long)(i+start[0]), (unsigned long)(j+start[1]),
- *(original), *(dataset));
- }
- dataset++;
- original++;
+ for (i = 0; i < block[0]; i++) {
+ for (j = 0; j < block[1]; j++) {
+ if (*dataset != *original) {
+ if (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED) {
+ HDprintf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %d, got %d\n",
+ (unsigned long)i, (unsigned long)j, (unsigned long)(i + start[0]),
+ (unsigned long)(j + start[1]), *(original), *(dataset));
+ }
+ dataset++;
+ original++;
+ }
}
}
- }
- if(vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
- HDprintf("[more errors ...]\n");
- if(vrfyerrs)
- HDprintf("%d errors found in dataset_vrfy\n", vrfyerrs);
- return(vrfyerrs);
+ if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
+ HDprintf("[more errors ...]\n");
+ if (vrfyerrs)
+ HDprintf("%d errors found in dataset_vrfy\n", vrfyerrs);
+ return (vrfyerrs);
}
/* NOTE: This is a memory intensive test and is only run
@@ -549,26 +541,27 @@ dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[]
* -n 1 ./h5_mpi_big_dataset.x 1024 1024 1024
*/
-#define H5FILE_NAME "hugefile.h5"
-#define DATASETNAME "dataset"
+#define H5FILE_NAME "hugefile.h5"
+#define DATASETNAME "dataset"
-static int MpioTest2G( MPI_Comm comm )
+static int
+MpioTest2G(MPI_Comm comm)
{
/*
* HDF5 APIs definitions
*/
- herr_t status;
- hid_t file_id, dset_id; /* file and dataset identifiers */
- hid_t plist_id; /* property list identifier */
- hid_t filespace; /* file and memory dataspace identifiers */
- int *data; /* pointer to data buffer to write */
- size_t tot_size_bytes;
- hid_t dcpl_id;
- hid_t memorydataspace;
- hid_t filedataspace;
- size_t slice_per_process;
- size_t data_size;
- size_t data_size_bytes;
+ herr_t status;
+ hid_t file_id, dset_id; /* file and dataset identifiers */
+ hid_t plist_id; /* property list identifier */
+ hid_t filespace; /* file and memory dataspace identifiers */
+ int * data; /* pointer to data buffer to write */
+ size_t tot_size_bytes;
+ hid_t dcpl_id;
+ hid_t memorydataspace;
+ hid_t filedataspace;
+ size_t slice_per_process;
+ size_t data_size;
+ size_t data_size_bytes;
hsize_t chunk[3];
hsize_t h5_counts[3];
@@ -578,25 +571,25 @@ static int MpioTest2G( MPI_Comm comm )
/*
* MPI variables
*/
- int mpi_size, mpi_rank;
- MPI_Info info = MPI_INFO_NULL;
+ int mpi_size, mpi_rank;
+ MPI_Info info = MPI_INFO_NULL;
MPI_Comm_size(comm, &mpi_size);
MPI_Comm_rank(comm, &mpi_rank);
- if(mpi_rank == 0) {
+ if (mpi_rank == 0) {
HDprintf("Using %d process on dataset shape "
- "[%" PRIuHSIZE ", %" PRIuHSIZE ", %" PRIuHSIZE "]\n",
- mpi_size, shape[0], shape[1], shape[2]);
+ "[%" PRIuHSIZE ", %" PRIuHSIZE ", %" PRIuHSIZE "]\n",
+ mpi_size, shape[0], shape[1], shape[2]);
}
/*
* Set up file access property list with parallel I/O access
*/
- plist_id = H5Pcreate(H5P_FILE_ACCESS);
- VRFY((plist_id >= 0), "H5Pcreate file_access succeeded");
- status = H5Pset_fapl_mpio(plist_id, comm, info);
- VRFY((status >= 0), "H5Pset_dxpl_mpio succeeded");
+ plist_id = H5Pcreate(H5P_FILE_ACCESS);
+ VRFY((plist_id >= 0), "H5Pcreate file_access succeeded");
+ status = H5Pset_fapl_mpio(plist_id, comm, info);
+ VRFY((status >= 0), "H5Pset_dxpl_mpio succeeded");
/*
* Create a new file collectively and release property list identifier.
@@ -611,10 +604,10 @@ static int MpioTest2G( MPI_Comm comm )
*/
tot_size_bytes = sizeof(int);
for (int i = 0; i < 3; i++) {
- tot_size_bytes *= shape[i];
+ tot_size_bytes *= shape[i];
}
- if(mpi_rank == 0) {
- HDprintf("Dataset of %zu bytes\n", tot_size_bytes);
+ if (mpi_rank == 0) {
+ HDprintf("Dataset of %zu bytes\n", tot_size_bytes);
}
filespace = H5Screate_simple(3, shape, NULL);
VRFY((filespace >= 0), "H5Screate_simple succeeded");
@@ -622,20 +615,18 @@ static int MpioTest2G( MPI_Comm comm )
/*
* Select chunking
*/
- dcpl_id = H5Pcreate (H5P_DATASET_CREATE);
+ dcpl_id = H5Pcreate(H5P_DATASET_CREATE);
VRFY((dcpl_id >= 0), "H5P_DATASET_CREATE");
chunk[0] = 4;
chunk[1] = shape[1];
chunk[2] = shape[2];
- status = H5Pset_chunk(dcpl_id, 3, chunk);
+ status = H5Pset_chunk(dcpl_id, 3, chunk);
VRFY((status >= 0), "H5Pset_chunk succeeded");
/*
* Create the dataset with default properties and close filespace.
*/
- dset_id = H5Dcreate2(file_id, DATASETNAME,
- H5T_NATIVE_INT, filespace,
- H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
+ dset_id = H5Dcreate2(file_id, DATASETNAME, H5T_NATIVE_INT, filespace, H5P_DEFAULT, dcpl_id, H5P_DEFAULT);
VRFY((dset_id >= 0), "H5Dcreate2 succeeded");
H5Sclose(filespace);
@@ -647,19 +638,20 @@ static int MpioTest2G( MPI_Comm comm )
status = H5Pset_dxpl_mpio(plist_id, H5FD_MPIO_COLLECTIVE);
VRFY((status >= 0), "");
- H5_CHECKED_ASSIGN(slice_per_process, size_t, (shape[0] + (hsize_t)mpi_size - 1) / (hsize_t)mpi_size, hsize_t);
- data_size = slice_per_process * shape[1] * shape[2];
+ H5_CHECKED_ASSIGN(slice_per_process, size_t, (shape[0] + (hsize_t)mpi_size - 1) / (hsize_t)mpi_size,
+ hsize_t);
+ data_size = slice_per_process * shape[1] * shape[2];
data_size_bytes = sizeof(int) * data_size;
- data = HDmalloc(data_size_bytes);
+ data = HDmalloc(data_size_bytes);
VRFY((data != NULL), "data HDmalloc succeeded");
for (size_t i = 0; i < data_size; i++) {
data[i] = mpi_rank;
}
- h5_counts[0] = slice_per_process;
- h5_counts[1] = shape[1];
- h5_counts[2] = shape[2];
+ h5_counts[0] = slice_per_process;
+ h5_counts[1] = shape[1];
+ h5_counts[2] = shape[2];
h5_offsets[0] = (size_t)mpi_rank * slice_per_process;
h5_offsets[1] = 0;
h5_offsets[2] = 0;
@@ -667,19 +659,17 @@ static int MpioTest2G( MPI_Comm comm )
VRFY((filedataspace >= 0), "H5Screate_simple succeeded");
// fix reminder along first dimension multiple of chunk[0]
- if ( h5_offsets[0] + h5_counts[0] > shape[0]) {
- h5_counts[0] = shape[0] - h5_offsets[0];
+ if (h5_offsets[0] + h5_counts[0] > shape[0]) {
+ h5_counts[0] = shape[0] - h5_offsets[0];
}
- status = H5Sselect_hyperslab(filedataspace, H5S_SELECT_SET,
- h5_offsets, NULL, h5_counts, NULL);
+ status = H5Sselect_hyperslab(filedataspace, H5S_SELECT_SET, h5_offsets, NULL, h5_counts, NULL);
VRFY((status >= 0), "H5Sselect_hyperslab succeeded");
memorydataspace = H5Screate_simple(3, h5_counts, NULL);
VRFY((memorydataspace >= 0), "H5Screate_simple succeeded");
- status = H5Dwrite(dset_id, H5T_NATIVE_INT,
- memorydataspace, filedataspace, plist_id, data);
+ status = H5Dwrite(dset_id, H5T_NATIVE_INT, memorydataspace, filedataspace, plist_id, data);
VRFY((status >= 0), "H5Dwrite succeeded");
H5Pclose(plist_id);
@@ -695,11 +685,10 @@ static int MpioTest2G( MPI_Comm comm )
HDprintf("Proc %d - MpioTest2G test succeeded\n", mpi_rank);
if (mpi_rank == 0)
- HDremove(FILENAME[1]);
+ HDremove(FILENAME[1]);
return 0;
}
-
/*
* Part 1.a--Independent read/write for fixed dimension datasets.
*/
@@ -715,35 +704,37 @@ static int MpioTest2G( MPI_Comm comm )
void
dataset_writeInd(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
- hsize_t dims[MAX_RANK] = {1,}; /* dataset dim sizes */
- hsize_t data_size;
- DATATYPE *data_array1 = NULL; /* data buffer */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ hsize_t dims[MAX_RANK] = {
+ 1,
+ }; /* dataset dim sizes */
+ hsize_t data_size;
+ DATATYPE * data_array1 = NULL; /* data buffer */
const char *filename;
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
hsize_t count[MAX_RANK];
- hsize_t stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Independent write test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Independent write test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* allocate memory for data buffer */
data_size = sizeof(DATATYPE);
@@ -766,7 +757,6 @@ dataset_writeInd(void)
ret = H5Pclose(acc_tpl);
VRFY((ret >= 0), "");
-
/* ---------------------------------------------
* Define the dimensions of the overall datasets
* and the slabs local to the MPI process.
@@ -774,21 +764,17 @@ dataset_writeInd(void)
/* setup dimensionality object */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- sid = H5Screate_simple (MAX_RANK, dims, NULL);
+ sid = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
-
/* create a dataset collectively */
- dataset1 = H5Dcreate2(fid, DATASETNAME1, H5T_NATIVE_INT, sid,
- H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ dataset1 = H5Dcreate2(fid, DATASETNAME1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
VRFY((dataset1 >= 0), "H5Dcreate2 succeeded");
/* create another dataset collectively */
- dataset2 = H5Dcreate2(fid, DATASETNAME2, H5T_NATIVE_INT, sid,
- H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ dataset2 = H5Dcreate2(fid, DATASETNAME2, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
VRFY((dataset2 >= 0), "H5Dcreate2 succeeded");
-
/*
* To test the independent orders of writes between processes, all
* even number processes write to dataset1 first, then dataset2.
@@ -803,43 +789,40 @@ dataset_writeInd(void)
MESG("data_array initialized");
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* write data independently */
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 succeeded");
/* write data independently */
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset2 succeeded");
/* setup dimensions again to write with zero rows for process 0 */
- if(VERBOSE_MED)
- HDprintf("writeInd by some with zero row\n");
+ if (VERBOSE_MED)
+ HDprintf("writeInd by some with zero row\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZROW);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
- if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("writeInd by some with zero row");
-if((mpi_rank/2)*2 != mpi_rank){
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
- VRFY((ret >= 0), "H5Dwrite dataset1 by ZROW succeeded");
-}
+ if ((mpi_rank / 2) * 2 != mpi_rank) {
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
+ VRFY((ret >= 0), "H5Dwrite dataset1 by ZROW succeeded");
+ }
#ifdef BARRIER_CHECKS
-MPI_Barrier(test_comm);
+ MPI_Barrier(test_comm);
#endif /* BARRIER_CHECKS */
/* release dataspace ID */
@@ -858,44 +841,45 @@ MPI_Barrier(test_comm);
H5Fclose(fid);
/* release data buffers */
- if(data_array1) HDfree(data_array1);
+ if (data_array1)
+ HDfree(data_array1);
}
/* Example of using the parallel HDF5 library to read a dataset */
void
dataset_readInd(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ DATATYPE * data_array1 = NULL; /* data buffer */
+ DATATYPE * data_origin1 = NULL; /* expected data buffer */
const char *filename;
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
- hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Independent read test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Independent read test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
- data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* setup file access template */
@@ -918,40 +902,39 @@ dataset_readInd(void)
dataset2 = H5Dopen2(fid, DATASETNAME1, H5P_DEFAULT);
VRFY((dataset2 >= 0), "");
-
/* set up dimensions of the slab this process accesses */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
/* read data independently */
- ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* read data independently */
- ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* close dataset collectively */
ret = H5Dclose(dataset1);
@@ -966,11 +949,12 @@ dataset_readInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) HDfree(data_array1);
- if(data_origin1) HDfree(data_origin1);
+ if (data_array1)
+ HDfree(data_array1);
+ if (data_origin1)
+ HDfree(data_origin1);
}
-
/*
* Part 1.b--Collective read/write for fixed dimension datasets.
