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Diffstat (limited to 'tools/h4toh5anno.c')
| -rw-r--r-- | tools/h4toh5anno.c | 665 |
1 files changed, 0 insertions, 665 deletions
diff --git a/tools/h4toh5anno.c b/tools/h4toh5anno.c deleted file mode 100644 index cd09e26..0000000 --- a/tools/h4toh5anno.c +++ /dev/null @@ -1,665 +0,0 @@ -/*------------------------------------------------------------------------- - * - * Copyright (C) 2000 National Center for Supercomputing Applications. - * All rights reserved. - * - *------------------------------------------------------------------------- - */ - -/****************************************************************************** - - Description: - -1. converter - -See HDF4 to HDF5 mapping specification at -(http://hdf.ncsa.uiuc.edu/HDF5/papers/h4toh5) for the default mapping -from HDF4 object to HDF5 object. - -The whole converter includes 10 files, h4toh5util.h, h4toh5main.h, h4toh5util.c, h4toh5main.c, h4toh5sds.c, h4toh5image.c,h4toh5vdata.c,h4toh5vgroup.c,h4toh5pal.c and h4toh5anno.c. - -2. this file - -converting an hdf4 annotation into an hdf5 attribute of the corresponding object. - - -Author: Kent Yang(ymuqun@ncsa.uiuc.edu) - - -*****************************************************************************/ - -#include "h4toh5main.h" - - -/*------------------------------------------------------------------------- - * Function: Annofil_h4_to_h5 - * - * Purpose: translate file annotation object into hdf5 dataset - * - * Return: FAIL if failed, SUCCEED if successful. - * - * In : - file_id: file identifier - h5_group: hdf5 group id - - *------------------------------------------------------------------------- - */ - -int Annofil_h4_to_h5(int32 file_id,hid_t h5group){ - - int32 an_id; - int32 ann_id; - int32 i; - - int32 ann_length; - - int32 n_file_label = 0; - int32 n_file_desc = 0; - int32 n_data_label = 0; - int32 n_data_desc = 0; - - int32 istat; - - char* ann_buf; - char anno_labelname[30]; - char anno_descname[30]; - char index_str[5]; - - hid_t h5_sid; - hid_t h5_aid; - hid_t sh5str_type; - hid_t sh5str1_type; - hid_t ret; - - an_id = ANstart(file_id); - - if(an_id < 0) { - printf("error in obtaining an_id. \n"); - return FAIL; - } - - istat = ANfileinfo(an_id,&n_file_label,&n_file_desc, - &n_data_label,&n_data_desc); - - if(istat == FAIL) { - printf("error getting file information.\n"); - ANend(file_id); - return FAIL; - } - - for (i = 0; i < n_file_label; i++) { - - ann_id = ANselect(an_id,i,AN_FILE_LABEL); - if(ann_id == FAIL) { - printf("error in obtaining annotation id. \n"); - ANend(file_id); - return FAIL; - } - - ann_length = ANannlen(ann_id); - if(ann_length == FAIL) { - printf("error in obtaining annotation length. \n"); - ANend(file_id); - ANendaccess(ann_id); - return FAIL; - } - - ann_buf = malloc((size_t)ann_length + 1); - if(ann_buf == NULL) { - printf("error in allocating memory. \n"); - return FAIL; - } - h4toh5_ZeroMemory(ann_buf,(ann_length+1)*sizeof(char)); - istat = ANreadann(ann_id,ann_buf,ann_length+1); - - if(istat==FAIL) { - printf("fail to read file information. \n"); - ANend(file_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - h5_sid = H5Screate(H5S_SCALAR); - - if (h5_sid < 0) { - printf("failed to create attribute space for"); - printf(" HDF4 FILE ANNOTATION. \n"); - ANend(file_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - if ((sh5str_type = mkstr(ann_length+1,H5T_STR_SPACEPAD))<0) { - printf("error in making string at FILE lABEL ANNO. \n"); - ANend(file_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - if(conv_int_str(i,index_str)== FAIL) { - printf("fail to convert integer into character format.