summaryrefslogtreecommitdiffstats
path: root/testpar/t_bigio.c
diff options
context:
space:
mode:
Diffstat (limited to 'testpar/t_bigio.c')
-rw-r--r--testpar/t_bigio.c528
1 files changed, 264 insertions, 264 deletions
diff --git a/testpar/t_bigio.c b/testpar/t_bigio.c
index 1d882b8..9ca077c 100644
--- a/testpar/t_bigio.c
+++ b/testpar/t_bigio.c
@@ -1,7 +1,7 @@
#include "hdf5.h"
#include "testphdf5.h"
-#include "H5Dprivate.h" /* For Chunk tests */
+#include "H5Dprivate.h" /* For Chunk tests */
/* FILENAME and filenames must have the same number of names */
const char *FILENAME[2]={ "bigio_test.h5",
@@ -17,7 +17,7 @@ const char *FILENAME[2]={ "bigio_test.h5",
#define MAINPROCESS (!mpi_rank) /* define process 0 as main process */
/* Constants definitions */
-#define RANK 2
+#define RANK 2
#define IN_ORDER 1
#define OUT_OF_ORDER 2
@@ -33,12 +33,12 @@ const char *FILENAME[2]={ "bigio_test.h5",
#define HYPER 1
#define POINT 2
-#define ALL 3
+#define ALL 3
/* Dataset data type. Int's can be easily octo dumped. */
typedef hsize_t B_DATATYPE;
-int facc_type = FACC_MPIO; /*Test file access type */
+int facc_type = FACC_MPIO; /*Test file access type */
int dxfer_coll_type = DXFER_COLLECTIVE_IO;
size_t bigcount = DXFER_BIGCOUNT;
int nerrors = 0;
@@ -54,12 +54,12 @@ hid_t create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type);
/*
* Setup the coordinates for point selection.
*/
-static void
+static void
set_coords(hsize_t start[],
hsize_t count[],
hsize_t stride[],
hsize_t block[],
- size_t num_points,
+ size_t num_points,
hsize_t coords[],
int order)
{
@@ -99,10 +99,10 @@ fill_datasets(hsize_t start[], hsize_t block[], B_DATATYPE * dataset)
/* put some trivial data in the data_array */
for (i=0; i < block[0]; i++){
- for (j=0; j < block[1]; j++){
- *dataptr = (B_DATATYPE)((i+start[0])*100 + (j+start[1]+1));
- dataptr++;
- }
+ for (j=0; j < block[1]; j++){
+ *dataptr = (B_DATATYPE)((i+start[0])*100 + (j+start[1]+1));
+ dataptr++;
+ }
}
}
@@ -113,7 +113,7 @@ void point_set(hsize_t start[],
hsize_t count[],
hsize_t stride[],
hsize_t block[],
- size_t num_points,
+ size_t num_points,
hsize_t coords[],
int order)
{
@@ -143,13 +143,13 @@ void point_set(hsize_t start[],
}
if(VERBOSE_MED) {
- printf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total datapoints=%lu\n",
+ HDprintf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total datapoints=%lu\n",
(unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
(unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
(unsigned long)(block[0] * block[1] * count[0] * count[1]));
k = 0;
for(i = 0; i < num_points ; i++) {
- printf("(%d, %d)\n", (int)coords[k], (int)coords[k + 1]);
+ HDprintf("(%d, %d)\n", (int)coords[k], (int)coords[k + 1]);
k += 2;
}
}
@@ -165,19 +165,19 @@ dataset_print(hsize_t start[], hsize_t block[], B_DATATYPE * dataset)
hsize_t i, j;
/* print the column heading */
- printf("%-8s", "Cols:");
+ HDprintf("%-8s", "Cols:");
for (j=0; j < block[1]; j++){
- printf("%3lu ", (unsigned long)(start[1]+j));
+ HDprintf("%3lu ", (unsigned long)(start[1]+j));
}
- printf("\n");
+ HDprintf("\n");
/* print the slab data */
for (i=0; i < block[0]; i++){
- printf("Row %2lu: ", (unsigned long)(i+start[0]));
- for (j=0; j < block[1]; j++){
- printf("%llu ", *dataptr++);
- }
- printf("\n");
+ HDprintf("Row %2lu: ", (unsigned long)(i+start[0]));
+ for (j=0; j < block[1]; j++){
+ HDprintf("%llu ", *dataptr++);
+ }
+ HDprintf("\n");
}
}
