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-rw-r--r--testpar/Makefile.am2
-rw-r--r--testpar/Makefile.in19
-rw-r--r--testpar/t_fphdf5.c1034
3 files changed, 6 insertions, 1049 deletions
diff --git a/testpar/Makefile.am b/testpar/Makefile.am
index fca0d6f..18ee0a0 100644
--- a/testpar/Makefile.am
+++ b/testpar/Makefile.am
@@ -24,7 +24,7 @@ INCLUDES+=-I$(top_srcdir)/src -I$(top_srcdir)/test
# Test programs and scripts. These are our main targets.
#
-TEST_PROG_PARA=t_mpi t_posix_compliant t_fphdf5 testphdf5 t_cache
+TEST_PROG_PARA=t_mpi t_posix_compliant testphdf5 t_cache
TEST_SCRIPT_PARA=testph5.sh
check_PROGRAMS = $(TEST_PROG_PARA)
diff --git a/testpar/Makefile.in b/testpar/Makefile.in
index ea252e2..f3d0141 100644
--- a/testpar/Makefile.in
+++ b/testpar/Makefile.in
@@ -29,7 +29,7 @@
#
# hdf5 Parallel Library Test Makefile(.in)
#
-SOURCES = t_cache.c t_fphdf5.c t_mpi.c t_posix_compliant.c $(testphdf5_SOURCES)
+SOURCES = t_cache.c t_mpi.c t_posix_compliant.c $(testphdf5_SOURCES)
srcdir = @srcdir@
top_srcdir = @top_srcdir@
@@ -66,17 +66,13 @@ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/src/H5config.h
CONFIG_CLEAN_FILES = testph5.sh
am__EXEEXT_1 = t_mpi$(EXEEXT) t_posix_compliant$(EXEEXT) \
- t_fphdf5$(EXEEXT) testphdf5$(EXEEXT) t_cache$(EXEEXT)
+ testphdf5$(EXEEXT) t_cache$(EXEEXT)
t_cache_SOURCES = t_cache.c
t_cache_OBJECTS = t_cache.$(OBJEXT)
t_cache_LDADD = $(LDADD)
am__DEPENDENCIES_1 = $(top_builddir)/test/libh5test.la
am__DEPENDENCIES_2 = $(top_builddir)/src/libhdf5.la
t_cache_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2)
-t_fphdf5_SOURCES = t_fphdf5.c
-t_fphdf5_OBJECTS = t_fphdf5.$(OBJEXT)
-t_fphdf5_LDADD = $(LDADD)
-t_fphdf5_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2)
t_mpi_SOURCES = t_mpi.c
t_mpi_OBJECTS = t_mpi.$(OBJEXT)
t_mpi_LDADD = $(LDADD)
@@ -104,9 +100,8 @@ LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \
CCLD = $(CC)
LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
$(AM_LDFLAGS) $(LDFLAGS) -o $@
-SOURCES = t_cache.c t_fphdf5.c t_mpi.c t_posix_compliant.c \
- $(testphdf5_SOURCES)
-DIST_SOURCES = t_cache.c t_fphdf5.c t_mpi.c t_posix_compliant.c \
+SOURCES = t_cache.c t_mpi.c t_posix_compliant.c $(testphdf5_SOURCES)
+DIST_SOURCES = t_cache.c t_mpi.c t_posix_compliant.c \
$(testphdf5_SOURCES)
ETAGS = etags
CTAGS = ctags
@@ -359,7 +354,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog MPItest.h5 Para*.h5
# Test programs and scripts. These are our main targets.
#
-TEST_PROG_PARA = t_mpi t_posix_compliant t_fphdf5 testphdf5 t_cache
+TEST_PROG_PARA = t_mpi t_posix_compliant testphdf5 t_cache
TEST_SCRIPT_PARA = testph5.sh
check_SCRIPTS = $(TEST_SCRIPT)
testphdf5_SOURCES = testphdf5.c t_dset.c t_file.c t_mdset.c t_ph5basic.c \
@@ -431,9 +426,6 @@ clean-checkPROGRAMS:
t_cache$(EXEEXT): $(t_cache_OBJECTS) $(t_cache_DEPENDENCIES)
@rm -f t_cache$(EXEEXT)
$(LINK) $(t_cache_LDFLAGS) $(t_cache_OBJECTS) $(t_cache_LDADD) $(LIBS)
-t_fphdf5$(EXEEXT): $(t_fphdf5_OBJECTS) $(t_fphdf5_DEPENDENCIES)
- @rm -f t_fphdf5$(EXEEXT)
- $(LINK) $(t_fphdf5_LDFLAGS) $(t_fphdf5_OBJECTS) $(t_fphdf5_LDADD) $(LIBS)
t_mpi$(EXEEXT): $(t_mpi_OBJECTS) $(t_mpi_DEPENDENCIES)
@rm -f t_mpi$(EXEEXT)
$(LINK) $(t_mpi_LDFLAGS) $(t_mpi_OBJECTS) $(t_mpi_LDADD) $(LIBS)
@@ -455,7 +447,6 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/t_coll_chunk.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/t_dset.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/t_file.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/t_fphdf5.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/t_mdset.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/t_mpi.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/t_ph5basic.Po@am__quote@
diff --git a/testpar/t_fphdf5.c b/testpar/t_fphdf5.c
deleted file mode 100644
index b1e9535..0000000
--- a/testpar/t_fphdf5.c
+++ /dev/null
@@ -1,1034 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/*
- * Flexible Parallel HDF5 test: Create a file using the FPHDF5 file
- * driver. Populate it with groups and datasets to make sure that FPHDF5
- * can handle it.
