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-rw-r--r--testpar/t_mdset.c372
1 files changed, 282 insertions, 90 deletions
diff --git a/testpar/t_mdset.c b/testpar/t_mdset.c
index 3ed6ef4..d6d9907 100644
--- a/testpar/t_mdset.c
+++ b/testpar/t_mdset.c
@@ -22,6 +22,8 @@
#define GROUP_DEPTH 128
enum obj_type { is_group, is_dset };
+
+int get_size(void);
void write_dataset(hid_t, hid_t, hid_t);
int read_dataset(hid_t, hid_t, hid_t);
void create_group_recursive(hid_t, hid_t, hid_t, int);
@@ -29,23 +31,68 @@ void recursive_read_group(hid_t, hid_t, hid_t, int);
void group_dataset_read(hid_t fid, int mpi_rank, int m);
void write_attribute(hid_t, int, int);
int read_attribute(hid_t, int, int);
-int check_value(DATATYPE *, DATATYPE *);
-void get_slab(hssize_t[], hsize_t[], hsize_t[], hsize_t[]);
+int check_value(DATATYPE *, DATATYPE *, int);
+void get_slab(hssize_t[], hsize_t[], hsize_t[], hsize_t[], int);
+
+
+/*
+ * The size value computed by this function is used extensively in
+ * configuring tests for the current number of processes.
+ *
+ * This function was created as part of an effort to allow the
+ * test functions in this file to run on an arbitrary number of
+ * processors.
+ * JRM - 8/11/04
+ */
+
+int get_size(void)
+{
+ int mpi_rank;
+ int mpi_size;
+ int size = SIZE;
+
+ MPI_Comm_rank (MPI_COMM_WORLD, &mpi_rank); /* needed for VRFY */
+ MPI_Comm_size (MPI_COMM_WORLD, &mpi_size);
+
+ if ( mpi_size > size ) {
+
+ if ( (mpi_size % 2) == 0 ) {
+
+ size = mpi_size;
+
+ } else {
+
+ size = mpi_size + 1;
+ }
+ }
+
+ VRFY((mpi_size <= size), "mpi_size <= size");
+ VRFY(((size % 2) == 0), "size isn't even");
+
+ return(size);
+
+} /* get_size() */
/*
* Example of using PHDF5 to create ndatasets datasets. Each process write
* a slab of array to the file.
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * JRM - 8/11/04
*/
void multiple_dset_write(void)
{
- int i, j, n, mpi_size, mpi_rank;
+ int i, j, n, mpi_size, mpi_rank, size;
hid_t iof, plist, dataset, memspace, filespace;
hid_t dcpl; /* Dataset creation property list */
hbool_t use_gpfs = FALSE; /* Use GPFS hints */
hssize_t chunk_origin [DIM];
hsize_t chunk_dims [DIM], file_dims [DIM];
hsize_t count[DIM]={1,1};
- double outme [SIZE][SIZE];
+ double * outme = NULL;
double fill=1.0; /* Fill value */
char dname [100];
herr_t ret;
@@ -57,10 +104,13 @@ void multiple_dset_write(void)
filename = pt->name;
ndatasets = pt->count;
+ size = get_size();
+
MPI_Comm_rank (MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size (MPI_COMM_WORLD, &mpi_size);
- VRFY((mpi_size <= SIZE), "mpi_size <= SIZE");
+ outme = HDmalloc((size_t)(size * size * sizeof(double)));
+ VRFY((outme != NULL), "HDmalloc succeeded for outme");
plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type, use_gpfs);
VRFY((plist>=0), "create_faccess_plist succeeded");
@@ -70,7 +120,7 @@ void multiple_dset_write(void)
VRFY((ret>=0), "H5Pclose succeeded");
/* decide the hyperslab according to process number. */
- get_slab(chunk_origin, chunk_dims, count, file_dims);
+ get_slab(chunk_origin, chunk_dims, count, file_dims, size);
memspace = H5Screate_simple (DIM, chunk_dims, NULL);
filespace = H5Screate_simple (DIM, file_dims, NULL);
@@ -90,9 +140,9 @@ void multiple_dset_write(void)
VRFY((dataset > 0), dname);
/* calculate data to write */
- for (i = 0; i < SIZE; i++)
- for (j = 0; j < SIZE; j++)
- outme [i][j] = n*1000 + mpi_rank;
+ for (i = 0; i < size; i++)
+ for (j = 0; j < size; j++)
+ outme [(i * size) + j] = n*1000 + mpi_rank;
H5Dwrite (dataset, H5T_NATIVE_DOUBLE, memspace, filespace, H5P_DEFAULT, outme);
@@ -109,27 +159,49 @@ void multiple_dset_write(void)
H5Sclose (memspace);
H5Pclose (dcpl);
H5Fclose (iof);
+
+ HDfree(outme);
}
-/*
- * Example of using PHDF5 to create, write, and read compact dataset.
