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-rw-r--r--tools/h5copy/CMakeLists.txt384
-rw-r--r--tools/h5copy/Makefile.am49
-rw-r--r--tools/h5copy/Makefile.in982
-rw-r--r--tools/h5copy/h5copy.c521
-rw-r--r--tools/h5copy/h5copygentest.c896
-rw-r--r--tools/h5copy/testfiles/h5copy_extlinks_src.h5bin2184 -> 0 bytes
-rw-r--r--tools/h5copy/testfiles/h5copy_extlinks_src.out.ls43
-rw-r--r--tools/h5copy/testfiles/h5copy_extlinks_trg.h5bin2168 -> 0 bytes
-rw-r--r--tools/h5copy/testfiles/h5copy_misc1.out3
-rw-r--r--tools/h5copy/testfiles/h5copy_ref.h5bin9104 -> 0 bytes
-rw-r--r--tools/h5copy/testfiles/h5copy_ref.out.ls31
-rw-r--r--tools/h5copy/testfiles/h5copytst.h5bin30448 -> 0 bytes
-rw-r--r--tools/h5copy/testfiles/h5copytst.out.ls429
-rw-r--r--tools/h5copy/testh5copy.sh548
14 files changed, 0 insertions, 3886 deletions
diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt
deleted file mode 100644
index f9e7c12..0000000
--- a/tools/h5copy/CMakeLists.txt
+++ /dev/null
@@ -1,384 +0,0 @@
-cmake_minimum_required (VERSION 2.8.6)
-PROJECT (HDF5_TOOLS_H5COPY)
-
-#-----------------------------------------------------------------------------
-# Setup include Directories
-#-----------------------------------------------------------------------------
-INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib)
-
-# --------------------------------------------------------------------
-# Add the h5copy and test executables
-# --------------------------------------------------------------------
-ADD_EXECUTABLE (h5copy ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copy.c)
-TARGET_NAMING (h5copy ${LIB_TYPE})
-TARGET_LINK_LIBRARIES (h5copy ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
-SET_TARGET_PROPERTIES (h5copy PROPERTIES FOLDER tools)
-
-SET (H5_DEP_EXECUTABLES h5copy)
-
-##############################################################################
-##############################################################################
-### T E S T I N G ###
-##############################################################################
-##############################################################################
-
-IF (BUILD_TESTING)
- IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS)
- ADD_EXECUTABLE (h5copygentest ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copygentest.c)
- TARGET_NAMING (h5copygentest ${LIB_TYPE})
- TARGET_LINK_LIBRARIES (h5copygentest ${HDF5_LIB_TARGET})
- SET_TARGET_PROPERTIES (h5copygentest PROPERTIES FOLDER generator/tools)
-
- #ADD_TEST (NAME h5copygentest COMMAND $<TARGET_FILE:h5copygentest>)
- ENDIF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS)
-
- # --------------------------------------------------------------------
- # Copy all the HDF5 files from the source directory into the test directory
- # --------------------------------------------------------------------
- SET (LIST_HDF5_TEST_FILES
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_src.h5
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_trg.h5
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_ref.h5
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.h5
- )
-
- SET (LIST_OTHER_TEST_FILES
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_misc1.out
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_src.out.ls
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_ref.out.ls
- ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.out.ls
- )
-
- FILE (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
-
- FOREACH (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
- GET_FILENAME_COMPONENT(fname "${listfiles}" NAME)
- SET (dest "${PROJECT_BINARY_DIR}/testfiles/${fname}")
- #MESSAGE (STATUS " Copying ${listfiles}")
- ADD_CUSTOM_COMMAND (
- TARGET h5copy
- POST_BUILD
- COMMAND ${CMAKE_COMMAND}
- ARGS -E copy_if_different ${listfiles} ${dest}
- )
- ENDFOREACH (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
-
- #
- # This section can be removed, but leave here for a reference later.
- # Purpose: '-l3' ignores top 3 lines when copy text file.
- #
- #FOREACH (listfiles ${LIST_OTHER_TEST_FILES})
- # SET (lsdest "${PROJECT_BINARY_DIR}/testfiles/${listfiles}")
- # ADD_CUSTOM_COMMAND (
- # TARGET h5copy
- # POST_BUILD
- # COMMAND ${XLATE_UTILITY}
- # ARGS ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/${listfiles} ${lsdest} -l3
- # )
- #ENDFOREACH (listfiles ${LIST_OTHER_TEST_FILES})
-
-##############################################################################
-##############################################################################
-### T H E T E S T S M A C R O S ###
-##############################################################################
-##############################################################################
-
- #
- # Perform h5copy according to passing parmeters
- #
- MACRO (ADD_H5_F_TEST testname resultcode infile outfile fparam vparam sparam srcname dparam dstname)
- ADD_TEST (
- NAME H5COPY_F-${testname}
- COMMAND $<TARGET_FILE:h5copy> -f ${fparam} -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY_F-${testname}")
- ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname})
- ENDMACRO (ADD_H5_F_TEST)
-
- MACRO (ADD_H5_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname)
- ADD_TEST (
- NAME H5COPY-${testname}
- COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-${testname}")
- ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname})
- ENDMACRO (ADD_H5_TEST)
-
- MACRO (ADD_H5_DIFF_TEST testname resultcode testdepends infile outfile srcname dstname)
- # resultcode=2 will cause the test to skip the diff test
- IF (NOT ${resultcode} STREQUAL "2")
- ADD_TEST (
- NAME H5COPY-DIFF_${testname}
- COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${outfile} ${srcname} ${dstname}
- )
- SET_TESTS_PROPERTIES(H5COPY-DIFF_${testname} PROPERTIES DEPENDS ${testdepends})
- SET (last_test "H5COPY-DIFF_${testname}")
- IF (${resultcode} STREQUAL "1")
- SET_TESTS_PROPERTIES (H5COPY-DIFF_${testname} PROPERTIES WILL_FAIL "true")
- ENDIF (${resultcode} STREQUAL "1")
- ENDIF (NOT ${resultcode} STREQUAL "2")
- ENDMACRO (ADD_H5_DIFF_TEST)
-
- #
- # Test result with h5ls
- #
- MACRO (ADD_H5LS_TEST file filetest)
- # If using memchecker add tests without using scripts
- IF (HDF5_ENABLE_USING_MEMCHECKER)
- ADD_TEST (NAME H5COPY-h5ls_${file}-${filetest} COMMAND $<TARGET_FILE:h5ls> -Svr ./testfiles/${file}.out.h5)
- ELSE (HDF5_ENABLE_USING_MEMCHECKER)
- ADD_TEST (
- NAME H5COPY-h5ls_${file}-${filetest}
- COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>"
- -D "TEST_ARGS=-Svr;./testfiles/${file}.out.h5"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
- -D "TEST_OUTPUT=./testfiles/${file}.out.out"
- -D "TEST_EXPECT=0"
- -D "TEST_REFERENCE=./testfiles/${file}.out.ls"
- -D "TEST_MASK=true"
- -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
- )
- ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-h5ls_${file}-${filetest} PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-h5ls_${file}-${filetest}")
- ENDMACRO (ADD_H5LS_TEST)
-
- #
- # Similiar to ADD_H5_TEST macro. Compare to outputs from source & target
- # files instead of checking with h5ls.
