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Diffstat (limited to 'tools/h4toh5/h4toh5main.c')
| -rw-r--r-- | tools/h4toh5/h4toh5main.c | 1629 |
1 files changed, 1629 insertions, 0 deletions
diff --git a/tools/h4toh5/h4toh5main.c b/tools/h4toh5/h4toh5main.c new file mode 100644 index 0000000..e9ef567 --- /dev/null +++ b/tools/h4toh5/h4toh5main.c @@ -0,0 +1,1629 @@ +/*------------------------------------------------------------------------- + * + * Copyright (C) 2000 National Center for Supercomputing Applications. + * All rights reserved. + * + *------------------------------------------------------------------------- + */ + +/****************************************************************************** + + Description: + +1. converter + +See HDF4 to HDF5 mapping specification at +(http://hdf.ncsa.uiuc.edu/HDF5/papers/h4toh5) for the default mapping +from HDF4 object to HDF5 object. + +The whole converter includes 10 files, h4toh5util.h, h4toh5main.h, h4toh5util.c, h4toh5main.c, h4toh5sds.c, h4toh5image.c,h4toh5vdata.c,h4toh5vgroup.c,h4toh5pal.c and h4toh5anno.c. + +2. this file + +This file describes the main driver of hdf to hdf5 converter. It checks +the inputting parameters, initializes the global tables, sets up the root level +hdf5 structure and also check the special case fof vgroup loops at HDF file. + + +Author: Kent Yang(ymuqun@ncsa.uiuc.edu) + + +*****************************************************************************/ + + +#include "h4toh5main.h" + +int32 estnum_vg; +int32 estnum_vd; +int32 num_sds; +int32 num_images; +int num_objects; +int32 num_glsdsattrs; +int32 num_glgrattrs; +struct table* sds_hashtab; +struct table* gr_hashtab; +struct table* vg_hashtab; +struct table* vd_hashtab; +struct table* pal_hashtab; +struct name_table* name_hashtab; +struct name_table* dim_hashtab; + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: driver routine to handle all objects of hdf4 file. + * + * Return: FAIL if failed, SUCCEED if successful. + + Modfication: + *------------------------------------------------------------------------- + */ + + + +int main(int argc, char ** argv) { + + char *h5_filename=NULL; + char *h4_filename=NULL; + char *h5_extension; + int status = 0; + + argc--; + argv++; + + if (argc == 0) { + fprintf(stderr,"\nError: Invalid Arguments\n"); + PrintOptions_h4toh5(); + return FAIL; + } + + /* take care -h (help) option first */ + { int i; + for (i=0; i < argc; i++) + if ( HDstrcmp(argv[i],"-h") == 0 ) { + PrintOptions_h4toh5(); + return SUCCEED; + } + } + + + switch(argc) { + + case 0: + + PrintOptions_h4toh5(); + break; + + case 1: /* h4toh5 file1 */ + h4_filename = argv[0]; +#ifndef WIN32 + if (test_file(h4_filename,O_EXCL,292) != 0 ) { + /* 292 Decimal - 0444 Octal, a+r */ + printf("the current hdf4 file name is not set properly.\n"); + status = -1; + break; + } + if (test_dir(h4_filename) != 0 ) { + fprintf(stderr,"%s: Is a directory\n",h4_filename); + status = -1; + break; + } +#endif + /*0. check whether this file is an hdf file. */ + + if(!Hishdf(h4_filename)){ + printf("error: not an hdf file. \n"); + printf("the file will not be converted. \n"); + status = -1; + break; + } + h5_extension = HDstrdup("h5"); + h5_filename = BuildFilename(h4_filename,h5_extension); + if (h5_filename == NULL) { + printf("error in creating hdf5 file name.\n"); + status = -1; + break; + } +#ifndef WIN32 + if (test_file(h5_filename,O_CREAT|O_EXCL,436) != 0) { + /* 436 Decimal - 0664 Octal, ug+rw,o+r */ + printf("permission of hdf5 file is not set properly.\n"); + status = -1; + break; + } +#endif + status = h4toh5(h4_filename, h5_filename); + + if ( status == FAIL ) { + printf("error in converting %s into %s\n",h4_filename,h5_filename); + break; + } + if (h5_filename != NULL) { + HDfree(h5_filename); + } + + break; + + case 2: /* h4toh5 file_in file_out */ + + h4_filename = argv[0]; + h5_filename = argv[1]; + +#ifndef WIN32 + if (test_file(h4_filename,O_EXCL,292) != 0 ) { + /* 292 Decimal - 0444 Octal, a+r */ + printf("permission of hdf4 file is not set properly.\n"); + status = -1; + break; + } + + if (test_dir(h4_filename) != 0 ) { + fprintf(stderr,"%s: Is a directory\n",h4_filename); + status = -1; + break; + } + +#endif + /*0. check whether this file is a hdf file. */ + + if(!Hishdf(h4_filename)){ + printf("error: not an hdf file. \n"); + printf("the file will not be converted. \n"); + status = -1; + break; + } + +#ifndef WIN32 + if (test_file(h5_filename,O_CREAT|O_RDWR,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */ + printf("permission of hdf5 file is not set properly.