+
+/* Example of using PHDF5 to create, write, and read compact dataset.
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * JRM - 8/11/04
*/
void compact_dataset(void)
{
- int i, j, mpi_size, mpi_rank, err_num=0;
+ int i, j, mpi_size, mpi_rank, size, err_num=0;
hbool_t use_gpfs = FALSE;
hid_t iof, plist, dcpl, dxpl, dataset, filespace;
- hsize_t file_dims [DIM]={SIZE,SIZE};
- double outme [SIZE][SIZE], inme[SIZE][SIZE];
+ hsize_t file_dims [DIM];
+ double * outme;
+ double * inme;
char dname[]="dataset";
herr_t ret;
char *filename;
+
+ size = get_size();
+
+ for ( i = 0; i < DIM; i++ )
+ {
+ file_dims[i] = size;
+ }
MPI_Comm_rank (MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size (MPI_COMM_WORLD, &mpi_size);
+ outme = HDmalloc((size_t)(size * size * sizeof(double)));
+ VRFY((outme != NULL), "HDmalloc succeeded for outme");
+
+ inme = HDmalloc((size_t)(size * size * sizeof(double)));
+ VRFY((outme != NULL), "HDmalloc succeeded for inme");
+
filename = (char *) GetTestParameters();
- VRFY((mpi_size <= SIZE), "mpi_size <= SIZE");
+ VRFY((mpi_size <= size), "mpi_size <= size");
plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type, use_gpfs);
iof = H5Fcreate (filename, H5F_ACC_TRUNC, H5P_DEFAULT, plist);
@@ -155,9 +227,9 @@ void compact_dataset(void)
VRFY((ret >= 0), "H5Pcreate xfer succeeded");
/* Recalculate data to write. Each process writes the same data. */
- for (i = 0; i < SIZE; i++)
- for (j = 0; j < SIZE; j++)
- outme [i][j] = (i+j)*1000;
+ for (i = 0; i < size; i++)
+ for (j = 0; j < size; j++)
+ outme[(i * size) + j] = (i+j)*1000;
ret=H5Dwrite (dataset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, dxpl, outme);
VRFY((ret >= 0), "H5Dwrite succeeded");
@@ -186,20 +258,31 @@ void compact_dataset(void)
VRFY((ret >= 0), "H5Dread succeeded");
/* Verify data value */
- for (i = 0; i < SIZE; i++)
- for (j = 0; j < SIZE; j++)
- if(inme[i][j] != outme[i][j])
+ for (i = 0; i < size; i++)
+ for (j = 0; j < size; j++)
+ if ( inme[(i * size) + j] != outme[(i * size) + j])
if(err_num++ < MAX_ERR_REPORT || VERBOSE_MED)
- printf("Dataset Verify failed at [%d][%d]: expect %f, got %f\n", i, j, outme[i][j], inme[i][j]);
+ printf("Dataset Verify failed at [%d][%d]: expect %f, got %f\n", i, j, outme[(i * size) + j], inme[(i * size) + j]);
H5Pclose(plist);
H5Pclose(dxpl);
H5Dclose(dataset);
H5Fclose(iof);
+ HDfree(inme);
+ HDfree(outme);
}
-/*
- * Example of using PHDF5 to create, write, and read dataset and attribute of Null dataspace.