- #
- MACRO (ADD_H5_CMP_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname)
- # If using memchecker add tests without using scripts
- IF (HDF5_ENABLE_USING_MEMCHECKER)
- ADD_TEST (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN})
- IF (${resultcode} STREQUAL "1")
- SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES WILL_FAIL "true")
- ENDIF (${resultcode} STREQUAL "1")
- ELSE (HDF5_ENABLE_USING_MEMCHECKER)
- ADD_TEST (
- NAME H5COPY-CMP-${testname}
- COMMAND "${CMAKE_COMMAND}"
- -D "TEST_PROGRAM=$<TARGET_FILE:h5copy>"
- -D "TEST_ARGS=-i;./testfiles/${infile};-o;./testfiles/${outfile};${vparam};${sparam};${srcname};${dparam};${dstname}"
- -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
- -D "TEST_OUTPUT=./testfiles/${testname}.out.out"
- -D "TEST_EXPECT=${resultcode}"
- -D "TEST_REFERENCE=./testfiles/${testname}.out"
- -D "TEST_MASK=true"
- -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
- )
- ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-CMP-${testname}")
- ENDMACRO (ADD_H5_CMP_TEST)
-
-##############################################################################
-##############################################################################
-### T H E T E S T S ###
-##############################################################################
-##############################################################################
-
- # --------------------------------------------------------------------
- # test file names
- # --------------------------------------------------------------------
- SET (HDF_FILE1 h5copytst)
- SET (HDF_FILE2 h5copy_ref)
- SET (HDF_EXT_SRC_FILE h5copy_extlinks_src)
- SET (HDF_EXT_TRG_FILE h5copy_extlinks_trg)
-
- # Remove any output file left over from previous test run
- ADD_TEST (
- NAME H5COPY-clearall-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- ./testfiles/${HDF_FILE1}.out.h5
- ./testfiles/${HDF_FILE1}.out.out
- ./testfiles/${HDF_FILE1}.out.out.err
- ./testfiles/${HDF_FILE2}.out.h5
- ./testfiles/${HDF_FILE2}.out.out
- ./testfiles/${HDF_FILE2}.out.out.err
- ./testfiles/${HDF_EXT_SRC_FILE}.out.h5
- ./testfiles/${HDF_EXT_SRC_FILE}.out.out
- ./testfiles/${HDF_EXT_SRC_FILE}.out.out.err
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-clearall-objects PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-clearall-objects")
-
- # "Test copying various forms of datasets"
- ADD_H5_TEST (simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s simple -d simple)
- ADD_H5_TEST (chunk 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s chunk -d chunk)
- ADD_H5_TEST (compact 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compact -d compact)
- ADD_H5_TEST (compound 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d compound)
- ADD_H5_TEST (compressed 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compressed -d compressed)
- ADD_H5_TEST (named_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s named_vl -d named_vl)
- ADD_H5_TEST (nested_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s nested_vl -d nested_vl)
-
- # "Test copying dataset within group in source file to root of destination"
- ADD_H5_TEST (simple_top 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets/simple -d simple_top)
-
- # "Test copying & renaming dataset"
- ADD_H5_TEST (rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d rename)
-
- # "Test copying empty, 'full' & 'nested' groups"
- ADD_H5_TEST (grp_empty 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_empty -d grp_empty)
- ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_dsets)
- ADD_H5_TEST (grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_nested -d grp_nested)
-
- # "Test copying dataset within group in source file to group in destination"
- ADD_H5_TEST (simple_group 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets/simple -d /grp_dsets/simple_group)
-
- # "Test copying & renaming group"
- ADD_H5_TEST (grp_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_rename)
-
- # "Test copying 'full' group hierarchy into group in destination file"
- ADD_H5_TEST (grp_dsets_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d /grp_rename/grp_dsets)
-
- # "Test copying objects into group hier. that doesn't exist yet in destination file"
- ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B1/simple)
- ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B2/simple2)
- ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets/simple -d /C/D/simple)
- ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets)
- ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_nested -d /G/H/grp_nested)
-
- # Verify that the file created above is correct
- ADD_H5LS_TEST (${HDF_FILE1} basic)
-
-############# COPY REFERENCES ##############
-
- # Remove any output file left over from previous test run
- ADD_TEST (
- NAME H5COPY-clear-refs
- COMMAND ${CMAKE_COMMAND}
- -E remove
- ./testfiles/${HDF_FILE2}.out.h5
- ./testfiles/${HDF_FILE2}.out.out
- ./testfiles/${HDF_FILE2}.out.out.err
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-clear-refs PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-clear-refs")
-
- # "Test copying object and region references"
- ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ${HDF_FILE2}.out.h5 ref -v -s / -d /COPY)
-
- # Verify that the file created above is correct
- ADD_H5LS_TEST (${HDF_FILE2} refs)
-
-############# COPY EXT LINKS ##############
-
- # Remove any output file left over from previous test run
- ADD_TEST (
- NAME H5COPY-clear-ext-links
- COMMAND ${CMAKE_COMMAND}
- -E remove
- ./testfiles/${HDF_EXT_SRC_FILE}.out.h5
- ./testfiles/${HDF_EXT_SRC_FILE}.out.out
- ./testfiles/${HDF_EXT_SRC_FILE}.out.out.err
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-clear-ext-links PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-clear-ext-links")
-
- # "Test copying external link directly without -f ext"
- ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_dset -d /copy1_dset)
-
- # "Test copying external link directly with -f ext"
- ADD_H5_F_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_dset -d /copy2_dset)
-
- # "Test copying dangling external link (no obj) directly without -f ext"
- ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1)
-
- # "Test copying dangling external link (no obj) directly with -f ext"
- ADD_H5_F_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2)
-
- # "Test copying dangling external link (no file) directly without -f ext"
- ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1)
-
- # "Test copying dangling external link (no file) directly with -f ext"
- ADD_H5_F_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2)
-
- # "Test copying a group contains external links without -f ext"
- ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext -d /copy1_group)
-
- # "Test copying a group contains external links with -f ext"
- ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext -d /copy2_group)
-
- # Verify that the file created above is correct
- ADD_H5LS_TEST (${HDF_EXT_SRC_FILE} links)
-
-############# Test misc. ##############
- # Remove any output file left over from previous test run
- ADD_TEST (
- NAME H5COPY-clear-misc
- COMMAND ${CMAKE_COMMAND}
- -E remove
- ./testfiles/h5copy_misc1.out.out
- ./testfiles/h5copy_misc1.out.out.err
- ./testfiles/${HDF_FILE1}.out.h5
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-clear-misc PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-clear-misc")
-
- #-----------------------------------------------------------------
- # "Test copying object into group which doesn't exist, without -p"
- #
- ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /g1/g2/simple)
- # Remove any output file left over from previous test run
- ADD_TEST (
- NAME H5COPY-clear-samefile
- COMMAND ${CMAKE_COMMAND}
- -E remove
- ./testfiles/${HDF_FILE1}.out.h5
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5COPY-clear-samefile PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5COPY-clear-samefile")
-
- #-------------------------------------------
- # "Test copying objects to the same file "
- #
- # create temporary test file with some objects
- ADD_H5_TEST (samefile1_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple)
- ADD_H5_TEST (samefile2_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets)
- # actual test cases
- # - dataset
- ADD_H5_TEST (samefile1 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple_cp)
- # - group with some datasets
- ADD_H5_TEST (samefile2 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets_cp)
-ENDIF (BUILD_TESTING)
-
-##############################################################################
-##############################################################################
-### I N S T A L L A T I O N ###
-##############################################################################
-##############################################################################
-
-#-----------------------------------------------------------------------------
-# Rules for Installation of tools using make Install target
-#-----------------------------------------------------------------------------
-INSTALL (
- TARGETS
- h5copy
- RUNTIME DESTINATION
- ${HDF5_INSTALL_BIN_DIR}/tools
- COMPONENT
- toolsapplications
-)
diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am
deleted file mode 100644
index dd0c5c3..0000000
--- a/tools/h5copy/Makefile.am
+++ /dev/null
@@ -1,49 +0,0 @@
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-##
-## Makefile.am
-## Run automake to generate a Makefile.in from this file.
-#
-# HDF5 Library Makefile(.in)
-#
-
-include $(top_srcdir)/config/commence.am
-
-# Include src and tools/lib directories
-INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
-
-# Test programs and scripts
-TEST_PROG=h5copygentest
-TEST_SCRIPT=$(srcdir)/testh5copy.sh
-check_SCRIPTS=$(TEST_SCRIPT)
-SCRIPT_DEPEND=h5copy$(EXEEXT)
-
-# This is our main target, the h5copy tool
-bin_PROGRAMS=h5copy
-check_PROGRAMS=$(TEST_PROG)
-
-# Add h5copy specific linker flags here
-h5copy_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
-
-# source file for the test file generator
-h5copygentest_SOURCES=h5copygentest.c
-
-# All programs depend on the hdf5 and h5tools libraries
-LDADD=$(LIBH5TOOLS) $(LIBHDF5)
-
-# Temporary files. *.h5 are generated by h5dumpgentest. They should
-# copied to the testfiles/ directory if update is required.
-CHECK_CLEANFILES+=*.h5
-
-include $(top_srcdir)/config/conclude.am
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-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c
deleted file mode 100644
index 574ba94..0000000
--- a/tools/h5copy/h5copy.c
+++ /dev/null
@@ -1,521 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-#include "H5private.h"
-#include "h5tools.h"
-#include "h5tools_utils.h"
-#include <string.h>
-#include <stdlib.h>
-
-/* Name of tool */
-#define PROGRAMNAME "h5copy"
-
-/* command-line options: short and long-named parameters */
-static const char *s_opts = "d:f:hi:o:ps:vV";
-static struct long_options l_opts[] = {
- { "destination", require_arg, 'd' },
- { "flag", require_arg, 'f' },
- { "help", no_arg, 'h' },
- { "input", require_arg, 'i' },
- { "output", require_arg, 'o' },
- { "parents", no_arg, 'p' },
- { "source", require_arg, 's' },
- { "verbose", no_arg, 'v' },
- { "version", no_arg, 'V' },
- { NULL, 0, '\0' }
-};
-
-/*-------------------------------------------------------------------------
- * Function: leave
- *
- * Purpose: Shutdown MPI & HDF5 and call exit()
- *
- * Return: Does not return
- *
- * Programmer: Quincey Koziol
- * Saturday, 31. January 2004
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-leave(int ret)
-{
- h5tools_close();
- HDexit(ret);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: usage
- *
- * Purpose: Prints a usage message on stderr and then returns.