\n"); + status = -1; + break; + } + + if (test_dir(h4_filename) != 0 ) { + fprintf(stderr,"%s: Is a directory\n",h4_filename); + status = -1; + break; + } + +#endif + status = h4toh5(h4_filename, h5_filename); + if ( status == FAIL ) { + printf("error in converting %sinto %s\n",h4_filename,h5_filename); + break; + } + break; + + default: + break; + } + + return status; + +} + +/*------------------------------------------------------------------------- + * Function: h4toh5 + * + * Purpose: This routine checks out arguments sent, makes sure that hdf4 + file is valid, makes sure filename for hdf5 file is correct, + and then call h4toh5(). + + *------------------------------------------------------------------------- + */ +int h4toh5(char*filename4, char*filename5) { + + /* define variables for hdf4. */ + int32 istat ; /* hdf4 library routine return value. */ + int32 file_id;/* file identfier of hdf file.*/ + int32 sd_id;/* sd interface identifer*/ + int32 gr_id;/* gr interface identifer*/ + int check_glo; + + /* define variables for hdf5. */ + hid_t file5_id;/* hdf5 file identifier. */ + hid_t h5_root;/* new hdf5 root group identifier.*/ + + hid_t h5_dimg;/* hdf5 dimensional scale group identifier. */ + hid_t h5_palg;/* hdf5 palette group identifier. */ + + /*1. open the current hdf4 file. */ + + file_id = Hopen(filename4, DFACC_READ, 0); + if(file_id == FAIL) { + printf("error: no such hdf4 files. \n"); + return FAIL; + } + + /* open sd interface.*/ + sd_id = SDstart(filename4,DFACC_READ); + if(sd_id == FAIL) { + printf("error: cannot start SD interface. \n"); + Hclose(file_id); + return FAIL; + } + + /* open gr interface.*/ + gr_id = GRstart(file_id); + if(gr_id == FAIL) { + printf("error in obtaining gr id. \n"); + SDend(sd_id); + Hclose(file_id); + return FAIL; + } + + /* open V interface. */ + istat = Vstart(file_id); + if(istat == FAIL) { + printf("error in starting V interface. \n"); + SDend(sd_id); + GRend(gr_id); + Hclose(file_id); + return FAIL; + } + + /* 2. obtain number of hdf4 objects(sds,image,vdata,vgroup,palette) + in this hdf4 file. */ + + if(get_numof_hdf4obj(filename4,file_id) == FAIL) { + printf("error in obtaining number of hdf4 objects.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + return FAIL; + } + + /* set up global hash tables for hdf4 objects. */ + if(set_hashtables() == FAIL){ + printf("error in setting hashtables. \n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + return FAIL; + } + + /* create hdf5 file. */ + file5_id = H5Fcreate(filename5,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT); + + if (file5_id < 0) { + fprintf(stderr, "unable to create hdf5 file \n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + free_allhashmemory(); + return FAIL; + } + + /* Initialize hdf5 group interface. */ + h5_root = H5Gopen(file5_id,"/"); + + if(h5_root < 0) { + printf("error in opening hdf5 root group. \n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + /**** build up helper groups(dimensional scale and palette) ****/ + if(set_helpgroups(h5_root,&h5_dimg,&h5_palg)==FAIL) { + printf("error setting up dimensional scale and palette groups.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + /* convert global sds attributes into global attributes under root group.*/ + check_glo = 1; + + if(sds_transattrs(sd_id, h5_root,num_glsdsattrs,check_glo)==FAIL) { + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + + /* convert global image attributes into global attributes under root group.*/ + check_glo = 1; + + if(gr_tranattrs(gr_id, h5_root,num_glgrattrs,check_glo)==FAIL) { + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + /* convert all objects in lone vgroups into corresponding hdf5 objects. */ + if(h4toh5lonevgs(file_id,sd_id,h5_root,h5_dimg,h5_palg)== FAIL) { + printf("error in translating lone vgroup into hdf5 objects.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + if(num_sds >0) H5Gclose(h5_dimg); + if(num_images >0) H5Gclose(h5_palg); + H5Gclose(h5_root); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + +/*convert all objects in group rings into corresponding hdf5 objects. */ + if(h4toh5vgrings(file_id,sd_id,h5_root,h5_dimg,h5_palg) == FAIL){ + printf("error in translating vgroup rings into hdf5 objects.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + if(num_sds >0) H5Gclose(h5_dimg); + if(num_images >0) H5Gclose(h5_palg); + H5Gclose(h5_root); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + /*convert all independent lone vdata into corresponding hdf5 datasets with + + if(h4toh5lonevds(file_id,h5_root) == FAIL){ + printf("error in translating lone independent vdata into hdf5 objects.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + if(num_sds >0) H5Gclose(h5_dimg); + if(num_images >0) H5Gclose(h5_palg); + H5Gclose(h5_root); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + /*** convert hdf file annotations into hdf5 attributes under the root.***/ + if(Annofil_h4_to_h5(file_id,h5_root) == FAIL) { + printf("error in translating file annotations into root attributes.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + if(num_sds >0) H5Gclose(h5_dimg); + if(num_images >0) H5Gclose(h5_palg); + H5Gclose(h5_root); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + /*** deal with untouched sds objects.convert them into hdf5 datasets under root group.***/ + + if(h4toh5unvisitedsds(file_id,sd_id,h5_root,h5_dimg) == FAIL) { + printf("error in converting unvisited sds objects into hdf5 file.