*/
@@ -987,49 +971,51 @@ dataset_readInd(void)
void
dataset_writeAll(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2, dataset3, dataset4; /* Dataset ID */
- hid_t dataset5, dataset6, dataset7; /* Dataset ID */
- hid_t datatype; /* Datatype ID */
- hsize_t dims[MAX_RANK] = {1,}; /* dataset dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2, dataset3, dataset4; /* Dataset ID */
+ hid_t dataset5, dataset6, dataset7; /* Dataset ID */
+ hid_t datatype; /* Datatype ID */
+ hsize_t dims[MAX_RANK] = {
+ 1,
+ }; /* dataset dim sizes */
+ DATATYPE * data_array1 = NULL; /* data buffer */
const char *filename;
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
hsize_t count[MAX_RANK];
- hsize_t stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- size_t num_points; /* for point selection */
- hsize_t *coords = NULL; /* for point selection */
- hsize_t current_dims; /* for point selection */
+ size_t num_points; /* for point selection */
+ hsize_t *coords = NULL; /* for point selection */
+ hsize_t current_dims; /* for point selection */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Collective write test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Collective write test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* set up the coords array selection */
num_points = (size_t)dim1;
- coords = (hsize_t *)HDmalloc((size_t)dim1 * (size_t)MAX_RANK * sizeof(hsize_t));
+ coords = (hsize_t *)HDmalloc((size_t)dim1 * (size_t)MAX_RANK * sizeof(hsize_t));
VRFY((coords != NULL), "coords malloc succeeded");
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
@@ -1047,7 +1033,6 @@ dataset_writeAll(void)
ret = H5Pclose(acc_tpl);
VRFY((ret >= 0), "");
-
/* --------------------------
* Define the dimensions of the overall datasets
* and create the dataset
@@ -1055,17 +1040,16 @@ dataset_writeAll(void)
/* setup 2-D dimensionality object */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- sid = H5Screate_simple (MAX_RANK, dims, NULL);
+ sid = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
-
/* create a dataset collectively */
dataset1 = H5Dcreate2(fid, DATASETNAME1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
VRFY((dataset1 >= 0), "H5Dcreate2 succeeded");
/* create another dataset collectively */
datatype = H5Tcopy(H5T_NATIVE_INT);
- ret = H5Tset_order(datatype, H5T_ORDER_LE);
+ ret = H5Tset_order(datatype, H5T_ORDER_LE);
VRFY((ret >= 0), "H5Tset_order succeeded");
dataset2 = H5Dcreate2(fid, DATASETNAME2, datatype, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
@@ -1104,54 +1088,51 @@ dataset_writeAll(void)
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill the local slab with some trivial data */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate xfer succeeded");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* write data collectively */
MESG("writeAll by Row");
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 succeeded");
/* setup dimensions again to writeAll with zero rows for process 0 */
- if(VERBOSE_MED)
- HDprintf("writeAll by some with zero row\n");
+ if (VERBOSE_MED)
+ HDprintf("writeAll by some with zero row\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZROW);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
- if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("writeAll by some with zero row");
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 by ZROW succeeded");
/* release all temporary handles. */
@@ -1167,59 +1148,56 @@ dataset_writeAll(void)
/* put some trivial data in the data_array */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill the local slab with some trivial data */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* write data independently */
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset2 succeeded");
/* setup dimensions again to writeAll with zero columns for process 0 */
- if(VERBOSE_MED)
- HDprintf("writeAll by some with zero col\n");
+ if (VERBOSE_MED)
+ HDprintf("writeAll by some with zero col\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZCOL);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
- if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("writeAll by some with zero col");
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 by ZCOL succeeded");
/* release all temporary handles. */
@@ -1229,16 +1207,15 @@ dataset_writeAll(void)
H5Sclose(mem_dataspace);
H5Pclose(xfer_plist);
-
/* Dataset3: each process takes a block of rows, except process zero uses "none" selection. */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset3);
+ file_dataspace = H5Dget_space(dataset3);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
- if(MAINPROCESS) {
- ret = H5Sselect_none(file_dataspace);
- VRFY((ret >= 0), "H5Sselect_none file_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_none(file_dataspace);
+ VRFY((ret >= 0), "H5Sselect_none file_dataspace succeeded");
} /* end if */
else {
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
@@ -1246,42 +1223,39 @@ dataset_writeAll(void)
} /* end else */
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
- if(MAINPROCESS) {
- ret = H5Sselect_none(mem_dataspace);
- VRFY((ret >= 0), "H5Sselect_none mem_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_none(mem_dataspace);
+ VRFY((ret >= 0), "H5Sselect_none mem_dataspace succeeded");
} /* end if */
/* fill the local slab with some trivial data */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
} /* end if */
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* write data collectively */
MESG("writeAll with none");
- ret = H5Dwrite(dataset3, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset3, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset3 succeeded");
/* write data collectively (with datatype conversion) */
MESG("writeAll with none");
- ret = H5Dwrite(dataset3, H5T_NATIVE_UCHAR, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset3, H5T_NATIVE_UCHAR, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset3 succeeded");
/* release all temporary handles. */
@@ -1295,11 +1269,11 @@ dataset_writeAll(void)
/* Additionally, these are in a scalar dataspace */
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset4);
+ file_dataspace = H5Dget_space(dataset4);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
- if(MAINPROCESS) {
- ret = H5Sselect_none(file_dataspace);
- VRFY((ret >= 0), "H5Sselect_all file_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_none(file_dataspace);
+ VRFY((ret >= 0), "H5Sselect_all file_dataspace succeeded");
} /* end if */
else {
ret = H5Sselect_all(file_dataspace);
@@ -1309,9 +1283,9 @@ dataset_writeAll(void)
/* create a memory dataspace independently */
mem_dataspace = H5Screate(H5S_SCALAR);
VRFY((mem_dataspace >= 0), "");
- if(MAINPROCESS) {
- ret = H5Sselect_none(mem_dataspace);
- VRFY((ret >= 0), "H5Sselect_all mem_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_none(mem_dataspace);
+ VRFY((ret >= 0), "H5Sselect_all mem_dataspace succeeded");
} /* end if */
else {
ret = H5Sselect_all(mem_dataspace);
@@ -1321,31 +1295,29 @@ dataset_writeAll(void)
/* fill the local slab with some trivial data */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
} /* end if */
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
/* write data collectively */
MESG("writeAll with scalar dataspace");
- ret = H5Dwrite(dataset4, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset4, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset4 succeeded");
/* write data collectively (with datatype conversion) */
MESG("writeAll with scalar dataspace");
- ret = H5Dwrite(dataset4, H5T_NATIVE_UCHAR, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset4, H5T_NATIVE_UCHAR, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset4 succeeded");
/* release all temporary handles. */
@@ -1353,55 +1325,54 @@ dataset_writeAll(void)
H5Sclose(mem_dataspace);
H5Pclose(xfer_plist);
-
- if(data_array1) free(data_array1);
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ if (data_array1)
+ free(data_array1);
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- block[0] = 1;
- block[1] = (hsize_t)dim1;
+ block[0] = 1;
+ block[1] = (hsize_t)dim1;
stride[0] = 1;
stride[1] = (hsize_t)dim1;
- count[0] = 1;
- count[1] = 1;
- start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank;
- start[1] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = (hsize_t)dim0 / (hsize_t)mpi_size * (hsize_t)mpi_rank;
+ start[1] = 0;
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* Dataset5: point selection in File - Hyperslab selection in Memory*/
/* create a file dataspace independently */
- point_set (start, count, stride, block, num_points, coords, OUT_OF_ORDER);
- file_dataspace = H5Dget_space (dataset5);
+ point_set(start, count, stride, block, num_points, coords, OUT_OF_ORDER);
+ file_dataspace = H5Dget_space(dataset5);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
- start[0] = 0;
- start[1] = 0;
- mem_dataspace = H5Dget_space (dataset5);
+ start[0] = 0;
+ start[1] = 0;
+ mem_dataspace = H5Dget_space(dataset5);
VRFY((mem_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
/* write data collectively */
- ret = H5Dwrite(dataset5, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset5, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset5 succeeded");
/* release all temporary handles. */
@@ -1411,35 +1382,34 @@ dataset_writeAll(void)
/* Dataset6: point selection in File - Point selection in Memory*/
/* create a file dataspace independently */
- start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank;
+ start[0] = (hsize_t)dim0 / (hsize_t)mpi_size * (hsize_t)mpi_rank;
start[1] = 0;
- point_set (start, count, stride, block, num_points, coords, OUT_OF_ORDER);
- file_dataspace = H5Dget_space (dataset6);
+ point_set(start, count, stride, block, num_points, coords, OUT_OF_ORDER);
+ file_dataspace = H5Dget_space(dataset6);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
start[0] = 0;
start[1] = 0;
- point_set (start, count, stride, block, num_points, coords, IN_ORDER);
- mem_dataspace = H5Dget_space (dataset6);
+ point_set(start, count, stride, block, num_points, coords, IN_ORDER);
+ mem_dataspace = H5Dget_space(dataset6);
VRFY((mem_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(mem_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
/* write data collectively */
- ret = H5Dwrite(dataset6, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset6, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset6 succeeded");
/* release all temporary handles. */
@@ -1449,34 +1419,33 @@ dataset_writeAll(void)
/* Dataset7: point selection in File - All selection in Memory*/
/* create a file dataspace independently */
- start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank;
+ start[0] = (hsize_t)dim0 / (hsize_t)mpi_size * (hsize_t)mpi_rank;
start[1] = 0;
- point_set (start, count, stride, block, num_points, coords, IN_ORDER);
- file_dataspace = H5Dget_space (dataset7);
+ point_set(start, count, stride, block, num_points, coords, IN_ORDER);
+ file_dataspace = H5Dget_space(dataset7);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
- current_dims = num_points;
- mem_dataspace = H5Screate_simple (1, &current_dims, NULL);
+ current_dims = num_points;
+ mem_dataspace = H5Screate_simple(1, &current_dims, NULL);
VRFY((mem_dataspace >= 0), "mem_dataspace create succeeded");
ret = H5Sselect_all(mem_dataspace);
VRFY((ret >= 0), "H5Sselect_all succeeded");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
/* write data collectively */
- ret = H5Dwrite(dataset7, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset7, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset7 succeeded");
/* release all temporary handles. */
@@ -1506,8 +1475,10 @@ dataset_writeAll(void)
H5Fclose(fid);
/* release data buffers */
- if(coords) HDfree(coords);
- if(data_array1) HDfree(data_array1);
+ if (coords)
+ HDfree(coords);
+ if (data_array1)
+ HDfree(data_array1);
}
/*
@@ -1522,47 +1493,47 @@ dataset_writeAll(void)
void
dataset_readAll(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2, dataset5, dataset6, dataset7; /* Dataset ID */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2, dataset5, dataset6, dataset7; /* Dataset ID */
+ DATATYPE * data_array1 = NULL; /* data buffer */
+ DATATYPE * data_origin1 = NULL; /* expected data buffer */
const char *filename;
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
- hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- size_t num_points; /* for point selection */
- hsize_t *coords = NULL; /* for point selection */
- int i,j,k;
+ size_t num_points; /* for point selection */
+ hsize_t *coords = NULL; /* for point selection */
+ int i, j, k;
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Collective read test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Collective read test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* set up the coords array selection */
num_points = (size_t)dim1;
- coords = (hsize_t *)HDmalloc((size_t)dim0 * (size_t)dim1 * MAX_RANK * sizeof(hsize_t));
+ coords = (hsize_t *)HDmalloc((size_t)dim0 * (size_t)dim1 * MAX_RANK * sizeof(hsize_t));
VRFY((coords != NULL), "coords malloc succeeded");
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
- data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
@@ -1573,14 +1544,13 @@ dataset_readAll(void)
VRFY((acc_tpl >= 0), "");
/* open the file collectively */
- fid=H5Fopen(filename,H5F_ACC_RDONLY,acc_tpl);
+ fid = H5Fopen(filename, H5F_ACC_RDONLY, acc_tpl);
VRFY((fid >= 0), "H5Fopen succeeded");
/* Release file-access template */
ret = H5Pclose(acc_tpl);
VRFY((ret >= 0), "");
-
/* --------------------------
* Open the datasets in it
* ------------------------- */
@@ -1608,62 +1578,61 @@ dataset_readAll(void)
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_origin1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_origin1);
}
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* read data collectively */
- ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset1 succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* setup dimensions again to readAll with zero columns for process 0 */
- if(VERBOSE_MED)
- HDprintf("readAll by some with zero col\n");
+ if (VERBOSE_MED)
+ HDprintf("readAll by some with zero col\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZCOL);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
- if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("readAll by some with zero col");
- ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset1 by ZCOL succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* release all temporary handles. */
/* Could have used them for dataset2 but it is cleaner */
@@ -1676,218 +1645,221 @@ dataset_readAll(void)
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_origin1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_origin1);
}
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* read data collectively */
- ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset2 succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* setup dimensions again to readAll with zero rows for process 0 */
- if(VERBOSE_MED)
- HDprintf("readAll by some with zero row\n");
+ if (VERBOSE_MED)
+ HDprintf("readAll by some with zero row\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZROW);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
- if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ if (MAINPROCESS) {
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("readAll by some with zero row");
- ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset1 by ZROW succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* release all temporary handles. */
H5Sclose(file_dataspace);
H5Sclose(mem_dataspace);
H5Pclose(xfer_plist);
- if(data_array1) free(data_array1);
- if(data_origin1) free(data_origin1);
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ if (data_array1)
+ free(data_array1);
+ if (data_origin1)
+ free(data_origin1);
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
- block[0] = 1;
- block[1] = (hsize_t)dim1;
+ block[0] = 1;
+ block[1] = (hsize_t)dim1;
stride[0] = 1;
stride[1] = (hsize_t)dim1;
- count[0] = 1;
- count[1] = 1;
- start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank;
- start[1] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = (hsize_t)dim0 / (hsize_t)mpi_size * (hsize_t)mpi_rank;
+ start[1] = 0;
dataset_fill(start, block, data_origin1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_origin1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_origin1);
}
/* Dataset5: point selection in memory - Hyperslab selection in file*/
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset5);
+ file_dataspace = H5Dget_space(dataset5);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
start[0] = 0;
start[1] = 0;
- point_set (start, count, stride, block, num_points, coords, OUT_OF_ORDER);
- mem_dataspace = H5Dget_space (dataset5);
+ point_set(start, count, stride, block, num_points, coords, OUT_OF_ORDER);
+ mem_dataspace = H5Dget_space(dataset5);
VRFY((mem_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(mem_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
/* read data collectively */
- ret = H5Dread(dataset5, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset5, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset5 succeeded");
-
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* release all temporary handles. */
H5Sclose(file_dataspace);
H5Sclose(mem_dataspace);
H5Pclose(xfer_plist);
- if(data_array1) free(data_array1);
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ if (data_array1)
+ free(data_array1);
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* Dataset6: point selection in File - Point selection in Memory*/
/* create a file dataspace independently */
- start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank;
+ start[0] = (hsize_t)dim0 / (hsize_t)mpi_size * (hsize_t)mpi_rank;
start[1] = 0;
- point_set (start, count, stride, block, num_points, coords, IN_ORDER);
- file_dataspace = H5Dget_space (dataset6);
+ point_set(start, count, stride, block, num_points, coords, IN_ORDER);
+ file_dataspace = H5Dget_space(dataset6);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
start[0] = 0;
start[1] = 0;
- point_set (start, count, stride, block, num_points, coords, OUT_OF_ORDER);
- mem_dataspace = H5Dget_space (dataset6);
+ point_set(start, count, stride, block, num_points, coords, OUT_OF_ORDER);
+ mem_dataspace = H5Dget_space(dataset6);
VRFY((mem_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(mem_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
/* read data collectively */
- ret = H5Dread(dataset6, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset6, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset6 succeeded");
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
/* release all temporary handles. */
H5Sclose(file_dataspace);
H5Sclose(mem_dataspace);
H5Pclose(xfer_plist);
- if(data_array1) free(data_array1);
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ if (data_array1)
+ free(data_array1);
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* Dataset7: point selection in memory - All selection in file*/
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset7);
+ file_dataspace = H5Dget_space(dataset7);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_all(file_dataspace);
VRFY((ret >= 0), "H5Sselect_all succeeded");
num_points = (size_t)dim0 * (size_t)dim1;
- k=0;
- for (i=0 ; i<dim0; i++) {
- for (j=0 ; j<dim1; j++) {
+ k = 0;
+ for (i = 0; i < dim0; i++) {
+ for (j = 0; j < dim1; j++) {
coords[k++] = (hsize_t)i;
coords[k++] = (hsize_t)j;
}
}
- mem_dataspace = H5Dget_space (dataset7);
+ mem_dataspace = H5Dget_space(dataset7);
VRFY((mem_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(mem_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
/* read data collectively */
- ret = H5Dread(dataset7, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset7, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset7 succeeded");
- start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank;
+ start[0] = (hsize_t)dim0 / (hsize_t)mpi_size * (hsize_t)mpi_rank;
start[1] = 0;
- ret = dataset_vrfy(start, count, stride, block, data_array1+(dim0/mpi_size * dim1 * mpi_rank), data_origin1);
- if(ret) nerrors++;
+ ret = dataset_vrfy(start, count, stride, block, data_array1 + (dim0 / mpi_size * dim1 * mpi_rank),
+ data_origin1);
+ if (ret)
+ nerrors++;
/* release all temporary handles. */
H5Sclose(file_dataspace);
@@ -1912,12 +1884,14 @@ dataset_readAll(void)
H5Fclose(fid);
/* release data buffers */
- if(coords) HDfree(coords);
- if(data_array1) HDfree(data_array1);
- if(data_origin1) HDfree(data_origin1);
+ if (coords)
+ HDfree(coords);
+ if (data_array1)
+ HDfree(data_array1);
+ if (data_origin1)
+ HDfree(data_origin1);
}
-
/*
* Part 2--Independent read/write for extendible datasets.