+/*
+ * Example of using PHDF5 to create, write, and read dataset and attribute
+ * of Null dataspace.
+ *
+ * Changes: Removed the assert that mpi_size <= the SIZE #define.
+ * As best I can tell, this assert isn't needed here,
+ * and in any case, the SIZE #define is being removed
+ * in an update of the functions in this file to run
+ * with an arbitrary number of processes.
+ *
+ * JRM - 8/24/04
*/
void null_dataset(void)
{
@@ -213,26 +296,26 @@ void null_dataset(void)
char attr_name[]="attribute";
herr_t ret;
char *filename;
-
+
MPI_Comm_rank (MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size (MPI_COMM_WORLD, &mpi_size);
filename = (char *) GetTestParameters();
- VRFY((mpi_size <= SIZE), "mpi_size <= SIZE");
- plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type, use_gpfs);
+ plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL,
+ facc_type, use_gpfs);
iof = H5Fcreate (filename, H5F_ACC_TRUNC, H5P_DEFAULT, plist);
/* Define data space */
sid = H5Screate(H5S_NULL);
-
+
/* Check that the null dataspace actually has 0 elements */
nelem = H5Sget_simple_extent_npoints(sid);
VRFY((nelem== 0), "H5Sget_simple_extent_npoints");
/* Create a compact dataset */
dataset = H5Dcreate (iof, dname, H5T_NATIVE_UINT, sid, H5P_DEFAULT);
- VRFY((dataset >= 0), "H5Dcreate succeeded");
+ VRFY((dataset >= 0), "H5Dcreate succeeded");
/* set up the collective transfer properties list */
dxpl = H5Pcreate (H5P_DATASET_XFER);
@@ -243,11 +326,11 @@ void null_dataset(void)
/* Write "nothing" to the dataset (with type conversion) */
ret=H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, &uval);
VRFY((ret >= 0), "H5Dwrite succeeded");
-
+
/* Create an attribute for the group */
attr=H5Acreate(dataset,attr_name,H5T_NATIVE_UINT,sid,H5P_DEFAULT);
VRFY((attr>=0), "H5Acreate");
-
+
/* Write "nothing" to the attribute (with type conversion) */
ret = H5Awrite(attr, H5T_NATIVE_INT, &val);
VRFY((ret>=0), "H5Awrite");
@@ -271,21 +354,20 @@ void null_dataset(void)
dataset = H5Dopen(iof, dname);
VRFY((dataset >= 0), "H5Dcreate succeeded");
-
+
/* Try reading from the dataset (make certain our buffer is unmodified) */
ret = H5Dread(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, dxpl, &uval);
VRFY((ret>=0), "H5Dread");
VRFY((uval==2), "H5Dread");
-
+
/* Open the attribute for the dataset */
attr=H5Aopen_name(dataset,attr_name);
VRFY((attr>=0), "H5Aopen_name");
-
- /* Try reading from the attribute (make certain our buffer is unmodified) */
- ret = H5Aread(attr, H5T_NATIVE_INT, &val);
+
+ /* Try reading from the attribute (make certain our buffer is unmodified) */ ret = H5Aread(attr, H5T_NATIVE_INT, &val);
VRFY((ret>=0), "H5Aread");
VRFY((val==1), "H5Aread");
-
+
H5Pclose(plist);
H5Pclose(dxpl);
H5Aclose (attr);
@@ -297,6 +379,14 @@ void null_dataset(void)
* Actual data is _not_ written to these datasets. Dataspaces are exact
* sizes (2GB, 4GB, etc.), but the metadata for the file pushes the file over
* the boundary of interest.