- *
- * Author:
- * Bill Wendling (wendling@ncsa.uiuc.edu)
- * 20. February 2003
- */
-#include <stdarg.h>
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <unistd.h>
-
-#include "testphdf5.h"
-
-#ifdef H5_HAVE_FPHDF5
-
-/*===----------------------------------------------------------------------===
- * Local Functions
- *===----------------------------------------------------------------------===
- */
-static hid_t create_file(const char *filename);
-static hid_t create_group(hid_t loc, const char *grp_name, size_t size_hint);
-static hid_t create_dset(hid_t loc, const char *dset_name);
-static void access_dset(hid_t loc, const char *dset_name);
-static void slab_set(hsize_t start[], hsize_t count[],
- hsize_t stride[], hsize_t block[]);
-static void fill_data(void);
-static void write_data(hid_t loc, const char *dset_name,
- hsize_t start[], hsize_t count[],
- hsize_t stride[], hsize_t block[]);
-static void verify_complete_dataset(hid_t loc, const char *dset_name);
-static void verify_partial_dataset(hid_t loc, const char *dset_name,
- hsize_t start[], hsize_t count[],
- hsize_t stride[], hsize_t block[],
- int * buf, hsize_t buf_len);
-static void test_group_creation(hid_t loc);
-static void test_dataset_creation(hid_t loc);
-static void test_dataset_access(hid_t loc);
-static void test_dataset_write(hid_t loc);
-static void usage(const char *prog);
-
-/*===----------------------------------------------------------------------===
- * Filenames
- *===----------------------------------------------------------------------===
- * The names of the test files for
- */
-static const char *FILENAME[2] = { /* List of files we want to create */
- "FPHDF5Test",
- NULL
-};
-static char filenames[2][PATH_MAX]; /* "Fixed" filenames */
-
-/*===----------------------------------------------------------------------===
- * Global Variables
- *===----------------------------------------------------------------------===
- */
-#ifdef RANK
-#undef RANK
-#endif /* RANK */
-#ifdef DIM0
-#undef DIM0
-#endif /* !DIM0 */
-#ifdef DIM1
-#undef DIM1
-#endif /* !DIM1 */
-
-enum {
- SAP_RANK = 1, /* The rank acting as the SAP */
- RANK = 2,
- DIM0 = 6,
- DIM1 = 12
-};
-
-int nerrors = 0; /* Errors count */
-int verbose = 0; /* Verbose, default is no */
-
-static MPI_Comm SAP_Comm = MPI_COMM_NULL; /* COMM for FPHDF5 */
-static MPI_Comm SAP_Barrier_Comm = MPI_COMM_NULL; /* COMM used in barriers*/
-
-static hid_t fapl = -1; /* FPHDF5 file access property list */
-static int mpi_rank; /* Rank of this process */
-static int mpi_size; /* Size of the COMM passed to FPHDF5 */
-static int *orig_data = NULL; /* Data that's written to datasets */
-static int *local_orig_data = NULL; /* data that's written to datasets */
- /* by this process. */
-
-/* dimensions of file data space -- initialized in slab_set() */
-static hsize_t dims[RANK] = {0, 0};
-
-/* Hyperslab settings */
-static hsize_t start[RANK];
-static hsize_t count[RANK];
-static hsize_t stride[RANK];
-static hsize_t block[RANK];
-
-static const char *progname = "t_fphdf5";
-
-/* Dataset Name Template */
-static const char *dset_tmpl = "Dataset %d";
-static char dset_name[128];
-
-/* Group Name Template */
-static const char *grp_tmpl = "Process %d's Datasets";
-static char grp_name[128];
-
-#if 0
-/* A useful debugging function, but no need to compile it unless
- * we are going to use it. JRM - 4/13/4
- */
-/*-------------------------------------------------------------------------
- * Function: check_globals
- * Purpose: Debugging Function. Check the current values of some
- * globals, and generate a message when they change.