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + if(num_sds >0) H5Gclose(h5_dimg); + if(num_images >0) H5Gclose(h5_palg); + H5Gclose(h5_root); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + /*** deal with untouched image objects. convert them into hdf5 datasets under root group. ***/ + + if(h4toh5unvisitedimages(file_id,h5_root,h5_palg) == FAIL) { + printf("error in converting unvisited image objects into hdf5 file.\n"); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + if(num_sds >0) H5Gclose(h5_dimg); + if(num_images >0) H5Gclose(h5_palg); + H5Gclose(h5_root); + H5Fclose(file5_id); + free_allhashmemory(); + return FAIL; + } + + free_allhashmemory(); + SDend(sd_id); + GRend(gr_id); + Vend(file_id); + Hclose(file_id); + if(num_sds >0) H5Gclose(h5_dimg); + if(num_images >0) H5Gclose(h5_palg); + H5Gclose(h5_root); + H5Fclose(file5_id); + return SUCCEED; +} + +/*------------------------------------------------------------------------- + * Function: get_numof_hdf4obj + * + * Purpose: get number or estimated number of hdf4 objects + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : + file_id: hdf file identifier + filename: hdf file name + Out: + Modification: + *------------------------------------------------------------------------- + */ +int get_numof_hdf4obj(char*filename,int32 file_id) { + + int32 sd_id;/* sd interface identifer*/ + int32 gr_id;/* gr interface identifer*/ + int num_lonevd;/* number of lone vdata*/ + int num_lonevg;/* number of lone vgroup.*/ + int32 istat; + + estnum_vg = 0; + estnum_vd = 0; + num_sds = 0; + num_images = 0; + num_objects = 0; + + /* obtain number of sds and number of global sds attribute. */ + + sd_id = SDstart(filename,DFACC_READ); + if(sd_id == FAIL) { + printf("error: cannot start SD interface. \n"); + return FAIL; + } + + if(SDfileinfo(sd_id,&num_sds,&num_glsdsattrs) == FAIL) { + printf("error in obtaining SDS information from the file.\n"); + return FAIL; + } + + /* obtain number of images and number of global image attributes.*/ + + gr_id = GRstart(file_id); + if(gr_id == FAIL) { + printf("error in obtaining gr id. \n"); + return FAIL; + } + + if(GRfileinfo(gr_id,&num_images,&num_glgrattrs) == FAIL) { + printf("error in obtaining GR information from the file. \n"); + return FAIL; + } + + /* obtain number of lone vgroup and lone vdata. */ + + istat = Vstart(file_id); + if (istat == FAIL) { + fprintf(stderr, "unable to start hdf4 V interface.\n"); + return FAIL; + } + + num_lonevd = VSlone(file_id,NULL,0); + if(num_lonevd == FAIL) { + printf("error in obtaining lone vdata number. \n"); + return FAIL; + } + + num_lonevg = Vlone(file_id,NULL,0); + if(num_lonevg == FAIL) { + printf("error in obtaining lone vgroup number. \n"); + return FAIL; + } + + /* intelligent guess of the total number of vgroups,total number of + independent vdata. */ + + estnum_vg = 6* num_lonevg; + estnum_vd = 4* num_lonevd; + + /* set the size of name hashtable to num_objects. */ + num_objects = estnum_vg + estnum_vd + num_sds + num_images; + + return SUCCEED; +} + + + +/*------------------------------------------------------------------------- + * Function: set_helpgroups + * + * Purpose: get number or estimated number of hdf4 objects + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : + h5root: hdf5 group identifier + h5dimgptr: h5 dimensional group pointer + h5palgptr: h5 palette group pointer + Modification: + *------------------------------------------------------------------------- + */ + +int set_helpgroups(hid_t h5root,hid_t* h5dimgptr,hid_t* h5palgptr){ + + hid_t h5_dimg=(-1);/* hdf5 dimensional scale group identifier. */ + hid_t h5_palg;/* hdf5 palette group identifier. */ + + /*1. dimensional scale group.*/ + + if(num_sds > 0) { + h5_dimg = H5Gcreate(h5root,HDF4_DIMG,0); + if (h5_dimg <0) { + printf("error in creating hdf5 dimensional scale group. \n"); + return FAIL; + } + + *h5dimgptr = h5_dimg; + } + + /*2. palette group.*/ + + if(num_images >0) { + h5_palg = H5Gcreate(h5root,HDF4_PALG,0); + if(h5_palg <0) { + printf("error in creating hdf5 palette group. \n"); + if(h5_dimg>0) H5Gclose(h5_dimg); + return FAIL; + } + + *h5palgptr = h5_palg; + } + + return SUCCEED; + +} + + +/*------------------------------------------------------------------------- + * Function: set_hashtables + * + * Purpose: set up hashtables + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : + + Out: + Modification: + *------------------------------------------------------------------------- + */ +int set_hashtables(void) { + + if(num_sds > 0) { + sds_hashtab = malloc(sizeof(struct table)*2*num_sds); + if(init_tab(2*num_sds,sds_hashtab)== FAIL){ + printf("cannot initialize sds hashing table. \n"); + return FAIL; + } + } + + if(num_images > 0) { + gr_hashtab = malloc(sizeof(struct table)*2*num_images); + if(init_tab(2*num_images,gr_hashtab) == FAIL){ + printf("cannot initialize image hashing table. \n"); + return FAIL; + } + } + + /*hashtable is made to be fixed for dimensional scale and palette.