*/
@@ -1933,45 +1907,44 @@ dataset_readAll(void)
void
extend_writeInd(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[MAX_RANK]; /* dataset dim sizes */
- hsize_t max_dims[MAX_RANK] =
- {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- hsize_t chunk_dims[MAX_RANK]; /* chunk sizes */
- hid_t dataset_pl; /* dataset create prop. list */
+ hsize_t dims[MAX_RANK]; /* dataset dim sizes */
+ hsize_t max_dims[MAX_RANK] = {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
+ DATATYPE * data_array1 = NULL; /* data buffer */
+ hsize_t chunk_dims[MAX_RANK]; /* chunk sizes */
+ hid_t dataset_pl; /* dataset create prop. list */
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
- hsize_t count[MAX_RANK]; /* for hyperslab setting */
- hsize_t stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t count[MAX_RANK]; /* for hyperslab setting */
+ hsize_t stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Extend independent write test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Extend independent write test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* setup chunk-size. Make sure sizes are > 0 */
chunk_dims[0] = (hsize_t)chunkdim0;
chunk_dims[1] = (hsize_t)chunkdim1;
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
@@ -1981,22 +1954,22 @@ extend_writeInd(void)
acc_tpl = create_faccess_plist(comm, info, facc_type);
VRFY((acc_tpl >= 0), "");
-/* Reduce the number of metadata cache slots, so that there are cache
- * collisions during the raw data I/O on the chunked dataset. This stresses
- * the metadata cache and tests for cache bugs. -QAK
- */
-{
- int mdc_nelmts;
- size_t rdcc_nelmts;
- size_t rdcc_nbytes;
- double rdcc_w0;
-
- ret = H5Pget_cache(acc_tpl,&mdc_nelmts,&rdcc_nelmts,&rdcc_nbytes,&rdcc_w0);
- VRFY((ret >= 0), "H5Pget_cache succeeded");
- mdc_nelmts=4;
- ret = H5Pset_cache(acc_tpl,mdc_nelmts,rdcc_nelmts,rdcc_nbytes,rdcc_w0);
- VRFY((ret >= 0), "H5Pset_cache succeeded");
-}
+ /* Reduce the number of metadata cache slots, so that there are cache
+ * collisions during the raw data I/O on the chunked dataset. This stresses
+ * the metadata cache and tests for cache bugs. -QAK
+ */
+ {
+ int mdc_nelmts;
+ size_t rdcc_nelmts;
+ size_t rdcc_nbytes;
+ double rdcc_w0;
+
+ ret = H5Pget_cache(acc_tpl, &mdc_nelmts, &rdcc_nelmts, &rdcc_nbytes, &rdcc_w0);
+ VRFY((ret >= 0), "H5Pget_cache succeeded");
+ mdc_nelmts = 4;
+ ret = H5Pset_cache(acc_tpl, mdc_nelmts, rdcc_nelmts, rdcc_nbytes, rdcc_w0);
+ VRFY((ret >= 0), "H5Pset_cache succeeded");
+ }
/* create the file collectively */
fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl);
@@ -2006,14 +1979,13 @@ extend_writeInd(void)
ret = H5Pclose(acc_tpl);
VRFY((ret >= 0), "");
-
/* --------------------------------------------------------------
* Define the dimensions of the overall datasets and create them.
* ------------------------------------------------------------- */
/* set up dataset storage chunk sizes and creation property list */
- if(VERBOSE_MED)
- HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
+ if (VERBOSE_MED)
+ HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
dataset_pl = H5Pcreate(H5P_DATASET_CREATE);
VRFY((dataset_pl >= 0), "H5Pcreate succeeded");
ret = H5Pset_chunk(dataset_pl, MAX_RANK, chunk_dims);
@@ -2022,7 +1994,7 @@ extend_writeInd(void)
/* setup dimensionality object */
/* start out with no rows, extend it later. */
dims[0] = dims[1] = 0;
- sid = H5Screate_simple (MAX_RANK, dims, max_dims);
+ sid = H5Screate_simple(MAX_RANK, dims, max_dims);
VRFY((sid >= 0), "H5Screate_simple succeeded");
/* create an extendible dataset collectively */
@@ -2037,8 +2009,6 @@ extend_writeInd(void)
H5Sclose(sid);
H5Pclose(dataset_pl);
-
-
/* -------------------------
* Test writing to dataset1
* -------------------------*/
@@ -2048,37 +2018,35 @@ extend_writeInd(void)
/* put some trivial data in the data_array */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* Extend its current dim sizes before writing */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- ret = H5Dset_extent(dataset1, dims);
+ ret = H5Dset_extent(dataset1, dims);
VRFY((ret >= 0), "H5Dset_extent succeeded");
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* write data independently */
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
H5Sclose(file_dataspace);
H5Sclose(mem_dataspace);
-
/* -------------------------
* Test writing to dataset2
* -------------------------*/
@@ -2088,13 +2056,13 @@ extend_writeInd(void)
/* put some trivial data in the data_array */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* Try write to dataset2 beyond its current dim sizes. Should fail. */
@@ -2103,14 +2071,13 @@ extend_writeInd(void)
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset2);
+ file_dataspace = H5Dget_space(dataset2);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* write data independently. Should fail. */
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret < 0), "H5Dwrite failed as expected");
/* restore auto error reporting */
@@ -2120,18 +2087,17 @@ extend_writeInd(void)
/* Extend dataset2 and try again. Should succeed. */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- ret = H5Dset_extent(dataset2, dims);
+ ret = H5Dset_extent(dataset2, dims);
VRFY((ret >= 0), "H5Dset_extent succeeded");
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset2);
+ file_dataspace = H5Dget_space(dataset2);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* write data independently */
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
@@ -2140,7 +2106,6 @@ extend_writeInd(void)
ret = H5Sclose(mem_dataspace);
VRFY((ret >= 0), "H5Sclose succeeded");
-
/* close dataset collectively */
ret = H5Dclose(dataset1);
VRFY((ret >= 0), "H5Dclose1 succeeded");
@@ -2151,7 +2116,8 @@ extend_writeInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) HDfree(data_array1);
+ if (data_array1)
+ HDfree(data_array1);
}
/*
@@ -2164,30 +2130,30 @@ void
extend_writeInd2(void)
{
const char *filename;
- hid_t fid; /* HDF5 file ID */
- hid_t fapl_id; /* File access templates */
- hid_t fs; /* File dataspace ID */
- hid_t ms; /* Memory dataspace ID */
- hid_t dataset; /* Dataset ID */
- hsize_t orig_size=10; /* Original dataset dim size */
- hsize_t new_size=20; /* Extended dataset dim size */
- hsize_t one=1;
- hsize_t max_size = H5S_UNLIMITED; /* dataset maximum dim size */
- hsize_t chunk_size = 16384; /* chunk size */
- hid_t dcpl; /* dataset create prop. list */
- int written[10], /* Data to write */
- retrieved[10]; /* Data read in */
- int mpi_size, mpi_rank; /* MPI settings */
- int i; /* Local index variable */
- herr_t ret; /* Generic return value */
+ hid_t fid; /* HDF5 file ID */
+ hid_t fapl_id; /* File access templates */
+ hid_t fs; /* File dataspace ID */
+ hid_t ms; /* Memory dataspace ID */
+ hid_t dataset; /* Dataset ID */
+ hsize_t orig_size = 10; /* Original dataset dim size */
+ hsize_t new_size = 20; /* Extended dataset dim size */
+ hsize_t one = 1;
+ hsize_t max_size = H5S_UNLIMITED; /* dataset maximum dim size */
+ hsize_t chunk_size = 16384; /* chunk size */
+ hid_t dcpl; /* dataset create prop. list */
+ int written[10], /* Data to write */
+ retrieved[10]; /* Data read in */
+ int mpi_size, mpi_rank; /* MPI settings */
+ int i; /* Local index variable */
+ herr_t ret; /* Generic return value */
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Extend independent write test #2 on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Extend independent write test #2 on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* -------------------
* START AN HDF5 FILE
@@ -2204,7 +2170,6 @@ extend_writeInd2(void)
ret = H5Pclose(fapl_id);
VRFY((ret >= 0), "H5Pclose succeeded");
-
/* --------------------------------------------------------------
* Define the dimensions of the overall datasets and create them.
* ------------------------------------------------------------- */
@@ -2216,7 +2181,7 @@ extend_writeInd2(void)
VRFY((ret >= 0), "H5Pset_chunk succeeded");
/* setup dimensionality object */
- fs = H5Screate_simple (1, &orig_size, &max_size);
+ fs = H5Screate_simple(1, &orig_size, &max_size);
VRFY((fs >= 0), "H5Screate_simple succeeded");
/* create an extendible dataset collectively */
@@ -2227,7 +2192,6 @@ extend_writeInd2(void)
ret = H5Pclose(dcpl);
VRFY((ret >= 0), "H5Pclose succeeded");
-
/* -------------------------
* Test writing to dataset
* -------------------------*/
@@ -2236,13 +2200,13 @@ extend_writeInd2(void)
VRFY((ms >= 0), "H5Screate_simple succeeded");
/* put some trivial data in the data_array */
- for(i = 0; i < (int)orig_size; i++)
+ for (i = 0; i < (int)orig_size; i++)
written[i] = i;
MESG("data array initialized");
- if(VERBOSE_MED) {
- MESG("writing at offset zero: ");
- for(i = 0; i < (int)orig_size; i++)
- HDprintf("%s%d", i?", ":"", written[i]);
+ if (VERBOSE_MED) {
+ MESG("writing at offset zero: ");
+ for (i = 0; i < (int)orig_size; i++)
+ HDprintf("%s%d", i ? ", " : "", written[i]);
HDprintf("\n");
}
ret = H5Dwrite(dataset, H5T_NATIVE_INT, ms, fs, H5P_DEFAULT, written);
@@ -2253,16 +2217,16 @@ extend_writeInd2(void)
* -------------------------*/
ret = H5Dread(dataset, H5T_NATIVE_INT, ms, fs, H5P_DEFAULT, retrieved);
VRFY((ret >= 0), "H5Dread succeeded");
- for (i=0; i<(int)orig_size; i++)
- if(written[i]!=retrieved[i]) {
- HDprintf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n",__LINE__,
- i,written[i], i,retrieved[i]);
+ for (i = 0; i < (int)orig_size; i++)
+ if (written[i] != retrieved[i]) {
+ HDprintf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n", __LINE__, i,
+ written[i], i, retrieved[i]);
nerrors++;
}
- if(VERBOSE_MED){
- MESG("read at offset zero: ");
- for (i=0; i<(int)orig_size; i++)
- HDprintf("%s%d", i?", ":"", retrieved[i]);
+ if (VERBOSE_MED) {
+ MESG("read at offset zero: ");
+ for (i = 0; i < (int)orig_size; i++)
+ HDprintf("%s%d", i ? ", " : "", retrieved[i]);
HDprintf("\n");
}
@@ -2279,13 +2243,13 @@ extend_writeInd2(void)
/* -------------------------
* Write to the second half of the dataset
* -------------------------*/
- for (i=0; i<(int)orig_size; i++)
+ for (i = 0; i < (int)orig_size; i++)
H5_CHECKED_ASSIGN(written[i], int, orig_size + (hsize_t)i, hsize_t);
MESG("data array re-initialized");
- if(VERBOSE_MED) {
- MESG("writing at offset 10: ");
- for (i=0; i<(int)orig_size; i++)
- HDprintf("%s%d", i?", ":"", written[i]);
+ if (VERBOSE_MED) {
+ MESG("writing at offset 10: ");
+ for (i = 0; i < (int)orig_size; i++)
+ HDprintf("%s%d", i ? ", " : "", written[i]);
HDprintf("\n");
}
ret = H5Sselect_hyperslab(fs, H5S_SELECT_SET, &orig_size, NULL, &one, &orig_size);
@@ -2298,20 +2262,19 @@ extend_writeInd2(void)
* -------------------------*/
ret = H5Dread(dataset, H5T_NATIVE_INT, ms, fs, H5P_DEFAULT, retrieved);
VRFY((ret >= 0), "H5Dread succeeded");
- for (i=0; i<(int)orig_size; i++)
- if(written[i]!=retrieved[i]) {
- HDprintf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n",__LINE__,
- i,written[i], i,retrieved[i]);
+ for (i = 0; i < (int)orig_size; i++)
+ if (written[i] != retrieved[i]) {
+ HDprintf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n", __LINE__, i,
+ written[i], i, retrieved[i]);
nerrors++;
}
- if(VERBOSE_MED){
- MESG("read at offset 10: ");
- for (i=0; i<(int)orig_size; i++)
- HDprintf("%s%d", i?", ":"", retrieved[i]);
+ if (VERBOSE_MED) {
+ MESG("read at offset 10: ");
+ for (i = 0; i < (int)orig_size; i++)
+ HDprintf("%s%d", i ? ", " : "", retrieved[i]);
HDprintf("\n");
}
-
/* Close dataset collectively */
ret = H5Dclose(dataset);
VRFY((ret >= 0), "H5Dclose succeeded");
@@ -2325,41 +2288,41 @@ extend_writeInd2(void)
void
extend_readInd(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
- hsize_t dims[MAX_RANK]; /* dataset dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_array2 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ hsize_t dims[MAX_RANK]; /* dataset dim sizes */
+ DATATYPE * data_array1 = NULL; /* data buffer */
+ DATATYPE * data_array2 = NULL; /* data buffer */
+ DATATYPE * data_origin1 = NULL; /* expected data buffer */
const char *filename;
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
- hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Extend independent read test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Extend independent read test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
- data_array2 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array2 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded");
- data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
@@ -2370,7 +2333,7 @@ extend_readInd(void)
VRFY((acc_tpl >= 0), "");
/* open the file collectively */
- fid=H5Fopen(filename,H5F_ACC_RDONLY,acc_tpl);
+ fid = H5Fopen(filename, H5F_ACC_RDONLY, acc_tpl);
VRFY((fid >= 0), "");
/* Release file-access template */
@@ -2390,7 +2353,7 @@ extend_readInd(void)
H5Eget_auto2(H5E_DEFAULT, &old_func, &old_client_data);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sget_simple_extent_dims(file_dataspace, dims, NULL);
VRFY((ret > 0), "H5Sget_simple_extent_dims succeeded");
@@ -2402,72 +2365,70 @@ extend_readInd(void)
H5Eset_auto2(H5E_DEFAULT, old_func, old_client_data);
H5Sclose(file_dataspace);
-
/* Read dataset1 using BYROW pattern */
/* set up dimensions of the slab this process accesses */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* read data independently */
- ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
VRFY((ret == 0), "dataset1 read verified correct");
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
H5Sclose(mem_dataspace);
H5Sclose(file_dataspace);
-
/* Read dataset2 using BYCOL pattern */
/* set up dimensions of the slab this process accesses */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset2);
+ file_dataspace = H5Dget_space(dataset2);
VRFY((file_dataspace >= 0), "");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* read data independently */
- ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
VRFY((ret == 0), "dataset2 read verified correct");
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
H5Sclose(mem_dataspace);
H5Sclose(file_dataspace);
@@ -2478,14 +2439,16 @@ extend_readInd(void)
ret = H5Dclose(dataset2);
VRFY((ret >= 0), "");
-
/* close the file collectively */
H5Fclose(fid);
/* release data buffers */
- if(data_array1) HDfree(data_array1);
- if(data_array2) HDfree(data_array2);
- if(data_origin1) HDfree(data_origin1);
+ if (data_array1)
+ HDfree(data_array1);
+ if (data_array2)
+ HDfree(data_array2);
+ if (data_origin1)
+ HDfree(data_origin1);
}
/*
@@ -2503,46 +2466,45 @@ extend_readInd(void)
void
extend_writeAll(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[MAX_RANK]; /* dataset dim sizes */
- hsize_t max_dims[MAX_RANK] =
- {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- hsize_t chunk_dims[MAX_RANK]; /* chunk sizes */
- hid_t dataset_pl; /* dataset create prop. list */
+ hsize_t dims[MAX_RANK]; /* dataset dim sizes */
+ hsize_t max_dims[MAX_RANK] = {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
+ DATATYPE * data_array1 = NULL; /* data buffer */
+ hsize_t chunk_dims[MAX_RANK]; /* chunk sizes */
+ hid_t dataset_pl; /* dataset create prop. list */
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
- hsize_t count[MAX_RANK]; /* for hyperslab setting */
- hsize_t stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t count[MAX_RANK]; /* for hyperslab setting */
+ hsize_t stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Extend independent write test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Extend independent write test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* setup chunk-size. Make sure sizes are > 0 */
chunk_dims[0] = (hsize_t)chunkdim0;
chunk_dims[1] = (hsize_t)chunkdim1;
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
@@ -2552,22 +2514,22 @@ extend_writeAll(void)
acc_tpl = create_faccess_plist(comm, info, facc_type);
VRFY((acc_tpl >= 0), "");
-/* Reduce the number of metadata cache slots, so that there are cache
- * collisions during the raw data I/O on the chunked dataset. This stresses
- * the metadata cache and tests for cache bugs. -QAK
- */
-{
- int mdc_nelmts;
- size_t rdcc_nelmts;
- size_t rdcc_nbytes;
- double rdcc_w0;
-
- ret = H5Pget_cache(acc_tpl,&mdc_nelmts,&rdcc_nelmts,&rdcc_nbytes,&rdcc_w0);
- VRFY((ret >= 0), "H5Pget_cache succeeded");
- mdc_nelmts=4;
- ret = H5Pset_cache(acc_tpl,mdc_nelmts,rdcc_nelmts,rdcc_nbytes,rdcc_w0);
- VRFY((ret >= 0), "H5Pset_cache succeeded");
-}
+ /* Reduce the number of metadata cache slots, so that there are cache
+ * collisions during the raw data I/O on the chunked dataset. This stresses
+ * the metadata cache and tests for cache bugs. -QAK
+ */
+ {
+ int mdc_nelmts;
+ size_t rdcc_nelmts;
+ size_t rdcc_nbytes;
+ double rdcc_w0;
+
+ ret = H5Pget_cache(acc_tpl, &mdc_nelmts, &rdcc_nelmts, &rdcc_nbytes, &rdcc_w0);
+ VRFY((ret >= 0), "H5Pget_cache succeeded");
+ mdc_nelmts = 4;
+ ret = H5Pset_cache(acc_tpl, mdc_nelmts, rdcc_nelmts, rdcc_nbytes, rdcc_w0);
+ VRFY((ret >= 0), "H5Pset_cache succeeded");
+ }
/* create the file collectively */
fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl);
@@ -2577,14 +2539,13 @@ extend_writeAll(void)
ret = H5Pclose(acc_tpl);
VRFY((ret >= 0), "");
-
/* --------------------------------------------------------------
* Define the dimensions of the overall datasets and create them.