- * Return: void
- * Programmer: John Mainzer - 3/3/04
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static void
-check_globals(char * location_name)
-{
- static hsize_t local_dims[RANK] = {0,0};
- static hsize_t local_start[RANK] = {0,0};
- static hsize_t local_count[RANK] = {0,0};
- static hsize_t local_stride[RANK] = {0,0};
- static hsize_t local_block[RANK] = {0,0};
-
- if ( ( dims[0] != local_dims[0] ) ||
- ( dims[1] != local_dims[1] ) ||
- ( start[0] != local_start[0] ) ||
- ( start[1] != local_start[1] ) ||
- ( count[0] != local_count[0] ) ||
- ( count[1] != local_count[1] ) ||
- ( stride[0] != local_stride[0] ) ||
- ( stride[1] != local_stride[1] ) ||
- ( block[0] != local_block[0] ) ||
- ( block[1] != local_block[1] ) ) {
- printf("%d: globals have changed at %s.\n old: dims=[%d,%d], start=[%d,%d], count=[%d, %d], stride=[%d,%d], block=[%d,%d]\n new: dims=[%d,%d], start=[%d,%d], count=[%d, %d], stride=[%d,%d], block=[%d,%d]\n",
- mpi_rank,
- location_name,
- (int)(local_dims[0]), (int)(local_dims[1]),
- (int)(local_start[0]), (int)(local_start[1]),
- (int)(local_count[0]), (int)(local_count[1]),
- (int)(local_stride[0]), (int)(local_stride[1]),
- (int)(local_block[0]), (int)(local_block[1]),
- (int)(dims[0]), (int)(dims[1]),
- (int)(start[0]), (int)(start[1]),
- (int)(count[0]), (int)(count[1]),
- (int)(stride[0]), (int)(stride[1]),
- (int)(block[0]), (int)(block[1]));
- local_dims[0] = dims[0];
- local_dims[1] = dims[1];
- local_start[0] = start[0];
- local_start[1] = start[1];
- local_count[0] = count[0];
- local_count[1] = count[1];
- local_stride[0] = stride[0];
- local_stride[1] = stride[1];
- local_block[0] = block[0];
- local_block[1] = block[1];
- }
- return;
-} /* check_globals() */
-#endif
-
-
-#if 0
-/* Another useful debugging function, again no need to compile it unless
- * we are going to use it. JRM - 4/13/04
- */
-/*-------------------------------------------------------------------------
- * Function: print_globals
- * Purpose: Debugging Function. Display the current values of some
- * globals.
- * Return: void
- * Programmer: John Mainzer - 3/9/04
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static void
-print_globals(void)
-{
- printf("%d: dims=[%d,%d], start=[%d,%d], count=[%d, %d], stride=[%d,%d], block=[%d,%d]\n",
- (int)mpi_rank,
- (int)(dims[0]), (int)(dims[1]),
- (int)(start[0]), (int)(start[1]),
- (int)(count[0]), (int)(count[1]),
- (int)(stride[0]), (int)(stride[1]),
- (int)(block[0]), (int)(block[1]));
- return;
-} /* print_globals() */
-#endif
-
-/*-------------------------------------------------------------------------
- * Function: create_file
- * Purpose: Create a new file with the given filename.
- * Return: Success: Valid file ID
- * Failure: -1
- * Programmer: Bill Wendling
- * 29. October 2003
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static hid_t
-create_file(const char *filename)
-{
- hid_t fid = -1;
-
- fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
- VRFY((fid >= 0), "H5Fcreate");
- printf("%d: Created file %s\n", mpi_rank, filename);
- return fid;
-}
-
-/*-------------------------------------------------------------------------
- * Function: create_group
- * Purpose: Helper function that creates a group at the given
- * location with the given name and size_hint.
- * Return: Success: The handle to the new group
- * Failure: Aborts
- * Programmer: Bill Wendling
- * 29. October 2003
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static hid_t
-create_group(hid_t loc, const char *group_name, size_t size_hint)
-{
- hid_t group;
-
- VRFY(((group = H5Gcreate(loc, group_name, size_hint)) >= 0), "H5Gcreate");
- printf("%d: Created group \"%s\"\n", mpi_rank, group_name);
- return group;
-}
-
-/*-------------------------------------------------------------------------
- * Function: create_dset
- * Purpose: Helper function that creates a dataset at the given
- * location with the given name and dimensions
- * Return: Success: The handle to the new dataset
- * Failure: Aborts
- * Programmer: Bill Wendling
- * 29. October 2003
- * Modifications:
- * Altered function to use the global dims array, instead
- * of a locally declared and initialized version.
- * JRM - 3/3/04
- *-------------------------------------------------------------------------
- */
-static hid_t
-create_dset(hid_t loc, const char *dataset_name)
-{
- hid_t dset, sid;
-
- VRFY((dims[0] != 0), "dims array initialized.");
-
- VRFY(((sid = H5Screate_simple(RANK, dims, NULL)) >= 0), "H5Screate_simple");
- printf("%d: Created simple dataspace\n", mpi_rank);
-
- dset = H5Dcreate(loc, dataset_name, H5T_NATIVE_INT, sid, H5P_DEFAULT);
- VRFY((dset >= 0), "H5Dcreate");
- printf("%d: Created dataset \"%s\"\n", mpi_rank, dataset_name);
-
- VRFY((H5Sclose(sid) >= 0), "H5Sclose");
- return dset;
-}
-
-/*-------------------------------------------------------------------------
- * Function: access_dset
- * Purpose: Quickly check to see if we can access this dataset.
- * Return: Nothing, but aborts if an error occurs.
