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-rw-r--r--testpar/Makefile.in2
-rw-r--r--testpar/t_coll_chunk.c449
-rw-r--r--testpar/testphdf5.c14
-rw-r--r--testpar/testphdf5.h22
4 files changed, 484 insertions, 3 deletions
diff --git a/testpar/Makefile.in b/testpar/Makefile.in
index e4d3af4..239c969 100644
--- a/testpar/Makefile.in
+++ b/testpar/Makefile.in
@@ -43,7 +43,7 @@ MOSTLYCLEAN=MPItest.h5 Para*.h5 *.clog
DISTCLEAN=go Makefile testph5.sh
## Test source files
-TEST_PHDF5_SRC=testphdf5.c t_dset.c t_file.c t_mdset.c t_ph5basic.c
+TEST_PHDF5_SRC=testphdf5.c t_dset.c t_file.c t_mdset.c t_ph5basic.c t_coll_chunk.c
TEST_PHDF5_OBJ=$(TEST_PHDF5_SRC:.c=.lo)
TEST_SRC=t_mpi.c t_fphdf5.c $(TEST_PHDF5_SRC)
TEST_OBJ=$(TEST_SRC:.c=.lo)
diff --git a/testpar/t_coll_chunk.c b/testpar/t_coll_chunk.c
new file mode 100644
index 0000000..0ed4cdc
--- /dev/null
+++ b/testpar/t_coll_chunk.c
@@ -0,0 +1,449 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "testphdf5.h"
+
+/*#define SPACE_DIM1 256
+#define SPACE_DIM2 256
+#define BYROW_CONT 1
+#define BYROW_DISCONT 2
+#define DSET_COLLECTIVE_CHUNK_NAME "coll_chunk_name"
+*/
+
+
+void coll_chunktest(char* filename,int chunk_factor,int select_factor);
+/*-------------------------------------------------------------------------
+ * Function: coll_chunk1
+ *
+ * Purpose: Test the special case of the collective chunk io
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Unknown
+ * July 12th, 2004
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+coll_chunk1(){
+
+ char *filename;
+ filename = (char *) GetTestParameters();
+ coll_chunktest(filename,1,BYROW_CONT);
+
+}
+
+void
+coll_chunk2(){
+
+ char *filename;
+ filename = (char *) GetTestParameters();
+ coll_chunktest(filename,1,BYROW_DISCONT);
+
+}
+
+
+void
+coll_chunk3(){
+
+ char *filename;
+ filename = (char *) GetTestParameters();
+ coll_chunktest(filename,4,BYROW_CONT);
+
+}
+
+void
+coll_chunktest(char* filename,int chunk_factor,int select_factor) {
+
+
+ hid_t file,dataset, file_dataspace;
+ hid_t acc_plist,xfer_plist,crp_plist;
+ hsize_t dims[RANK], chunk_dims[RANK];
+ int i,j;
+ int* data_array1 = NULL;
+ int* data_origin1 = NULL;
+ herr_t status;
+ hssize_t start[RANK];
+ hsize_t count[RANK],stride[RANK],block[RANK];
+
+ /* char * filename;*/
+
+ int mpi_size,mpi_rank;
+
+ MPI_Comm comm = MPI_COMM_WORLD;
+ MPI_Info info = MPI_INFO_NULL;
+
+ /* filename = (char *) GetTestParameters();*/
+
+ /* set up MPI parameters */
+ MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
+ MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
+
+ /* Create the data space */
+ acc_plist = H5Pcreate(H5P_FILE_ACCESS);
+ VRFY((acc_plist >= 0),"");
+
+
+ status = H5Pset_fapl_mpio(acc_plist,comm,info);
+ VRFY((acc_plist >= 0),"MPIO creation property list succeeded");
+
+ file = H5Fcreate(filename,H5F_ACC_TRUNC,H5P_DEFAULT,acc_plist);
+ VRFY((file >= 0),"H5Fcreate succeeded");
+
+ status = H5Pclose(acc_plist);
+ VRFY((status >= 0),"");
+
+ /* setup dimensionality object */
+
+ dims[0] = SPACE_DIM1;
+ dims[1] = SPACE_DIM2;
+
+ /* each process takes a slab of rows
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = SPACE_DIM1/mpi_size;
+ count[1] = SPACE_DIM2;
+ start[0] = mpi_rank*count[0];
+ start[1] = 0;
+ block[0] = 1;
+ block[1] = 1;
+ */
+
+ /* allocate memory for data buffer */
+ data_array1 = (int *)malloc(SPACE_DIM1*SPACE_DIM2*sizeof(int));
+ VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+
+ /* set up dimensions of the slab this process accesses */
+ ccslab_set(mpi_rank, mpi_size, start, count, stride, block, select_factor);