* ------------------------------------------------------------- */
/* set up dataset storage chunk sizes and creation property list */
- if(VERBOSE_MED)
- HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
+ if (VERBOSE_MED)
+ HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
dataset_pl = H5Pcreate(H5P_DATASET_CREATE);
VRFY((dataset_pl >= 0), "H5Pcreate succeeded");
ret = H5Pset_chunk(dataset_pl, MAX_RANK, chunk_dims);
@@ -2593,7 +2554,7 @@ extend_writeAll(void)
/* setup dimensionality object */
/* start out with no rows, extend it later. */
dims[0] = dims[1] = 0;
- sid = H5Screate_simple (MAX_RANK, dims, max_dims);
+ sid = H5Screate_simple(MAX_RANK, dims, max_dims);
VRFY((sid >= 0), "H5Screate_simple succeeded");
/* create an extendible dataset collectively */
@@ -2608,8 +2569,6 @@ extend_writeAll(void)
H5Sclose(sid);
H5Pclose(dataset_pl);
-
-
/* -------------------------
* Test writing to dataset1
* -------------------------*/
@@ -2619,41 +2578,39 @@ extend_writeAll(void)
/* put some trivial data in the data_array */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* Extend its current dim sizes before writing */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- ret = H5Dset_extent(dataset1, dims);
+ ret = H5Dset_extent(dataset1, dims);
VRFY((ret >= 0), "H5Dset_extent succeeded");
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate xfer succeeded");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* write data collectively */
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
@@ -2661,7 +2618,6 @@ extend_writeAll(void)
H5Sclose(mem_dataspace);
H5Pclose(xfer_plist);
-
/* -------------------------
* Test writing to dataset2
* -------------------------*/
@@ -2671,40 +2627,38 @@ extend_writeAll(void)
/* put some trivial data in the data_array */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate xfer succeeded");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* Try write to dataset2 beyond its current dim sizes. Should fail. */
/* Temporary turn off auto error reporting */
H5Eget_auto2(H5E_DEFAULT, &old_func, &old_client_data);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset2);
+ file_dataspace = H5Dget_space(dataset2);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* write data independently. Should fail. */
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret < 0), "H5Dwrite failed as expected");
/* restore auto error reporting */
@@ -2714,18 +2668,17 @@ extend_writeAll(void)
/* Extend dataset2 and try again. Should succeed. */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- ret = H5Dset_extent(dataset2, dims);
+ ret = H5Dset_extent(dataset2, dims);
VRFY((ret >= 0), "H5Dset_extent succeeded");
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset2);
+ file_dataspace = H5Dget_space(dataset2);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* write data independently */
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
@@ -2736,7 +2689,6 @@ extend_writeAll(void)
ret = H5Pclose(xfer_plist);
VRFY((ret >= 0), "H5Pclose succeeded");
-
/* close dataset collectively */
ret = H5Dclose(dataset1);
VRFY((ret >= 0), "H5Dclose1 succeeded");
@@ -2747,49 +2699,50 @@ extend_writeAll(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) HDfree(data_array1);
+ if (data_array1)
+ HDfree(data_array1);
}
/* Example of using the parallel HDF5 library to read an extendible dataset */
void
extend_readAll(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[MAX_RANK]; /* dataset dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_array2 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ hsize_t dims[MAX_RANK]; /* dataset dim sizes */
+ DATATYPE * data_array1 = NULL; /* data buffer */
+ DATATYPE * data_array2 = NULL; /* data buffer */
+ DATATYPE * data_origin1 = NULL; /* expected data buffer */
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
- hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t count[MAX_RANK], stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Extend independent read test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Extend independent read test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
- data_array2 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_array2 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded");
- data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE));
+ data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0 * (size_t)dim1 * sizeof(DATATYPE));
VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
@@ -2800,7 +2753,7 @@ extend_readAll(void)
VRFY((acc_tpl >= 0), "");
/* open the file collectively */
- fid=H5Fopen(filename,H5F_ACC_RDONLY,acc_tpl);
+ fid = H5Fopen(filename, H5F_ACC_RDONLY, acc_tpl);
VRFY((fid >= 0), "");
/* Release file-access template */
@@ -2820,7 +2773,7 @@ extend_readAll(void)
H5Eget_auto2(H5E_DEFAULT, &old_func, &old_client_data);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sget_simple_extent_dims(file_dataspace, dims, NULL);
VRFY((ret > 0), "H5Sget_simple_extent_dims succeeded");
@@ -2832,95 +2785,91 @@ extend_readAll(void)
H5Eset_auto2(H5E_DEFAULT, old_func, old_client_data);
H5Sclose(file_dataspace);
-
/* Read dataset1 using BYROW pattern */
/* set up dimensions of the slab this process accesses */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate xfer succeeded");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* read data collectively */
- ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
VRFY((ret == 0), "dataset1 read verified correct");
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
H5Sclose(mem_dataspace);
H5Sclose(file_dataspace);
H5Pclose(xfer_plist);
-
/* Read dataset2 using BYCOL pattern */
/* set up dimensions of the slab this process accesses */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset2);
+ file_dataspace = H5Dget_space(dataset2);
VRFY((file_dataspace >= 0), "");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "");
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate xfer succeeded");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* read data collectively */
- ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
VRFY((ret == 0), "dataset2 read verified correct");
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
H5Sclose(mem_dataspace);
H5Sclose(file_dataspace);
@@ -2932,14 +2881,16 @@ extend_readAll(void)
ret = H5Dclose(dataset2);
VRFY((ret >= 0), "");
-
/* close the file collectively */
H5Fclose(fid);
/* release data buffers */
- if(data_array1) HDfree(data_array1);
- if(data_array2) HDfree(data_array2);
- if(data_origin1) HDfree(data_origin1);
+ if (data_array1)
+ HDfree(data_array1);
+ if (data_array2)
+ HDfree(data_array2);
+ if (data_origin1)
+ HDfree(data_origin1);
}
/*
@@ -2950,49 +2901,49 @@ extend_readAll(void)
void
compress_readAll(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t dcpl; /* Dataset creation property list */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t dataspace; /* Dataspace ID */
- hid_t dataset; /* Dataset ID */
- int rank=1; /* Dataspace rank */
- hsize_t dim=(hsize_t)dim0; /* Dataspace dimensions */
- unsigned u; /* Local index variable */
- unsigned chunk_opts; /* Chunk options */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t dcpl; /* Dataset creation property list */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t dataspace; /* Dataspace ID */
+ hid_t dataset; /* Dataset ID */
+ int rank = 1; /* Dataspace rank */
+ hsize_t dim = (hsize_t)dim0; /* Dataspace dimensions */
+ unsigned u; /* Local index variable */
+ unsigned chunk_opts; /* Chunk options */
unsigned disable_partial_chunk_filters; /* Whether filters are disabled on partial chunks */
- DATATYPE *data_read = NULL; /* data buffer */
- DATATYPE *data_orig = NULL; /* expected data buffer */
+ DATATYPE * data_read = NULL; /* data buffer */
+ DATATYPE * data_orig = NULL; /* expected data buffer */
const char *filename;
- MPI_Comm comm = test_comm;
- MPI_Info info = MPI_INFO_NULL;
- int mpi_size, mpi_rank;
- herr_t ret; /* Generic return value */
+ MPI_Comm comm = test_comm;
+ MPI_Info info = MPI_INFO_NULL;
+ int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Collective chunked dataset read test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Collective chunked dataset read test on file %s\n", filename);
/* Retrieve MPI parameters */
- MPI_Comm_size(comm,&mpi_size);
- MPI_Comm_rank(comm,&mpi_rank);
+ MPI_Comm_size(comm, &mpi_size);
+ MPI_Comm_rank(comm, &mpi_rank);
/* Allocate data buffer */
- data_orig = (DATATYPE *)HDmalloc((size_t)dim*sizeof(DATATYPE));
+ data_orig = (DATATYPE *)HDmalloc((size_t)dim * sizeof(DATATYPE));
VRFY((data_orig != NULL), "data_origin1 HDmalloc succeeded");
- data_read = (DATATYPE *)HDmalloc((size_t)dim*sizeof(DATATYPE));
+ data_read = (DATATYPE *)HDmalloc((size_t)dim * sizeof(DATATYPE));
VRFY((data_read != NULL), "data_array1 HDmalloc succeeded");
/* Initialize data buffers */
- for(u=0; u<dim;u++)
- data_orig[u]=(DATATYPE)u;
+ for (u = 0; u < dim; u++)
+ data_orig[u] = (DATATYPE)u;
/* Run test both with and without filters disabled on partial chunks */
- for(disable_partial_chunk_filters = 0; disable_partial_chunk_filters <= 1;
- disable_partial_chunk_filters++) {
+ for (disable_partial_chunk_filters = 0; disable_partial_chunk_filters <= 1;
+ disable_partial_chunk_filters++) {
/* Process zero creates the file with a compressed, chunked dataset */
- if(mpi_rank==0) {
- hsize_t chunk_dim; /* Chunk dimensions */
+ if (mpi_rank == 0) {
+ hsize_t chunk_dim; /* Chunk dimensions */
/* Create the file */
fid = H5Fcreate(h5_rmprefix(filename), H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
@@ -3007,18 +2958,18 @@ compress_readAll(void)
/* Use eight chunks */
chunk_dim = dim / 8;
- ret = H5Pset_chunk(dcpl, rank, &chunk_dim);
+ ret = H5Pset_chunk(dcpl, rank, &chunk_dim);
VRFY((ret >= 0), "H5Pset_chunk succeeded");
/* Set chunk options appropriately */
- if(disable_partial_chunk_filters) {
+ if (disable_partial_chunk_filters) {
ret = H5Pget_chunk_opts(dcpl, &chunk_opts);
- VRFY((ret>=0),"H5Pget_chunk_opts succeeded");
+ VRFY((ret >= 0), "H5Pget_chunk_opts succeeded");
chunk_opts |= H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS;
ret = H5Pset_chunk_opts(dcpl, chunk_opts);
- VRFY((ret>=0),"H5Pset_chunk_opts succeeded");
+ VRFY((ret >= 0), "H5Pset_chunk_opts succeeded");
} /* end if */
ret = H5Pset_deflate(dcpl, 9);
@@ -3029,7 +2980,8 @@ compress_readAll(void)
VRFY((dataspace > 0), "H5Screate_simple succeeded");
/* Create dataset */
- dataset = H5Dcreate2(fid, "compressed_data", H5T_NATIVE_INT, dataspace, H5P_DEFAULT, dcpl, H5P_DEFAULT);
+ dataset =
+ H5Dcreate2(fid, "compressed_data", H5T_NATIVE_INT, dataspace, H5P_DEFAULT, dcpl, H5P_DEFAULT);
VRFY((dataset > 0), "H5Dcreate2 succeeded");
/* Write compressed data */
@@ -3051,49 +3003,47 @@ compress_readAll(void)
MPI_Barrier(comm);
/* -------------------
- * OPEN AN HDF5 FILE
- * -------------------*/
+ * OPEN AN HDF5 FILE
+ * -------------------*/
/* setup file access template */
acc_tpl = create_faccess_plist(comm, info, facc_type);
VRFY((acc_tpl >= 0), "");
/* open the file collectively */
- fid=H5Fopen(filename,H5F_ACC_RDWR,acc_tpl);
+ fid = H5Fopen(filename, H5F_ACC_RDWR, acc_tpl);
VRFY((fid > 0), "H5Fopen succeeded");
/* Release file-access template */
ret = H5Pclose(acc_tpl);
VRFY((ret >= 0), "H5Pclose succeeded");
-
/* Open dataset with compressed chunks */
dataset = H5Dopen2(fid, "compressed_data", H5P_DEFAULT);
VRFY((dataset > 0), "H5Dopen2 succeeded");
/* Try reading & writing data */
- if(dataset>0) {
+ if (dataset > 0) {
/* Create dataset transfer property list */
xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist > 0), "H5Pcreate succeeded");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
- if(dxfer_coll_type == DXFER_INDEPENDENT_IO) {
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0),"set independent IO collectively succeeded");
+ if (dxfer_coll_type == DXFER_INDEPENDENT_IO) {
+ ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist, H5FD_MPIO_INDIVIDUAL_IO);
+ VRFY((ret >= 0), "set independent IO collectively succeeded");
}
-
/* Try reading the data */
ret = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer_plist, data_read);
VRFY((ret >= 0), "H5Dread succeeded");
/* Verify data read */
- for(u=0; u<dim; u++)
- if(data_orig[u]!=data_read[u]) {
- HDprintf("Line #%d: written!=retrieved: data_orig[%u]=%d, data_read[%u]=%d\n",__LINE__,
- (unsigned)u,data_orig[u],(unsigned)u,data_read[u]);
+ for (u = 0; u < dim; u++)
+ if (data_orig[u] != data_read[u]) {
+ HDprintf("Line #%d: written!=retrieved: data_orig[%u]=%d, data_read[%u]=%d\n", __LINE__,
+ (unsigned)u, data_orig[u], (unsigned)u, data_read[u]);
nerrors++;
}
@@ -3114,8 +3064,10 @@ compress_readAll(void)
} /* end for */
/* release data buffers */
- if(data_read) HDfree(data_read);
- if(data_orig) HDfree(data_orig);
+ if (data_read)
+ HDfree(data_read);
+ if (data_orig)
+ HDfree(data_orig);
}
#endif /* H5_HAVE_FILTER_DEFLATE */
@@ -3134,39 +3086,39 @@ compress_readAll(void)
void
none_selection_chunk(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[MAX_RANK]; /* dataset dim sizes */
- DATATYPE *data_origin = NULL; /* data buffer */
- DATATYPE *data_array = NULL; /* data buffer */
- hsize_t chunk_dims[MAX_RANK]; /* chunk sizes */