*/ + + if(num_sds > 0) { + dim_hashtab = malloc(sizeof(struct name_table)*DIM_HASHSIZE); + if(init_nametab(DIM_HASHSIZE,dim_hashtab) == FAIL) { + printf("can not initialize dimension hashing table.\n"); + return FAIL; + } + } + + /* initialize the palette table */ + if(num_images > 0){ + pal_hashtab = malloc(sizeof(struct table)*PAL_HASHSIZE); + if(init_tab(PAL_HASHSIZE,pal_hashtab) == FAIL) { + printf("can not initialize palette hashing table.\n"); + return FAIL; + } + } + + /* initialize the vgroup table */ + if(estnum_vg > 0) { + vg_hashtab = malloc(sizeof(struct table)*estnum_vg); + } + else { + estnum_vg = VG_DEFHASHSIZE; + vg_hashtab = malloc(sizeof(struct table)*estnum_vg); + } + if(init_tab(estnum_vg,vg_hashtab) == FAIL) { + printf("error in allocating memory for vgroup hashing table.\n"); + return FAIL; + } + + /* initialize the vdata table.*/ + if(estnum_vd > 0) { + vd_hashtab = malloc(sizeof(struct table)*estnum_vd); + } + else { + estnum_vd = VD_DEFHASHSIZE; + vd_hashtab = malloc(sizeof(struct table)*estnum_vd); + } + + if(init_tab(estnum_vd,vd_hashtab)== FAIL) { + printf("cannot initialize vdata hashing table.\n"); + return FAIL; + } + + /* The name hashtable is only for dealing with name clashing, + num_objects is the size of the hash table. */ + + if(num_objects != 0){ + name_hashtab = malloc(sizeof(struct name_table)*num_objects); + if(init_nametab(num_objects,name_hashtab)== FAIL) { + printf("cannot initialize name hashing table. \n"); + return FAIL; + } + } + + return SUCCEED; +} + +/*------------------------------------------------------------------------- + * Function: h4toh5lonevgs + * + * Purpose: Recursively convert hdf4 objects in lone vgroups into + corresponding hdf5 datasets + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : file_id: hdf file id + sd_id: hdf sd interface id + h5group: hdf5 group id + h5_dimg: hdf5 dimensional scale group id + h5_palg: hdf5 palette group id + + Out: + Modification: + *------------------------------------------------------------------------- + */ +int h4toh5lonevgs(int32 file_id,int32 sd_id,hid_t h5group,hid_t h5_dimg,hid_t h5_palg) { + + int32 vgroup_id; + int num_lonevg; /* number of lone vgroup.*/ + int32 *ref_array; + int32 istat; + char vgroup_name[VGNAMELENMAX]; + char* cor_vgroupname; + char vgroup_class[VGNAMELENMAX]; + char refstr[MAXREF_LENGTH]; + int check_vgroup; + int check_tabst; + int lone_vg_number; + char *h5cgroup_name; + + istat = Vstart(file_id); + if (istat == FAIL) { + fprintf(stderr, "unable to start hdf4 V interface.\n"); + return FAIL; + } + + num_lonevg = Vlone(file_id,NULL,0); + + if (num_lonevg == FAIL) { + printf("error in obtaining lone vgroup number. \n"); + return FAIL; + } + + /* obtain object reference array. */ + + /* if no lone vgroup, quit from this function. */ + if(num_lonevg == 0) + return SUCCEED; + + ref_array = (int32 *)malloc(sizeof(int32) *num_lonevg); + + if(ref_array == NULL) { + printf("error in allocating memory for ref_array.\n"); + return FAIL; + } + + num_lonevg = Vlone(file_id,ref_array,num_lonevg); + + /* walk through every lone group in the file */ + + for(lone_vg_number = 0; lone_vg_number < num_lonevg; + lone_vg_number++) { + + vgroup_id = Vattach(file_id,ref_array[lone_vg_number],"r"); + + if(vgroup_id ==FAIL) { + printf("error in attaching lone vgroup.\n"); + free(ref_array); + return FAIL; + } + + /*obtain group name and class name.*/ + h4toh5_ZeroMemory(vgroup_class,VGNAMELENMAX); + istat = Vgetclass(vgroup_id,vgroup_class); + if(istat == FAIL) { + printf("error in getting vgroup class.\n"); + free(ref_array); + Vdetach(vgroup_id); + return FAIL; + } + + h4toh5_ZeroMemory(vgroup_name,VGNAMELENMAX); + istat = Vgetname(vgroup_id,vgroup_name); + if(istat == FAIL ) { + printf("error in getting vgroup name. \n"); + Vdetach(vgroup_id); + free(ref_array); + return FAIL; + } + + /* check for CDF0.0 and RIG0.0, if yes + don't go into this group.*/ + + if(strcmp(vgroup_class,_HDF_CDF)==0) { + Vdetach(vgroup_id); + continue; + } + if(strcmp(vgroup_class,GR_NAME)==0) { + Vdetach(vgroup_id); + continue; + } + + /* converting integer number into string format. */ + if(conv_int_str(ref_array[lone_vg_number],refstr) == FAIL) { + printf("ref. is negative, error in converting\n"); + Vdetach(vgroup_id); + free(ref_array); + return FAIL; + } + + /* checking whether vgroup name contains ORI_SLASH, changing into CHA_SLASH.*/ + cor_vgroupname = correct_name(vgroup_name); + if(cor_vgroupname == NULL) { + printf("error in generating corrected vgroup name. \n"); + Vdetach(vgroup_id); + free(ref_array); + return FAIL; + } + + /* obtaining group name of the converted lone vgroup. In this call, + we will deal with cases such as name clashing and no available vgroup + name. */ + + h5cgroup_name = get_obj_aboname(cor_vgroupname,refstr,NULL,HDF4_VGROUP); + + if(h5cgroup_name == NULL) { + printf("error in getting group name.\n"); + Vdetach(vgroup_id); + free(ref_array); + free(cor_vgroupname); + return FAIL; + } + + /* free memory of corrected name. */ + free(cor_vgroupname); + + /* updating lookup table for vgroups.