@@ -193,90 +193,90 @@ verify_data(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[],
/* print it if VERBOSE_MED */
if(VERBOSE_MED) {
- printf("verify_data dumping:::\n");
- printf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
- (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
- (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
- printf("original values:\n");
- dataset_print(start, block, original);
- printf("compared values:\n");
- dataset_print(start, block, dataset);
+ HDprintf("verify_data dumping:::\n");
+ HDprintf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
+ (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
+ HDprintf("original values:\n");
+ dataset_print(start, block, original);
+ HDprintf("compared values:\n");
+ dataset_print(start, block, dataset);
}
vrfyerrs = 0;
for (i=0; i < block[0]; i++){
- for (j=0; j < block[1]; j++){
- if(*dataset != *original){
- if(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
- printf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %llu, got %llu\n",
+ for (j=0; j < block[1]; j++){
+ if(*dataset != *original){
+ if(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
+ HDprintf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %llu, got %llu\n",
(unsigned long)i, (unsigned long)j,
(unsigned long)(i+start[0]), (unsigned long)(j+start[1]),
*(original), *(dataset));
- }
- dataset++;
- original++;
- }
- }
+ }
+ dataset++;
+ original++;
+ }
+ }
}
if(vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
- printf("[more errors ...]\n");
+ HDprintf("[more errors ...]\n");
if(vrfyerrs)
- printf("%d errors found in verify_data\n", vrfyerrs);
+ HDprintf("%d errors found in verify_data\n", vrfyerrs);
return(vrfyerrs);
}
/* Set up the selection */
static void
ccslab_set(int mpi_rank,
- int mpi_size,
- hsize_t start[],
- hsize_t count[],
- hsize_t stride[],
- hsize_t block[],
- int mode)
+ int mpi_size,
+ hsize_t start[],
+ hsize_t count[],
+ hsize_t stride[],
+ hsize_t block[],
+ int mode)
{
switch (mode){
case BYROW_CONT:
- /* Each process takes a slabs of rows. */
- block[0] = 1;
- block[1] = 1;
- stride[0] = 1;
- stride[1] = 1;
- count[0] = space_dim1;
- count[1] = space_dim2;
- start[0] = mpi_rank*count[0];
- start[1] = 0;
-
- break;
+ /* Each process takes a slabs of rows. */
+ block[0] = 1;
+ block[1] = 1;
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = space_dim1;
+ count[1] = space_dim2;
+ start[0] = mpi_rank*count[0];
+ start[1] = 0;
+
+ break;
case BYROW_DISCONT:
- /* Each process takes several disjoint blocks. */
- block[0] = 1;
- block[1] = 1;
+ /* Each process takes several disjoint blocks. */
+ block[0] = 1;
+ block[1] = 1;
stride[0] = 3;
stride[1] = 3;
count[0] = space_dim1/(stride[0]*block[0]);
count[1] = (space_dim2)/(stride[1]*block[1]);
- start[0] = space_dim1*mpi_rank;
- start[1] = 0;
+ start[0] = space_dim1*mpi_rank;
+ start[1] = 0;
- break;
+ break;
case BYROW_SELECTNONE:
- /* Each process takes a slabs of rows, there are
+ /* Each process takes a slabs of rows, there are
no selections for the last process. */
- block[0] = 1;
- block[1] = 1;
- stride[0] = 1;
- stride[1] = 1;
- count[0] = ((mpi_rank >= MAX(1,(mpi_size-2)))?0:space_dim1);
- count[1] = space_dim2;
- start[0] = mpi_rank*count[0];
- start[1] = 0;
+ block[0] = 1;
+ block[1] = 1;
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = ((mpi_rank >= MAX(1,(mpi_size-2)))?0:space_dim1);
+ count[1] = space_dim2;
+ start[0] = mpi_rank*count[0];
+ start[1] = 0;
- break;
+ break;
case BYROW_SELECTUNBALANCE:
/* The first one-third of the number of processes only
@@ -284,14 +284,14 @@ ccslab_set(int mpi_rank,
half of the domain. */
block[0] = 1;
- count[0] = 2;
+ count[0] = 2;
stride[0] = space_dim1*mpi_size/4+1;
block[1] = space_dim2;
count[1] = 1;
start[1] = 0;
stride[1] = 1;
- if((mpi_rank *3)<(mpi_size*2)) start[0] = mpi_rank;
- else start[0] = 1 + space_dim1*mpi_size/2 + (mpi_rank-2*mpi_size/3);
+ if((mpi_rank *3)<(mpi_size*2)) start[0] = mpi_rank;
+ else start[0] = 1 + space_dim1*mpi_size/2 + (mpi_rank-2*mpi_size/3);
break;
case BYROW_SELECTINCHUNK:
@@ -299,33 +299,33 @@ ccslab_set(int mpi_rank,
block[0] = 1;
count[0] = 1;
- start[0] = mpi_rank*space_dim1;
+ start[0] = mpi_rank*space_dim1;
stride[0]= 1;
- block[1] = space_dim2;
- count[1] = 1;
- stride[1]= 1;
- start[1] = 0;
+ block[1] = space_dim2;
+ count[1] = 1;
+ stride[1]= 1;
+ start[1] = 0;
break;
default:
- /* Unknown mode. Set it to cover the whole dataset. */
- block[0] = space_dim1*mpi_size;
- block[1] = space_dim2;
- stride[0] = block[0];
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = 0;
- start[1] = 0;
-
- break;
+ /* Unknown mode. Set it to cover the whole dataset. */
+ block[0] = space_dim1*mpi_size;
+ block[1] = space_dim2;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = 0;
+
+ break;
}
if (VERBOSE_MED){
- printf("start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
- (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
- (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
- (unsigned long)(block[0]*block[1]*count[0]*count[1]));
+ HDprintf("start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
+ (unsigned long)(block[0]*block[1]*count[0]*count[1]));
}
}
@@ -336,10 +336,10 @@ ccslab_set(int mpi_rank,
*/
static void
ccdataset_fill(hsize_t start[],
- hsize_t stride[],
- hsize_t count[],
- hsize_t block[],
- DATATYPE * dataset,
+ hsize_t stride[],
+ hsize_t count[],
+ hsize_t block[],
+ DATATYPE * dataset,
int mem_selection)
{
DATATYPE *dataptr = dataset;
@@ -377,28 +377,28 @@ ccdataset_fill(hsize_t start[],
*/
static void
ccdataset_print(hsize_t start[],
- hsize_t block[],
- DATATYPE * dataset)
+ hsize_t block[],
+ DATATYPE * dataset)
{
DATATYPE *dataptr = dataset;
hsize_t i, j;
/* print the column heading */
- printf("Print only the first block of the dataset\n");
- printf("%-8s", "Cols:");
+ HDprintf("Print only the first block of the dataset\n");
+ HDprintf("%-8s", "Cols:");
for (j=0; j < block[1]; j++){
- printf("%3lu ", (unsigned long)(start[1]+j));
+ HDprintf("%3lu ", (unsigned long)(start[1]+j));
}
- printf("\n");
+ HDprintf("\n");
/* print the slab data */
for (i=0; i < block[0]; i++){
- printf("Row %2lu: ", (unsigned long)(i+start[0]));
- for (j=0; j < block[1]; j++){
- printf("%03d ", *dataptr++);
- }
- printf("\n");
+ HDprintf("Row %2lu: ", (unsigned long)(i+start[0]));
+ for (j=0; j < block[1]; j++){
+ HDprintf("%03d ", *dataptr++);
+ }
+ HDprintf("\n");
}
}
@@ -407,11 +407,11 @@ ccdataset_print(hsize_t start[],
*/
static int
ccdataset_vrfy(hsize_t start[],
- hsize_t count[],
- hsize_t stride[],
- hsize_t block[],
- DATATYPE *dataset,
- DATATYPE *original,
+ hsize_t count[],
+ hsize_t stride[],
+ hsize_t block[],
+ DATATYPE *dataset,
+ DATATYPE *original,
int mem_selection)
{
hsize_t i, j,k1,k2,k=0;
@@ -420,14 +420,14 @@ ccdataset_vrfy(hsize_t start[],
/* print it if VERBOSE_MED */
if (VERBOSE_MED) {
- printf("dataset_vrfy dumping:::\n");
- printf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