- hid_t dataset_pl; /* dataset create prop. list */
+ hsize_t dims[MAX_RANK]; /* dataset dim sizes */
+ DATATYPE * data_origin = NULL; /* data buffer */
+ DATATYPE * data_array = NULL; /* data buffer */
+ hsize_t chunk_dims[MAX_RANK]; /* chunk sizes */
+ hid_t dataset_pl; /* dataset create prop. list */
- hsize_t start[MAX_RANK]; /* for hyperslab setting */
- hsize_t count[MAX_RANK]; /* for hyperslab setting */
- hsize_t stride[MAX_RANK]; /* for hyperslab setting */
- hsize_t block[MAX_RANK]; /* for hyperslab setting */
- hsize_t mstart[MAX_RANK]; /* for data buffer in memory */
+ hsize_t start[MAX_RANK]; /* for hyperslab setting */
+ hsize_t count[MAX_RANK]; /* for hyperslab setting */
+ hsize_t stride[MAX_RANK]; /* for hyperslab setting */
+ hsize_t block[MAX_RANK]; /* for hyperslab setting */
+ hsize_t mstart[MAX_RANK]; /* for data buffer in memory */
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
MPI_Comm comm = test_comm;
MPI_Info info = MPI_INFO_NULL;
filename = GetTestParameters();
- if(VERBOSE_MED)
- HDprintf("Extend independent write test on file %s\n", filename);
+ if (VERBOSE_MED)
+ HDprintf("Extend independent write test on file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
/* setup chunk-size. Make sure sizes are > 0 */
chunk_dims[0] = (hsize_t)chunkdim0;
@@ -3192,8 +3144,8 @@ none_selection_chunk(void)
* ------------------------------------------------------------- */
/* set up dataset storage chunk sizes and creation property list */
- if(VERBOSE_MED)
- HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
+ if (VERBOSE_MED)
+ HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
dataset_pl = H5Pcreate(H5P_DATASET_CREATE);
VRFY((dataset_pl >= 0), "H5Pcreate succeeded");
ret = H5Pset_chunk(dataset_pl, MAX_RANK, chunk_dims);
@@ -3202,7 +3154,7 @@ none_selection_chunk(void)
/* setup dimensionality object */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- sid = H5Screate_simple(MAX_RANK, dims, NULL);
+ sid = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
/* create an extendible dataset collectively */
@@ -3225,65 +3177,64 @@ none_selection_chunk(void)
/* allocate memory for data buffer. Only allocate enough buffer for
* each processor's data. */
- if(mpi_rank) {
- data_origin = (DATATYPE *)HDmalloc(block[0]*block[1]*sizeof(DATATYPE));
+ if (mpi_rank) {
+ data_origin = (DATATYPE *)HDmalloc(block[0] * block[1] * sizeof(DATATYPE));
VRFY((data_origin != NULL), "data_origin HDmalloc succeeded");
- data_array = (DATATYPE *)HDmalloc(block[0]*block[1]*sizeof(DATATYPE));
+ data_array = (DATATYPE *)HDmalloc(block[0] * block[1] * sizeof(DATATYPE));
VRFY((data_array != NULL), "data_array HDmalloc succeeded");
/* put some trivial data in the data_array */
mstart[0] = mstart[1] = 0;
dataset_fill(mstart, block, data_origin);
MESG("data_array initialized");
- if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(mstart, block, data_origin);
+ if (VERBOSE_MED) {
+ MESG("data_array created");
+ dataset_print(mstart, block, data_origin);
}
}
/* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple (MAX_RANK, block, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
/* Process 0 has no selection */
- if(!mpi_rank) {
+ if (!mpi_rank) {
ret = H5Sselect_none(mem_dataspace);
VRFY((ret >= 0), "H5Sselect_none succeeded");
}
/* create a file dataspace independently */
- file_dataspace = H5Dget_space (dataset1);
+ file_dataspace = H5Dget_space(dataset1);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* Process 0 has no selection */
- if(!mpi_rank) {
+ if (!mpi_rank) {
ret = H5Sselect_none(file_dataspace);
VRFY((ret >= 0), "H5Sselect_none succeeded");
}
/* set up the collective transfer properties list */
- xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate xfer succeeded");
ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
/* write data collectively */
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_origin);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_origin);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* read data independently */
- ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array);
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
- if(mpi_rank) {
+ if (mpi_rank) {
ret = dataset_vrfy(mstart, count, stride, block, data_array, data_origin);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
}
/* -------------------------
@@ -3293,19 +3244,18 @@ none_selection_chunk(void)
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
/* write data collectively */
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_origin);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, xfer_plist, data_origin);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* read data independently */
- ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array);
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, data_array);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
- if(mpi_rank) {
+ if (mpi_rank) {
ret = dataset_vrfy(mstart, count, stride, block, data_array, data_origin);
- if(ret) nerrors++;
+ if (ret)
+ nerrors++;
}
/* release resource */
@@ -3316,7 +3266,6 @@ none_selection_chunk(void)
ret = H5Pclose(xfer_plist);
VRFY((ret >= 0), "H5Pclose succeeded");
-
/* close dataset collectively */
ret = H5Dclose(dataset1);
VRFY((ret >= 0), "H5Dclose1 succeeded");
@@ -3327,11 +3276,12 @@ none_selection_chunk(void)
H5Fclose(fid);
/* release data buffers */
- if(data_origin) HDfree(data_origin);
- if(data_array) HDfree(data_array);
+ if (data_origin)
+ HDfree(data_origin);
+ if (data_array)
+ HDfree(data_array);
}
-
/* Function: test_actual_io_mode
*
* Purpose: tests one specific case of collective I/O and checks that the
@@ -3395,63 +3345,61 @@ none_selection_chunk(void)
* Date: 2011-04-06
*/
static void
-test_actual_io_mode(int selection_mode) {
- H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_write = -1;
- H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_read = -1;
- H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_expected = -1;
- H5D_mpio_actual_io_mode_t actual_io_mode_write = -1;
- H5D_mpio_actual_io_mode_t actual_io_mode_read = -1;
- H5D_mpio_actual_io_mode_t actual_io_mode_expected = -1;
- const char * filename;
- const char * test_name;
- hbool_t direct_multi_chunk_io;
- hbool_t multi_chunk_io;
- hbool_t is_chunked;
- hbool_t is_collective;
- int mpi_size = -1;
- int mpi_rank = -1;
- int length;
- int * buffer;
- int i;
- MPI_Comm mpi_comm = MPI_COMM_NULL;
- MPI_Info mpi_info = MPI_INFO_NULL;
- hid_t fid = -1;
- hid_t sid = -1;
- hid_t dataset = -1;
- hid_t data_type = H5T_NATIVE_INT;
- hid_t fapl_id = -1;
- hid_t mem_space = -1;
- hid_t file_space = -1;
- hid_t dcpl = -1;
- hid_t dxpl_write = -1;
- hid_t dxpl_read = -1;
- hsize_t dims[MAX_RANK];
- hsize_t chunk_dims[MAX_RANK];
- hsize_t start[MAX_RANK];
- hsize_t stride[MAX_RANK];
- hsize_t count[MAX_RANK];
- hsize_t block[MAX_RANK];
- char message[256];
- herr_t ret;
+test_actual_io_mode(int selection_mode)
+{
+ H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_write = -1;
+ H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_read = -1;
+ H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_expected = -1;
+ H5D_mpio_actual_io_mode_t actual_io_mode_write = -1;
+ H5D_mpio_actual_io_mode_t actual_io_mode_read = -1;
+ H5D_mpio_actual_io_mode_t actual_io_mode_expected = -1;
+ const char * filename;
+ const char * test_name;
+ hbool_t direct_multi_chunk_io;
+ hbool_t multi_chunk_io;
+ hbool_t is_chunked;
+ hbool_t is_collective;
+ int mpi_size = -1;
+ int mpi_rank = -1;
+ int length;
+ int * buffer;
+ int i;
+ MPI_Comm mpi_comm = MPI_COMM_NULL;
+ MPI_Info mpi_info = MPI_INFO_NULL;
+ hid_t fid = -1;
+ hid_t sid = -1;
+ hid_t dataset = -1;
+ hid_t data_type = H5T_NATIVE_INT;
+ hid_t fapl_id = -1;
+ hid_t mem_space = -1;
+ hid_t file_space = -1;
+ hid_t dcpl = -1;
+ hid_t dxpl_write = -1;
+ hid_t dxpl_read = -1;
+ hsize_t dims[MAX_RANK];
+ hsize_t chunk_dims[MAX_RANK];
+ hsize_t start[MAX_RANK];
+ hsize_t stride[MAX_RANK];
+ hsize_t count[MAX_RANK];
+ hsize_t block[MAX_RANK];
+ char message[256];
+ herr_t ret;
/* Set up some flags to make some future if statements slightly more readable */
- direct_multi_chunk_io = (
- selection_mode == TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_IND ||
- selection_mode == TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_COL );
+ direct_multi_chunk_io = (selection_mode == TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_IND ||
+ selection_mode == TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_COL);
/* Note: RESET performs the same tests as MULTI_CHUNK_MIX_DISAGREE and then
* tests independent I/O
*/
- multi_chunk_io = (
- selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_IND ||
- selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_COL ||
- selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_MIX ||
- selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_MIX_DISAGREE ||
- selection_mode == TEST_ACTUAL_IO_RESET );
+ multi_chunk_io =
+ (selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_IND ||
+ selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_COL ||
+ selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_MIX ||
+ selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_MIX_DISAGREE || selection_mode == TEST_ACTUAL_IO_RESET);
- is_chunked = (
- selection_mode != TEST_ACTUAL_IO_CONTIGUOUS &&
- selection_mode != TEST_ACTUAL_IO_NO_COLLECTIVE);
+ is_chunked =
+ (selection_mode != TEST_ACTUAL_IO_CONTIGUOUS && selection_mode != TEST_ACTUAL_IO_NO_COLLECTIVE);
is_collective = selection_mode != TEST_ACTUAL_IO_NO_COLLECTIVE;
@@ -3480,7 +3428,7 @@ test_actual_io_mode(int selection_mode) {
/* Create the basic Space */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- sid = H5Screate_simple (MAX_RANK, dims, NULL);
+ sid = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
/* Create the dataset creation plist */
@@ -3488,17 +3436,16 @@ test_actual_io_mode(int selection_mode) {
VRFY((dcpl >= 0), "dataset creation plist created successfully");
/* If we are not testing contiguous datasets */
- if(is_chunked) {
+ if (is_chunked) {
/* Set up chunk information. */
- chunk_dims[0] = dims[0]/(hsize_t)mpi_size;
+ chunk_dims[0] = dims[0] / (hsize_t)mpi_size;
chunk_dims[1] = dims[1];
- ret = H5Pset_chunk(dcpl, 2, chunk_dims);
- VRFY((ret >= 0),"chunk creation property list succeeded");
+ ret = H5Pset_chunk(dcpl, 2, chunk_dims);
+ VRFY((ret >= 0), "chunk creation property list succeeded");
}
/* Create the dataset */
- dataset = H5Dcreate2(fid, "actual_io", data_type, sid, H5P_DEFAULT,
- dcpl, H5P_DEFAULT);
+ dataset = H5Dcreate2(fid, "actual_io", data_type, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT);
VRFY((dataset >= 0), "H5Dcreate2() dataset succeeded");
/* Create the file dataspace */
@@ -3507,7 +3454,7 @@ test_actual_io_mode(int selection_mode) {
/* Choose a selection method based on the type of I/O we want to occur,
* and also set up some selection-dependeent test info. */
- switch(selection_mode) {
+ switch (selection_mode) {
/* Independent I/O with optimization */
case TEST_ACTUAL_IO_MULTI_CHUNK_IND:
@@ -3518,9 +3465,9 @@ test_actual_io_mode(int selection_mode) {
*/
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
- test_name = "Multi Chunk - Independent";
+ test_name = "Multi Chunk - Independent";
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
- actual_io_mode_expected = H5D_MPIO_CHUNK_INDEPENDENT;
+ actual_io_mode_expected = H5D_MPIO_CHUNK_INDEPENDENT;
break;
/* Collective I/O with optimization */
@@ -3532,9 +3479,9 @@ test_actual_io_mode(int selection_mode) {
*/
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
- test_name = "Multi Chunk - Collective";
+ test_name = "Multi Chunk - Collective";
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
- if(mpi_size > 1)
+ if (mpi_size > 1)
actual_io_mode_expected = H5D_MPIO_CHUNK_COLLECTIVE;
else
actual_io_mode_expected = H5D_MPIO_CHUNK_INDEPENDENT;
@@ -3551,24 +3498,25 @@ test_actual_io_mode(int selection_mode) {
* and at least one chunk independently, reporting mixed I/O.
*/
- if(mpi_rank == 0) {
- /* Select the first column */
- slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
- } else {
+ if (mpi_rank == 0) {
+ /* Select the first column */
+ slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
+ }
+ else {
/* Select the first and the nth chunk in the nth column */
- block[0] = (hsize_t)(dim0 / mpi_size);
- block[1] = (hsize_t)(dim1 / mpi_size);
- count[0] = 2;
- count[1] = 1;
+ block[0] = (hsize_t)(dim0 / mpi_size);
+ block[1] = (hsize_t)(dim1 / mpi_size);
+ count[0] = 2;
+ count[1] = 1;
stride[0] = (hsize_t)mpi_rank * block[0];
stride[1] = 1;
- start[0] = 0;
- start[1] = (hsize_t)mpi_rank*block[1];
+ start[0] = 0;
+ start[1] = (hsize_t)mpi_rank * block[1];
}
- test_name = "Multi Chunk - Mixed";
+ test_name = "Multi Chunk - Mixed";
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
- actual_io_mode_expected = H5D_MPIO_CHUNK_MIXED;
+ actual_io_mode_expected = H5D_MPIO_CHUNK_MIXED;
break;
/* RESET tests that the properties are properly reset to defaults each time I/O is
@@ -3591,20 +3539,21 @@ test_actual_io_mode(int selection_mode) {
* collectively, and their other chunk indpendently, reporting mixed I/O.