+ *
+ * Changes: Removed the assert that mpi_size <= the SIZE #define.
+ * As best I can tell, this assert isn't needed here,
+ * and in any case, the SIZE #define is being removed
+ * in an update of the functions in this file to run
+ * with an arbitrary number of processes.
+ *
+ * JRM - 8/11/04
*/
void big_dataset(void)
{
@@ -319,7 +409,6 @@ void big_dataset(void)
VRFY((sizeof(MPI_Offset)>4), "sizeof(MPI_Offset)>4");
filename = (char *) GetTestParameters();
- VRFY((mpi_size <= SIZE), "mpi_size <= SIZE");
fapl = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type, use_gpfs);
VRFY((fapl >= 0), "create_faccess_plist succeeded");
@@ -419,6 +508,16 @@ void big_dataset(void)
/* Example of using PHDF5 to read a partial written dataset. The dataset does
* not have actual data written to the entire raw data area and relies on the
* default fill value of zeros to work correctly.
+ *
+ * Changes: Removed the assert that mpi_size <= the SIZE #define.
+ * As best I can tell, this assert isn't needed here,
+ * and in any case, the SIZE #define is being removed
+ * in an update of the functions in this file to run
+ * with an arbitrary number of processes.
+ *
+ * Also added code to free dynamically allocated buffers.
+ *
+ * JRM - 8/11/04
*/
void dataset_fillvalue(void)
{
@@ -446,7 +545,6 @@ void dataset_fillvalue(void)
MPI_Comm_size (MPI_COMM_WORLD, &mpi_size);
filename = (char *) GetTestParameters();
- VRFY((mpi_size <= SIZE), "mpi_size <= SIZE");
/* Set the dataset dimension to be one row more than number of processes */
/* and calculate the actual dataset size. */
@@ -591,22 +689,32 @@ void dataset_fillvalue(void)
/* Close fapl */
ret=H5Pclose (fapl);
VRFY((ret >= 0), "H5Pclose succeeded");
+
+ /* free the buffers */
+ HDfree(rdata);
+ HDfree(wdata);
}
/* Write multiple groups with a chunked dataset in each group collectively.
* These groups and datasets are for testing independent read later.
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * JRM - 8/16/04
*/
void collective_group_write(void)
{
- int mpi_rank, mpi_size;
+ int mpi_rank, mpi_size, size;
int i, j, m;
hbool_t use_gpfs = FALSE;
char gname[64], dname[32];
hid_t fid, gid, did, plist, dcpl, memspace, filespace;
- DATATYPE outme[SIZE][SIZE];
+ DATATYPE * outme = NULL;
hssize_t chunk_origin[DIM];
hsize_t chunk_dims[DIM], file_dims[DIM], count[DIM];
- const hsize_t chunk_size[2] = {SIZE/2, SIZE/2}; /* Chunk dimensions */
+ hsize_t chunk_size[2]; /* Chunk dimensions - computed shortly */
herr_t ret1, ret2;
H5Ptest_param_t *pt;
char *filename;
@@ -619,12 +727,20 @@ void collective_group_write(void)
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
+ size = get_size();
+
+ chunk_size[0] = (hsize_t)(size / 2);
+ chunk_size[1] = (hsize_t)(size / 2);
+
+ outme = HDmalloc((size_t)(size * size * sizeof(DATATYPE)));
+ VRFY((outme != NULL), "HDmalloc succeeded for outme");
+
plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type, use_gpfs);
fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, plist);
H5Pclose(plist);
/* decide the hyperslab according to process number. */
- get_slab(chunk_origin, chunk_dims, count, file_dims);
+ get_slab(chunk_origin, chunk_dims, count, file_dims, size);
/* select hyperslab in memory and file spaces. These two operations are
* identical since the datasets are the same. */
@@ -655,9 +771,9 @@ void collective_group_write(void)
did = H5Dcreate(gid, dname, H5T_NATIVE_INT, filespace, dcpl);
VRFY((did > 0), dname);
- for(i=0; i < SIZE; i++)
- for(j=0; j < SIZE; j++)
- outme[i][j] = (i+j)*1000 + mpi_rank;
+ for(i=0; i < size; i++)
+ for(j=0; j < size; j++)
+ outme[(i * size) + j] = (i+j)*1000 + mpi_rank;
H5Dwrite(did, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT,
outme);
@@ -677,6 +793,8 @@ void collective_group_write(void)
H5Sclose(filespace);
H5Sclose(memspace);
H5Fclose(fid);
+
+ HDfree(outme);
}
/* Let two sets of processes open and read different groups and chunked
@@ -715,16 +833,33 @@ void independent_group_read(void)
H5Fclose(fid);
}
-/* Open and read datasets and compare data */
+/* Open and read datasets and compare data
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * Also added code to verify the results of dynamic memory
+ * allocations, and to free dynamically allocated memeory
+ * when we are done with it.