- (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
- (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
- printf("original values:\n");
- ccdataset_print(start, block, original);
- printf("compared values:\n");
- ccdataset_print(start, block, dataset);
+ HDprintf("dataset_vrfy dumping:::\n");
+ HDprintf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
+ (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
+ HDprintf("original values:\n");
+ ccdataset_print(start, block, original);
+ HDprintf("compared values:\n");
+ ccdataset_print(start, block, dataset);
}
vrfyerrs = 0;
@@ -449,7 +449,7 @@ ccdataset_vrfy(hsize_t start[],
}
if (*dataptr != *oriptr){
if (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
- printf("Dataset Verify failed at [%lu][%lu]: expect %d, got %d\n",
+ HDprintf("Dataset Verify failed at [%lu][%lu]: expect %d, got %d\n",
(unsigned long)i, (unsigned long)j,
*(oriptr), *(dataptr));
}
@@ -459,9 +459,9 @@ ccdataset_vrfy(hsize_t start[],
}
}
if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
- printf("[more errors ...]\n");
+ HDprintf("[more errors ...]\n");
if (vrfyerrs)
- printf("%d errors found in ccdataset_vrfy\n", vrfyerrs);
+ HDprintf("%d errors found in ccdataset_vrfy\n", vrfyerrs);
return(vrfyerrs);
}
@@ -478,28 +478,28 @@ static void
dataset_big_write(void)
{
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
hid_t dataset;
- hid_t datatype; /* Datatype ID */
- hsize_t dims[RANK]; /* dataset dim sizes */
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hid_t datatype; /* Datatype ID */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
hsize_t *coords = NULL;
int i;
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
+ hid_t acc_tpl; /* File access templates */
hsize_t h;
size_t num_points;
B_DATATYPE * wdata;
/* allocate memory for data buffer */
- wdata = (B_DATATYPE *)malloc(bigcount*sizeof(B_DATATYPE));
+ wdata = (B_DATATYPE *)HDmalloc(bigcount*sizeof(B_DATATYPE));
VRFY((wdata != NULL), "wdata malloc succeeded");
/* setup file access template */
@@ -552,8 +552,8 @@ dataset_big_write(void)
fill_datasets(start, block, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, wdata);
+ MESG("data_array created");
+ dataset_print(start, block, wdata);
}
/* set up the collective transfer properties list */
@@ -580,7 +580,7 @@ dataset_big_write(void)
/* Each process takes a slabs of cols. */
- if (mpi_rank == 0)
+ if (mpi_rank == 0)
HDprintf("\nTesting Dataset2 write by COL\n");
/* Create a large dataset */
dims[0] = bigcount;
@@ -615,8 +615,8 @@ dataset_big_write(void)
fill_datasets(start, block, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, wdata);
+ MESG("data_array created");
+ dataset_print(start, block, wdata);
}
/* set up the collective transfer properties list */
@@ -690,7 +690,7 @@ dataset_big_write(void)
fill_datasets(start, dims, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
+ MESG("data_array created");
}
ret = H5Dwrite(dataset, H5T_NATIVE_LLONG, mem_dataspace, file_dataspace,
@@ -729,7 +729,7 @@ dataset_big_write(void)
num_points = bigcount;
- coords = (hsize_t *)malloc(num_points * RANK * sizeof(hsize_t));
+ coords = (hsize_t *)HDmalloc(num_points * RANK * sizeof(hsize_t));
VRFY((coords != NULL), "coords malloc succeeded");
set_coords (start, count, stride, block, num_points, coords, IN_ORDER);
@@ -744,8 +744,8 @@ dataset_big_write(void)
fill_datasets(start, block, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, wdata);
+ MESG("data_array created");