*/ + + check_vgroup = lookup(ref_array[lone_vg_number],estnum_vg,vg_hashtab); + + if(check_vgroup == 0) { /* adding this vgroup into the list. */ + + check_tabst = set_name(ref_array[lone_vg_number],estnum_vg, + vg_hashtab,h5cgroup_name); + if(check_tabst == FAIL) { + printf("not enough memory to be allocated for vgroup name. \n"); + Vdetach(vgroup_id); + free(h5cgroup_name); + free(ref_array); + return FAIL; + } + } + + /* this line should never fail, if failed, something is wrong with converter or hdf library. */ + + if(check_vgroup == 1){ + fprintf(stderr,"this vgroup should not be touched. \n"); + Vdetach(vgroup_id); + free(h5cgroup_name); + free(ref_array); + return FAIL; + } + + if(Vgroup_h4_to_h5(file_id,vgroup_id,sd_id,h5group,h5_dimg,h5_palg)==FAIL){ + printf("error in translating vgroup into hdf5 objects.\n"); + Vdetach(vgroup_id); + free(h5cgroup_name); + free(ref_array); + return FAIL; + } + + Vdetach(vgroup_id); + free(h5cgroup_name); + } + free(ref_array); + return SUCCEED; +} + + + +/*------------------------------------------------------------------------- + * Function: h4toh5vgrings + * + * Purpose: Recursively convert objects at special hdf4 vgroups + (vgroup rings) + into objects of corresponding hdf5 groups. The strategy here + is to arbitrily grab any vgroup in the group ring and put it + under hdf5 root. + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : file_id: hdf file id + sd_id: hdf sds id + h5group: hdf5 group id + h5_dimg: hdf5 dimensional scale group id + h5_palg: hdf5 palette group id + + Out: + Modification: + *------------------------------------------------------------------------- + */ + +int h4toh5vgrings(int32 file_id,int32 sd_id,hid_t h5group,hid_t h5_dimg,hid_t h5_palg){ + + int32 vgroup_id; + int32 ref_num; + char vgroup_name[VGNAMELENMAX]; + char* cor_vgroupname; + char vgroup_class[VGNAMELENMAX]; + char refstr[MAXREF_LENGTH]; + int check_vgroup; + int32 istat; + char *h5cgroup_name; + + ref_num = Vgetid(file_id,-1); + + while (ref_num != -1) { + + /* if we find a group that is not touched, grab it under root group.*/ + + check_vgroup = lookup(ref_num,estnum_vg,vg_hashtab); + + if (check_vgroup == 0){ + + vgroup_id = Vattach(file_id,ref_num,"r"); + if(vgroup_id ==FAIL) { + printf("error in attaching group in a group ring. \n"); + return FAIL; + } + + h4toh5_ZeroMemory(vgroup_name,VGNAMELENMAX); + istat = Vgetname(vgroup_id,vgroup_name); + if(istat ==FAIL) { + printf("error in obtaining vgroup names. \n"); + Vdetach(vgroup_id); + return FAIL; + } + + h4toh5_ZeroMemory(vgroup_class,VGNAMELENMAX); + if(Vgetclass(vgroup_id,vgroup_class) == FAIL) { + printf("error in obtaining vgroup class name. \n"); + Vdetach(vgroup_id); + return FAIL; + } + + /* do nothing for those predefined attribute.*/ + + if(vgroup_class[0] != '\0') { + + if(strcmp(vgroup_class,_HDF_ATTRIBUTE)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + + if(strcmp(vgroup_class,_HDF_VARIABLE)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + + if(strcmp(vgroup_class,_HDF_DIMENSION)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + + if(strcmp(vgroup_class,_HDF_UDIMENSION)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + + if(strcmp(vgroup_class,_HDF_CDF)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + + if(strcmp(vgroup_class,GR_NAME)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + + if(strcmp(vgroup_class,RI_NAME)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + } + + if(vgroup_name[0] != '\0') { + if(strcmp(vgroup_name,GR_NAME)==0) { + ref_num = Vgetid(file_id,ref_num); + Vdetach(vgroup_id); + continue; + } + } + + /* convert reference number into string format. */ + if(conv_int_str(ref_num,refstr) == FAIL) { + printf("ref. is negative, error in converting\n"); + Vdetach(vgroup_id); + return FAIL; + } + + /* checking whether vgroup name contains ORI_SLASH, changing into CHA_SLASH.*/ + cor_vgroupname = correct_name(vgroup_name); + if(cor_vgroupname == NULL) { + printf("error in generating corrected vgroup name. \n"); + Vdetach(vgroup_id); + return FAIL; + } + /* obtain the hdf5 group name. */ + h5cgroup_name = get_obj_aboname(cor_vgroupname,refstr,NULL,HDF4_VGROUP); + + if(h5cgroup_name == NULL) { + printf("error in getting vgroup name.\n"); + Vdetach(vgroup_id); + free(cor_vgroupname); + return FAIL; + } + + free(cor_vgroupname); + if(set_name(ref_num,estnum_vg,vg_hashtab,h5cgroup_name)==FAIL) { + printf("error in setting h5 group name.