+
+ file_dataspace = H5Screate_simple(2, dims, NULL);
+ VRFY((file_dataspace >= 0),"file dataspace created succeeded");
+
+ crp_plist = H5Pcreate(H5P_DATASET_CREATE);
+ VRFY((crp_plist >= 0),"");
+
+ /* test1: chunk size is equal to dataset size */
+ chunk_dims[0] = SPACE_DIM1/chunk_factor;
+ chunk_dims[1] = SPACE_DIM2/chunk_factor;
+ status = H5Pset_chunk(crp_plist, 2, chunk_dims);
+ VRFY((status >= 0),"chunk creation property list succeeded");
+
+ dataset = H5Dcreate(file,DSET_COLLECTIVE_CHUNK_NAME,H5T_NATIVE_INT,
+ file_dataspace,crp_plist);
+ VRFY((dataset >= 0),"dataset created succeeded");
+/* H5Sclose(file_dataspace); */
+
+ status = H5Pclose(crp_plist);
+ VRFY((status >= 0),"");
+
+ /*put some trivial data in the data array */
+ ccdataset_fill(start, stride,count,block, data_array1);
+ MESG("data_array initialized");
+
+/* file_dataspace = H5Dget_space(dataset); */
+ status=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride,
+ count, block);
+ VRFY((status >= 0),"hyperslab selection succeeded");
+
+ /* set up the collective transfer property list */
+ xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ VRFY((xfer_plist >= 0),"");
+
+ status = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
+ VRFY((status>= 0),"MPIO collective transfer property succeeded");
+
+ /* write data collectively */
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, file_dataspace,
+ xfer_plist, data_array1);
+ VRFY((status >= 0),"dataset write succeeded");
+
+ status = H5Dclose(dataset);
+ VRFY((status >= 0),"");
+
+ /* check whether using collective IO */
+ /* Should use H5Pget and H5Pinsert to handle this test. */
+
+/* status = H5Pclose(xfer_plist);
+ VRFY((status >= 0),"");
+
+*/
+ status = H5Sclose(file_dataspace);
+ VRFY((status >= 0),"");
+
+ status = H5Fclose(file);
+ VRFY((status >= 0),"");
+
+ if (data_array1) free(data_array1);
+
+ /* Using read to verify the data inside the dataset is correct */
+
+ /* allocate memory for data buffer */
+ data_array1 = (int *)malloc(SPACE_DIM1*SPACE_DIM2*sizeof(int));
+ VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+
+ /* allocate memory for data buffer */
+ data_origin1 = (int *)malloc(SPACE_DIM1*SPACE_DIM2*sizeof(int));
+ VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+
+ /* Create the data space */
+ acc_plist = H5Pcreate(H5P_FILE_ACCESS);
+ VRFY((acc_plist >= 0),"");
+
+ status = H5Pset_fapl_mpio(acc_plist,comm,info);
+ VRFY((acc_plist >= 0),"MPIO creation property list succeeded");
+
+ file = H5Fopen(filename,H5F_ACC_RDONLY,acc_plist);
+ VRFY((file >= 0),"H5Fcreate succeeded");
+
+ status = H5Pclose(acc_plist);
+ VRFY((status >= 0),"");
+
+ /* open the dataset collectively */
+ dataset = H5Dopen(file, DSET_COLLECTIVE_CHUNK_NAME);
+ VRFY((dataset >= 0), "");
+
+ /* set up dimensions of the slab this process accesses */
+ ccslab_set(mpi_rank, mpi_size, start, count, stride, block, select_factor);
+
+ /* create a file dataspace independently */
+ file_dataspace = H5Dget_space (dataset);
+ VRFY((file_dataspace >= 0), "");
+ status=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((status >= 0), "");
+
+ /* fill dataset with test data */
+ ccdataset_fill(start, stride,count,block, data_origin1);
+ /* read data collectively */
+ status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, file_dataspace,
+ xfer_plist, data_array1);
+ VRFY((status >= 0), "");
+/* printf("mpi rank %d\n",mpi_rank);
+ if(mpi_rank == 2) {
+ for (i = 0; i < SPACE_DIM1; i++) {
+ for (j = 0; j < SPACE_DIM2;j++) {
+ printf("i, j, data, %d, %d, %d \n",i,j,*(data_array1));