- *
- * Return: void
- *
- * Programmer: Pedro Vicente Nunes, 7/8/2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-usage (void)
-{
- HDfprintf(stdout, "\
-usage: h5copy [OPTIONS] [OBJECTS...]\n\
- OBJECTS\n\
- -i, --input input file name\n\
- -o, --output output file name\n\
- -s, --source source object name\n\
- -d, --destination destination object name\n\
- OPTIONS\n\
- -h, --help Print a usage message and exit\n\
- -p, --parents No error if existing, make parent groups as needed\n\
- -v, --verbose Print information about OBJECTS and OPTIONS\n\
- -V, --version Print version number and exit\n\
- -f, --flag Flag type\n\n\
- Flag type is one of the following strings:\n\n\
- shallow Copy only immediate members for groups\n\n\
- soft Expand soft links into new objects\n\n\
- ext Expand external links into new objects\n\n\
- ref Copy references and any referenced objects, i.e., objects\n\
- that the references point to.\n\
- Referenced objects are copied in addition to the objects\n\
- specified on the command line and reference datasets are\n\
- populated with correct reference values. Copies of referenced\n\
- datasets outside the copy range specified on the command line\n\
- will normally have a different name from the original.\n\
- (Default:Without this option, reference value(s) in any\n\
- reference datasets are set to NULL and referenced objects are\n\
- not copied unless they are otherwise within the copy range\n\
- specified on the command line.)\n\n\
- noattr Copy object without copying attributes\n\n\
- allflags Switches all flags from the default to the non-default setting\n\n\
- These flag types correspond to the following API symbols\n\n\
- H5O_COPY_SHALLOW_HIERARCHY_FLAG\n\
- H5O_COPY_EXPAND_SOFT_LINK_FLAG\n\
- H5O_COPY_EXPAND_EXT_LINK_FLAG\n\
- H5O_COPY_EXPAND_REFERENCE_FLAG\n\
- H5O_COPY_WITHOUT_ATTR_FLAG\n\
- H5O_COPY_ALL\n");
-}
-
-
-
-/*-------------------------------------------------------------------------
- * Function: parse_flag
- *
- * Purpose: read the flag -f STRING
- *
- * STRING is one of the following (API symbol and description)
- *
- * shallow H5O_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups
- * soft H5O_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects
- * ext H5O_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects
- * ref H5O_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references
- * noattr H5O_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes
- * allflags Switches all flags from the default to the non-default setting
- *
- * Return: Success: SUCCEED
- * Failure: FAIL
- *
- * Programmer: Pedro Vicente Nunes, 7/8/2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-
-
-static int parse_flag(const char* str_flag, unsigned *flag)
-{
- unsigned fla=0;
-
- if (HDstrcmp(str_flag,"shallow")==0)
- {
- fla = H5O_COPY_SHALLOW_HIERARCHY_FLAG;
- }
- else if (HDstrcmp(str_flag,"soft")==0)
- {
- fla = H5O_COPY_EXPAND_SOFT_LINK_FLAG;
- }
- else if (HDstrcmp(str_flag,"ext")==0)
- {
- fla = H5O_COPY_EXPAND_EXT_LINK_FLAG;
- }
- else if (HDstrcmp(str_flag,"ref")==0)
- {
- fla = H5O_COPY_EXPAND_REFERENCE_FLAG;
- }
- else if (HDstrcmp(str_flag,"noattr")==0)
- {
- fla = H5O_COPY_WITHOUT_ATTR_FLAG;
- }
- else if (HDstrcmp(str_flag,"allflags")==0)
- {
- fla = H5O_COPY_ALL;
- }
- else if (HDstrcmp(str_flag,"nullmsg")==0)
- {
- fla = H5O_COPY_PRESERVE_NULL_FLAG;
- }
- else
- {
- error_msg("Error in input flag\n");
- return -1;
- }
-
- *flag = (*flag) | fla;
-
- return 0;
-}
-
-/*-------------------------------------------------------------------------
- * Function: main
- *
- * Purpose: main program
- *
- * Programmer: Pedro Vicente Nunes
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-
-int
-main (int argc, const char *argv[])
-{
- hid_t fid_src=-1;
- hid_t fid_dst=-1;
- char *fname_src=NULL;
- char *fname_dst=NULL;
- char *oname_src=NULL;
- char *oname_dst=NULL;
- unsigned flag=0;
- unsigned verbose=0;
- unsigned parents=0;
- hid_t ocpl_id = (-1); /* Object copy property list */
- hid_t lcpl_id = (-1); /* Link creation property list */
- char str_flag[20];
- int opt;
- int li_ret;
- h5tool_link_info_t linkinfo;
- int i, len;
- char *str_ptr=NULL;
-
- h5tools_setprogname(PROGRAMNAME);
- h5tools_setstatus(EXIT_SUCCESS);
-
- /* initialize h5tools lib */
- h5tools_init();
-
- /* init linkinfo struct */
- HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t));
-
- /* Check for no command line parameters */
- if(argc == 1)
- {
- usage();
- leave(EXIT_FAILURE);
- } /* end if */
-
- /* parse command line options */
- while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF)
- {
- switch ((char)opt)
- {
- case 'd':
- oname_dst = HDstrdup(opt_arg);
- break;
-
- case 'f':
- /* validate flag */
- if (parse_flag(opt_arg,&flag)<0)
- {
- usage();
- leave(EXIT_FAILURE);
- }
- HDstrcpy(str_flag,opt_arg);
- break;
-
- case 'h':
- usage();
- leave(EXIT_SUCCESS);
- break;
-
- case 'i':
- fname_src = HDstrdup(opt_arg);
- break;
-
- case 'o':
- fname_dst = HDstrdup(opt_arg);
- break;
-
- case 'p':
- parents = 1;
- break;
-
- case 's':
- oname_src = HDstrdup(opt_arg);
- break;
-
- case 'V':
- print_version(h5tools_getprogname());
- leave(EXIT_SUCCESS);
- break;
-
- case 'v':
- verbose = 1;
- break;
-
- default:
- usage();
- leave(EXIT_FAILURE);
- }
- } /* end of while */
-
-/*-------------------------------------------------------------------------
- * check for missing file/object names
- *-------------------------------------------------------------------------*/
-
- if (fname_src==NULL)
- {
- error_msg("Input file name missing\n");
- usage();
- leave(EXIT_FAILURE);
- }
-
- if (fname_dst==NULL)
- {
- error_msg("Output file name missing\n");
- usage();
- leave(EXIT_FAILURE);
- }
-
- if (oname_src==NULL)
- {
- error_msg("Source object name missing\n");
- usage();
- leave(EXIT_FAILURE);
- }
-
- if (oname_dst==NULL)
- {
- error_msg("Destination object name missing\n");
- usage();
- leave(EXIT_FAILURE);
- }
-
- /*-------------------------------------------------------------------------
- * open output file
- *-------------------------------------------------------------------------*/
-
- /* Attempt to open an existing HDF5 file first. Need to open the dst file
- before the src file just in case that the dst and src are the same file
- */
- fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, H5P_DEFAULT, NULL, NULL, 0);
-
- /*-------------------------------------------------------------------------
- * open input file
- *-------------------------------------------------------------------------*/
-
- fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0);
-
- /*-------------------------------------------------------------------------
- * test for error in opening input file
- *-------------------------------------------------------------------------*/
- if (fid_src==-1)
- {
- error_msg("Could not open input file <%s>...Exiting\n", fname_src);
- if (fname_src)
- HDfree(fname_src);
- leave(EXIT_FAILURE);
- }
-
-
- /*-------------------------------------------------------------------------
- * create an output file when failed to open it
- *-------------------------------------------------------------------------*/
-
- /* If we couldn't open an existing file, try creating file */
- /* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file) */
- if(fid_dst < 0)
- fid_dst = H5Fcreate(fname_dst, H5F_ACC_EXCL, H5P_DEFAULT, H5P_DEFAULT);
-
- /*-------------------------------------------------------------------------
- * test for error in opening output file
- *-------------------------------------------------------------------------*/
- if (fid_dst==-1)
- {
- error_msg("Could not open output file <%s>...Exiting\n", fname_dst);
- if (fname_src)
- HDfree(fname_src);
- if (fname_dst)
- HDfree(fname_dst);
- leave(EXIT_FAILURE);
- }
-
- /*-------------------------------------------------------------------------
- * print some info
- *-------------------------------------------------------------------------*/
-
- if (verbose)
- {
- printf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n",
- fname_src, oname_src, fname_dst, oname_dst);
- if (flag)
- printf("Using %s flag\n", str_flag);
- }
-
-
- /*-------------------------------------------------------------------------
- * create property lists for copy
- *-------------------------------------------------------------------------*/
-
- /* create property to pass copy options */
- if ( (ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0)
- goto error;
-
- /* set options for object copy */
- if (flag)
- {
- if ( H5Pset_copy_object(ocpl_id, flag) < 0)
- goto error;
- }
-
- /* Create link creation property list */
- if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) {
- error_msg("Could not create link creation property list\n");
- goto error;
- } /* end if */
-
- /* Check for creating intermediate groups */
- if(parents) {
- /* Set the intermediate group creation property */
- if(H5Pset_create_intermediate_group(lcpl_id, 1) < 0) {
- error_msg("Could not set property for creating parent groups\n");
- goto error;
- } /* end if */
-
- /* Display some output if requested */
- if(verbose)
- printf("%s: Creating parent groups\n", h5tools_getprogname());
- } /* end if */
- else /* error, if parent groups doesn't already exist in destination file */
- {
- len = HDstrlen(oname_dst);
- /* check if all the parents groups exist. skip root group */
- for (i = 1; i < len; i++)
- {
- if ('/'==oname_dst[i])
- {
- str_ptr = (char*)HDcalloc((size_t)i+1, sizeof(char));
- HDstrncpy (str_ptr, oname_dst, (size_t)i);
- str_ptr[i]='\0';
- if (H5Lexists(fid_dst, str_ptr, H5P_DEFAULT) <= 0)
- {
- error_msg("group <%s> doesn't exist. Use -p to create parent groups.\n", str_ptr);
- HDfree(str_ptr);
- goto error;
- }
- HDfree(str_ptr);
- }
- }
- }
-
- /*-------------------------------------------------------------------------
- * do the copy
- *-------------------------------------------------------------------------*/
-
- if(verbose)
- linkinfo.opt.msg_mode = 1;
-
- li_ret = H5tools_get_symlink_info(fid_src, oname_src, &linkinfo, 1);
- if (li_ret == 0) /* dangling link */
- {
- if(H5Lcopy(fid_src, oname_src,
- fid_dst, oname_dst,
- H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto error;
- }
- else /* valid link */
- {
- if (H5Ocopy(fid_src, /* Source file or group identifier */
- oname_src, /* Name of the source object to be copied */
- fid_dst, /* Destination file or group identifier */
- oname_dst, /* Name of the destination object */