\n"); + Vdetach(vgroup_id); + free(h5cgroup_name); + return FAIL; + } + + if(Vgroup_h4_to_h5(file_id,vgroup_id,sd_id,h5group,h5_dimg,h5_palg) + ==FAIL){ + + printf("error in translating vgroup into hdf5 group\n"); + Vdetach(vgroup_id); + free(h5cgroup_name); + return FAIL; + } + + Vdetach(vgroup_id); + free(h5cgroup_name); + } + ref_num = Vgetid(file_id,ref_num); + } + return SUCCEED; + +} + + +/*------------------------------------------------------------------------- + * Function: h4toh5lonevds + * + * Purpose: convert hdf4 lone vdata into + the corresponding hdf5 datasets + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : file_id: hdf file id + h5group: hdf5 group id + + Out: + Modification: + *------------------------------------------------------------------------- + */ +int h4toh5lonevds(int32 file_id, hid_t h5group){ + + int32 vdata_id; + int32 *ref_vdata_array; + int32 vdata_tag; + int32 vdata_ref; + int32 istat; + char vdata_name[VGNAMELENMAX]; + char* cor_vdataname; + char vdata_class[VGNAMELENMAX]; + char refstr[MAXREF_LENGTH]; + int check_vdata; + int lone_vd_number; + int num_lonevd; + char *h5cvdata_name; + + num_lonevd = VSlone(file_id,NULL,0); + + if (num_lonevd == FAIL) { + printf("error in obtaining lone vgroup number. \n"); + return FAIL; + } + + if (num_lonevd > 0) { + + ref_vdata_array = (int32 *)malloc(sizeof(int32) *(num_lonevd)); + + num_lonevd = VSlone(file_id,ref_vdata_array,num_lonevd); + + if(num_lonevd == FAIL) { + printf("error in obtaining lone vdata number the second time.\n"); + free(ref_vdata_array); + } + /* walk through all lone vdatas. */ + + for(lone_vd_number = 0; lone_vd_number < num_lonevd;lone_vd_number++) + { + vdata_id = VSattach(file_id,ref_vdata_array[lone_vd_number],"r"); + + if(vdata_id == FAIL) { + printf("error in obtaining vdata id for lone vdata.\n"); + free(ref_vdata_array); + } + + /* Make sure this vdata is not an attribute of other hdf4 objects.*/ + + if(!VSisattr(vdata_id)) { + + h4toh5_ZeroMemory(vdata_class,VGNAMELENMAX); + istat = VSgetclass(vdata_id,vdata_class); + if(istat == FAIL) { + printf("error in getting vdata class name.\n"); + free(ref_vdata_array); + VSdetach(vdata_id); + return FAIL; + } + + + if(!strncmp(vdata_class,_HDF_CHK_TBL_CLASS,strlen(_HDF_CHK_TBL_CLASS))){ + + VSdetach(vdata_id); + continue; + } + + vdata_ref = VSQueryref(vdata_id); + + if(vdata_ref == FAIL) { + printf("error in getting vdata reference number.\n"); + free(ref_vdata_array); + VSdetach(vdata_id); + return FAIL; + } + + vdata_tag = VSQuerytag(vdata_id); + if(vdata_tag == FAIL){ + printf("error in getting vdata tag.\n"); + free(ref_vdata_array); + VSdetach(vdata_id); + return FAIL; + } + + + h4toh5_ZeroMemory(vdata_name,VGNAMELENMAX); + istat = VSQueryname(vdata_id,vdata_name); + + if(istat == FAIL) { + printf("error in getting vdata name. \n"); + free(ref_vdata_array); + VSdetach(vdata_id); + return FAIL; + } + + /* converting reference number into string format.*/ + if(conv_int_str(ref_vdata_array[lone_vd_number],refstr)==FAIL) { + printf("error in converting int to string.\n"); + free(ref_vdata_array); + VSdetach(vdata_id); + return FAIL; + } + /* checking whether vdata name contains ORI_SLASH, changing into CHA_SLASH.*/ + cor_vdataname = correct_name(vdata_name); + if(cor_vdataname == NULL) { + printf("error in generating corrected vgroup name. \n"); + VSdetach(vdata_id); + free(ref_vdata_array); + return FAIL; + } + /* obtaining hdf5 dataset name that is converted from hdf4 vdata.*/ + h5cvdata_name = get_obj_aboname(cor_vdataname,refstr,NULL,HDF4_VDATA); + if(h5cvdata_name == NULL) { + printf("error in getting vdata name.\n"); + free(ref_vdata_array); + VSdetach(vdata_id); + free(cor_vdataname); + return FAIL; + } + + free(cor_vdataname); + check_vdata = lookup(ref_vdata_array[lone_vd_number],estnum_vd, + vd_hashtab); + + /* check_vdata should be 1, if it is 1, either converter or hdf lib has bugs. */ + if(check_vdata == 1){ + printf("lone vdata should not be checked before.\n"); + free(h5cvdata_name); + free(ref_vdata_array); + VSdetach(vdata_id); + return FAIL; + } + + if(set_name(ref_vdata_array[lone_vd_number],estnum_vd,vd_hashtab, + h5cvdata_name)==FAIL) { + printf("error in setting lone vdata name. \n"); + free(ref_vdata_array); + free(h5cvdata_name); + VSdetach(vdata_id); + return FAIL; + } + + if(Vdata_h4_to_h5(file_id,vdata_id,h5group)== FAIL) { + printf("error in translating independent vdata into"); + printf(" hdf5 datasets.\n"); + free(h5cvdata_name); + free(ref_vdata_array); + VSdetach(vdata_id); + return FAIL; + } + free(h5cvdata_name); + } + + VSdetach(vdata_id); + } + free(ref_vdata_array); + } + return SUCCEED; +} + + +/*------------------------------------------------------------------------- + * Function: h4toh5unvisitedsds + * + * Purpose: convert unvisited sds objects into hdf5 datasets and put these + datasets under hdf5 root group + This routine will cover old hdf file that doesn't have vgroups. + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : + sd_id: hdf sds id + h5root: hdf5 root id + h5_dimg: hdf5 dimensional scale group id + + Out: + Modification: + *------------------------------------------------------------------------- + */ + + +int h4toh5unvisitedsds(int32 file_id,int32 sd_id,hid_t h5root,hid_t h5_dimg) { + + int i; + int32 sds_id;/* sd dataset identifer*/ + int32 sds_rank;/* sds dataset dimension rank.*/ + int32 sds_dimsizes[DIM_HASHSIZE];/* array that contains the size of the each dimension in sds dataset.*/ + int32 sds_dtype;/*sds dataset datatype.*/ + int32 num_sdsattrs;/* number of sds attributes. */ + char sds_name[MAX_NC_NAME];/* sds name.