+ dataset_print(start, block, wdata);
}
/* create a memory dataspace */
@@ -778,7 +778,7 @@ dataset_big_write(void)
ret = H5Dclose(dataset);
VRFY((ret >= 0), "H5Dclose1 succeeded");
- free(wdata);
+ HDfree(wdata);
H5Fclose(fid);
}
@@ -795,30 +795,30 @@ static void
dataset_big_read(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
hid_t dataset;
- B_DATATYPE *rdata = NULL; /* data buffer */
- B_DATATYPE *wdata = NULL; /* expected data buffer */
- hsize_t dims[RANK]; /* dataset dim sizes */
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ B_DATATYPE *rdata = NULL; /* data buffer */
+ B_DATATYPE *wdata = NULL; /* expected data buffer */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
int i,j,k;
hsize_t h;
size_t num_points;
hsize_t *coords = NULL;
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
/* allocate memory for data buffer */
- rdata = (B_DATATYPE *)malloc(bigcount*sizeof(B_DATATYPE));
+ rdata = (B_DATATYPE *)HDmalloc(bigcount*sizeof(B_DATATYPE));
VRFY((rdata != NULL), "rdata malloc succeeded");
- wdata = (B_DATATYPE *)malloc(bigcount*sizeof(B_DATATYPE));
+ wdata = (B_DATATYPE *)HDmalloc(bigcount*sizeof(B_DATATYPE));
VRFY((wdata != NULL), "wdata malloc succeeded");
- memset(rdata, 0, bigcount*sizeof(B_DATATYPE));
+ HDmemset(rdata, 0, bigcount*sizeof(B_DATATYPE));
/* setup file access template */
acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
@@ -865,7 +865,7 @@ dataset_big_read(void)
fill_datasets(start, block, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
+ MESG("data_array created");
}
/* set up the collective transfer properties list */
@@ -885,7 +885,7 @@ dataset_big_read(void)
/* verify the read data with original expected data */
ret = verify_data(start, count, stride, block, rdata, wdata);
- if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+ if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
/* release all temporary handles. */
H5Sclose(file_dataspace);
@@ -897,7 +897,7 @@ dataset_big_read(void)
if (mpi_rank == 0)
HDprintf("\nRead Testing Dataset2 by ROW\n");
- memset(rdata, 0, bigcount*sizeof(B_DATATYPE));
+ HDmemset(rdata, 0, bigcount*sizeof(B_DATATYPE));
dataset = H5Dopen2(fid, DATASET2, H5P_DEFAULT);
VRFY((dataset >= 0), "H5Dopen2 succeeded");
@@ -927,7 +927,7 @@ dataset_big_read(void)
fill_datasets(start, block, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
+ MESG("data_array created");
}
/* set up the collective transfer properties list */
@@ -947,7 +947,7 @@ dataset_big_read(void)
/* verify the read data with original expected data */
ret = verify_data(start, count, stride, block, rdata, wdata);
- if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+ if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
/* release all temporary handles. */
H5Sclose(file_dataspace);
@@ -958,7 +958,7 @@ dataset_big_read(void)
if (mpi_rank == 0)
HDprintf("\nRead Testing Dataset3 read select ALL proc 0, NONE others\n");
- memset(rdata, 0, bigcount*sizeof(B_DATATYPE));
+ HDmemset(rdata, 0, bigcount*sizeof(B_DATATYPE));
dataset = H5Dopen2(fid, DATASET3, H5P_DEFAULT);
VRFY((dataset >= 0), "H5Dopen2 succeeded");
@@ -989,7 +989,7 @@ dataset_big_read(void)
fill_datasets(start, dims, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
+ MESG("data_array created");
}
/* set up the collective transfer properties list */
@@ -1010,7 +1010,7 @@ dataset_big_read(void)
if(mpi_rank == 0) {
/* verify the read data with original expected data */