- ocpl_id, /* Object copy property list */
- lcpl_id)<0) /* Link creation property list */
- goto error;
- }
-
- /* free link info path */
- if (linkinfo.trg_path)
- HDfree((char*)linkinfo.trg_path);
-
- /* close propertis */
- if(H5Pclose(ocpl_id)<0)
- goto error;
- if(H5Pclose(lcpl_id)<0)
- goto error;
-
- /* close files */
- if (H5Fclose(fid_src)<0)
- goto error;
- if (H5Fclose(fid_dst)<0)
- goto error;
-
- if (fname_src)
- HDfree(fname_src);
- if (fname_dst)
- HDfree(fname_dst);
- if (oname_dst)
- HDfree(oname_dst);
- if (oname_src)
- HDfree(oname_src);
-
- h5tools_close();
-
- return EXIT_SUCCESS;
-
-error:
- printf("Error in copy...Exiting\n");
-
- /* free link info path */
- if (linkinfo.trg_path)
- HDfree((char*)linkinfo.trg_path);
-
- H5E_BEGIN_TRY {
- H5Pclose(ocpl_id);
- H5Pclose(lcpl_id);
- H5Fclose(fid_src);
- H5Fclose(fid_dst);
- } H5E_END_TRY;
- if (fname_src)
- HDfree(fname_src);
- if (fname_dst)
- HDfree(fname_dst);
- if (oname_dst)
- HDfree(oname_dst);
- if (oname_src)
- HDfree(oname_src);
-
- h5tools_close();
-
- return EXIT_FAILURE;
-}
-
diff --git a/tools/h5copy/h5copygentest.c b/tools/h5copy/h5copygentest.c
deleted file mode 100644
index e658e92..0000000
--- a/tools/h5copy/h5copygentest.c
+++ /dev/null
@@ -1,896 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/*
- * Generate the binary hdf5 file for the h5copy tests
- */
-#include <stdlib.h>
-#include "hdf5.h"
-#include "H5private.h"
-
-/* HDF file names */
-#define HDF_FILE1 "h5copytst.h5"
-#define HDF_FILE2 "h5copy_ref.h5"
-#define HDF_EXT_SRC_FILE "h5copy_extlinks_src.h5"
-#define HDF_EXT_TRG_FILE "h5copy_extlinks_trg.h5"
-
-/* objects in HDF_FILE1 */
-#define DATASET_SIMPLE "simple"
-#define DATASET_CHUNK "chunk"
-#define DATASET_COMPACT "compact"
-#define DATASET_COMPOUND "compound"
-#define DATASET_COMPRESSED "compressed"
-#define DATASET_NAMED_VL "named_vl"
-#define DATASET_NESTED_VL "nested_vl"
-#define GROUP_EMPTY "grp_empty"
-#define GROUP_DATASETS "grp_dsets"
-#define GROUP_NESTED "grp_nested"
-
-/* Obj reference */
-#define OBJ_REF_DS "Dset1"
-#define OBJ_REF_GRP "Group"
-/* Region reference */
-#define REG_REF_DS1 "Dset_REGREF"
-#define REG_REF_DS2 "Dset2"
-
-
-/*-------------------------------------------------------------------------
- * Function: gent_simple
- *
- * Purpose: Generate a simple dataset in LOC_ID
- *
- *-------------------------------------------------------------------------
- */
-static void gent_simple(hid_t loc_id)
-{
- hid_t sid, did;
- hsize_t dims[1] = {6};
- int buf[6] = {1,2,3,4,5,6};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create dataset */
- did = H5Dcreate2(loc_id, DATASET_SIMPLE, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
-}
-
-/*-------------------------------------------------------------------------
- * Function: gent_chunked
- *
- * Purpose: Generate a chunked dataset in LOC_ID
- *
- *-------------------------------------------------------------------------
- */
-static void gent_chunked(hid_t loc_id)
-{
- hid_t sid, did, pid;
- hsize_t dims[1] = {6};
- hsize_t chunk_dims[1] = {2};
- int buf[6] = {1,2,3,4,5,6};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create property plist */
- pid = H5Pcreate(H5P_DATASET_CREATE);
- H5Pset_chunk(pid, 1, chunk_dims);
-
- /* create dataset */
- did = H5Dcreate2(loc_id, DATASET_CHUNK, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Pclose(pid);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gent_compact
- *
- * Purpose: Generate a compact dataset in LOC_ID
- *
- *-------------------------------------------------------------------------
- */
-static void gent_compact(hid_t loc_id)
-{
- hid_t sid, did, pid;
- hsize_t dims[1] = {6};
- int buf[6] = {1,2,3,4,5,6};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create property plist */
- pid = H5Pcreate(H5P_DATASET_CREATE);
- H5Pset_layout (pid,H5D_COMPACT);
-
- /* create dataset */
- did = H5Dcreate2(loc_id, DATASET_COMPACT, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Pclose(pid);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gent_compound
- *
- * Purpose: Generate a compound dataset in LOC_ID
- *
- *-------------------------------------------------------------------------
- */
-static void gent_compound(hid_t loc_id)
-{
- typedef struct s_t
- {
- char str1[20];
- char str2[20];
- } s_t;
- hid_t sid, did, tid_c, tid_s;
- hsize_t dims[1] = {2};
- s_t buf[2] = {{"str1", "str2"}, {"str3", "str4"}};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create a compound type */
- tid_c = H5Tcreate(H5T_COMPOUND, sizeof(s_t));
- tid_s = H5Tcopy(H5T_C_S1);
- H5Tset_size(tid_s, 20);
-
- H5Tinsert(tid_c, "str1", HOFFSET(s_t,str1), tid_s);
- H5Tinsert(tid_c, "str2", HOFFSET(s_t,str2), tid_s);
-
- /* create dataset */
- did = H5Dcreate2(loc_id, DATASET_COMPOUND, tid_c, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, tid_c, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Tclose(tid_c);
- H5Tclose(tid_s);
-}
-
-/*-------------------------------------------------------------------------
- * Function: gent_compressed
- *
- * Purpose: Generate a compressed dataset in LOC_ID
- *
- *-------------------------------------------------------------------------
- */
-static void gent_compressed(hid_t loc_id)
-{
- hid_t sid, did, pid;
- hsize_t dims[1] = {6};
- hsize_t chunk_dims[1] = {2};
- int buf[6] = {1,2,3,4,5,6};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create property plist for chunk*/
- pid = H5Pcreate(H5P_DATASET_CREATE);
- H5Pset_chunk(pid, 1, chunk_dims);
-
- /* set the deflate filter */
-#if defined (H5_HAVE_FILTER_DEFLATE)
- H5Pset_deflate(pid, 1);
-#endif
-
- /* create dataset */
- did = H5Dcreate2(loc_id, DATASET_COMPRESSED, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Pclose(pid);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gent_named_vl
- *
- * Purpose: Generate a variable lenght named datatype for a dataset in
- LOC_ID
- *
- *-------------------------------------------------------------------------
- */
-static void gent_named_vl(hid_t loc_id)
-{
- hid_t sid, did, tid;
- hsize_t dims[1] = {2};
- hvl_t buf[2];
-
- /* allocate and initialize VL dataset to write */
- buf[0].len = 1;
- buf[0].p = malloc( 1 * sizeof(int));
- ((int *)buf[0].p)[0]=1;
- buf[1].len = 2;
- buf[1].p = malloc( 2 * sizeof(int));
- ((int *)buf[1].p)[0]=2;
- ((int *)buf[1].p)[1]=3;
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create datatype */
- tid = H5Tvlen_create(H5T_NATIVE_INT);
-
- /* create named datatype */
- H5Tcommit2(loc_id, "vl", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* create dataset */
- did = H5Dcreate2(loc_id, DATASET_NAMED_VL, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf);
- H5Sclose(sid);
- H5Dclose(did);
- H5Tclose(tid);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gent_nested_vl
- *
- * Purpose: Generate a nested variable length dataset in LOC_ID
- *
- *-------------------------------------------------------------------------
- */
-static void gent_nested_vl(hid_t loc_id)
-{
- hid_t sid, did, tid1, tid2;
- hsize_t dims[1] = {2};
- hvl_t buf[2];
- hvl_t *tvl;
-
- /* allocate and initialize VL dataset to write */
- buf[0].len = 1;
- buf[0].p = malloc( 1 * sizeof(hvl_t));
- tvl = buf[0].p;
- tvl->p = malloc( 1 * sizeof(int) );
- tvl->len = 1;
- ((int *)tvl->p)[0]=1;
-
- buf[1].len = 1;
- buf[1].p = malloc( 1 * sizeof(hvl_t));
- tvl = buf[1].p;
- tvl->p = malloc( 2 * sizeof(int) );
- tvl->len = 2;
- ((int *)tvl->p)[0]=2;
- ((int *)tvl->p)[1]=3;
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create datatype */
- tid1 = H5Tvlen_create(H5T_NATIVE_INT);
-
- /* create nested VL datatype */
- tid2 = H5Tvlen_create(tid1);
-
- /* create dataset */
- did = H5Dcreate2(loc_id, DATASET_NESTED_VL, tid2, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Dvlen_reclaim(tid2,sid,H5P_DEFAULT,buf);
- H5Sclose(sid);
- H5Dclose(did);
- H5Tclose(tid1);
- H5Tclose(tid2);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gent_datasets
- *
- * Purpose: Generate all datasets in a particular location
- *
- *-------------------------------------------------------------------------
- */
-static void gent_datasets(hid_t loc_id)
-{
- gent_simple(loc_id);
- gent_chunked(loc_id);
- gent_compact(loc_id);
- gent_compound(loc_id);
- gent_compressed(loc_id);
- gent_named_vl(loc_id);
- gent_nested_vl(loc_id);
-}
-
-/*-------------------------------------------------------------------------
- * Function: gent_empty_group
- *
- * Purpose: Generate an empty group in a location
- *
- *-------------------------------------------------------------------------
- */
-static void gent_empty_group(hid_t loc_id)
-{
- hid_t gid;
-
- /* Create group in location */
- gid = H5Gcreate2(loc_id, GROUP_EMPTY, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* Release resources */
- H5Gclose(gid);
-}
-
-/*-------------------------------------------------------------------------
- * Function: gent_nested_datasets
- *
- * Purpose: Generate a group in a location and populate it with the "standard"
- * datasets
- *
- *-------------------------------------------------------------------------
- */
-static void gent_nested_datasets(hid_t loc_id)
-{
- hid_t gid;
-
- /* Create group in location */
- gid = H5Gcreate2(loc_id, GROUP_DATASETS, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* Add datasets to group created */
- gent_datasets(gid);
-
- /* Release resources */
- H5Gclose(gid);
-}
-
-/*-------------------------------------------------------------------------
- * Function: gent_nested_group
- *
- * Purpose: Generate a group in a location and populate it with another group
- * containing the "standard" datasets
- *
- *-------------------------------------------------------------------------
- */
-static void gent_nested_group(hid_t loc_id)
-{
- hid_t gid;
-
- /* Create group in location */
- gid = H5Gcreate2(loc_id, GROUP_NESTED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* Add datasets to group created */
- gent_nested_datasets(gid);
-
- /* Release resources */
- H5Gclose(gid);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gen_obj_ref
- *
- * Purpose: Generate object references to dataset and group
- *
- * Programmer: Jonathan Kim (Feb 23, 2010)
- *------------------------------------------------------------------------*/
-static herr_t gen_obj_ref(hid_t loc_id)
-{
- hid_t sid=0, oid=0;
- hsize_t dims1[1]={3};
- hsize_t dims2[1]={2};
- int data[3] = {10,20,30};
- int status;
-
- /*---------------------
- * create obj references to the previously created objects.