*/ + char* cor_sdsname; + int32 obj_ref; /* obj reference number assigned to sds and images.*/ + char refstr[MAXREF_LENGTH];/*object reference number in character string format.*/ + int check_sds;/* flag to check whether this sds is visited. 1 for visited and 0 for non-visited.*/ + char *h5csds_name;/* absolute path name of hdf5 dataset transferred from old sds.*/ + + if(sd_id == FAIL) { + printf("error: cannot start SD interface. \n"); + return FAIL; + } + + /* check all sds objects. */ + for(i=0;i<num_sds;i++){ + + sds_id = SDselect(sd_id,i); + + if (sds_id == FAIL) { + printf("error in obtaining sd id.\n"); + return FAIL; + } + + /* if this sds is dimensional scale, the converting should be ignored. dimensional scale will be converted separately. */ + if(SDiscoordvar(sds_id)) continue; + + /* obtain sds information. */ + if(SDgetinfo(sds_id,sds_name,&sds_rank,sds_dimsizes, + &sds_dtype,&num_sdsattrs)== FAIL) { + printf("error in obtaining SD info at "); + printf("the unvisited sds routine.\n"); + SDendaccess(sds_id); + return FAIL; + } + + /* obtain object reference number of the current sds dataset.*/ + obj_ref = SDidtoref(sds_id); + if(obj_ref == FAIL) { + printf("error in obtaining sds object reference at "); + printf("the unvisited sds routine.\n"); + SDendaccess(sds_id); + return FAIL; + } + + /* convert object reference number into string format. */ + if(conv_int_str(obj_ref,refstr) == FAIL) { + printf("error in converting integer into string.\n"); + SDendaccess(sds_id); + return FAIL; + } + + /* check whether the current sds is visited or not. */ + check_sds = lookup(obj_ref,2*num_sds,sds_hashtab); + + /* if not visited, we will do the convertion. */ + + if(check_sds == 0) { + /* since different hdf sds may hold the same name and it is also + legal that sds may not have a name; but for hdf5 dataset, + it must hold a name, so we will use get_obj_aboname to assure + that each new hdf5 dataset converted from + sds objects will have a disabiguous name. */ + + /* checking whether vgroup name contains ORI_SLASH, changing into CHA_SLASH.*/ + cor_sdsname = correct_name(sds_name); + if(cor_sdsname == NULL) { + printf("error in generating corrected sds name. \n"); + SDendaccess(sds_id); + return FAIL; + } + + h5csds_name = get_obj_aboname(cor_sdsname,refstr,NULL,HDF4_SDS); + if(h5csds_name == NULL) { + printf("error in obtaining sds name.\n"); + SDendaccess(sds_id); + free(cor_sdsname); + return FAIL; + } + free(cor_sdsname); + /* put this name into hashtable. */ + if(set_name(obj_ref,2*num_sds,sds_hashtab,h5csds_name)==FAIL) { + printf("error in setting object name.\n"); + SDendaccess(sds_id); + free(h5csds_name); + return FAIL; + } + + /* do the convertion from sds into hdf5 dataset.*/ + if(Sds_h4_to_h5(file_id,sds_id,h5root,h5_dimg)== FAIL){ + printf("error in translating sds into hdf5 dataset.\n"); + SDendaccess(sds_id); + free(h5csds_name); + return FAIL; + } + free(h5csds_name); + + } + SDendaccess(sds_id); + + } + return SUCCEED; +} + +/*------------------------------------------------------------------------- + * Function: h4toh5unvisitedimages + * + * Purpose: convert unvisited images into hdf5 dataset and put it + under hdf5 root group + This routine will cover old hdf file. + * + * Return: FAIL if failed, SUCCEED if successful. + * + * In : + file_id: hdf file id + h5_root: hdf5 root id + h5_palg: hdf5 palette group id + + Out: + Modification: + *------------------------------------------------------------------------- + */ + +int h4toh5unvisitedimages(int32 file_id,hid_t h5_root,hid_t h5_palg) { + + int i; + int32 istat; + int32 gr_id; + int32 ri_id;/*raster image identifer.*/ + char image_name[MAX_GR_NAME];/* image name.*/ + char* cor_imagename; + int check_image;/* flag to check whether this image is visited. 1 for visited and 0 for non-visited.*/ + int32 obj_ref; /* obj reference number assigned to sds and images.*/ + char refstr[MAXREF_LENGTH];/*object reference number in character string format.*/ + char *h5cimage_name;/* absolute path name of hdf5 dataset transferred from old image.*/ + + gr_id = GRstart(file_id); + if(gr_id == FAIL) { + printf("error in obtaining gr id. \n"); + return FAIL; + } + + /* check all images. */ + for (i=0;i<num_images;i++) { + + ri_id = GRselect(gr_id,i); + if(ri_id ==FAIL) { + printf("error in selecting gr interface.\n"); + return FAIL; + } + + /* obtain information of GR */ + istat = GRgetiminfo(ri_id, image_name, NULL, NULL, NULL, NULL, NULL); + + if(istat == FAIL) { + printf("error in getting GR images.\n"); + GRendaccess(ri_id); + return FAIL; + } + + /* obtain object reference number and convert it into string format. */ + obj_ref = GRidtoref(ri_id); + if(obj_ref == 0) { + printf("error in obtaining image reference number"); + printf(" at h4toh5unvisitedimages routine.\n"); + GRendaccess(ri_id); + return FAIL; + } + + if(conv_int_str(obj_ref,refstr)== FAIL) { + printf("error in converting object reference number"); + printf(" into string at h4toh5unvisitedimages routine.