+ *
+ * JRM - 8/16/04
+ */
void group_dataset_read(hid_t fid, int mpi_rank, int m)
{
- int ret, i, j;
+ int ret, i, j, size;
char gname[64], dname[32];
hid_t gid, did;
- DATATYPE *outdata, *indata;
+ DATATYPE *outdata = NULL;
+ DATATYPE *indata = NULL;
+
+ size = get_size();
- indata = (DATATYPE*)malloc(SIZE*SIZE*sizeof(DATATYPE));
- outdata = (DATATYPE*)malloc(SIZE*SIZE*sizeof(DATATYPE));
+ indata = (DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE)));
+ VRFY((indata != NULL), "HDmalloc succeeded for indata");
+
+ outdata = (DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE)));
+ VRFY((outdata != NULL), "HDmalloc succeeded for outdata");
/* open every group under root group. */
sprintf(gname, "group%d", m);
@@ -739,19 +874,20 @@ void group_dataset_read(hid_t fid, int mpi_rank, int m)
H5Dread(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, indata);
/* this is the original value */
- for(i=0; i<SIZE; i++)
- for(j=0; j<SIZE; j++) {
- *outdata = (i+j)*1000 + mpi_rank;
- outdata++;
+ for(i=0; i<size; i++)
+ for(j=0; j<size; j++) {
+ outdata[(i * size) + j] = (i+j)*1000 + mpi_rank;
}
- outdata -= SIZE*SIZE;
/* compare the original value(outdata) to the value in file(indata).*/
- ret = check_value(indata, outdata);
+ ret = check_value(indata, outdata, size);
VRFY((ret==0), "check the data");
H5Dclose(did);
H5Gclose(gid);
+
+ HDfree(indata);
+ HDfree(outdata);
}
/*
@@ -779,10 +915,16 @@ void group_dataset_read(hid_t fid, int mpi_rank, int m)
* * means the group has dataset(s).
* + means the group has attribute(s).
* ' means the datasets in the groups have attribute(s).
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * JRM - 8/16/04
*/
void multiple_group_write(void)
{
- int mpi_rank, mpi_size;
+ int mpi_rank, mpi_size, size;
int m;
hbool_t use_gpfs = FALSE;
char gname[64];
@@ -801,12 +943,14 @@ void multiple_group_write(void)
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
+ size = get_size();
+
plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type, use_gpfs);
fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, plist);
H5Pclose(plist);
/* decide the hyperslab according to process number. */
- get_slab(chunk_origin, chunk_dims, count, file_dims);
+ get_slab(chunk_origin, chunk_dims, count, file_dims, size);
/* select hyperslab in memory and file spaces. These two operations are
* identical since the datasets are the same. */
@@ -862,28 +1006,38 @@ void multiple_group_write(void)
/*
* In a group, creates NDATASETS datasets. Each process writes a hyperslab
* of a data array to the file.