ret = verify_data(start, count, stride, block, rdata, wdata);
- if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+ if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
}
/* release all temporary handles. */
@@ -1040,13 +1040,13 @@ dataset_big_read(void)
fill_datasets(start, block, wdata);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, wdata);
+ MESG("data_array created");
+ dataset_print(start, block, wdata);
}
num_points = bigcount;
- coords = (hsize_t *)malloc(num_points * RANK * sizeof(hsize_t));
+ coords = (hsize_t *)HDmalloc(num_points * RANK * sizeof(hsize_t));
VRFY((coords != NULL), "coords malloc succeeded");
set_coords (start, count, stride, block, num_points, coords, IN_ORDER);
@@ -1056,7 +1056,7 @@ dataset_big_read(void)
ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
- if(coords) free(coords);
+ if(coords) HDfree(coords);
/* create a memory dataspace */
/* Warning: H5Screate_simple requires an array of hsize_t elements
@@ -1082,7 +1082,7 @@ dataset_big_read(void)
VRFY((ret >= 0), "H5Dread dataset1 succeeded");
ret = verify_data(start, count, stride, block, rdata, wdata);
- if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+ if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
/* release all temporary handles. */
H5Sclose(file_dataspace);
@@ -1091,8 +1091,8 @@ dataset_big_read(void)
ret = H5Dclose(dataset);
VRFY((ret >= 0), "H5Dclose1 succeeded");
- free(wdata);
- free(rdata);
+ HDfree(wdata);
+ HDfree(rdata);
wdata = NULL;
rdata = NULL;
@@ -1115,8 +1115,8 @@ dataset_big_read(void)
H5Fclose(fid);
/* release data buffers */
- if(rdata) free(rdata);
- if(wdata) free(wdata);
+ if(rdata) HDfree(rdata);
+ if(wdata) HDfree(wdata);
} /* dataset_large_readAll */
@@ -1129,7 +1129,7 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
{
hid_t ret_pl = -1;
herr_t ret; /* generic return value */
- int mpi_rank; /* mpi variables */
+ int mpi_rank; /* mpi variables */
/* need the rank for error checking macros */
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
@@ -1138,36 +1138,36 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
VRFY((ret_pl >= 0), "H5P_FILE_ACCESS");
if (l_facc_type == FACC_DEFAULT)
- return (ret_pl);
+ return (ret_pl);
if (l_facc_type == FACC_MPIO){
- /* set Parallel access with communicator */
- ret = H5Pset_fapl_mpio(ret_pl, comm, info);
- VRFY((ret >= 0), "");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(ret_pl, comm, info);
+ VRFY((ret >= 0), "");
ret = H5Pset_all_coll_metadata_ops(ret_pl, TRUE);
- VRFY((ret >= 0), "");
+ VRFY((ret >= 0), "");
ret = H5Pset_coll_metadata_write(ret_pl, TRUE);
- VRFY((ret >= 0), "");
- return(ret_pl);
+ VRFY((ret >= 0), "");
+ return(ret_pl);
}
if (l_facc_type == (FACC_MPIO | FACC_SPLIT)){
- hid_t mpio_pl;
-
- mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
- VRFY((mpio_pl >= 0), "");
- /* set Parallel access with communicator */
- ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
- VRFY((ret >= 0), "");
-
- /* setup file access template */
- ret_pl = H5Pcreate (H5P_FILE_ACCESS);
- VRFY((ret_pl >= 0), "");
- /* set Parallel access with communicator */
- ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
- VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
- H5Pclose(mpio_pl);
- return(ret_pl);
+ hid_t mpio_pl;
+
+ mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
+ VRFY((mpio_pl >= 0), "");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
+ VRFY((ret >= 0), "");
+
+ /* setup file access template */
