diff options
Diffstat (limited to 'testpar/t_dset.c')
| -rw-r--r-- | testpar/t_dset.c | 24 |
1 files changed, 18 insertions, 6 deletions
diff --git a/testpar/t_dset.c b/testpar/t_dset.c index 3929ff3..b3ec4b8 100644 --- a/testpar/t_dset.c +++ b/testpar/t_dset.c @@ -561,9 +561,9 @@ dataset_writeAll(void) hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */ hsize_t block[RANK]; /* for hyperslab setting */ - size_t num_points = dim1; /* for point selection */ - hsize_t coords [RANK*dim1]; /* for point selection */ - hsize_t current_dims; /* for point selection */ + size_t num_points; /* for point selection */ + hsize_t *coords = NULL; /* for point selection */ + hsize_t current_dims; /* for point selection */ int i; herr_t ret; /* Generic return value */ @@ -580,6 +580,11 @@ dataset_writeAll(void) MPI_Comm_size(MPI_COMM_WORLD,&mpi_size); MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); + /* set up the coords array selection */ + num_points = dim1; + coords = (hsize_t *)HDmalloc(dim1 * RANK * sizeof(hsize_t)); + VRFY((coords != NULL), "coords malloc succeeded"); + /* allocate memory for data buffer */ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); @@ -1058,6 +1063,7 @@ dataset_writeAll(void) H5Fclose(fid); /* release data buffers */ + if(coords) HDfree(coords); if(data_array1) HDfree(data_array1); } @@ -1088,9 +1094,9 @@ dataset_readAll(void) hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */ hsize_t block[RANK]; /* for hyperslab setting */ - size_t num_points = dim1; /* for point selection */ - hsize_t coords [RANK*dim0*dim1]; /* for point selection */ - hsize_t current_dims; /* for point selection */ + size_t num_points; /* for point selection */ + hsize_t *coords = NULL; /* for point selection */ + hsize_t current_dims; /* for point selection */ int i,j,k; herr_t ret; /* Generic return value */ @@ -1107,6 +1113,11 @@ dataset_readAll(void) MPI_Comm_size(MPI_COMM_WORLD,&mpi_size); MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); + /* set up the coords array selection */ + num_points = dim1; + coords = (hsize_t *)HDmalloc(dim0 * dim1 * RANK * sizeof(hsize_t)); + VRFY((coords != NULL), "coords malloc succeeded"); + /* allocate memory for data buffer */ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); @@ -1461,6 +1472,7 @@ dataset_readAll(void) H5Fclose(fid); /* release data buffers */ + if(coords) HDfree(coords); if(data_array1) HDfree(data_array1); if(data_origin1) HDfree(data_origin1); } |