+ data_array1++;
+ }
+ }
+ }*/
+ /* verify the read data with original expected data */
+
+ status = ccdataset_vrfy(start, count, stride, block, data_array1, data_origin1);
+ if (status) nerrors++;
+
+
+ /* close dataset collectively */
+ status=H5Dclose(dataset);
+ VRFY((status >= 0), "");
+
+ status=H5Pclose(xfer_plist);
+ VRFY((status >= 0),"");
+
+ /* release all IDs created */
+ H5Sclose(file_dataspace);
+
+ /* close the file collectively */
+ H5Fclose(file);
+
+ /* release data buffers */
+ if (data_array1) free(data_array1);
+ if (data_origin1) free(data_origin1);
+
+}
+
+
+void
+ccslab_set(int mpi_rank, int mpi_size, hssize_t start[], hsize_t count[],
+ hsize_t stride[], hsize_t block[], int mode)
+{
+ switch (mode){
+ case BYROW_CONT:
+ /* Each process takes a slabs of rows. */
+ block[0] = 1;
+ block[1] = 1;
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = SPACE_DIM1/mpi_size;
+ count[1] = SPACE_DIM2;
+ start[0] = mpi_rank*count[0];
+ start[1] = 0;
+
+ if (VERBOSE_MED) printf("slab_set BYROW_CONT\n");
+ break;
+ case BYROW_DISCONT:
+ /* Each process takes several disjoint blocks. */
+ block[0] = 2;
+ block[1] = 2;
+ stride[0] = 3;
+ stride[1] = 6;
+ count[0] = 2;
+ count[1] = 3;
+ start[0] = SPACE_DIM1/mpi_size*mpi_rank;
+ start[1] = 0;
+if (VERBOSE_MED) printf("slab_set BYROW_DISCONT\n");
+ break;
+ default:
+ /* Unknown mode. Set it to cover the whole dataset. */
+ printf("unknown slab_set mode (%d)\n", mode);
+ block[0] = SPACE_DIM1;
+ block[1] = SPACE_DIM2;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = 0;
+if (VERBOSE_MED) printf("slab_set wholeset\n");
+ break;
+ }
+if (VERBOSE_MED){
+ printf("start[]=(%ld,%ld), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
+ (long)start[0], (long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
+ (unsigned long)(block[0]*block[1]*count[0]*count[1]));
+ }
+}
+
+
+/*
+ * Fill the dataset with trivial data for testing.
+ * Assume dimension rank is 2 and data is stored contiguous.
+ */
+void
+ccdataset_fill(hssize_t start[], hsize_t stride[], hsize_t count[],hsize_t block[], DATATYPE * dataset)
+{
+ DATATYPE *tmptr;
+ DATATYPE *dataptr = dataset;
+ DATATYPE temp;
+ int i, j,k1,k2;
+
+ /* put some trivial data in the data_array */
+
+ tmptr = dataptr;
+ /*for(i=0;i<SPACE_DIM1;i++){
+ for(j=0;j<SPACE_DIM2;j++){
+ *dataptr = 0;
+ dataptr++;
+ }
+ }*/
+
+ dataptr = tmptr;
+
+ /* assign the disjoint block (two-dimensional)data array value
+ through the pointer */
+ for (k1 = 0; k1 < count[0];k1++) {
+ for(i = 0;i < block[0];i++) {
+ for(k2 = 0; k2<count[1];k2++) {
+ for(j=0;j<block[1];j++) {
+
+ dataptr = tmptr + ((start[0]+k1*stride[0]+i)*SPACE_DIM2+
+ start[1]+k2*stride[1]+j);
+
+ /* printf("i,j,k1,k2 %lu %lu %lu %lu \n",i,j,k1,k2);
+ printf("Address of dataptr");
+ printf("= 0x%p\n",dataptr);
+ */
+ *dataptr = (DATATYPE)(k1+k2+i+j);
+ /*temp = *dataptr;
+ printf("data %03d\n",temp);
+ */
+ }
+ }
+ }
+ }
+
+}
+
+/*
+ * Print the first block of the content of the dataset.
+ */
+void
+ccdataset_print(hssize_t start[], hsize_t block[], DATATYPE * dataset)
+{
+ DATATYPE *dataptr = dataset;
+ hsize_t i, j;
+
+ /* print the column heading */
+ printf("Print only the first block of the dataset\n");
+ printf("%-8s", "Cols:");
+ for (j=0; j < block[1]; j++){
+ printf("%3ld ", (long)(start[1]+j));
+ }
+ printf("\n");
+
+ /* print the slab data */
+ for (i=0; i < block[0]; i++){
+ printf("Row %2ld: ", (long)(i+start[0]));
+ for (j=0; j < block[1]; j++){
+ printf("%03d ", *dataptr++);
+ }
+ printf("\n");
+ }
+}
+
+
+/*
+ * Print the content of the dataset.