+ ret_pl = H5Pcreate (H5P_FILE_ACCESS);
+ VRFY((ret_pl >= 0), "");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
+ VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
+ H5Pclose(mpio_pl);
+ return(ret_pl);
}
/* unknown file access types */
@@ -1176,17 +1176,17 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
/*-------------------------------------------------------------------------
- * Function: coll_chunk1
+ * Function: coll_chunk1
*
- * Purpose: Wrapper to test the collective chunk IO for regular JOINT
+ * Purpose: Wrapper to test the collective chunk IO for regular JOINT
selection with a single chunk
*
- * Return: Success: 0
+ * Return: Success: 0
*
- * Failure: -1
+ * Failure: -1
*
- * Programmer: Unknown
- * July 12th, 2004
+ * Programmer: Unknown
+ * July 12th, 2004
*
* Modifications:
*
@@ -1215,7 +1215,7 @@ coll_chunk1(void)
{
const char *filename = FILENAME[0];
if (mpi_rank == 0)
- printf("coll_chunk1\n");
+ HDprintf("coll_chunk1\n");
coll_chunktest(filename, 1, BYROW_CONT, API_NONE, HYPER, HYPER, OUT_OF_ORDER);
coll_chunktest(filename, 1, BYROW_CONT, API_NONE, HYPER, POINT, OUT_OF_ORDER);
@@ -1230,17 +1230,17 @@ coll_chunk1(void)
/*-------------------------------------------------------------------------
- * Function: coll_chunk2
+ * Function: coll_chunk2
*
- * Purpose: Wrapper to test the collective chunk IO for regular DISJOINT
+ * Purpose: Wrapper to test the collective chunk IO for regular DISJOINT
selection with a single chunk
*
- * Return: Success: 0
+ * Return: Success: 0
*
- * Failure: -1
+ * Failure: -1
*
- * Programmer: Unknown
- * July 12th, 2004
+ * Programmer: Unknown
+ * July 12th, 2004
*
* Modifications:
*
@@ -1269,7 +1269,7 @@ coll_chunk2(void)
{
const char *filename = FILENAME[0];
if (mpi_rank == 0)
- printf("coll_chunk2\n");
+ HDprintf("coll_chunk2\n");
coll_chunktest(filename, 1, BYROW_DISCONT, API_NONE, HYPER, HYPER, OUT_OF_ORDER);
coll_chunktest(filename, 1, BYROW_DISCONT, API_NONE, HYPER, POINT, OUT_OF_ORDER);
@@ -1284,17 +1284,17 @@ coll_chunk2(void)
/*-------------------------------------------------------------------------
- * Function: coll_chunk3
+ * Function: coll_chunk3
*
- * Purpose: Wrapper to test the collective chunk IO for regular JOINT
+ * Purpose: Wrapper to test the collective chunk IO for regular JOINT
selection with at least number of 2*mpi_size chunks
*
- * Return: Success: 0
+ * Return: Success: 0
*
- * Failure: -1
+ * Failure: -1
*
- * Programmer: Unknown
- * July 12th, 2004
+ * Programmer: Unknown
+ * July 12th, 2004
*
* Modifications:
*
@@ -1324,7 +1324,7 @@ coll_chunk3(void)
{
const char *filename = FILENAME[0];
if (mpi_rank == 0)
- printf("coll_chunk3\n");
+ HDprintf("coll_chunk3\n");
coll_chunktest(filename, mpi_size, BYROW_CONT, API_NONE, HYPER, HYPER, OUT_OF_ORDER);
coll_chunktest(filename, mpi_size, BYROW_CONT, API_NONE, HYPER, POINT, OUT_OF_ORDER);
@@ -1341,17 +1341,17 @@ coll_chunk3(void)
//-------------------------------------------------------------------------
// Borrowed/Modified (slightly) from t_coll_chunk.c
/*-------------------------------------------------------------------------
- * Function: coll_chunktest
+ * Function: coll_chunktest
*
* Purpose: The real testing routine for regular selection of collective
chunking storage
testing both write and read,
- If anything fails, it may be read or write. There is no
- separation test between read and write.
+ If anything fails, it may be read or write. There is no
+ separation test between read and write.