- * Passing -1 as reference is an object.*/
- hobj_ref_t or_data[2]; /* write buffer */
- herr_t ret = SUCCEED;
-
- /*--------------
- * add dataset */
- sid = H5Screate_simple(1, dims1, NULL);
- if (sid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- oid = H5Dcreate2 (loc_id, OBJ_REF_DS, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (oid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- status = H5Dwrite(oid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- H5Dclose(oid);
- H5Sclose(sid);
-
- /*--------------
- * add group */
- oid = H5Gcreate2 (loc_id, OBJ_REF_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (oid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- H5Gclose(oid);
-
- status = H5Rcreate (&or_data[0], loc_id, OBJ_REF_DS, H5R_OBJECT, -1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- status = H5Rcreate (&or_data[1], loc_id, OBJ_REF_GRP, H5R_OBJECT, -1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- sid = H5Screate_simple (1, dims2, NULL);
- if (sid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
- if (oid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, or_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if(oid > 0)
- H5Dclose(oid);
- if(sid > 0)
- H5Sclose(sid);
-
- return ret;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gen_region_ref
- *
- * Purpose: Generate dataset region references
- *
- * Programmer: Jonathan Kim (Feb 23, 2010)
- *------------------------------------------------------------------------*/
-static herr_t gen_region_ref(hid_t loc_id)
-{
- hid_t sid=0, oid1=0, oid2=0;
- int status;
- herr_t ret = SUCCEED;
- char data[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"};
- hsize_t dims2[2] = {3,16};
- hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} };
- hdset_reg_ref_t rr_data[2];
- hsize_t start[2] = {0,0};
- hsize_t stride[2] = {2,11};
- hsize_t count[2] = {2,2};
- hsize_t block[2] = {1,3};
- hsize_t dims1[1] = {2};
-
- sid = H5Screate_simple (2, dims2, NULL);
- if (sid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create normal dataset which is refered */
- oid2 = H5Dcreate2 (loc_id, REG_REF_DS2, H5T_STD_I8LE, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
- if (oid2 < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* write values to dataset */
- status = H5Dwrite (oid2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* select elements space for reference */
- status = H5Sselect_elements (sid, H5S_SELECT_SET, 4, coords[0]);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create region reference from elements space */
- status = H5Rcreate (&rr_data[0], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* select hyperslab space for reference */
- status = H5Sselect_hyperslab (sid, H5S_SELECT_SET, start, stride, count, block);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create region reference from hyperslab space */
- status = H5Rcreate (&rr_data[1], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- H5Sclose (sid);
-
- /* Create dataspace. */
- sid = H5Screate_simple (1, dims1, NULL);
- if (sid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create region reference dataset */
- oid1 = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
- if (oid1 < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* write data as region references */
- status = H5Dwrite (oid1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if (oid1 > 0)
- H5Dclose (oid1);
- if (oid2 > 0)
- H5Dclose (oid2);
- if (sid > 0)
- H5Sclose (sid);
-
- return ret;
-}
-
-/*-------------------------------------------------------------------------
- * Function: Test_Obj_Copy
- *
- * Purpose: Testing with various objects
- *
- *------------------------------------------------------------------------*/
-static void Test_Obj_Copy()
-{
- hid_t fid=0;
-
- /* Create source file */
- fid = H5Fcreate(HDF_FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
- if (fid < 0)
- {
- fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_FILE1);
- goto out;
- }
-
- gent_datasets(fid);
- gent_empty_group(fid);
- gent_nested_datasets(fid);
- gent_nested_group(fid);
-
-out:
- /*-----------------------------------------------------------------------
- * Close
- *------------------------------------------------------------------------*/
- if(fid > 0)
- H5Fclose(fid);
-}
-
-/*-------------------------------------------------------------------------
- * Function: Test_Ref_Copy
- *
- * Purpose: Testing with various references
- *
- *------------------------------------------------------------------------*/
-static void Test_Ref_Copy()
-{
- hid_t fid=0;
- herr_t status;
-
- fid = H5Fcreate (HDF_FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
- if (fid < 0)
- {
- fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_FILE2);
- goto out;
- }
-
- /* add object reference */
- status = gen_obj_ref(fid);
- if (status < 0)
- fprintf(stderr, "Failed to generate object reference.\n");
-
- /* add region reference */
- status = gen_region_ref(fid);
- if (status < 0)
- fprintf(stderr, "Failed to generate region reference.\n");
-
-out:
- /*-----------------------------------------------------------------------
- * Close
- *------------------------------------------------------------------------*/
- if(fid > 0)
- H5Fclose(fid);
-}
-
-/*-------------------------------------------------------------------------
- * Function: gen_extlink_trg
- *
- * Purpose: generate target external link objs
- *
- * Programmer: Jonathan Kim (March 03, 2010)
- *------------------------------------------------------------------------*/
-static herr_t gen_extlink_trg(hid_t loc_id)
-{
- hid_t gid=0, tid=0;
- int status;
- herr_t ret = SUCCEED;
-
- /*-----------------------------------------------------------------------
- * Groups
- *------------------------------------------------------------------------*/
- /*--------------
- * target file */
- gid = H5Gcreate2(loc_id, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (gid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*--------------
- * add dataset */
- gent_simple(loc_id);
-
- /*--------------------
- * add named datatype
- */
- tid = H5Tcopy(H5T_NATIVE_INT);
- status = H5Tcommit2(loc_id, "datatype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if(gid > 0)
- H5Gclose(gid);
- if(tid > 0)
- H5Tclose(tid);
-
- return ret;
-}
-
-/*-------------------------------------------------------------------------
- * Function: gen_extlink_src
- *
- * Purpose: generate source external link objs
- *
- * Programmer: Jonathan Kim (March 03, 2010)
- *------------------------------------------------------------------------*/
-static herr_t gen_extlink_src(hid_t loc_id)
-{
- hid_t gid=0;
- int status;
- herr_t ret = SUCCEED;
-
- /*-----------------------------------------------------------------------
- * Groups
- *------------------------------------------------------------------------*/
- gid = H5Gcreate2(loc_id, "/group_ext", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (gid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*-----------------------------------------------------------------------
- * External links
- *------------------------------------------------------------------------*/
- /* link to dataset */
- status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/simple", gid, "extlink_dset", H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* link to group */
- status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/group", gid, "extlink_grp", H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* link to datatype */
- status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/datatype", gid, "extlink_datatype", H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* dangling link - no obj*/
- status = H5Lcreate_external(HDF_EXT_TRG_FILE, "notyet", gid, "extlink_notyet1", H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* dangling link - no file */
- status = H5Lcreate_external("notyet_file.h5", "notyet", gid, "extlink_notyet2", H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if(gid > 0)
- H5Gclose(gid);
-
- return ret;
-}
-
-/*-------------------------------------------------------------------------
- * Function: Test_Extlink_Copy
- *
- * Purpose: gerenate external link files
- *
- *------------------------------------------------------------------------*/
-static void Test_Extlink_Copy()
-{
- hid_t fid1=0;
- hid_t fid2=0;
- herr_t status;
-
- fid1 = H5Fcreate (HDF_EXT_SRC_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
- if (fid1 < 0)
- {
- fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_EXT_SRC_FILE);
- goto out;
- }
-
- fid2 = H5Fcreate (HDF_EXT_TRG_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
- if (fid2 < 0)
- {
- fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_EXT_TRG_FILE);
- goto out;
- }
-
- /* add links to source external link file */
- status = gen_extlink_src(fid1);
- if (status < 0)
- fprintf(stderr, "Error: %s> gen_extlink_src failed.\n", HDF_EXT_SRC_FILE);
-
- /* add objs to target external link file */
- status = gen_extlink_trg(fid2);
- if (status < 0)
- fprintf(stderr, "Error: %s> gen_extlink_trg failed.\n", HDF_EXT_TRG_FILE);
-
-out:
- /*-----------------------------------------------------------------------
- * Close
- *------------------------------------------------------------------------*/
- if(fid1 > 0)
- H5Fclose(fid1);
- if(fid2 > 0)
- H5Fclose(fid2);
-}
-
-/*-------------------------------------------------------------------------
- * Function: main
- *
- *-------------------------------------------------------------------------
- */
-
-int main(void)
-{
- Test_Obj_Copy();
- Test_Ref_Copy();
- Test_Extlink_Copy();
-
- return 0;
-}
-
diff --git a/tools/h5copy/testfiles/h5copy_extlinks_src.h5 b/tools/h5copy/testfiles/h5copy_extlinks_src.h5
deleted file mode 100644
index 7b8621e..0000000
--- a/tools/h5copy/testfiles/h5copy_extlinks_src.h5
+++ /dev/null
Binary files differ
diff --git a/tools/h5copy/testfiles/h5copy_extlinks_src.out.ls b/tools/h5copy/testfiles/h5copy_extlinks_src.out.ls
deleted file mode 100644
index 0134714..0000000
--- a/tools/h5copy/testfiles/h5copy_extlinks_src.out.ls
+++ /dev/null
@@ -1,43 +0,0 @@
-Opened "./testfiles/h5copy_extlinks_src.out.h5" with sec2 driver.