+ */
+int ccdataset_vrfy(hssize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[], DATATYPE *dataset, DATATYPE *original)
+{
+ hsize_t i, j,k1,k2;
+ int vrfyerrs;
+ DATATYPE *dataptr,*oriptr;
+
+ /* print it if VERBOSE_MED */
+ if (VERBOSE_MED) {
+ printf("dataset_vrfy dumping:::\n");
+ printf("start(%ld, %ld), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
+ (long)start[0], (long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
+ printf("original values:\n");
+ ccdataset_print(start, block, original);
+ printf("compared values:\n");
+ ccdataset_print(start, block, dataset);
+ }
+
+ vrfyerrs = 0;
+
+ for (k1 = 0; k1 < count[0];k1++) {
+ for(i = 0;i < block[0];i++) {
+ for(k2 = 0; k2<count[1];k2++) {
+ for(j=0;j<block[1];j++) {
+
+ dataptr = dataset + ((start[0]+k1*stride[0]+i)*SPACE_DIM2+
+ start[1]+k2*stride[1]+j);
+ oriptr = original + ((start[0]+k1*stride[0]+i)*SPACE_DIM2+
+ start[1]+k2*stride[1]+j);
+
+ if (*dataptr != *oriptr){
+ if (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
+ printf("Dataset Verify failed at [%ld][%ld]: expect %d, got %d\n",
+ (long)i, (long)j,
+ *(original), *(dataset));
+ }
+ }
+ }
+ }
+ }
+ }
+ if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
+ printf("[more errors ...]\n");
+ if (vrfyerrs)
+ printf("%d errors found in dataset_vrfy\n", vrfyerrs);
+ return(vrfyerrs);
+}
diff --git a/testpar/testphdf5.c b/testpar/testphdf5.c
index 551a02a..43818ff 100644
--- a/testpar/testphdf5.c
+++ b/testpar/testphdf5.c
@@ -45,7 +45,7 @@ int doindependent=1; /* independent test */
unsigned dobig=0; /* "big" dataset tests */
/* FILENAME and filenames must have the same number of names */
-const char *FILENAME[11]={
+const char *FILENAME[14]={
"ParaEg1",
"ParaEg2",
"ParaEg3",
@@ -56,8 +56,11 @@ const char *FILENAME[11]={
"ParaIndividual",
"ParaBig",
"ParaFill",
+ "ParaCC1",
+ "ParaCC2",
+ "ParaCC3",
NULL};
-char filenames[11][PATH_MAX];
+char filenames[14][PATH_MAX];
hid_t fapl; /* file access property list */
#ifdef USE_PAUSE
@@ -465,6 +468,13 @@ int main(int argc, char **argv)
AddTest("fillvalue", dataset_fillvalue, NULL,
"dataset fill value", filenames[8]);
+
+ AddTest("coll. chunked 1", coll_chunk1,NULL,
+ "simple collective chunk io",filenames[10]);
+ AddTest("coll. chunked 2", coll_chunk2,NULL,
+ "noncontiguous collective chunk io",filenames[11]);
+ AddTest("coll. chunked 3", coll_chunk3,NULL,
+ "muliti-chunk collective chunk io",filenames[12]);
/* Display testing information */
TestInfo(argv[0]);
diff --git a/testpar/testphdf5.h b/testpar/testphdf5.h
index 8fb6b39..1345da3 100644
--- a/testpar/testphdf5.h
+++ b/testpar/testphdf5.h
@@ -12,6 +12,8 @@
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+/* $Id$ */
+
#ifndef PHDF5TEST_H
#define PHDF5TEST_H
@@ -121,6 +123,12 @@
#define FACC_MULTI 0x4 /* Multi File */
#define FACC_MPIPOSIX 0x8 /* MPIPOSIX */
+/*Constants for collective chunk definitions */
+#define SPACE_DIM1 24
+#define SPACE_DIM2 24
+#define BYROW_CONT 1
+#define BYROW_DISCONT 2
+#define DSET_COLLECTIVE_CHUNK_NAME "coll_chunk_name"
/* type definitions */
typedef struct H5Ptest_param_t /* holds extra test parameters */
{
@@ -162,6 +170,20 @@ void null_dataset(void);
void big_dataset(void);
void dataset_fillvalue(void);
+void coll_chunk1();
+void coll_chunk2();
+void coll_chunk3();
+/* some commonly used routines for collective chunk IO tests*/
+void ccslab_set(int mpi_rank,int mpi_size,hssize_t start[],hsize_t count[],
+ hsize_t stride[],hsize_t block[],int mode);
+
+void ccdataset_fill(hssize_t start[],hsize_t count[],
+ hsize_t stride[],hsize_t block[],DATATYPE*dataset);
+
+void ccdataset_print(hssize_t start[],hsize_t block[],DATATYPE*dataset);
+
+int ccdataset_vrfy(hssize_t start[], hsize_t count[], hsize_t stride[],
+ hsize_t block[], DATATYPE *dataset, DATATYPE *original);
/* commonly used prototypes */
hid_t create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type, hbool_t use_gpfs);
MPI_Offset h5_mpi_get_file_size(const char *filename, MPI_Comm comm, MPI_Info info);
generated by cgit v0.12 at 2024-11-07 06:16:06 (GMT)