*/
- if(mpi_rank == 0) {
- /* Select the first chunk in the first column */
- slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
- block[0] = block[0] / (hsize_t)mpi_size;
- } else {
+ if (mpi_rank == 0) {
+ /* Select the first chunk in the first column */
+ slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
+ block[0] = block[0] / (hsize_t)mpi_size;
+ }
+ else {
/* Select the first and the nth chunk in the nth column */
- block[0] = (hsize_t)(dim0 / mpi_size);
- block[1] = (hsize_t)(dim1 / mpi_size);
- count[0] = 2;
- count[1] = 1;
+ block[0] = (hsize_t)(dim0 / mpi_size);
+ block[1] = (hsize_t)(dim1 / mpi_size);
+ count[0] = 2;
+ count[1] = 1;
stride[0] = (hsize_t)mpi_rank * block[0];
stride[1] = 1;
- start[0] = 0;
- start[1] = (hsize_t)mpi_rank*block[1];
+ start[0] = 0;
+ start[1] = (hsize_t)mpi_rank * block[1];
}
/* If the testname was not already set by the RESET case */
@@ -3614,8 +3563,8 @@ test_actual_io_mode(int selection_mode) {
test_name = "Multi Chunk - Mixed (Disagreement)";
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
- if(mpi_size > 1) {
- if(mpi_rank == 0)
+ if (mpi_size > 1) {
+ if (mpi_rank == 0)
actual_io_mode_expected = H5D_MPIO_CHUNK_COLLECTIVE;
else
actual_io_mode_expected = H5D_MPIO_CHUNK_MIXED;
@@ -3630,9 +3579,9 @@ test_actual_io_mode(int selection_mode) {
/* Nothing special; link chunk I/O is forced in the dxpl settings. */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
- test_name = "Link Chunk";
+ test_name = "Link Chunk";
actual_chunk_opt_mode_expected = H5D_MPIO_LINK_CHUNK;
- actual_io_mode_expected = H5D_MPIO_CHUNK_COLLECTIVE;
+ actual_io_mode_expected = H5D_MPIO_CHUNK_COLLECTIVE;
break;
/* Contiguous Dataset */
@@ -3641,23 +3590,23 @@ test_actual_io_mode(int selection_mode) {
* collective I/O */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
- test_name = "Contiguous";
+ test_name = "Contiguous";
actual_chunk_opt_mode_expected = H5D_MPIO_NO_CHUNK_OPTIMIZATION;
- actual_io_mode_expected = H5D_MPIO_CONTIGUOUS_COLLECTIVE;
+ actual_io_mode_expected = H5D_MPIO_CONTIGUOUS_COLLECTIVE;
break;
case TEST_ACTUAL_IO_NO_COLLECTIVE:
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
- test_name = "Independent";
+ test_name = "Independent";
actual_chunk_opt_mode_expected = H5D_MPIO_NO_CHUNK_OPTIMIZATION;
- actual_io_mode_expected = H5D_MPIO_NO_COLLECTIVE;
+ actual_io_mode_expected = H5D_MPIO_NO_COLLECTIVE;
break;
default:
- test_name = "Undefined Selection Mode";
+ test_name = "Undefined Selection Mode";
actual_chunk_opt_mode_expected = -1;
- actual_io_mode_expected = -1;
+ actual_io_mode_expected = -1;
break;
}
@@ -3667,7 +3616,7 @@ test_actual_io_mode(int selection_mode) {
/* Create a memory dataspace mirroring the dataset and select the same hyperslab
* as in the file space.
*/
- mem_space = H5Screate_simple (MAX_RANK, dims, NULL);
+ mem_space = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((mem_space >= 0), "mem_space created");
ret = H5Sselect_hyperslab(mem_space, H5S_SELECT_SET, start, stride, count, block);
@@ -3679,7 +3628,7 @@ test_actual_io_mode(int selection_mode) {
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * (size_t)length);
VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
- for(i = 0; i < length; i++)
+ for (i = 0; i < length; i++)
buffer[i] = i;
/* Set up the dxpl for the write */
@@ -3687,7 +3636,7 @@ test_actual_io_mode(int selection_mode) {
VRFY((dxpl_write >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded");
/* Set collective I/O properties in the dxpl. */
- if(is_collective) {
+ if (is_collective) {
/* Request collective I/O */
ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
@@ -3697,19 +3646,19 @@ test_actual_io_mode(int selection_mode) {
* multi chunk io instead of link chunk io.
* This is via deault.
*/
- if(multi_chunk_io) {
+ if (multi_chunk_io) {
/* force multi-chunk-io by threshold */
- ret = H5Pset_dxpl_mpio_chunk_opt_num(dxpl_write, (unsigned) mpi_size*2);
+ ret = H5Pset_dxpl_mpio_chunk_opt_num(dxpl_write, (unsigned)mpi_size * 2);
VRFY((ret >= 0), "H5Pset_dxpl_mpio_chunk_opt_num succeeded");
/* set this to manipulate testing senario about allocating processes
* to chunks */
- ret = H5Pset_dxpl_mpio_chunk_opt_ratio(dxpl_write, (unsigned) 99);
+ ret = H5Pset_dxpl_mpio_chunk_opt_ratio(dxpl_write, (unsigned)99);
VRFY((ret >= 0), "H5Pset_dxpl_mpio_chunk_opt_ratio succeeded");
}
/* Set directly go to multi-chunk-io without threshold calc. */
- if(direct_multi_chunk_io) {
+ if (direct_multi_chunk_io) {
/* set for multi chunk io by property*/
ret = H5Pset_dxpl_mpio_chunk_opt(dxpl_write, H5FD_MPIO_CHUNK_MULTI_IO);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
@@ -3722,43 +3671,47 @@ test_actual_io_mode(int selection_mode) {
/* Write */
ret = H5Dwrite(dataset, data_type, mem_space, file_space, dxpl_write, buffer);
- if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout);
+ if (ret < 0)
+ H5Eprint2(H5E_DEFAULT, stdout);
VRFY((ret >= 0), "H5Dwrite() dataset multichunk write succeeded");
/* Retreive Actual io valuess */
ret = H5Pget_mpio_actual_io_mode(dxpl_write, &actual_io_mode_write);
- VRFY((ret >= 0), "retriving actual io mode suceeded" );
+ VRFY((ret >= 0), "retriving actual io mode suceeded");
ret = H5Pget_mpio_actual_chunk_opt_mode(dxpl_write, &actual_chunk_opt_mode_write);
- VRFY((ret >= 0), "retriving actual chunk opt mode succeeded" );
+ VRFY((ret >= 0), "retriving actual chunk opt mode succeeded");
/* Read */
ret = H5Dread(dataset, data_type, mem_space, file_space, dxpl_read, buffer);
- if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout);
+ if (ret < 0)
+ H5Eprint2(H5E_DEFAULT, stdout);
VRFY((ret >= 0), "H5Dread() dataset multichunk read succeeded");
/* Retreive Actual io values */
ret = H5Pget_mpio_actual_io_mode(dxpl_read, &actual_io_mode_read);
- VRFY((ret >= 0), "retriving actual io mode succeeded" );
+ VRFY((ret >= 0), "retriving actual io mode succeeded");
ret = H5Pget_mpio_actual_chunk_opt_mode(dxpl_read, &actual_chunk_opt_mode_read);
- VRFY((ret >= 0), "retriving actual chunk opt mode succeeded" );
+ VRFY((ret >= 0), "retriving actual chunk opt mode succeeded");
/* Check write vs read */
VRFY((actual_io_mode_read == actual_io_mode_write),
- "reading and writing are the same for actual_io_mode");
+ "reading and writing are the same for actual_io_mode");
VRFY((actual_chunk_opt_mode_read == actual_chunk_opt_mode_write),
- "reading and writing are the same for actual_chunk_opt_mode");
+ "reading and writing are the same for actual_chunk_opt_mode");
/* Test values */
- if(actual_chunk_opt_mode_expected != (H5D_mpio_actual_chunk_opt_mode_t) -1 && actual_io_mode_expected != (H5D_mpio_actual_io_mode_t) -1) {
- HDsprintf(message, "Actual Chunk Opt Mode has the correct value for %s.\n",test_name);
+ if (actual_chunk_opt_mode_expected != (H5D_mpio_actual_chunk_opt_mode_t)-1 &&
+ actual_io_mode_expected != (H5D_mpio_actual_io_mode_t)-1) {
+ HDsprintf(message, "Actual Chunk Opt Mode has the correct value for %s.\n", test_name);
VRFY((actual_chunk_opt_mode_write == actual_chunk_opt_mode_expected), message);
- HDsprintf(message, "Actual IO Mode has the correct value for %s.\n",test_name);
+ HDsprintf(message, "Actual IO Mode has the correct value for %s.\n", test_name);
VRFY((actual_io_mode_write == actual_io_mode_expected), message);
- } else {
- HDfprintf(stderr, "%s %d -> (%d,%d)\n", test_name, mpi_rank,
- actual_chunk_opt_mode_write, actual_io_mode_write);
+ }
+ else {
+ HDfprintf(stderr, "%s %d -> (%d,%d)\n", test_name, mpi_rank, actual_chunk_opt_mode_write,
+ actual_io_mode_write);
}
/* To test that the property is succesfully reset to the default, we perform some
@@ -3778,14 +3731,14 @@ test_actual_io_mode(int selection_mode) {
/* Check Properties */
ret = H5Pget_mpio_actual_io_mode(dxpl_write, &actual_io_mode_write);
- VRFY( (ret >= 0), "retriving actual io mode succeeded" );
+ VRFY((ret >= 0), "retriving actual io mode succeeded");
ret = H5Pget_mpio_actual_chunk_opt_mode(dxpl_write, &actual_chunk_opt_mode_write);
- VRFY( (ret >= 0), "retriving actual chunk opt mode succeeded" );
+ VRFY((ret >= 0), "retriving actual chunk opt mode succeeded");
VRFY(actual_chunk_opt_mode_write == H5D_MPIO_NO_CHUNK_OPTIMIZATION,
- "actual_chunk_opt_mode has correct value for reset write (independent)");
+ "actual_chunk_opt_mode has correct value for reset write (independent)");
VRFY(actual_io_mode_write == H5D_MPIO_NO_COLLECTIVE,
- "actual_io_mode has correct value for reset write (independent)");
+ "actual_io_mode has correct value for reset write (independent)");
/* Read */
ret = H5Dread(dataset, data_type, H5S_ALL, H5S_ALL, dxpl_read, buffer);
@@ -3793,15 +3746,15 @@ test_actual_io_mode(int selection_mode) {
/* Check Properties */
ret = H5Pget_mpio_actual_io_mode(dxpl_read, &actual_io_mode_read);
- VRFY( (ret >= 0), "retriving actual io mode succeeded" );
+ VRFY((ret >= 0), "retriving actual io mode succeeded");
ret = H5Pget_mpio_actual_chunk_opt_mode(dxpl_read, &actual_chunk_opt_mode_read);
- VRFY( (ret >= 0), "retriving actual chunk opt mode succeeded" );
+ VRFY((ret >= 0), "retriving actual chunk opt mode succeeded");
VRFY(actual_chunk_opt_mode_read == H5D_MPIO_NO_CHUNK_OPTIMIZATION,
- "actual_chunk_opt_mode has correct value for reset read (independent)");
+ "actual_chunk_opt_mode has correct value for reset read (independent)");
VRFY(actual_io_mode_read == H5D_MPIO_NO_COLLECTIVE,
- "actual_io_mode has correct value for reset read (independent)");
- }
+ "actual_io_mode has correct value for reset read (independent)");
+ }
}
/* Release some resources */
@@ -3818,7 +3771,6 @@ test_actual_io_mode(int selection_mode) {
return;
}
-
/* Function: actual_io_mode_tests
*
* Purpose: Tests all possible cases of the actual_io_mode property.
@@ -3827,7 +3779,8 @@ test_actual_io_mode(int selection_mode) {
* Date: 2011-04-06
*/
void
-actual_io_mode_tests(void) {
+actual_io_mode_tests(void)
+{
int mpi_size = -1;
int mpi_rank = -1;
MPI_Comm_size(test_comm, &mpi_size);
@@ -3902,7 +3855,8 @@ actual_io_mode_tests(void) {
*
* TEST_FILTERS:
* Test for using filter (checksum) as the cause of breaking collective I/O.
- * Note: TEST_FILTERS mode will not work until H5Dcreate and H5write is supported for mpio and filter feature. Use test_no_collective_cause_mode_filter() function instead.
+ * Note: TEST_FILTERS mode will not work until H5Dcreate and H5write is supported for mpio and filter
+ * feature. Use test_no_collective_cause_mode_filter() function instead.