\n"); - ANend(file_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - strcpy(anno_labelname,HDF4_FILE_LABEL); - strcat(anno_labelname,"_"); - strcat(anno_labelname,index_str); - - - h5_aid = H5Acreate(h5group,anno_labelname,sh5str_type, - h5_sid,H5P_DEFAULT); - - if (h5_aid <0) { - printf("failed to obtain attribute id for"); - printf(" File annotation. \n"); - ANend(file_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - ret = H5Awrite(h5_aid,sh5str_type,(void *)ann_buf); - - if (ret <0) { - printf("failed to obtain attribute.\n "); - ANend(file_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - ret = H5Sclose(h5_sid); - ret = H5Aclose(h5_aid); - free(ann_buf); - ANendaccess(ann_id); - - } - - for (i = 0; i < n_file_desc; i++) { - - ann_id = ANselect(an_id,i,AN_FILE_DESC); - if(ann_id == FAIL) { - printf("error in obtaining annotation id. \n"); - ANend(an_id); - return FAIL; - } - - ann_length = ANannlen(ann_id); - - if(ann_length == FAIL) { - printf("error in obtaining annotation length. \n"); - ANend(an_id); - ANendaccess(ann_id); - return FAIL; - } - - ann_buf = malloc((size_t)ann_length+1); - if(ann_buf == NULL) { - printf("error in allocating memory. \n"); - ANend(an_id); - ANendaccess(ann_id); - return FAIL; - } - h4toh5_ZeroMemory(ann_buf,ann_length+1); - - istat = ANreadann(ann_id,ann_buf,ann_length+1); - - if(istat == FAIL) { - printf("error reading file information. \n"); - ANend(an_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - if ((sh5str1_type = mkstr(ann_length+1,H5T_STR_SPACEPAD))<0) { - printf("error in making string at FILE DESC. \n"); - ANend(an_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - if(conv_int_str(i,index_str)==FAIL) { - printf("fail to convert integer into character format.\n"); - ANend(an_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - strcpy(anno_descname,HDF4_FILE_DESC); - strcat(anno_descname,"_"); - strcat(anno_descname,index_str); - - h5_sid = H5Screate(H5S_SCALAR); - - if (h5_sid < 0) { - printf("failed to create attribute space for"); - printf(" HDF4 FILE ANNOTATION. \n"); - ANend(an_id); - ANendaccess(ann_id); - free(ann_buf); - return FAIL; - } - - h5_aid = H5Acreate(h5group,anno_descname,sh5str1_type, - h5_sid,H5P_DEFAULT); - - if (h5_aid <0) { - - printf("failed to obtain attribute id for"); - printf(" File annotation. \n"); - ANend(an_id); - ANendaccess(ann_id); - H5Sclose(h5_sid); - free(ann_buf); - return FAIL; - } - - ret = H5Awrite(h5_aid,sh5str1_type,(void *)ann_buf); - - if (ret <0) { - printf("failed to obtain attribute.\n "); - ANend(an_id); - ANendaccess(ann_id); - H5Sclose(h5_sid); - H5Aclose(h5_aid); - free(ann_buf); - return FAIL; - } - - ret = H5Sclose(h5_sid); - ret = H5Aclose(h5_aid); - free(ann_buf); - ANendaccess(ann_id); - } - ANend(an_id); - return SUCCEED; -} - - -/*------------------------------------------------------------------------- - * Function: Annoobj_h4_to_h5 - * - * Purpose: translate annotation object into attribute of hdf5 dataset - * - * Return: FAIL if failed, SUCCEED if successful. - * - * In : - file_id: file identifier - obj_ref: object reference - obj_tag: object tag - h5group: hdf5 group - - *------------------------------------------------------------------------- - */ -int Annoobj_h4_to_h5(int32 file_id,int32 obj_ref, int32 obj_tag, - hid_t h5group){ - - int32 an_id; - int32 ann_id; - int32 i; - int32 status; - int32 ann_length; - - int32 n_file_label =-1; - int32 n_file_desc =-1; - int32 n_data_label =-1; - int32 n_data_desc =-1; - - int num_lab_anno; - int num_des_anno; - int32 istat; - int32* des_anno_list=NULL; - int32* lab_anno_list=NULL; - - char* ann_buf; - char* ann_obj_name; - char ann_labelname[30]; - - char index_str[5]; - - hid_t h5_sid; - hid_t h5_aid; - hid_t sh5str_type; - hid_t ret; - - an_id = ANstart(file_id); - if(an_id == FAIL) { - printf("fail to start annotation interface.