*
- * Return: Success: 0
+ * Return: Success: 0
*
- * Failure: -1
+ * Failure: -1
*
* Modifications:
* Remove invalid temporary property checkings for API_LINK_HARD and
@@ -1359,8 +1359,8 @@ coll_chunk3(void)
* Programmer: Jonathan Kim
* Date: 2012-10-10
*
- * Programmer: Unknown
- * July 12th, 2004
+ * Programmer: Unknown
+ * July 12th, 2004
*
* Modifications:
*
@@ -1369,14 +1369,14 @@ coll_chunk3(void)
static void
coll_chunktest(const char* filename,
- int chunk_factor,
- int select_factor,
+ int chunk_factor,
+ int select_factor,
int api_option,
int file_selection,
int mem_selection,
int mode)
{
- hid_t file, dataset, file_dataspace, mem_dataspace;
+ hid_t file, dataset, file_dataspace, mem_dataspace;
hid_t acc_plist,xfer_plist,crp_plist;
hsize_t dims[RANK], chunk_dims[RANK];
@@ -1524,41 +1524,41 @@ coll_chunktest(const char* filename,
}
switch(api_option){
- case API_LINK_HARD:
- status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_ONE_IO);
+ case API_LINK_HARD:
+ status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_ONE_IO);
VRFY((status>= 0),"collective chunk optimization succeeded");
break;
- case API_MULTI_HARD:
- status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_MULTI_IO);
- VRFY((status>= 0),"collective chunk optimization succeeded ");
+ case API_MULTI_HARD:
+ status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_MULTI_IO);
+ VRFY((status>= 0),"collective chunk optimization succeeded ");
break;
- case API_LINK_TRUE:
+ case API_LINK_TRUE:
status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,2);
- VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
+ VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
break;
- case API_LINK_FALSE:
+ case API_LINK_FALSE:
status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,6);
VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
break;
- case API_MULTI_COLL:
+ case API_MULTI_COLL:
status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,8);/* make sure it is using multi-chunk IO */
VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
- status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,50);
+ status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,50);
VRFY((status>= 0),"collective chunk optimization set chunk ratio succeeded");
break;
- case API_MULTI_IND:
+ case API_MULTI_IND:
status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,8);/* make sure it is using multi-chunk IO */
VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
- status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,100);
+ status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,100);
VRFY((status>= 0),"collective chunk optimization set chunk ratio succeeded");
break;
- default:
+ default:
;
}
@@ -1615,7 +1615,7 @@ coll_chunktest(const char* filename,
/* write data collectively */
status = H5Dwrite(dataset, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((status >= 0),"dataset write succeeded");
#ifdef H5_HAVE_INSTRUMENTED_LIBRARY
@@ -1820,22 +1820,22 @@ coll_chunktest(const char* filename,
/*****************************************************************************
*
- * Function: do_express_test()
+ * Function: do_express_test()
*
- * Purpose: Do an MPI_Allreduce to obtain the maximum value returned
- * by GetTestExpress() across all processes. Return this
- * value.
+ * Purpose: Do an MPI_Allreduce to obtain the maximum value returned
+ * by GetTestExpress() across all processes. Return this
+ * value.
*
- * Envirmoment variables can be different across different
- * processes. This function ensures that all processes agree
- * on whether to do an express test.
+ * Envirmoment variables can be different across different
+ * processes. This function ensures that all processes agree
+ * on whether to do an express test.
*
- * Return: Success: Maximum of the values returned by
- * GetTestExpress() across all processes.
+ * Return: Success: Maximum of the values returned by
+ * GetTestExpress() across all processes.
*
- * Failure: -1
+ * Failure: -1
*
- * Programmer: JRM -- 4/25/06
+ * Programmer: JRM -- 4/25/06
*
*****************************************************************************/
static int
@@ -1868,7 +1868,7 @@ do_express_test(int world_mpi_rank)
} /* do_express_test() */
-int main(int argc, char **argv)
+int main(int argc, char **argv)
{
int ExpressMode = 0;
hsize_t newsize = 1048576;
@@ -1894,12 +1894,12 @@ int main(int argc, char **argv)
* calls. By then, MPI calls may not work.
*/
if (H5dont_atexit() < 0){
- HDprintf("Failed to turn off atexit processing. Continue.\n");
+ HDprintf("Failed to turn off atexit processing. Continue.\n");
};
/* set alarm. */
ALARM_ON;
-
+
ExpressMode = do_express_test(mpi_rank);
dataset_big_write();
@@ -1923,7 +1923,7 @@ int main(int argc, char **argv)
/* turn off alarm */
ALARM_OFF;
- if (mpi_rank == 0)
+ if (mpi_rank == 0)
HDremove(FILENAME[0]);
/* close HDF5 library */
generated by cgit v0.12 at 2024-11-06 22:13:53 (GMT)