-/ Group
- Location: 1:96
- Links: 1
-/copy1_dset Dataset {6/6}
- Location: 1:800
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/copy1_group Group
- Location: 1:4696
- Links: 1
-/copy1_group/extlink_datatype External Link {h5copy_extlinks_trg.h5//datatype}
-/copy1_group/extlink_dset External Link {h5copy_extlinks_trg.h5//simple}
-/copy1_group/extlink_grp External Link {h5copy_extlinks_trg.h5//group}
-/copy1_group/extlink_notyet1 External Link {h5copy_extlinks_trg.h5//notyet}
-/copy1_group/extlink_notyet2 External Link {notyet_file.h5//notyet}
-/copy2_dset Dataset {6/6}
- Location: 1:4216
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/copy2_group Group
- Location: 1:5128
- Links: 1
-/copy2_group/extlink_datatype Type
- Location: 1:6328
- Links: 1
- Type: shared-1:6328 32-bit little-endian integer
-/copy2_group/extlink_dset Dataset {6/6}
- Location: 1:5496
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/copy2_group/extlink_grp Group
- Location: 1:6288
- Links: 1
-/copy2_group/extlink_notyet1 External Link {h5copy_extlinks_trg.h5//notyet}
-/copy2_group/extlink_notyet2 External Link {notyet_file.h5//notyet}
-/copy_dangle1_1 External Link {h5copy_extlinks_trg.h5//notyet}
-/copy_dangle1_2 External Link {h5copy_extlinks_trg.h5//notyet}
-/copy_dangle2_1 External Link {notyet_file.h5//notyet}
-/copy_dangle2_2 External Link {notyet_file.h5//notyet}
diff --git a/tools/h5copy/testfiles/h5copy_extlinks_trg.h5 b/tools/h5copy/testfiles/h5copy_extlinks_trg.h5
deleted file mode 100644
index 3a0242d..0000000
--- a/tools/h5copy/testfiles/h5copy_extlinks_trg.h5
+++ /dev/null
Binary files differ
diff --git a/tools/h5copy/testfiles/h5copy_misc1.out b/tools/h5copy/testfiles/h5copy_misc1.out
deleted file mode 100644
index 10dd1a6..0000000
--- a/tools/h5copy/testfiles/h5copy_misc1.out
+++ /dev/null
@@ -1,3 +0,0 @@
-Copying file <./testfiles/h5copytst.h5> and object </simple> to file <./testfiles/h5copytst.out.h5> and object </g1/g2/simple>
-Error in copy...Exiting
-h5copy error: group </g1> doesn't exist. Use -p to create parent groups.
diff --git a/tools/h5copy/testfiles/h5copy_ref.h5 b/tools/h5copy/testfiles/h5copy_ref.h5
deleted file mode 100644
index bd727e6..0000000
--- a/tools/h5copy/testfiles/h5copy_ref.h5
+++ /dev/null
Binary files differ
diff --git a/tools/h5copy/testfiles/h5copy_ref.out.ls b/tools/h5copy/testfiles/h5copy_ref.out.ls
deleted file mode 100644
index 0769dc8..0000000
--- a/tools/h5copy/testfiles/h5copy_ref.out.ls
+++ /dev/null
@@ -1,31 +0,0 @@
-Opened "./testfiles/h5copy_ref.out.h5" with sec2 driver.
-/ Group
- Location: 1:96
- Links: 1
-/COPY Group
- Location: 1:1464
- Links: 1
-/COPY/Dset1 Dataset {3/3}
- Location: 1:1504
- Links: 2
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/COPY/Dset2 Dataset {3/3, 16/16}
- Location: 1:1960
- Links: 3
- Storage: <details removed for portability>
- Type: 8-bit integer
-/COPY/Dset_OBJREF Dataset {2/2}
- Location: 1:5184
- Links: 1
- Storage: <details removed for portability>
- Type: object reference
-/COPY/Dset_REGREF Dataset {2/2}
- Location: 1:9400
- Links: 1
- Storage: <details removed for portability>
- Type: dataset region reference
-/COPY/Group Group
- Location: 1:2096
- Links: 3
-/~obj_pointed_by_2096 Group, same as /COPY/Group
diff --git a/tools/h5copy/testfiles/h5copytst.h5 b/tools/h5copy/testfiles/h5copytst.h5
deleted file mode 100644
index f407f82..0000000
--- a/tools/h5copy/testfiles/h5copytst.h5
+++ /dev/null
Binary files differ
diff --git a/tools/h5copy/testfiles/h5copytst.out.ls b/tools/h5copy/testfiles/h5copytst.out.ls
deleted file mode 100644
index 62c860b..0000000
--- a/tools/h5copy/testfiles/h5copytst.out.ls
+++ /dev/null
@@ -1,429 +0,0 @@
-Opened "./testfiles/h5copytst.out.h5" with sec2 driver.
-/ Group
- Location: 1:96
- Links: 1
-/A Group
- Location: 1:88336
- Links: 1
-/A/B1 Group
- Location: 1:89040
- Links: 1
-/A/B1/simple Dataset {6/6}
- Location: 1:88208
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/A/B2 Group
- Location: 1:92576
- Links: 1
-/A/B2/simple2 Dataset {6/6}
- Location: 1:92448
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/C Group
- Location: 1:95784
- Links: 1
-/C/D Group
- Location: 1:96488
- Links: 1
-/C/D/simple Dataset {6/6}
- Location: 1:95656
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/E Group
- Location: 1:110400
- Links: 1
-/E/F Group
- Location: 1:111104
- Links: 1
-/E/F/grp_dsets Group
- Location: 1:98600
- Links: 1
-/E/F/grp_dsets/chunk Dataset {6/6}
- Location: 1:102784
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/E/F/grp_dsets/compact Dataset {6/6}
- Location: 1:103240
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/E/F/grp_dsets/compound Dataset {2/2}
- Location: 1:103376
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/E/F/grp_dsets/compressed Dataset {6/6}
- Location: 1:105688
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Filter-0: deflate-1 OPT {1}
- Type: 32-bit little-endian integer
-/E/F/grp_dsets/named_vl Dataset {2/2}
- Location: 1:109952
- Links: 1
- Storage: <details removed for portability>
- Type: shared-1:110080 variable length of
- 32-bit little-endian integer
-/E/F/grp_dsets/nested_vl Dataset {2/2}
- Location: 1:110128
- Links: 1
- Storage: <details removed for portability>
- Type: variable length of
- variable length of
- 32-bit little-endian integer
-/E/F/grp_dsets/simple Dataset {6/6}
- Location: 1:110272
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/E/F/grp_dsets/vl Type
- Location: 1:110080
- Links: 2
- Type: shared-1:110080 variable length of
- 32-bit little-endian integer
-/G Group
- Location: 1:126048
- Links: 1
-/G/H Group
- Location: 1:126752
- Links: 1
-/G/H/grp_nested Group
- Location: 1:113128
- Links: 1
-/G/H/grp_nested/grp_dsets Group
- Location: 1:113920
- Links: 1
-/G/H/grp_nested/grp_dsets/chunk Dataset {6/6}
- Location: 1:118104
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/G/H/grp_nested/grp_dsets/compact Dataset {6/6}
- Location: 1:118560
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/G/H/grp_nested/grp_dsets/compound Dataset {2/2}
- Location: 1:118696
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/G/H/grp_nested/grp_dsets/compressed Dataset {6/6}
- Location: 1:121008
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Filter-0: deflate-1 OPT {1}
- Type: 32-bit little-endian integer
-/G/H/grp_nested/grp_dsets/named_vl Dataset {2/2}
- Location: 1:125272
- Links: 1
- Storage: <details removed for portability>
- Type: shared-1:125400 variable length of
- 32-bit little-endian integer
-/G/H/grp_nested/grp_dsets/nested_vl Dataset {2/2}
- Location: 1:125448
- Links: 1
- Storage: <details removed for portability>
- Type: variable length of
- variable length of
- 32-bit little-endian integer
-/G/H/grp_nested/grp_dsets/simple Dataset {6/6}
- Location: 1:125592
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/G/H/grp_nested/grp_dsets/vl Type
- Location: 1:125400
- Links: 2
- Type: shared-1:125400 variable length of
- 32-bit little-endian integer
-/chunk Dataset {6/6}
- Location: 1:6312
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/compact Dataset {6/6}
- Location: 1:6440
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/compound Dataset {2/2}
- Location: 1:8624
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/compressed Dataset {6/6}
- Location: 1:12984
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Filter-0: deflate-1 OPT {1}
- Type: 32-bit little-endian integer
-/grp_dsets Group
- Location: 1:32160
- Links: 1
-/grp_dsets/chunk Dataset {6/6}
- Location: 1:36344
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_dsets/compact Dataset {6/6}
- Location: 1:36800
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_dsets/compound Dataset {2/2}
- Location: 1:36936
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/grp_dsets/compressed Dataset {6/6}
- Location: 1:39248
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Filter-0: deflate-1 OPT {1}
- Type: 32-bit little-endian integer
-/grp_dsets/named_vl Dataset {2/2}
- Location: 1:43512
- Links: 1
- Storage: <details removed for portability>
- Type: shared-1:43640 variable length of
- 32-bit little-endian integer
-/grp_dsets/nested_vl Dataset {2/2}
- Location: 1:43688
- Links: 1
- Storage: <details removed for portability>
- Type: variable length of
- variable length of
- 32-bit little-endian integer
-/grp_dsets/simple Dataset {6/6}
- Location: 1:43832
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_dsets/simple_group Dataset {6/6}
- Location: 1:59944