\n"); - return FAIL; - } - - istat = ANfileinfo(an_id,&n_file_label,&n_file_desc, - &n_data_label,&n_data_desc); - - if(istat == FAIL ) { - printf("error getting file information.\n"); - ANend(an_id); - return FAIL; - } - - num_lab_anno = ANnumann(an_id,AN_DATA_LABEL,obj_tag,obj_ref); - num_des_anno = ANnumann(an_id,AN_DATA_DESC,obj_tag,obj_ref); - - if (num_lab_anno == FAIL) { - printf("error getting number of annotation data label.\n"); - ANend(an_id); - return FAIL; - } - - if (num_des_anno == FAIL) { - printf("error getting number of annotation object label.\n"); - ANend(an_id); - return FAIL; - } - - if(num_lab_anno > 0) { - - for(i=0; i<num_lab_anno;i++) { - ann_id = ANselect(an_id,i,AN_DATA_LABEL); - - if(ann_id == FAIL) { - printf("error in obtaining annotation id.\n"); - ANend(an_id); - return FAIL; - } - - ann_length = ANannlen(ann_id); - if(ann_length == FAIL) { - printf("error in getting annotation length. \n"); - ANendaccess(ann_id); - ANend(an_id); - return FAIL; - } - - ann_buf = malloc((size_t)ann_length+1); - if(ann_buf == NULL) { - printf("error in allocating annotation memory.\n"); - ANendaccess(ann_id); - ANend(an_id); - return FAIL; - } - h4toh5_ZeroMemory(ann_buf,(ann_length+1)*sizeof(char)); - status = ANreadann(ann_id,ann_buf,ann_length+1); - if(status == FAIL) { - printf("error in reading data.\n"); - ANendaccess(ann_id); - ANend(an_id); - free(ann_buf); - return FAIL; - } - - status = ANendaccess(ann_id); - - h5_sid = H5Screate(H5S_SCALAR); - - if (h5_sid < 0) { - printf("failed to create attribute space for"); - printf(" HDF4 FILE ANNOTATION. \n"); - ANend(an_id); - free(lab_anno_list); - free(ann_buf); - return FAIL; - } - - if ((sh5str_type = mkstr(ann_length+1,H5T_STR_SPACEPAD))<0) { - printf("error in making string at OBJ LABEL. \n"); - ANend(an_id); - free(lab_anno_list); - free(ann_buf); - return FAIL; - } - - if(conv_int_str(i,index_str)== FAIL) { - printf("fail to convert annotation index into character format.\n"); - ANend(an_id); - free(lab_anno_list); - free(ann_buf); - return FAIL; - } - - /* obtain annotation object name. The name is defined based on object tag - */ - ann_obj_name = trans_tag_name(obj_tag,AN_DATA_LABEL); - - if(ann_obj_name != NULL) - strcpy(ann_labelname,ann_obj_name); - - strcat(ann_labelname,"_"); - strcat(ann_labelname,index_str); - - h5_aid = H5Acreate(h5group,ann_labelname,sh5str_type, - h5_sid,H5P_DEFAULT); - - if (h5_aid <0) { - - printf("failed to obtain attribute id for"); - printf(" file annotation. \n"); - ANend(an_id); - free(lab_anno_list); - free(ann_buf); - free(ann_obj_name); - return FAIL; - } - - ret = H5Awrite(h5_aid,sh5str_type,(void *)ann_buf); - - if (ret <0) { - printf("failed to obtain attribute.\n "); - ANend(an_id); - free(lab_anno_list); - free(ann_buf); - free(ann_obj_name); - return FAIL; - } - - ret = H5Sclose(h5_sid); - ret = H5Aclose(h5_aid); - free(ann_obj_name); - free(ann_buf); - } - } - - if(num_des_anno > 0) { - - - for (i = 0; i< num_des_anno;i++) { - - ann_id = ANselect(an_id,i,AN_DATA_DESC); - if(ann_id == FAIL) { - printf("error in obtaining annotation id.\n"); - ANend(an_id); - return FAIL; - } - ann_length = ANannlen(ann_id); - if(ann_length == FAIL) { - printf("error in getting annotation length. \n"); - ANendaccess(ann_id); - ANend(an_id); - return FAIL; - } - - ann_buf = malloc((size_t)ann_length+1); - - if(ann_buf == NULL) { - printf("error in allocating annotation memory.