- * Programmer: Bill Wendling
- * 03. November 2003
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static void
-access_dset(hid_t loc, const char *dataset_name)
-{
- hid_t dataset;
-
- VRFY(((dataset = H5Dopen(loc, dataset_name)) >= 0), "H5Dopen");
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
-}
-
-/*-------------------------------------------------------------------------
- * Function: slab_set
- * Purpose: Setup the dimensions of the hyperslab.
- * Return: Nothing
- * Programmer: Bill Wendling
- * 05. November 2003
- * Modifications:
- * Modified function to initialize the dims array. Also
- * altered the initialization of block[0] so that the
- * the test program will run with mpi_size > 6.
- * JRM - 3/3/04
- *-------------------------------------------------------------------------
- */
-static void
-slab_set(hsize_t my_start[], hsize_t my_count[], hsize_t my_stride[], hsize_t my_block[])
-{
- /* initialize dims according to the number of processes: */
- dims[0] = DIM0 * mpi_size;
- dims[1] = DIM1;
-
- /* Each process takes a slab of rows. */
- my_block[0] = DIM0;
- my_block[1] = DIM1;
-
- my_stride[0] = my_block[0];
- my_stride[1] = my_block[1];
-
- my_count[0] = 1;
- my_count[1] = 1;
-
- my_start[0] = mpi_rank * my_block[0];
- my_start[1] = 0;
-}
-
-/*-------------------------------------------------------------------------
- * Function: fill_data
- * Purpose: Fill data buffer with some data.
- * Return: Nothing
- * Programmer: Bill Wendling
- * 13. November 2003
- * Modifications:
- * Complete re-write of function. The orig_data array is
- * now allocated (in main) with size equal the size of the
- * array on file, and is loaded with the data we expect to
- * find there.
- *
- * The new local_orig_data array is allocated to match the
- * size of this processes contribution to the on file data
- * set, and is loaded with this processes data.
- *
- * Note how mpi_rank, row, and column are encoded in each
- * cell of the arrays.
- * JRM - 3/8/04
- *-------------------------------------------------------------------------
- */
-static void
-fill_data(void)
-{
- int col;
- int row;
- int offset = 0;
- int local_offset = 0;
- int proc_num = -1;
-
- for ( proc_num = 0; proc_num < mpi_size; proc_num++ ) {
- for ( row = 0 ; row < DIM0; row++ ) {
- if ( proc_num == SAP_RANK ) {
- for ( col = 0; col < DIM1; col++ ) {
- /* The SAP doesn't write to file, so its section */
- /* of the matrix will be filled with zeros. */
- orig_data[offset++] = 0;
- }
- } else if ( proc_num == mpi_rank ) {
- for ( col = 0; col < DIM1; col++ ) {
- local_orig_data[local_offset++] =
- orig_data[offset++] =
- (proc_num * 1000) + (row * 100) + col;
- }
- } else {
- for ( col = 0; col < DIM1; col++ ) {
- orig_data[offset++] = (proc_num * 1000) + (row * 100) + col;
- }
- }
- }
- }
-
- VRFY((offset == (mpi_size * DIM0 * DIM1)), "offset OK");
- VRFY((local_offset == (DIM0 * DIM1)), "local_offset OK");
-
- return;
-
-} /* fill_data() */
-
-/*-------------------------------------------------------------------------
- * Function: write_data
- * Purpose: Writes data to a dataset.
- * Return: Nothing, but aborts if an error occurs.
- * Programmer: Bill Wendling
- * 29. October 2003
- * Modifications:
- * Modified to use local_orig_data, instead of initializing
- * a portion of orig_data. Also removed some orphan code.
- * JRM - 3/8/04
- *-------------------------------------------------------------------------
- */
-static void
-write_data(hid_t loc, const char *dataset_name, hsize_t my_start[], hsize_t my_count[],
- hsize_t my_stride[], hsize_t my_block[])
-{
- herr_t hrc;
- hid_t file_dataspace, mem_dataspace;
- hid_t dataset;
-
- /* See if dataset is there */
- VRFY(((dataset = H5Dopen(loc, dataset_name)) >= 0), "H5Dopen");
-
- file_dataspace = H5Dget_space(dataset);
- VRFY((file_dataspace >= 0), "H5Dget_space");
-
- hrc = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET,
- my_start, my_stride, my_count, my_block);
-#if 0
- /* some debugging code we may want to keep for a time. JRM - 4/13/04 */
- if ( hrc < 0 ) { /* dump the parameters */
- printf("%d: start=[%d,%d], count=[%d, %d], stride=[%d,%d], block=[%d,%d]\n",
- mpi_rank,
- (int)(my_start[0]), (int)(my_start[1]),
- (int)(my_count[0]), (int)(my_count[1]),
- (int)(my_stride[0]), (int)(my_stride[1]),
- (int)(my_block[0]), (int)(my_block[1]));
- }
-#endif
- VRFY((hrc >= 0), "H5Sselect_hyperslab in write_data");
-
- /* create a memory dataspace independently */
- mem_dataspace = H5Screate_simple(RANK, my_block, NULL);
- VRFY((mem_dataspace >= 0), "H5Screate_simple");
-
- hrc = H5Dwrite(dataset, H5T_NATIVE_INT, mem_dataspace,
- file_dataspace, H5P_DEFAULT, local_orig_data);
- VRFY((hrc >= 0), "H5Dwrite");
-
- VRFY((H5Sclose(mem_dataspace) >= 0), "H5Sclose");
- VRFY((H5Sclose(file_dataspace) >= 0), "H5Sclose");
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
-
-} /* write_data() */
-
-/*-------------------------------------------------------------------------
- * Function: verify_complete_dataset
- * Purpose: Verify that all the data in the dataset is correct --
- * including that written by other processes.