*
*
* Programmer: Jonathan Kim
@@ -3912,35 +3866,35 @@ actual_io_mode_tests(void) {
static void
test_no_collective_cause_mode(int selection_mode)
{
- uint32_t no_collective_cause_local_write = 0;
- uint32_t no_collective_cause_local_read = 0;
- uint32_t no_collective_cause_local_expected = 0;
- uint32_t no_collective_cause_global_write = 0;
- uint32_t no_collective_cause_global_read = 0;
+ uint32_t no_collective_cause_local_write = 0;
+ uint32_t no_collective_cause_local_read = 0;
+ uint32_t no_collective_cause_local_expected = 0;
+ uint32_t no_collective_cause_global_write = 0;
+ uint32_t no_collective_cause_global_read = 0;
uint32_t no_collective_cause_global_expected = 0;
// hsize_t coord[NELM][MAX_RANK];
- const char * filename;
- const char * test_name;
- hbool_t is_chunked=1;
- hbool_t is_independent=0;
- int mpi_size = -1;
- int mpi_rank = -1;
+ const char *filename;
+ const char *test_name;
+ hbool_t is_chunked = 1;
+ hbool_t is_independent = 0;
+ int mpi_size = -1;
+ int mpi_rank = -1;
int length;
- int * buffer;
+ int * buffer;
int i;
MPI_Comm mpi_comm;
MPI_Info mpi_info;
- hid_t fid = -1;
- hid_t sid = -1;
- hid_t dataset = -1;
- hid_t data_type = H5T_NATIVE_INT;
- hid_t fapl_id = -1;
- hid_t dcpl = -1;
+ hid_t fid = -1;
+ hid_t sid = -1;
+ hid_t dataset = -1;
+ hid_t data_type = H5T_NATIVE_INT;
+ hid_t fapl_id = -1;
+ hid_t dcpl = -1;
hid_t dxpl_write = -1;
- hid_t dxpl_read = -1;
+ hid_t dxpl_read = -1;
hsize_t dims[MAX_RANK];
- hid_t mem_space = -1;
+ hid_t mem_space = -1;
hid_t file_space = -1;
hsize_t chunk_dims[MAX_RANK];
herr_t ret;
@@ -3948,7 +3902,7 @@ test_no_collective_cause_mode(int selection_mode)
H5Z_filter_t filter_info;
#endif /* LATER */
/* set to global value as default */
- int l_facc_type = facc_type;
+ int l_facc_type = facc_type;
char message[256];
/* Set up MPI parameters */
@@ -3967,27 +3921,29 @@ test_no_collective_cause_mode(int selection_mode)
VRFY((dcpl >= 0), "dataset creation plist created successfully");
if (selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT) {
- ret = H5Pset_layout (dcpl, H5D_COMPACT);
- VRFY((ret >= 0),"set COMPACT layout succeeded");
+ ret = H5Pset_layout(dcpl, H5D_COMPACT);
+ VRFY((ret >= 0), "set COMPACT layout succeeded");
is_chunked = 0;
}
if (selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL) {
- ret = H5Pset_external (dcpl, FILE_EXTERNAL, (off_t) 0, H5F_UNLIMITED);
- VRFY((ret >= 0),"set EXTERNAL file layout succeeded");
+ ret = H5Pset_external(dcpl, FILE_EXTERNAL, (off_t)0, H5F_UNLIMITED);
+ VRFY((ret >= 0), "set EXTERNAL file layout succeeded");
is_chunked = 0;
}
#ifdef LATER /* fletcher32 */
if (selection_mode & TEST_FILTERS) {
ret = H5Zfilter_avail(H5Z_FILTER_FLETCHER32);
- VRFY ((ret >=0 ), "Fletcher32 filter is available.\n");
+ VRFY((ret >= 0), "Fletcher32 filter is available.\n");
- ret = H5Zget_filter_info (H5Z_FILTER_FLETCHER32, &filter_info);
- VRFY ( ( (filter_info & H5Z_FILTER_CONFIG_ENCODE_ENABLED) || (filter_info & H5Z_FILTER_CONFIG_DECODE_ENABLED) ) , "Fletcher32 filter encoding and decoding available.\n");
+ ret = H5Zget_filter_info(H5Z_FILTER_FLETCHER32, &filter_info);
+ VRFY(((filter_info & H5Z_FILTER_CONFIG_ENCODE_ENABLED) ||
+ (filter_info & H5Z_FILTER_CONFIG_DECODE_ENABLED)),
+ "Fletcher32 filter encoding and decoding available.\n");
ret = H5Pset_fletcher32(dcpl);
- VRFY((ret >= 0),"set filter (flecher32) succeeded");
+ VRFY((ret >= 0), "set filter (flecher32) succeeded");
}
#endif /* LATER */
@@ -4007,11 +3963,10 @@ test_no_collective_cause_mode(int selection_mode)
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
}
- sid = H5Screate_simple (MAX_RANK, dims, NULL);
+ sid = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
}
-
filename = (const char *)GetTestParameters();
HDassert(filename != NULL);
@@ -4025,20 +3980,18 @@ test_no_collective_cause_mode(int selection_mode)
VRFY((fid >= 0), "H5Fcreate succeeded");
/* If we are not testing contiguous datasets */
- if(is_chunked) {
+ if (is_chunked) {
/* Set up chunk information. */
- chunk_dims[0] = dims[0]/(hsize_t)mpi_size;
+ chunk_dims[0] = dims[0] / (hsize_t)mpi_size;
chunk_dims[1] = dims[1];
- ret = H5Pset_chunk(dcpl, 2, chunk_dims);
- VRFY((ret >= 0),"chunk creation property list succeeded");
+ ret = H5Pset_chunk(dcpl, 2, chunk_dims);
+ VRFY((ret >= 0), "chunk creation property list succeeded");
}
-
/* Create the dataset */
dataset = H5Dcreate2(fid, "nocolcause", data_type, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT);
VRFY((dataset >= 0), "H5Dcreate2() dataset succeeded");
-
/*
* Set expected causes and some tweaks based on the type of test
*/
@@ -4078,14 +4031,14 @@ test_no_collective_cause_mode(int selection_mode)
#endif /* LATER */
if (selection_mode & TEST_COLLECTIVE) {
- test_name = "Broken Collective I/O - Not Broken";
- no_collective_cause_local_expected = H5D_MPIO_COLLECTIVE;
+ test_name = "Broken Collective I/O - Not Broken";
+ no_collective_cause_local_expected = H5D_MPIO_COLLECTIVE;
no_collective_cause_global_expected = H5D_MPIO_COLLECTIVE;
}
if (selection_mode & TEST_SET_INDEPENDENT) {
- test_name = "Broken Collective I/O - Independent";
- no_collective_cause_local_expected = H5D_MPIO_SET_INDEPENDENT;
+ test_name = "Broken Collective I/O - Independent";
+ no_collective_cause_local_expected = H5D_MPIO_SET_INDEPENDENT;
no_collective_cause_global_expected = H5D_MPIO_SET_INDEPENDENT;
/* switch to independent io */
is_independent = 1;
@@ -4095,7 +4048,7 @@ test_no_collective_cause_mode(int selection_mode)
if (selection_mode & TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES ||
selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL) {
file_space = H5S_ALL;
- mem_space = H5S_ALL;
+ mem_space = H5S_ALL;
}
else {
/* Get the file dataspace */
@@ -4103,7 +4056,7 @@ test_no_collective_cause_mode(int selection_mode)
VRFY((file_space >= 0), "H5Dget_space succeeded");
/* Create the memory dataspace */
- mem_space = H5Screate_simple (MAX_RANK, dims, NULL);
+ mem_space = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((mem_space >= 0), "mem_space created");
}
@@ -4113,14 +4066,14 @@ test_no_collective_cause_mode(int selection_mode)
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * (size_t)length);
VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
- for(i = 0; i < length; i++)
+ for (i = 0; i < length; i++)
buffer[i] = i;
/* Set up the dxpl for the write */
dxpl_write = H5Pcreate(H5P_DATASET_XFER);
VRFY((dxpl_write >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded");
- if(is_independent) {
+ if (is_independent) {
/* Set Independent I/O */
ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_INDEPENDENT);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
@@ -4129,11 +4082,10 @@ test_no_collective_cause_mode(int selection_mode)
/* Set Collective I/O */
ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
-
}
if (selection_mode & TEST_DATA_TRANSFORMS) {
- ret = H5Pset_data_transform (dxpl_write, "x+1");
+ ret = H5Pset_data_transform(dxpl_write, "x+1");
VRFY((ret >= 0), "H5Pset_data_transform succeeded");
}
@@ -4143,14 +4095,14 @@ test_no_collective_cause_mode(int selection_mode)
/* Write */
ret = H5Dwrite(dataset, data_type, mem_space, file_space, dxpl_write, buffer);
- if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout);
+ if (ret < 0)
+ H5Eprint2(H5E_DEFAULT, stdout);
VRFY((ret >= 0), "H5Dwrite() dataset multichunk write succeeded");
-
/* Get the cause of broken collective I/O */
- ret = H5Pget_mpio_no_collective_cause (dxpl_write, &no_collective_cause_local_write, &no_collective_cause_global_write);
- VRFY((ret >= 0), "retriving no collective cause succeeded" );
-
+ ret = H5Pget_mpio_no_collective_cause(dxpl_write, &no_collective_cause_local_write,
+ &no_collective_cause_global_write);
+ VRFY((ret >= 0), "retriving no collective cause succeeded");
/*---------------------
* Test Read access
@@ -4163,25 +4115,27 @@ test_no_collective_cause_mode(int selection_mode)
/* Read */
ret = H5Dread(dataset, data_type, mem_space, file_space, dxpl_read, buffer);
- if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout);
+ if (ret < 0)
+ H5Eprint2(H5E_DEFAULT, stdout);
VRFY((ret >= 0), "H5Dread() dataset multichunk read succeeded");
/* Get the cause of broken collective I/O */
- ret = H5Pget_mpio_no_collective_cause (dxpl_read, &no_collective_cause_local_read, &no_collective_cause_global_read);
- VRFY((ret >= 0), "retriving no collective cause succeeded" );
+ ret = H5Pget_mpio_no_collective_cause(dxpl_read, &no_collective_cause_local_read,
+ &no_collective_cause_global_read);
+ VRFY((ret >= 0), "retriving no collective cause succeeded");
/* Check write vs read */
VRFY((no_collective_cause_local_read == no_collective_cause_local_write),
- "reading and writing are the same for local cause of Broken Collective I/O");
+ "reading and writing are the same for local cause of Broken Collective I/O");
VRFY((no_collective_cause_global_read == no_collective_cause_global_write),
- "reading and writing are the same for global cause of Broken Collective I/O");
+ "reading and writing are the same for global cause of Broken Collective I/O");
/* Test values */
- HDmemset (message, 0, sizeof (message));
- HDsprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n",test_name);
+ HDmemset(message, 0, sizeof(message));
+ HDsprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n", test_name);
VRFY((no_collective_cause_local_write == no_collective_cause_local_expected), message);
- HDmemset (message, 0, sizeof (message));
- HDsprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n",test_name);
+ HDmemset(message, 0, sizeof(message));
+ HDsprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n", test_name);
VRFY((no_collective_cause_global_write == no_collective_cause_global_expected), message);
/* Release some resources */
@@ -4212,7 +4166,6 @@ test_no_collective_cause_mode(int selection_mode)
return;
}
-
#if 0
/*
* Function: test_no_collective_cause_mode_filter
@@ -4267,7 +4220,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
herr_t ret;
#ifdef LATER /* fletcher32 */
H5Z_filter_t filter_info;
-#endif /* LATER */
+#endif /* LATER */
char message[256];
/* Set up MPI parameters */
@@ -4295,7 +4248,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
ret = H5Pset_fletcher32(dcpl);
VRFY((ret >= 0),"set filter (flecher32) succeeded");
-#endif /* LATER */
+#endif /* LATER */
}
else {
VRFY(0, "Unexpected mode, only test for TEST_FILTERS_READ.");
@@ -4337,7 +4290,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
test_name = "Broken Collective I/O - Filter is required";
no_collective_cause_local_expected = H5D_MPIO_FILTERS;
no_collective_cause_global_expected = H5D_MPIO_FILTERS;
-#endif /* LATER */
+#endif /* LATER */
/* Get the file dataspace */
file_space = H5Dget_space(dataset);
@@ -4460,27 +4413,28 @@ no_collective_cause_tests(void)
/*
* Test individual cause
*/
- test_no_collective_cause_mode (TEST_COLLECTIVE);
- test_no_collective_cause_mode (TEST_SET_INDEPENDENT);
- test_no_collective_cause_mode (TEST_DATATYPE_CONVERSION);
- test_no_collective_cause_mode (TEST_DATA_TRANSFORMS);
- test_no_collective_cause_mode (TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES);
- test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT);
- test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL);
+ test_no_collective_cause_mode(TEST_COLLECTIVE);
+ test_no_collective_cause_mode(TEST_SET_INDEPENDENT);
+ test_no_collective_cause_mode(TEST_DATATYPE_CONVERSION);
+ test_no_collective_cause_mode(TEST_DATA_TRANSFORMS);
+ test_no_collective_cause_mode(TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES);
+ test_no_collective_cause_mode(TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT);
+ test_no_collective_cause_mode(TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL);
#ifdef LATER /* fletcher32 */
- /* TODO: use this instead of below TEST_FILTERS_READ when H5Dcreate and
- * H5Dwrite is ready for mpio + filter feature.
- */
+ /* TODO: use this instead of below TEST_FILTERS_READ when H5Dcreate and
+ * H5Dwrite is ready for mpio + filter feature.