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_dsets/vl Type
- Location: 1:43640
- Links: 2
- Type: shared-1:43640 variable length of
- 32-bit little-endian integer
-/grp_empty Group
- Location: 1:31368
- Links: 1
-/grp_nested Group
- Location: 1:44624
- Links: 1
-/grp_nested/grp_dsets Group
- Location: 1:45416
- Links: 1
-/grp_nested/grp_dsets/chunk Dataset {6/6}
- Location: 1:49600
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_nested/grp_dsets/compact Dataset {6/6}
- Location: 1:50056
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_nested/grp_dsets/compound Dataset {2/2}
- Location: 1:50192
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/grp_nested/grp_dsets/compressed Dataset {6/6}
- Location: 1:52504
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Filter-0: deflate-1 OPT {1}
- Type: 32-bit little-endian integer
-/grp_nested/grp_dsets/named_vl Dataset {2/2}
- Location: 1:56768
- Links: 1
- Storage: <details removed for portability>
- Type: shared-1:56896 variable length of
- 32-bit little-endian integer
-/grp_nested/grp_dsets/nested_vl Dataset {2/2}
- Location: 1:56944
- Links: 1
- Storage: <details removed for portability>
- Type: variable length of
- variable length of
- 32-bit little-endian integer
-/grp_nested/grp_dsets/simple Dataset {6/6}
- Location: 1:57088
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_nested/grp_dsets/vl Type
- Location: 1:56896
- Links: 2
- Type: shared-1:56896 variable length of
- 32-bit little-endian integer
-/grp_rename Group
- Location: 1:61152
- Links: 1
-/grp_rename/chunk Dataset {6/6}
- Location: 1:65336
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_rename/compact Dataset {6/6}
- Location: 1:65792
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_rename/compound Dataset {2/2}
- Location: 1:65928
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/grp_rename/compressed Dataset {6/6}
- Location: 1:68240
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Filter-0: deflate-1 OPT {1}
- Type: 32-bit little-endian integer
-/grp_rename/grp_dsets Group
- Location: 1:74032
- Links: 1
-/grp_rename/grp_dsets/chunk Dataset {6/6}
- Location: 1:78216
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_rename/grp_dsets/compact Dataset {6/6}
- Location: 1:78672
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_rename/grp_dsets/compound Dataset {2/2}
- Location: 1:78808
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/grp_rename/grp_dsets/compressed Dataset {6/6}
- Location: 1:81120
- Links: 1
- Chunks: {2} 8 bytes
- Storage: <details removed for portability>
- Filter-0: deflate-1 OPT {1}
- Type: 32-bit little-endian integer
-/grp_rename/grp_dsets/named_vl Dataset {2/2}
- Location: 1:85384
- Links: 1
- Storage: <details removed for portability>
- Type: shared-1:85512 variable length of
- 32-bit little-endian integer
-/grp_rename/grp_dsets/nested_vl Dataset {2/2}
- Location: 1:85560
- Links: 1
- Storage: <details removed for portability>
- Type: variable length of
- variable length of
- 32-bit little-endian integer
-/grp_rename/grp_dsets/simple Dataset {6/6}
- Location: 1:85704
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_rename/grp_dsets/vl Type
- Location: 1:85512
- Links: 2
- Type: shared-1:85512 variable length of
- 32-bit little-endian integer
-/grp_rename/named_vl Dataset {2/2}
- Location: 1:72504
- Links: 1
- Storage: <details removed for portability>
- Type: shared-1:72632 variable length of
- 32-bit little-endian integer
-/grp_rename/nested_vl Dataset {2/2}
- Location: 1:72680
- Links: 1
- Storage: <details removed for portability>
- Type: variable length of
- variable length of
- 32-bit little-endian integer
-/grp_rename/simple Dataset {6/6}
- Location: 1:72824
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/grp_rename/vl Type
- Location: 1:72632
- Links: 2
- Type: shared-1:72632 variable length of
- 32-bit little-endian integer
-/named_vl Dataset {2/2}
- Location: 1:19296
- Links: 1
- Storage: <details removed for portability>
- Type: shared-1:19424 variable length of
- 32-bit little-endian integer
-/nested_vl Dataset {2/2}
- Location: 1:25792
- Links: 1
- Storage: <details removed for portability>
- Type: variable length of
- variable length of
- 32-bit little-endian integer
-/rename Dataset {2/2}
- Location: 1:30160
- Links: 1
- Storage: <details removed for portability>
- Type: struct {
- "str1" +0 20-byte null-terminated ASCII string
- "str2" +20 20-byte null-terminated ASCII string
- } 40 bytes
-/simple Dataset {6/6}
- Location: 1:800
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
-/simple_top Dataset {6/6}
- Location: 1:27984
- Links: 1
- Storage: <details removed for portability>
- Type: 32-bit little-endian integer
diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh
deleted file mode 100644
index 0529d53..0000000
--- a/tools/h5copy/testh5copy.sh
+++ /dev/null
@@ -1,548 +0,0 @@
-#! /bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-#
-# Tests for the h5copy tool
-#
-# Pedro Vicente Nunes (pvn@hdfgroup.org), Albert Cheng (acheng@hdfgroup.org)
-# Thursday, July 20, 2006
-#
-
-# The build (current) directory might be different than the source directory.
-if test -z "$srcdir"; then
- srcdir=.
-fi
-
-# source dirs
-SRC_TOOLS="$srcdir/.."
-SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
-# testfiles source dirs for tools
-SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
-SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
-SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
-SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
-SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
-SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
-SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
-SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
-
-TESTNAME=h5copy
-EXIT_SUCCESS=0
-EXIT_FAILURE=1
-
-######################################################################
-# test files
-# --------------------------------------------------------------------
-# All the test files copy from source directory to test directory
-# NOTE: Keep this framework to add/remove test files.
-# Any test files from other tools can be used in this framework.
-# This list are also used for checking exist.
-# Comment '#' without space can be used.
-# --------------------------------------------------------------------
-# List of files that will be copied over to local test dir
-LIST_HDF5_TEST_FILES="
-$SRC_H5COPY_TESTFILES/h5copytst.h5
-$SRC_H5COPY_TESTFILES/h5copy_ref.h5
-$SRC_H5COPY_TESTFILES/h5copy_extlinks_src.h5
-$SRC_H5COPY_TESTFILES/h5copy_extlinks_trg.h5
-"
-
-# List of expect files that will be copied over to local test dir
-LIST_OTHER_TEST_FILES="
-$SRC_H5COPY_TESTFILES/h5copy_extlinks_src.out.ls
-$SRC_H5COPY_TESTFILES/h5copy_ref.out.ls
-$SRC_H5COPY_TESTFILES/h5copytst.out.ls
-$SRC_H5COPY_TESTFILES/h5copy_misc1.out
-"
-
-H5COPY=h5copy # The tool name
-H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary
-H5DIFF=h5diff # The h5diff tool name
-H5DIFF_BIN=`pwd`/../h5diff/$H5DIFF # The path of the h5diff tool binary
-H5LS=h5ls # The h5ls tool name
-H5LS_ARGS=-Svr # Arguments to the h5ls tool
-H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary
-CMP='cmp -s'
-DIFF='diff -c'
-CP='cp'
-
-nerrors=0
-verbose=yes
-h5haveexitcode=yes # default is yes
-
-TESTDIR=./testfiles
-test -d $TESTDIR || mkdir $TESTDIR
-
-# RUNSERIAL is used. Check if it can return exit code from executalbe correctly.
-if [ -n "$RUNSERIAL_NOEXITCODE" ]; then
- echo "***Warning*** Serial Exit Code is not passed back to shell corretly."
- echo "***Warning*** Exit code checking is skipped."
- h5haveexitcode=no
-fi
-
-#
-# copy test files and expected output files from source dirs to test dir
-#
-COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
-
-COPY_TESTFILES_TO_TESTDIR()
-{
- # copy test files. Used -f to make sure get a new copy
- for tstfile in $COPY_TESTFILES
- do
- # ignore '#' comment
- echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
- RET=$?
- if [ $RET -eq 1 ]; then
- if [ -a $tstfile ]; then
- $CP -f $tstfile $TESTDIR
- else
- echo "Error: FAILED to copy $tstfile."
- echo " $tstfile doesn't exist!"
- exit $EXIT_FAILURE
- fi
- fi
- done
-}
-
-# Print a "SKIP" message
-SKIP() {
- TESTING $H5COPY $@
- echo " -SKIP-"
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Testing".
-TESTING()
-{
- SPACES=" "
- echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Verifying".
-#
-VERIFY()
-{
- SPACES=" "
- echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Verifying".