- * Return: Nothing
- * Programmer: John Mainzer
- * 3/8/04
- * Modifications:
- * None.
- *-------------------------------------------------------------------------
- */
-static void
-verify_complete_dataset(hid_t loc, const char *dataset_name)
-{
- hid_t dataset;
- int *data_array = NULL;
- size_t data_array_len = 0;
- unsigned col;
- unsigned row;
- int offset = 0;
- int vrfyerrs = 0;
-
- /* Open the dataset */
- VRFY(((dataset = H5Dopen(loc, dataset_name)) >= 0), "H5Dopen");
-
- /* allocate a buffer to receive the contents of the file dataset */
- VRFY((dims[0] != 0), "dims array initialized.");
- data_array_len = ((size_t)dims[0]) * ((size_t)dims[1]) * sizeof(int);
- data_array = (int *)malloc(data_array_len);
- VRFY((data_array != NULL), "data_array allocated.");
-
- /* Read the dataset */
- VRFY((H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
- H5P_DEFAULT, data_array) >= 0), "H5Dread");
-
-
- /* Verify the contents of the dataset */
- for ( row = 0; row < dims[0]; row++ ) {
- for ( col = 0; col < DIM1; col++ ) {
- if ( data_array[offset] != orig_data[offset] ) {
- if ( vrfyerrs++ < MAX_ERR_REPORT ) {
- fprintf(stdout, "%d: Dataset Verify failed at "
- "row %u, col %u: expect %d, got %d\n", mpi_rank,
- row, col, orig_data[offset], data_array[offset]);
- }
- }
- offset++;
- }
- }
- VRFY((offset == (mpi_size * DIM0 * DIM1)), "offset OK");
-
- if (vrfyerrs) {
- fprintf(stdout, "%d: %d errors found in verify_complete_dataset\n",
- mpi_rank, vrfyerrs);
- ++nerrors;
- }
-
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
-
- if ( data_array != NULL ) {
- free(data_array);
- }
-
- return;
-
-} /* verify_complete_dataset() */
-
-/*-------------------------------------------------------------------------
- * Function: verify_partial_dataset
- * Purpose: Verify that the data in the specified section of the
- * dataset matches the contents of the provided buffer.
- * Return: Nothing
- * Programmer: John Mainzer
- * 3/8/04
- * Modifications:
- * None.
- *-------------------------------------------------------------------------
- */
-static void
-verify_partial_dataset(hid_t loc, const char *dataset_name,
- hsize_t my_start[], hsize_t my_count[],
- hsize_t my_stride[], hsize_t my_block[],
- int * buf, hsize_t buf_len)
-{
- hid_t dataset, file_dataspace, mem_dataspace;
- int *data_array;
- unsigned col;
- unsigned row;
- hsize_t offset = 0;
- int vrfyerrs = 0;
-
- /* Open the dataset */
- VRFY(((dataset = H5Dopen(loc, dataset_name)) >= 0), "H5Dopen");
-
- /* Create a file dataspace */
- file_dataspace = H5Dget_space(dataset);
- VRFY((file_dataspace >= 0), "H5Dget_space");
- VRFY((H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET,
- my_start, my_stride, my_count, my_block) >= 0),
- "H5Sselect_hyperslab in verify_partial_dataset");
-
- /* Create a memory dataspace */
- mem_dataspace = H5Screate_simple(RANK, my_block, NULL);
- VRFY((mem_dataspace >= 0), "H5Screate_simple");
- VRFY(((block[0] * block[1]) == buf_len), "buf_len matches.");
-
- /* Read the dataset */
- VRFY((dims[0] != 0), "dims array initialized.");
- data_array = (int *)malloc(((size_t)block[0]) *
- ((size_t)block[1]) *
- sizeof(int));
- VRFY((H5Dread(dataset, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array) >= 0), "H5Dread");
-
- /* Verify the contents of the dataset */
- for ( row = 0; row < block[0]; row++ ) {
- for ( col = 0; col < block[1]; col++ ) {
- if ( data_array[offset] != buf[offset] ) {
- if ( vrfyerrs++ < MAX_ERR_REPORT ) {
- fprintf(stdout, "%d: Dataset Verify failed at "
- "row %u, col %u: expected %d, got %d\n", mpi_rank,
- row, col, buf[offset], data_array[offset]);
- }
- }
- offset++;
- }
- }
- VRFY((offset == buf_len), "offset OK");
-
- if (vrfyerrs) {
- fprintf(stdout, "%d: %d errors found in verify_partial_dataset\n",
- mpi_rank, vrfyerrs);
- ++nerrors;
- }
-
- VRFY((H5Sclose(mem_dataspace) >= 0), "H5Sclose");
- VRFY((H5Sclose(file_dataspace) >= 0), "H5Sclose");
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
-
- if ( data_array != NULL ) {
- free(data_array);
- }
-
- return;
-
-} /* verify_partial_dataset() */
-
-/*-------------------------------------------------------------------------
- * Function: test_group_creation
- * Purpose: Test creation of multiple groups in the file.