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * JRM - 8/16/04
*/
void write_dataset(hid_t memspace, hid_t filespace, hid_t gid)
{
- int i, j, n;
+ int i, j, n, size;
int mpi_rank, mpi_size;
char dname[32];
- DATATYPE outme[SIZE][SIZE];
+ DATATYPE * outme = NULL;
hid_t did;
-
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
+ size = get_size();
+
+ outme = HDmalloc((size_t)(size * size * sizeof(double)));
+ VRFY((outme != NULL), "HDmalloc succeeded for outme");
+
for(n=0; n < NDATASET; n++) {
sprintf(dname, "dataset%d", n);
did = H5Dcreate(gid, dname, H5T_NATIVE_INT, filespace,
H5P_DEFAULT);
VRFY((did > 0), dname);
- for(i=0; i < SIZE; i++)
- for(j=0; j < SIZE; j++)
- outme[i][j] = n*1000 + mpi_rank;
+ for(i=0; i < size; i++)
+ for(j=0; j < size; j++)
+ outme[(i * size) + j] = n*1000 + mpi_rank;
H5Dwrite(did, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT,
outme);
@@ -893,6 +1047,7 @@ void write_dataset(hid_t memspace, hid_t filespace, hid_t gid)
H5Dclose(did);
}
+ HDfree(outme);
}
/*
@@ -931,10 +1086,16 @@ void create_group_recursive(hid_t memspace, hid_t filespace, hid_t gid,
/*
* This function is to verify the data from multiple group testing. It opens
* every dataset in every group and check their correctness.
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * JRM - 8/11/04
*/
void multiple_group_read(void)
{
- int mpi_rank, mpi_size, error_num;
+ int mpi_rank, mpi_size, error_num, size;
int m;
hbool_t use_gpfs = FALSE;
char gname[64];
@@ -952,12 +1113,14 @@ void multiple_group_read(void)
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
+ size = get_size();
+
plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type, use_gpfs);
fid = H5Fopen(filename, H5F_ACC_RDONLY, plist);
H5Pclose(plist);
/* decide hyperslab for each process */
- get_slab(chunk_origin, chunk_dims, count, file_dims);
+ get_slab(chunk_origin, chunk_dims, count, file_dims, size);
/* select hyperslab for memory and file space */
memspace = H5Screate_simple(DIM, file_dims, NULL);
@@ -1006,19 +1169,30 @@ void multiple_group_read(void)
/*
* This function opens all the datasets in a certain, checks the data using
* dataset_vrfy function.
+ *
+ * Changes: Updated function to use a dynamically calculated size,
+ * instead of the old SIZE #define. This should allow it
+ * to function with an arbitrary number of processors.
+ *
+ * JRM - 8/11/04
*/
int read_dataset(hid_t memspace, hid_t filespace, hid_t gid)
{
- int i, j, n, mpi_rank, mpi_size, attr_errors=0, vrfy_errors=0;
+ int i, j, n, mpi_rank, mpi_size, size, attr_errors=0, vrfy_errors=0;
char dname[32];
- DATATYPE *outdata, *indata;
+ DATATYPE *outdata = NULL, *indata = NULL;
hid_t did;
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
- indata = (DATATYPE*)malloc(SIZE*SIZE*sizeof(DATATYPE));
- outdata = (DATATYPE*)malloc(SIZE*SIZE*sizeof(DATATYPE));
+ size = get_size();
+
+ indata = (DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE)));
+ VRFY((indata != NULL), "HDmalloc succeeded for indata");
+
+ outdata = (DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE)));
+ VRFY((outdata != NULL), "HDmalloc succeeded for outdata");
for(n=0; n<NDATASET; n++) {