\n"); + GRendaccess(ri_id); + return FAIL; + } + + /* check whether the current image is visited or not. */ + check_image = lookup(obj_ref,2*num_images,gr_hashtab); + + if(check_image == 0) { + + /* since different hdf image may hold the same name and it is + also legal that an image may not have a name; but for hdf5 + dataset, it must hold a name, so we will use get_obj_aboname + to guarrtte that each new hdf5 dataset converted from + image objects will have a disabiguous name. */ + + /* checking whether vgroup name contains ORI_SLASH, + changing into CHA_SLASH.*/ + + cor_imagename = correct_name(image_name); + if(cor_imagename == NULL) { + printf("error in generating corrected image name. \n"); + GRendaccess(ri_id); + return FAIL; + } + h5cimage_name = get_obj_aboname(cor_imagename,refstr,NULL, + HDF4_IMAGE); + if(h5cimage_name == NULL) { + printf("error in getting image name.\n"); + GRendaccess(ri_id); + free(cor_imagename); + return FAIL; + } + free(cor_imagename); + + if(set_name(obj_ref,2*num_images,gr_hashtab,h5cimage_name)==FAIL) { + printf("error setting image name.\n"); + GRendaccess(ri_id); + free(h5cimage_name); + return FAIL; + } + + /* do the convertion from the image into hdf5 dataset.*/ + if(Image_h4_to_h5(file_id,ri_id,h5_root,h5_palg)== FAIL) { + printf("error in transferring image name into hdf5 dataset.\n"); + GRendaccess(ri_id); + free(h5cimage_name); + return FAIL; + } + free(h5cimage_name); + } + GRendaccess(ri_id); + } + return SUCCEED; +} + +/*------------------------------------------------------------------------- + * Function: free_allhashmemory() + * + * Purpose: free memory allocated for all hashtables + * + * Return: + * + * In : + + + Out: + Modification: + *------------------------------------------------------------------------- + */ + +void free_allhashmemory(){ + + if(estnum_vg != 0) freetable(estnum_vg,vg_hashtab); + if(estnum_vd != 0) freetable(estnum_vd,vd_hashtab); + + if(num_sds !=0) { + freetable(2*num_sds,sds_hashtab); + freenametable(DIM_HASHSIZE,dim_hashtab); + } + + if(num_images !=0) { + freetable(2*num_images,gr_hashtab); + freetable(PAL_HASHSIZE,pal_hashtab); + } + + if(num_objects !=0) freenametable(num_objects,name_hashtab); + +} + + + +/********The following routines are adapted from h5toh4 converter. *******/ +/***************************************************************************** + + Routine: test_file + + Description: Test a file for read/write - ability. + + Input: filename - Unix filename + + Output: function return, global variable - errno + +*****************************************************************************/ + +int test_file(char *filename,int oflag,mode_t mode) +{ + int fid; + + errno = 0; + + fid = open(filename, oflag, mode); + if (fid < 0) { + perror(filename); + } + close(fid); + + return errno; + +} + + +/***************************************************************************** + + Routine: test_dir + + Description: Test pathway to determine if it is a directory + + Input: path - pathname given + + Output: function return TRUE/FALSE + +*****************************************************************************/ + +int test_dir(char *path) +{ + + struct stat buf; + struct stat *buf_ptr; + int idir; + + buf_ptr = &buf; + + idir = stat(path, buf_ptr); + if (idir < 0) { + if (errno == 2) { + return 0; + } else { + perror(path); + } + } + + return S_ISDIR(buf_ptr->st_mode); +} + +/***************************************************************************** + + Routine: BuildFilename() + + Description: Build a filename with new extension + + Input: filename - present filename + ext - extension to root of filename + + Output: (filename:r).ext + +*****************************************************************************/ + +char *BuildFilename(char *filename, char *ext) +{ + /* build outgoing filename */ + + char *filename_out; + char *lastper_ptr, *lastdir_ptr; + int root_len; + + lastper_ptr = strrchr(filename,'.'); + lastdir_ptr = strrchr(filename,'/'); + + if ( lastper_ptr <= lastdir_ptr ) { /* no extension */ + root_len = strlen(filename); + } else { /* existing extension */ + root_len = (int)(lastper_ptr - filename); + } + + filename_out = (char *)HDmalloc(root_len + strlen(ext) + 2); + filename_out = strncpy(filename_out, filename, (size_t)root_len); + filename_out[root_len] = '\0'; + filename_out = strcat(filename_out,"."); + filename_out = strcat(filename_out,ext); + + return filename_out; +} + + +/***************************************************************************** + + Routine: PrintOptions_h4toh5() + + Description: This routine prints the acceptable argument formats out to stderr. + + Input: None + + Output: output to stderr + +*****************************************************************************/ + +void PrintOptions_h4toh5(void) +{ + fprintf(stderr,"\nUsage: "); + fprintf(stderr,"\n h4toh5 -h (gives this print-out)\n"); + fprintf(stderr," h4toh5 input.hdf output.h5\n"); + fprintf(stderr," h4toh5 input.hdf\n"); +} + + + + + |