- * Return: Nothing
- * Programmer: Bill Wendling
- * 11. November 2003
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static void
-test_group_creation(hid_t loc)
-{
- if (mpi_rank == 0) {
- int i;
-
- for (i = 0; i < mpi_size; ++i)
- if (i != SAP_RANK) {
- hid_t group;
-
- sprintf(grp_name, grp_tmpl, i);
- group = create_group(loc, grp_name, 4);
- VRFY((H5Gclose(group) >= 0), "H5Gclose");
- }
- }
-
- SYNC(SAP_Barrier_Comm);
-
-} /* test_group_creation() */
-
-/*-------------------------------------------------------------------------
- * Function: test_dataset_creation
- * Purpose: Test simultaneous creation of multiple datasets in a
- * non-root group.
- * Return: Nothing
- * Programmer: Bill Wendling
- * 11. November 2003
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static void
-test_dataset_creation(hid_t loc)
-{
- hid_t dataset, group;
-
- sprintf(grp_name, grp_tmpl, mpi_rank);
- group = H5Gopen(loc, grp_name);
- VRFY((group >= 0), "H5Gopen");
-
- sprintf(dset_name, dset_tmpl, 0);
- dataset = create_dset(group, dset_name);
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
-
- /* Create 3x5x(mpi_size) dataset */
- sprintf(dset_name, dset_tmpl, 1);
- dataset = create_dset(group, dset_name);
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
-
- /* Create 2x4x(mpi_size) dataset */
- sprintf(dset_name, dset_tmpl, 2);
- dataset = create_dset(group, dset_name);
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
-
- /* Create 5x7x(mpi_size) dataset */
- sprintf(dset_name, dset_tmpl, 3);
- dataset = create_dset(group, dset_name);
- VRFY((H5Dclose(dataset) >= 0), "H5Dclose");
- VRFY((H5Gclose(group) >= 0), "H5Gclose");
-
- SYNC(SAP_Barrier_Comm);
-} /* test_dataset_creation() */
-
-/*-------------------------------------------------------------------------
- * Function: test_dataset_access
- * Purpose: Test that we can access the datasets in the file from all
- * processes.
- * Return: Nothing
- * Programmer: Bill Wendling
- * 11. November 2003
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static void
-test_dataset_access(hid_t loc)
-{
- int i;
-
- for (i = 0; i < mpi_size; ++i)
- if (i != SAP_RANK) {
- hid_t group;
-
- sprintf(grp_name, grp_tmpl, i);
- VRFY(((group = H5Gopen(loc, grp_name)) >= 0), "H5Gopen");
-
- sprintf(dset_name, dset_tmpl, 0);
- printf("%d: Accessing dataset \"%s/%s\"\n", mpi_rank, grp_name, dset_name);
- access_dset(group, dset_name);
-
- sprintf(dset_name, dset_tmpl, 1);
- printf("%d: Accessing dataset \"%s/%s\"\n", mpi_rank, grp_name, dset_name);
- access_dset(group, dset_name);
-
- sprintf(dset_name, dset_tmpl, 2);
- printf("%d: Accessing dataset \"%s/%s\"\n", mpi_rank, grp_name, dset_name);
- access_dset(group, dset_name);
-
- sprintf(dset_name, dset_tmpl, 3);
- printf("%d: Accessing dataset \"%s/%s\"\n", mpi_rank, grp_name, dset_name);
- access_dset(group, dset_name);
-
- VRFY((H5Gclose(group) >= 0), "H5Gclose");
- }
-
- SYNC(SAP_Barrier_Comm);
-} /* test_dataset_access() */
-
-/*-------------------------------------------------------------------------
- * Function: test_dataset_write
- * Purpose: Test that we can write to the datasets in the file from
- * all processes simultaneously.
- * Return: Nothing
- * Programmer: Bill Wendling
- * 11. November 2003
- * Modifications:
- * Replaced calls to verify_dataset() with calls to
- * verify_partial_dataset(). In the absence of a barrier,
- * we don't know that the other processes have done their
- * writes to the datasets as well. Thus we only check the
- * data we have written for now.
- *
- * Also re-formatted code in passing. JRM - 3/8/04
- *-------------------------------------------------------------------------
- */
-static void
-test_dataset_write(hid_t loc)
-{
- int i;
-
- /*===-------------------------------------------------------------------===
- * All processes write to each dataset.