sprintf(dname, "dataset%d", n);
@@ -1029,15 +1203,15 @@ int read_dataset(hid_t memspace, hid_t filespace, hid_t gid)
indata);
/* this is the original value */
- for(i=0; i<SIZE; i++)
- for(j=0; j<SIZE; j++) {
+ for(i=0; i<size; i++)
+ for(j=0; j<size; j++) {
*outdata = n*1000 + mpi_rank;
outdata++;
}
- outdata -= SIZE*SIZE;
+ outdata -= size * size;
/* compare the original value(outdata) to the value in file(indata).*/
- vrfy_errors = check_value(indata, outdata);
+ vrfy_errors = check_value(indata, outdata, size);
/* check attribute.*/
if( (attr_errors = read_attribute(did, is_dset, n))>0 )
@@ -1046,8 +1220,8 @@ int read_dataset(hid_t memspace, hid_t filespace, hid_t gid)
H5Dclose(did);
}
- free(indata);
- free(outdata);
+ HDfree(indata);
+ HDfree(outdata);
return vrfy_errors;
}
@@ -1151,8 +1325,15 @@ int read_attribute(hid_t obj_id, int this_type, int num)
}
/* This functions compares the original data with the read-in data for its
- * hyperslab part only by process ID. */
-int check_value(DATATYPE *indata, DATATYPE *outdata)
+ * hyperslab part only by process ID.
+ *
+ * Changes: Modified function to use a passed in size parameter
+ * instead of the old SIZE #define. This should let us
+ * run with an arbitrary number of processes.
+ *
+ * JRM - 8/16/04
+ */
+int check_value(DATATYPE *indata, DATATYPE *outdata, int size)
{
int mpi_rank, mpi_size, err_num=0;
hsize_t i, j;
@@ -1161,11 +1342,11 @@ int check_value(DATATYPE *indata, DATATYPE *outdata)
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
-
- get_slab(chunk_origin, chunk_dims, count, NULL);
- indata += chunk_origin[0]*SIZE;
- outdata += chunk_origin[0]*SIZE;
+ get_slab(chunk_origin, chunk_dims, count, NULL, size);
+
+ indata += chunk_origin[0]*size;
+ outdata += chunk_origin[0]*size;
for(i=chunk_origin[0]; i<(chunk_origin[0]+chunk_dims[0]); i++)
for(j=chunk_origin[1]; j<(chunk_origin[1]+chunk_dims[1]); j++) {
if( *indata != *outdata )
@@ -1179,9 +1360,20 @@ int check_value(DATATYPE *indata, DATATYPE *outdata)
return err_num;
}
-/* Decide the portion of data chunk in dataset by process ID. */
-void get_slab(hssize_t chunk_origin[], hsize_t chunk_dims[], hsize_t count[],
- hsize_t file_dims[])
+/* Decide the portion of data chunk in dataset by process ID.
+ *
+ * Changes: Modified function to use a passed in size parameter
+ * instead of the old SIZE #define. This should let us
+ * run with an arbitrary number of processes.
+ *
+ * JRM - 8/11/04
+ */
+
+void get_slab(hssize_t chunk_origin[],
+ hsize_t chunk_dims[],
+ hsize_t count[],
+ hsize_t file_dims[],
+ int size)
{
int mpi_rank, mpi_size;
@@ -1189,15 +1381,15 @@ void get_slab(hssize_t chunk_origin[], hsize_t chunk_dims[], hsize_t count[],
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
if(chunk_origin != NULL) {
- chunk_origin[0] = mpi_rank * (SIZE/mpi_size);
+ chunk_origin[0] = mpi_rank * (size/mpi_size);
chunk_origin[1] = 0;
}
if(chunk_dims != NULL) {
- chunk_dims[0] = SIZE/mpi_size;
- chunk_dims[1] = SIZE;
+ chunk_dims[0] = size/mpi_size;
+ chunk_dims[1] = size;
}
if(file_dims != NULL)
- file_dims[0] = file_dims[1] = SIZE;
+ file_dims[0] = file_dims[1] = size;
if(count != NULL)
count[0] = count[1] = 1;
}