+ */
/* test_no_collective_cause_mode (TEST_FILTERS); */
- test_no_collective_cause_mode_filter (TEST_FILTERS_READ);
+ test_no_collective_cause_mode_filter(TEST_FILTERS_READ);
#endif /* LATER */
/*
* Test combined causes
*/
- test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL | TEST_DATATYPE_CONVERSION);
- test_no_collective_cause_mode (TEST_DATATYPE_CONVERSION | TEST_DATA_TRANSFORMS);
- test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL | TEST_DATATYPE_CONVERSION | TEST_DATA_TRANSFORMS);
+ test_no_collective_cause_mode(TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL | TEST_DATATYPE_CONVERSION);
+ test_no_collective_cause_mode(TEST_DATATYPE_CONVERSION | TEST_DATA_TRANSFORMS);
+ test_no_collective_cause_mode(TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL | TEST_DATATYPE_CONVERSION |
+ TEST_DATA_TRANSFORMS);
return;
}
@@ -4499,41 +4453,42 @@ no_collective_cause_tests(void)
void
dataset_atomicity(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t sid; /* Dataspace ID */
- hid_t dataset1; /* Dataset IDs */
- hsize_t dims[MAX_RANK]; /* dataset dim sizes */
- int *write_buf = NULL; /* data buffer */
- int *read_buf = NULL; /* data buffer */
- int buf_size;
- hid_t dataset2;
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* Memory dataspace ID */
- hsize_t start[MAX_RANK];
- hsize_t stride[MAX_RANK];
- hsize_t count[MAX_RANK];
- hsize_t block[MAX_RANK];
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t sid; /* Dataspace ID */
+ hid_t dataset1; /* Dataset IDs */
+ hsize_t dims[MAX_RANK]; /* dataset dim sizes */
+ int * write_buf = NULL; /* data buffer */
+ int * read_buf = NULL; /* data buffer */
+ int buf_size;
+ hid_t dataset2;
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* Memory dataspace ID */
+ hsize_t start[MAX_RANK];
+ hsize_t stride[MAX_RANK];
+ hsize_t count[MAX_RANK];
+ hsize_t block[MAX_RANK];
const char *filename;
- herr_t ret; /* Generic return value */
- int mpi_size, mpi_rank;
- int i, j, k;
- hbool_t atomicity = FALSE;
- MPI_Comm comm = test_comm;
- MPI_Info info = MPI_INFO_NULL;
-
- dim0 = 64; dim1 = 32;
+ herr_t ret; /* Generic return value */
+ int mpi_size, mpi_rank;
+ int i, j, k;
+ hbool_t atomicity = FALSE;
+ MPI_Comm comm = test_comm;
+ MPI_Info info = MPI_INFO_NULL;
+
+ dim0 = 64;
+ dim1 = 32;
filename = GetTestParameters();
if (facc_type != FACC_MPIO) {
HDprintf("Atomicity tests will not work without the MPIO VFD\n");
return;
}
- if(VERBOSE_MED)
+ if (VERBOSE_MED)
HDprintf("atomic writes to file %s\n", filename);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
buf_size = dim0 * dim1;
/* allocate memory for data buffer */
@@ -4558,26 +4513,22 @@ dataset_atomicity(void)
/* setup dimensionality object */
dims[0] = (hsize_t)dim0;
dims[1] = (hsize_t)dim1;
- sid = H5Screate_simple (MAX_RANK, dims, NULL);
+ sid = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
/* create datasets */
- dataset1 = H5Dcreate2(fid, DATASETNAME5, H5T_NATIVE_INT, sid,
- H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ dataset1 = H5Dcreate2(fid, DATASETNAME5, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
VRFY((dataset1 >= 0), "H5Dcreate2 succeeded");
- dataset2 = H5Dcreate2(fid, DATASETNAME6, H5T_NATIVE_INT, sid,
- H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ dataset2 = H5Dcreate2(fid, DATASETNAME6, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
VRFY((dataset2 >= 0), "H5Dcreate2 succeeded");
/* initialize datasets to 0s */
if (0 == mpi_rank) {
- ret = H5Dwrite(dataset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
- H5P_DEFAULT, write_buf);
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, write_buf);
VRFY((ret >= 0), "H5Dwrite dataset1 succeeded");
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
- H5P_DEFAULT, write_buf);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, write_buf);
VRFY((ret >= 0), "H5Dwrite dataset2 succeeded");
}
@@ -4590,39 +4541,39 @@ dataset_atomicity(void)
ret = H5Fclose(fid);
VRFY((ret >= 0), "H5Fclose succeeded");
- MPI_Barrier (comm);
+ MPI_Barrier(comm);
/* make sure setting atomicity fails on a serial file ID */
/* file locking allows only one file open (serial) for writing */
- if(MAINPROCESS){
- fid=H5Fopen(filename,H5F_ACC_RDWR,H5P_DEFAULT);
+ if (MAINPROCESS) {
+ fid = H5Fopen(filename, H5F_ACC_RDWR, H5P_DEFAULT);
VRFY((fid >= 0), "H5Fopen succeeed");
}
/* should fail */
- ret = H5Fset_mpi_atomicity(fid , TRUE);
+ ret = H5Fset_mpi_atomicity(fid, TRUE);
VRFY((ret == FAIL), "H5Fset_mpi_atomicity failed");
- if(MAINPROCESS){
+ if (MAINPROCESS) {
ret = H5Fclose(fid);
VRFY((ret >= 0), "H5Fclose succeeded");
}
- MPI_Barrier (comm);
+ MPI_Barrier(comm);
/* setup file access template */
acc_tpl = create_faccess_plist(comm, info, facc_type);
VRFY((acc_tpl >= 0), "");
/* open the file collectively */
- fid=H5Fopen(filename,H5F_ACC_RDWR,acc_tpl);
+ fid = H5Fopen(filename, H5F_ACC_RDWR, acc_tpl);
VRFY((fid >= 0), "H5Fopen succeeded");
/* Release file-access template */
ret = H5Pclose(acc_tpl);
VRFY((ret >= 0), "H5Pclose succeeded");
- ret = H5Fset_mpi_atomicity(fid , TRUE);
+ ret = H5Fset_mpi_atomicity(fid, TRUE);
VRFY((ret >= 0), "H5Fset_mpi_atomicity succeeded");
/* open dataset1 (contiguous case) */
@@ -4630,22 +4581,22 @@ dataset_atomicity(void)
VRFY((dataset1 >= 0), "H5Dopen2 succeeded");
if (0 == mpi_rank) {
- for (i=0 ; i<buf_size ; i++) {
+ for (i = 0; i < buf_size; i++) {
write_buf[i] = 5;
}
}
else {
- for (i=0 ; i<buf_size ; i++) {
+ for (i = 0; i < buf_size; i++) {
read_buf[i] = 8;
}
}
/* check that the atomicity flag is set */
- ret = H5Fget_mpi_atomicity(fid , &atomicity);
+ ret = H5Fget_mpi_atomicity(fid, &atomicity);
VRFY((ret >= 0), "atomcity get failed");
VRFY((atomicity == TRUE), "atomcity set failed");
- MPI_Barrier (comm);
+ MPI_Barrier(comm);
/* Process 0 writes contiguously to the entire dataset */
if (0 == mpi_rank) {
@@ -4658,12 +4609,14 @@ dataset_atomicity(void)
VRFY((ret >= 0), "H5Dwrite() dataset multichunk write succeeded");
}
- if(VERBOSE_MED) {
- i=0;j=0;k=0;
- for (i=0 ; i<dim0 ; i++) {
- HDprintf ("\n");
- for (j=0 ; j<dim1 ; j++)
- HDprintf ("%d ", read_buf[k++]);
+ if (VERBOSE_MED) {
+ i = 0;
+ j = 0;
+ k = 0;
+ for (i = 0; i < dim0; i++) {
+ HDprintf("\n");
+ for (j = 0; j < dim1; j++)
+ HDprintf("%d ", read_buf[k++]);
}
}
@@ -4675,10 +4628,11 @@ dataset_atomicity(void)
VRFY((compare == 0 || compare == 5),
"Atomicity Test Failed Process %d: Value read should be 0 or 5\n");
- for (i=1; i<buf_size; i++) {
+ for (i = 1; i < buf_size; i++) {
if (read_buf[i] != compare) {
- HDprintf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank, i, read_buf[i], compare);
- nerrors ++;
+ HDprintf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank, i,
+ read_buf[i], compare);
+ nerrors++;
}
}
}
@@ -4687,8 +4641,10 @@ dataset_atomicity(void)
VRFY((ret >= 0), "H5D close succeeded");
/* release data buffers */
- if(write_buf) HDfree(write_buf);
- if(read_buf) HDfree(read_buf);
+ if (write_buf)
+ HDfree(write_buf);
+ if (read_buf)
+ HDfree(read_buf);
/* open dataset2 (non-contiguous case) */
dataset2 = H5Dopen2(fid, DATASETNAME6, H5P_DEFAULT);
@@ -4701,69 +4657,68 @@ dataset_atomicity(void)
read_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int));
VRFY((read_buf != NULL), "read_buf HDcalloc succeeded");
- for (i=0 ; i<buf_size ; i++) {
+ for (i = 0; i < buf_size; i++) {
write_buf[i] = 5;
}
- for (i=0 ; i<buf_size ; i++) {
+ for (i = 0; i < buf_size; i++) {
read_buf[i] = 8;
}
atomicity = FALSE;
/* check that the atomicity flag is set */
- ret = H5Fget_mpi_atomicity(fid , &atomicity);
+ ret = H5Fget_mpi_atomicity(fid, &atomicity);
VRFY((ret >= 0), "atomcity get failed");
VRFY((atomicity == TRUE), "atomcity set failed");
-
- block[0] = (hsize_t)(dim0/mpi_size) - 1;
- block[1] = (hsize_t)(dim1/mpi_size) - 1;
+ block[0] = (hsize_t)(dim0 / mpi_size) - 1;
+ block[1] = (hsize_t)(dim1 / mpi_size) - 1;
stride[0] = block[0] + 1;
stride[1] = block[1] + 1;
- count[0] = (hsize_t)mpi_size;
- count[1] = (hsize_t)mpi_size;
- start[0] = 0;
- start[1] = 0;
+ count[0] = (hsize_t)mpi_size;
+ count[1] = (hsize_t)mpi_size;
+ start[0] = 0;
+ start[1] = 0;
/* create a file dataspace */
- file_dataspace = H5Dget_space (dataset2);
+ file_dataspace = H5Dget_space(dataset2);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* create a memory dataspace */
- mem_dataspace = H5Screate_simple (MAX_RANK, dims, NULL);
+ mem_dataspace = H5Screate_simple(MAX_RANK, dims, NULL);
VRFY((mem_dataspace >= 0), "");
ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
- MPI_Barrier (comm);
+ MPI_Barrier(comm);
/* Process 0 writes to the dataset */
if (0 == mpi_rank) {
- ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, write_buf);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, write_buf);
VRFY((ret >= 0), "H5Dwrite dataset2 succeeded");
}
/* All processes wait for the write to finish. This works because
atomicity is set to true */
- MPI_Barrier (comm);
+ MPI_Barrier(comm);
/* The other processes read the entire dataset */
if (0 != mpi_rank) {
- ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, read_buf);
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace, H5P_DEFAULT, read_buf);
VRFY((ret >= 0), "H5Dread dataset2 succeeded");
}
- if(VERBOSE_MED) {
+ if (VERBOSE_MED) {
if (mpi_rank == 1) {
- i=0;j=0;k=0;
- for (i=0 ; i<dim0 ; i++) {
- HDprintf ("\n");
- for (j=0 ; j<dim1 ; j++)
- HDprintf ("%d ", read_buf[k++]);
+ i = 0;
+ j = 0;
+ k = 0;
+ for (i = 0; i < dim0; i++) {
+ HDprintf("\n");
+ for (j = 0; j < dim1; j++)
+ HDprintf("%d ", read_buf[k++]);
}
- HDprintf ("\n");
+ HDprintf("\n");
}
}
@@ -4771,32 +4726,36 @@ dataset_atomicity(void)
as 5 (read happened after process 0 wrote to dataset 1) */
if (0 != mpi_rank) {
int compare;
- i=0;j=0;k=0;
+ i = 0;
+ j = 0;
+ k = 0;
compare = 5;
- for (i=0 ; i<dim0 ; i++) {
- if ((hsize_t)i >= (hsize_t)mpi_rank*(block[0]+1)) {
+ for (i = 0; i < dim0; i++) {
+ if ((hsize_t)i >= (hsize_t)mpi_rank * (block[0] + 1)) {
break;
}
- if (((hsize_t)i+1)%(block[0]+1)==0) {
+ if (((hsize_t)i + 1) % (block[0] + 1) == 0) {
k += dim1;
continue;
}
- for (j=0 ; j<dim1 ; j++) {
- if ((hsize_t)j >= (hsize_t)mpi_rank*(block[1]+1)) {
- H5_CHECKED_ASSIGN(k, int, (hsize_t)dim1 - (hsize_t)mpi_rank*(block[1]+1) + (hsize_t)k, hsize_t);
+ for (j = 0; j < dim1; j++) {
+ if ((hsize_t)j >= (hsize_t)mpi_rank * (block[1] + 1)) {
+ H5_CHECKED_ASSIGN(k, int, (hsize_t)dim1 - (hsize_t)mpi_rank * (block[1] + 1) + (hsize_t)k,
+ hsize_t);
break;
}
- if (((hsize_t)j+1)%(block[1]+1)==0) {
+ if (((hsize_t)j + 1) % (block[1] + 1) == 0) {
k++;
continue;
}
else if (compare != read_buf[k]) {
- HDprintf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank, k, read_buf[k], compare);
+ HDprintf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank,
+ k, read_buf[k], compare);
nerrors++;
}
- k ++;
+ k++;
}
}
}
@@ -4809,12 +4768,13 @@ dataset_atomicity(void)
VRFY((ret >= 0), "H5Sclose succeeded");
/* release data buffers */
- if(write_buf) HDfree(write_buf);
- if(read_buf) HDfree(read_buf);
+ if (write_buf)
+ HDfree(write_buf);
+ if (read_buf)
+ HDfree(read_buf);
ret = H5Fclose(fid);
VRFY((ret >= 0), "H5Fclose succeeded");
-
}
/* Function: dense_attr_test
@@ -4827,21 +4787,21 @@ dataset_atomicity(void)
void
test_dense_attr(void)
{
- int mpi_size, mpi_rank;
- hid_t fpid, fid;
- hid_t gid, gpid;
- hid_t atFileSpace, atid;
- hsize_t atDims[1] = {10000};
- herr_t status;
+ int mpi_size, mpi_rank;
+ hid_t fpid, fid;
+ hid_t gid, gpid;
+ hid_t atFileSpace, atid;
+ hsize_t atDims[1] = {10000};
+ herr_t status;
const char *filename;
/* get filename */
filename = (const char *)GetTestParameters();
- HDassert( filename != NULL );
+ HDassert(filename != NULL);
/* set up MPI parameters */
- MPI_Comm_size(test_comm,&mpi_size);
- MPI_Comm_rank(test_comm,&mpi_rank);
+ MPI_Comm_size(test_comm, &mpi_size);
+ MPI_Comm_rank(test_comm, &mpi_rank);
fpid = H5Pcreate(H5P_FILE_ACCESS);
VRFY((fpid > 0), "H5Pcreate succeeded");
@@ -4881,12 +4841,11 @@ test_dense_attr(void)
return;
}
-
int
main(int argc, char **argv)
{
- int express_test;
- int mpi_size, mpi_rank; /* mpi variables */
+ int express_test;
+ int mpi_size, mpi_rank; /* mpi variables */
hsize_t oldsize, newsize = 1048576;
#ifndef H5_HAVE_WIN32_API
@@ -4895,7 +4854,6 @@ main(int argc, char **argv)
HDsetbuf(stdout, NULL);
#endif
-
MPI_Init(&argc, &argv);
MPI_Comm_size(test_comm, &mpi_size);
MPI_Comm_rank(test_comm, &mpi_rank);
@@ -4904,7 +4862,7 @@ main(int argc, char **argv)
dim1 = BIG_Y_FACTOR;
dim2 = BIG_Z_FACTOR;
- if (MAINPROCESS){
+ if (MAINPROCESS) {
HDprintf("===================================\n");
HDprintf("2 GByte IO TESTS START\n");
HDprintf("2 MPI ranks will run the tests...\n");
@@ -4912,7 +4870,7 @@ main(int argc, char **argv)
h5_show_hostname();
}
- if (H5dont_atexit() < 0){
+ if (H5dont_atexit() < 0) {
HDprintf("Failed to turn off atexit processing. Continue.\n");
};
H5open();
@@ -4923,52 +4881,46 @@ main(int argc, char **argv)
if (mpi_size > 2) {
int rank_color = 0;
- if (mpi_rank >= 2) rank_color = 1;
+ if (mpi_rank >= 2)
+ rank_color = 1;
if (MPI_Comm_split(test_comm, rank_color, mpi_rank, &test_comm) != MPI_SUCCESS) {
HDprintf("MPI returned an error. Exiting\n");
- }
+ }
}
/* Initialize testing framework */
if (mpi_rank < 2) {
- TestInit(argv[0], usage, parse_options);
+ TestInit(argv[0], usage, parse_options);
- /* Parse command line arguments */
- TestParseCmdLine(argc, argv);
+ /* Parse command line arguments */
+ TestParseCmdLine(argc, argv);
- AddTest("idsetw", dataset_writeInd, NULL,
- "dataset independent write", PARATESTFILE);
+ AddTest("idsetw", dataset_writeInd, NULL, "dataset independent write", PARATESTFILE);
- AddTest("idsetr", dataset_readInd, NULL,
- "dataset independent read", PARATESTFILE);
+ AddTest("idsetr", dataset_readInd, NULL, "dataset independent read", PARATESTFILE);
- AddTest("cdsetw", dataset_writeAll, NULL,
- "dataset collective write", PARATESTFILE);
+ AddTest("cdsetw", dataset_writeAll, NULL, "dataset collective write", PARATESTFILE);
- AddTest("cdsetr", dataset_readAll, NULL,
- "dataset collective read", PARATESTFILE);
+ AddTest("cdsetr", dataset_readAll, NULL, "dataset collective read", PARATESTFILE);
- AddTest("eidsetw2", extend_writeInd2, NULL,
- "extendible dataset independent write #2", PARATESTFILE);
+ AddTest("eidsetw2", extend_writeInd2, NULL, "extendible dataset independent write #2", PARATESTFILE);
- AddTest("selnone", none_selection_chunk, NULL,
- "chunked dataset with none-selection", PARATESTFILE);
+ AddTest("selnone", none_selection_chunk, NULL, "chunked dataset with none-selection", PARATESTFILE);
#ifdef H5_HAVE_FILTER_DEFLATE
- AddTest("cmpdsetr", compress_readAll, NULL,
- "compressed dataset collective read", PARATESTFILE);
+ AddTest("cmpdsetr", compress_readAll, NULL, "compressed dataset collective read", PARATESTFILE);
#endif /* H5_HAVE_FILTER_DEFLATE */
- /* Display testing information */
- if (MAINPROCESS)
- TestInfo(argv[0]);
+ /* Display testing information */
+ if (MAINPROCESS)
+ TestInfo(argv[0]);
- /* setup file access property list */
- fapl = H5Pcreate (H5P_FILE_ACCESS);
- H5Pset_fapl_mpio(fapl, test_comm, MPI_INFO_NULL);
+ /* setup file access property list */
+ fapl = H5Pcreate(H5P_FILE_ACCESS);
+ H5Pset_fapl_mpio(fapl, test_comm, MPI_INFO_NULL);
- /* Perform requested testing */
- PerformTests();
+ /* Perform requested testing */
+ PerformTests();
}
MPI_Barrier(MPI_COMM_WORLD);