- *===-------------------------------------------------------------------===
- */
- for (i = 0; i < mpi_size; ++i) {
- if (i != SAP_RANK) {
- hid_t group;
-
- sprintf(grp_name, grp_tmpl, i);
- VRFY(((group = H5Gopen(loc, grp_name)) >= 0), "H5Gopen");
-
- /* Write to this dataset */
- sprintf(dset_name, dset_tmpl, 0);
- printf("%d: Writing to \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- write_data(group, dset_name, start, count, stride, block);
- printf("%d: Verifying dataset \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- verify_partial_dataset(group, dset_name,
- start, count, stride, block,
- local_orig_data, (block[0] * block[1]));
-
- sprintf(dset_name, dset_tmpl, 1);
- printf("%d: Writing to \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- write_data(group, dset_name, start, count, stride, block);
- printf("%d: Verifying dataset \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- verify_partial_dataset(group, dset_name,
- start, count, stride, block,
- local_orig_data, (block[0] * block[1]));
-
- sprintf(dset_name, dset_tmpl, 2);
- printf("%d: Writing to \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- write_data(group, dset_name, start, count, stride, block);
- printf("%d: Verifying dataset \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- verify_partial_dataset(group, dset_name,
- start, count, stride, block,
- local_orig_data, (block[0] * block[1]));
-
- sprintf(dset_name, dset_tmpl, 3);
- printf("%d: Writing to \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- write_data(group, dset_name, start, count, stride, block);
- printf("%d: Verifying dataset \"/%s/%s\"\n",
- mpi_rank, grp_name, dset_name);
- verify_partial_dataset(group, dset_name,
- start, count, stride, block,
- local_orig_data, (block[0] * block[1]));
-
- /* Close the group */
- VRFY((H5Gclose(group) >= 0), "H5Gclose");
- }
- }
-} /* test_dataset_write() */
-
-/*-------------------------------------------------------------------------
- * Function: usage
- * Purpose: Print a usage message.
- * Return: Nothing
- * Programmer: Bill Wendling
- * 11. November 2003
- * Modifications:
- *-------------------------------------------------------------------------
- */
-static void
-usage(const char *prog)
-{
- if (mpi_rank == 0) {
- fprintf(stderr, "usage: %s [OPTIONS]\n", prog);
- fprintf(stderr, " OPTIONS\n");
- fprintf(stderr, " -h, --help Print a usage message and exit\n");
- fprintf(stderr, " -v, --verbose Verbose output [default: no]\n");
- fprintf(stderr, "\n");
- fflush(stdout);
- }
-}
-
-/*-------------------------------------------------------------------------
- * Function: main
- * Purpose: Parse the command line variables and run the test
- * program.
- * Return: Success: 0
- * Failure: >0
- * Programmer: Bill Wendling
- * 11. November 2003
- * Modifications:
- * Moved the malloc of orig_data to just after the call to
- * slab_set(), and modified the call to use the global dims
- * array instead of the DIM0 and DIM1 constants.
- * JRM - 3/3/04
- *
- * Added the allocation and deletion of local_orig_data.
- * This array is used to store the data written by this
- * process. JRM - 3/5/04
- *
- * Replaced calls to verify_dataset() with calls to
- * verify_complete_dataset(). JRM - 3/8/04
- *-------------------------------------------------------------------------
- */
-int
-main(int argc, char *argv[])
-{
- hid_t fid;
- herr_t hrc;
- int nargs;
-
- MPI_Init(&argc, &argv);
- MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
- MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
-
- H5open();
-
- for (nargs = argc; nargs > 1; --nargs)
- if (strcmp(argv[nargs - 1], "-v") == 0 ||
- strcmp(argv[nargs - 1], "--verbose") == 0 ||
- strcmp(argv[nargs - 1], "--verbos") == 0 ||
- strcmp(argv[nargs - 1], "--verbo") == 0 ||
- strcmp(argv[nargs - 1], "--verb") == 0 ||
- strcmp(argv[nargs - 1], "--ver") == 0 ||
- strcmp(argv[nargs - 1], "--ve") == 0) {
- verbose = 1;
- } else if (strcmp(argv[nargs - 1], "-h") == 0 ||
- strcmp(argv[nargs - 1], "--help") == 0 ||
- strcmp(argv[nargs - 1], "--hel") == 0 ||
- strcmp(argv[nargs - 1], "--he") == 0) {
- usage(progname);
- return 0;
- } else {
- fprintf(stderr, "Unknown option: %s\n", argv[nargs - 1]);
- usage(progname);
- return 1;
- }
-
- h5_show_hostname();
-
- if (MAINPROCESS) {
- printf("===================================\n");
- printf("FPHDF5 functionality tests\n");
- printf("===================================\n");
- }
-
- hrc = H5FPinit(MPI_COMM_WORLD, SAP_RANK, &SAP_Comm, &SAP_Barrier_Comm);
- VRFY((hrc == MPI_SUCCESS), "H5FP_init");
- printf("%d: Initialized FPHDF5\n", mpi_rank);
-
- if (mpi_rank != SAP_RANK) {
- /*
- * Setup the file access property list that's used to create the
- * file.