\n"); - ANendaccess(ann_id); - ANend(an_id); - return FAIL; - } - - h4toh5_ZeroMemory(ann_buf,(ann_length+1)*sizeof(char)); - ANreadann(ann_id,ann_buf,ann_length+1); - - if ((sh5str_type = mkstr(ann_length+1,H5T_STR_SPACEPAD))<0) { - printf("error in making string at OBJECT DESC. \n"); - ANend(an_id); - free(des_anno_list); - free(ann_buf); - return FAIL; - } - - if(conv_int_str(i,index_str)== FAIL) { - printf("fail to convert annotation index into character format.\n"); - ANend(an_id); - free(ann_buf); - free(des_anno_list); - return FAIL; - } - ann_obj_name = trans_tag_name(obj_tag,AN_DATA_DESC); - if(ann_obj_name == NULL) { - printf("error in obtaining tag name. \n"); - ANend(an_id); - free(ann_buf); - free(des_anno_list); - return FAIL; - } - - strcpy(ann_labelname,ann_obj_name); - strcat(ann_labelname,"_"); - strcat(ann_labelname,index_str); - - h5_sid = H5Screate(H5S_SCALAR); - - if (h5_sid < 0) { - printf("failed to create attribute space for"); - printf(" HDF4 OBJECT ANNOTATION. \n"); - ANend(an_id); - free(des_anno_list); - free(ann_buf); - free(ann_obj_name); - return FAIL; - } - - h5_aid = H5Acreate(h5group,ann_labelname,sh5str_type, - h5_sid,H5P_DEFAULT); - - if (h5_aid <0) { - - ANend(an_id); - free(ann_buf); - free(des_anno_list); - free(ann_obj_name); - printf("failed to obtain attribute id for "); - printf("File annotation. \n"); - return FAIL; - } - - ret = H5Awrite(h5_aid,sh5str_type,(void *)ann_buf); - - if (ret <0) { - printf("failed to obtain attribute.\n "); - ANend(an_id); - free(ann_buf); - free(des_anno_list); - free(ann_obj_name); - return FAIL; - } - ret = H5Sclose(h5_sid); - ret = H5Aclose(h5_aid); - free(ann_obj_name); - - free(ann_buf); - } - - } - ANend(an_id); - return SUCCEED; -} - - -/*------------------------------------------------------------------------- - * Function: trans_tag_name - * - * Purpose: in annotation routine, - translate annotation object tag into corresponding HDF5 object - name. - - * - * Return: NULL if failed, HDF5 object name if successful. - * - * In : - obj_tag: hdf4 object tag - annot_type: hdf4 annotation type - - *------------------------------------------------------------------------- - */ -char* trans_tag_name(int32 obj_tag,ann_type annot_type){ - - char* obj_name; - - obj_name = malloc(strlen(HDF4_VGROUP_LABEL)+1); - - if(obj_name == NULL) { - printf("error in obtaining tag name. \n"); - return NULL; - } - - if (obj_tag == DFTAG_NDG || obj_tag == DFTAG_SDG || obj_tag == DFTAG_SD) { - - if(annot_type == AN_DATA_LABEL) - strcpy(obj_name,HDF4_SDS_LABEL); - - else if(annot_type == AN_DATA_DESC) - strcpy(obj_name,HDF4_SDS_DESC); - else - return NULL; - } - - else if(obj_tag == DFTAG_RIG || obj_tag == DFTAG_RI || obj_tag == DFTAG_RI8) - { - if(annot_type == AN_DATA_LABEL) - strcpy(obj_name,HDF4_IMAGE_LABEL); - else if(annot_type == AN_DATA_DESC) - strcpy(obj_name,HDF4_IMAGE_DESC); - else - return NULL; - } - - else if(obj_tag == DFTAG_VG) { - if(annot_type == AN_DATA_LABEL) - strcpy(obj_name,HDF4_VGROUP_LABEL); - else if(annot_type == AN_DATA_DESC) - strcpy(obj_name,HDF4_VGROUP_DESC); - else - return NULL; - } - - else if(obj_tag == DFTAG_VS || obj_tag == DFTAG_VH) { - if(annot_type == AN_DATA_LABEL) - strcpy(obj_name,HDF4_VDATA_LABEL); - else if(annot_type == AN_DATA_DESC) - strcpy(obj_name,HDF4_VDATA_DESC); - else - return NULL; - } - - else if(obj_tag == DFTAG_LUT) { - if(annot_type == AN_DATA_LABEL) - strcpy(obj_name,HDF4_PAL_LABEL); - else if(annot_type == AN_DATA_DESC) - strcpy(obj_name,HDF4_PAL_DESC); - else - return NULL; - } - return obj_name; -} - - - - - - - - - - - |