- */
- unsigned i;
-
- fapl = H5Pcreate(H5P_FILE_ACCESS);
- VRFY((fapl >= 0), "H5Pcreate");
- printf("%d: Created access property list\n", mpi_rank);
-
- hrc = H5Pset_fapl_fphdf5(fapl, SAP_Comm, SAP_Barrier_Comm,
- MPI_INFO_NULL, (unsigned)SAP_RANK);
- VRFY((fapl >= 0), "H5Pset_fapl_fphdf5");
- printf("%d: Set access property list\n", mpi_rank);
-
- slab_set(start, count, stride, block);
-
- VRFY((dims[0] != 0), "dims array initialized.");
- orig_data = (int *)malloc(((size_t)dims[0]) *
- ((size_t)dims[1]) *
- sizeof(int));
- VRFY((orig_data != NULL), "orig_data malloc succeeded");
-
- VRFY((block[0] != 0), "block array initialized.");
- local_orig_data = (int *)malloc(((size_t)block[0]) *
- ((size_t)block[1]) *
- sizeof(int));
- VRFY((orig_data != NULL), "local_orig_data malloc succeeded");
-
- fill_data();
-
- for (i = 0; i < sizeof(FILENAME) / sizeof(FILENAME[0]) - 1; ++i) {
- if (h5_fixname(FILENAME[i], fapl, filenames[i], sizeof(filenames[i])) == NULL) {
- fprintf(stderr, "h5_fixname failed\n");
- ++nerrors;
- break;
- }
-
- fid = create_file(filenames[i]);
-
- if (fid < 0)
- break;
-
- test_group_creation(fid);
- test_dataset_creation(fid);
- test_dataset_access(fid);
- test_dataset_write(fid);
-
- VRFY((H5Fclose(fid) >= 0), "H5Fclose");
- SYNC(SAP_Barrier_Comm);
- printf("%d: Closed file\n", mpi_rank);
-
- fid = H5Fopen(filenames[i], H5F_ACC_RDONLY, fapl);
- VRFY((fid >= 0), "H5Fopen");
- SYNC(SAP_Barrier_Comm);
-
- /*===------------------------------------------------------------===
- * Reverify that the data is still "correct"
- *===------------------------------------------------------------===
- */
- for (i = 0; i < (unsigned)mpi_size; ++i)
- if (i != SAP_RANK) {
- hid_t group;
-
- sprintf(grp_name, grp_tmpl, i);
- VRFY(((group = H5Gopen(fid, grp_name)) >= 0), "H5Gopen");
-
-
- /* Write to this dataset */
- sprintf(dset_name, dset_tmpl, 0);
- printf("%d: Reverifying dataset \"/%s/%s\"\n", mpi_rank,
- grp_name, dset_name);
- verify_complete_dataset(group, dset_name);
-
- sprintf(dset_name, dset_tmpl, 1);
- printf("%d: Reverifying dataset \"/%s/%s\"\n", mpi_rank,
- grp_name, dset_name);
- verify_complete_dataset(group, dset_name);
-
- sprintf(dset_name, dset_tmpl, 2);
- printf("%d: Reverifying dataset \"/%s/%s\"\n", mpi_rank,
- grp_name, dset_name);
- verify_complete_dataset(group, dset_name);
-
- sprintf(dset_name, dset_tmpl, 3);
- printf("%d: Reverifying dataset \"/%s/%s\"\n", mpi_rank,
- grp_name, dset_name);
- verify_complete_dataset(group, dset_name);
-
- /* Close the group */
- printf("%d: Closing group.", mpi_rank);
- VRFY((H5Gclose(group) >= 0), "H5Gclose");
- }
-
- SYNC(SAP_Barrier_Comm);
- VRFY((H5Fclose(fid) >= 0), "H5Fclose");
- }
-
- if ( orig_data != NULL ) {
- free(orig_data);
- }
- if ( local_orig_data != NULL ) {
- free(local_orig_data);
- }
-#if 1
- /* It is useful to keep the hdf file created by this test for
- * debugging purposes. However, this code should always be
- * turned on for checkin. JRM - 4/13/04
- */
- if (fapl > -1)
- h5_cleanup(FILENAME, fapl);
-#endif
- }
-
- VRFY((H5FPfinalize() >= 0), "H5FPfinalize");
- printf("%d: H5FP finalized\n", mpi_rank);
-
- if (MAINPROCESS) { /* only process 0 reports */
- fprintf(stderr, "===================================\n");
-
- if (nerrors)
- fprintf(stderr, "***FPHDF5 test detected %d errors***\n", nerrors);
- else
- fprintf(stderr, "FPHDF5 test finished with no errors\n");
-
- fprintf(stderr, "===================================\n");
- }
-
- H5close();
- MPI_Finalize();
- return nerrors;
-}
-
-#else
-
-/* Dummy program since FPHDF5 is not configured in */
-int
-main(int argc, char *argv[])
-{
- int mpi_rank;
-
- MPI_Init(&argc, &argv);
- MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
-
- if (mpi_rank == 0)
- printf("No t_fphdf5 test because FPHDF5 is not configured in\n");
-
- MPI_Finalize();
- return 0;
-}
-#endif /* H5_HAVE_FPHDF5 */