-#
-VERIFY_H5LS()
-{
- SPACES=" "
- echo "Verifying h5ls file structure $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Verifying".
-#
-VERIFY_OUTPUT()
-{
- SPACES=" "
- echo "Verifying output files $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Source in the output filter function definitions.
-. $srcdir/../../bin/output_filter.sh
-
-# Run a test and print PASS or *FAIL*. If h5copy can complete
-# with exit status 0, consider it pass. If a test fails then increment
-# the `nerrors' global variable.
-# Assumed arguments:
-# $1 is -i
-# $2 is input file
-# $3 is -o
-# $4 is output file
-# $* everything else arguments for h5copy.
-
-TOOLTEST()
-{
- actualout="$TESTDIR/tooltest.actualout"
- actualerr="$TESTDIR/tooltest.actualerr"
- runh5diff=yes
- if [ "$1" = -i ]; then
- inputfile=$2
- else
- runh5diff=no
- fi
- if [ "$3" = -o ]; then
- outputfile=$4
- else
- runh5diff=no
- fi
-
- TESTING $H5COPY $@
- (
- echo "#############################"
- echo " output for '$H5COPY $@'"
- echo "#############################"
- $RUNSERIAL $H5COPY_BIN $@
- ) > $actualout 2> $actualerr
- RET=$?
- if [ $RET != 0 ]; then
- echo "*FAILED*"
- echo "failed result is:"
- cat $actualout
- nerrors="`expr $nerrors + 1`"
- else
- echo " PASSED"
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actualout $actualerr
- fi
- fi
-
- if [ $runh5diff != no ]; then
- H5DIFFTEST $inputfile $outputfile $7 $9
- fi
-}
-
-
-# Compare the two text files
-# PASS if same
-# FAIL if different, and show the diff
-#
-# Assumed arguments:
-# $1 is text file1 (expected output)
-# $2 is text file2 (actual output)
-CMP_OUTPUT()
-{
- expect=$1
- actual=$2
-
- VERIFY_OUTPUT $@
- if [ ! -f $expect ]; then
- # Create the expect file if it doesn't yet exist.
- echo " CREATED"
- cp $actual $expect
- elif $CMP $expect $actual; then
- echo " PASSED"
- else
- echo "*FAILED*"
- echo " Expected output differs from actual output"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
- fi
-}
-
-TOOLTEST_FAIL()
-{
- expectout="$TESTDIR/$1"
- actualout="$TESTDIR/$1.actualout"
- actualerr="$TESTDIR/$1.actualerr"
- actualout_sav=${actualout}-sav
- actualerr_sav=${actualerr}-sav
- shift
- if [ "$1" = -i ]; then
- inputfile=$2
- fi
- if [ "$3" = -o ]; then
- outputfile=$4
- fi
-
- TESTING $H5COPY $@
- (
- #echo "#############################"
- #echo " output for '$H5COPY $@'"
- #echo "#############################"
- $RUNSERIAL $H5COPY_BIN $@
- ) > $actualout 2> $actualerr
-
- RET=$?
- # save actualout and actualerr in case they are needed later.
- cp $actualout $actualout_sav
- STDOUT_FILTER $actualout
- cp $actualerr $actualerr_sav
- STDERR_FILTER $actualerr
- if [ $RET != 0 ]; then
- echo " PASSED"
- # Verifying output text from h5copy
- if [ "$expectout" != "SKIP" ]; then
- # combine stderr to stdout to compare the output at once.
- # We may seperate stdout and stderr later.
- cat $actualerr >> $actualout
- CMP_OUTPUT $expectout $actualout
- fi
- else
- echo "*FAILED*"
- echo "failed result is:"
- cat $actualout
- nerrors="`expr $nerrors + 1`"
- fi
-
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actualout $actualerr $actualout_sav $actualerr_sav
- fi
-}
-
-
-# Call the h5diff tool
-#
-H5DIFFTEST()
-{
- VERIFY $@
- $RUNSERIAL $H5DIFF_BIN -q "$@"
- RET=$?
- if [ $RET != 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
- else
- echo " PASSED"
- fi
-}
-
-# Call the h5diff tool with a call that is expected to fail
-#
-H5DIFFTEST_FAIL()
-{
- VERIFY $@
- $RUNSERIAL $H5DIFF_BIN -q "$@"
- RET=$?
-
- if [ $h5haveexitcode = 'yes' -a $RET != 1 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
- else
- echo " PASSED"
- fi
-}
-
-# Call the h5ls tool to verify the correct output data in the destination file
-#
-H5LSTEST()
-{
- expect="$TESTDIR/`basename $1 .h5`.ls"
- actual="$TESTDIR/`basename $1 .h5`.ls.actualout"
-
- # Stderr is included in stdout so that the diff can detect
- # any unexpected output from that stream too.
- #
- # Note: The modification time and storage utilization are masked off
- # so that the output is more portable
- VERIFY_H5LS $@
- (
- $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
- ) 2>&1 |sed 's/Modified:.*/Modified: XXXX-XX-XX XX:XX:XX XXX/' |sed 's/Storage:.*/Storage: <details removed for portability>/' >$actual
-
-
- if [ ! -f $expect ]; then
- # Create the expect file if it doesn't yet exist.
- echo " CREATED"
- cp $actual $expect
- elif $CMP $expect $actual; then
- echo " PASSED"
- else
- echo "*FAILED*"
- echo " Expected result (*.ls) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
- fi
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err
- fi
-}
-
-# Copy single datasets of various forms from one group to another,
-# adding object copied to the destination file each time
-#
-# Assumed arguments:
-# <none>
-COPY_OBJECTS()
-{
- TESTFILE="$TESTDIR/h5copytst.h5"
- FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5"
-
- # Remove any output file left over from previous test run
- rm -f $FILEOUT
-
- echo "Testing from `basename $TESTFILE` to `basename $FILEOUT` for the following tests:"
- echo "Test copying various forms of datasets"
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s simple -d simple
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s chunk -d chunk
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compact -d compact
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound -d compound
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compressed -d compressed
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s named_vl -d named_vl
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s nested_vl -d nested_vl
-
- echo "Test copying dataset within group in source file to root of destination"
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets/simple -d simple_top
-
- echo "Test copying & renaming dataset"
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound -d rename
-
- echo "Test copying empty, 'full' & 'nested' groups"
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_empty -d grp_empty
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_dsets
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_nested -d grp_nested
-
- echo "Test copying dataset within group in source file to group in destination"
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets/simple -d /grp_dsets/simple_group
-
- echo "Test copying & renaming group"
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_rename
-
- echo "Test copying 'full' group hierarchy into group in destination file"
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d /grp_rename/grp_dsets
-
- echo "Test copying objects into group hier. that doesn't exist yet in destination file"
- TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple -d /A/B1/simple
- TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple -d /A/B2/simple2
- TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets/simple -d /C/D/simple
- TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets
- TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested
-
- # Verify that the file created above is correct
- H5LSTEST $FILEOUT
-
- # Remove output file created, if the "no cleanup" environment variable is
- # not defined
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $FILEOUT
- fi
-}
-
-# Copy references in various way.
-# adding to the destination file each time compare the result
-#
-# Assumed arguments:
-# <none>
-COPY_REFERENCES()
-{
- TESTFILE="$TESTDIR/h5copy_ref.h5"
- FILEOUT="$TESTDIR/`basename h5copy_ref.h5 .h5`.out.h5"
-
- # Remove any output file left over from previous test run
- rm -f $FILEOUT
-
- echo "Test copying object and region references"
- TOOLTEST -f ref -i $TESTFILE -o $FILEOUT -v -s / -d /COPY
-
- # Verify that the file created above is correct
- H5LSTEST $FILEOUT
-
- # Remove output file created, if the "no cleanup" environment variable is
- # not defined
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $FILEOUT
- fi
-}
-
-# Copy external links.
-# adding to the destination file each time compare the result
-#
-# Assumed arguments:
-# <none>
-COPY_EXT_LINKS()
-{
- TESTFILE="$TESTDIR/h5copy_extlinks_src.h5"
- FILEOUT="$TESTDIR/`basename h5copy_extlinks_src.h5 .h5`.out.h5"
-
- # Remove any output file left over from previous test run
- rm -f $FILEOUT
-
- echo "Test copying external link directly without -f ext"
- TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_dset -d /copy1_dset
-
- echo "Test copying external link directly with -f ext"
- TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_dset -d /copy2_dset
-
- echo "Test copying dangling external link (no obj) directly without -f ext"
- TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet1 -d /copy_dangle1_1
-
- echo "Test copying dangling external link (no obj) directly with -f ext"
- TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2
-
- echo "Test copying dangling external link (no file) directly without -f ext"
- TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet2 -d /copy_dangle2_1
-
- echo "Test copying dangling external link (no file) directly with -f ext"
- TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2
-
- echo "Test copying a group contains external links without -f ext"
- TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy1_group
-
- echo "Test copying a group contains external links with -f ext"
- TOOLTEST -f ext -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy2_group
-
- # Verify that the file created above is correct
- H5LSTEST $FILEOUT
-
- # Remove output file created, if the "no cleanup" environment variable is
- # not defined
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $FILEOUT
- fi
-}
-
-# Test misc.
-#
-# Assumed arguments:
-# <none>
-TEST_MISC()
-{
- TESTFILE="$TESTDIR/h5copytst.h5"
- FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5"
-
- # Remove any output file left over from previous test run
- rm -f $FILEOUT
-
- echo "Test copying object into group which doesn't exist, without -p"
- TOOLTEST_FAIL h5copy_misc1.out -v -i $TESTFILE -o $FILEOUT -s /simple -d /g1/g2/simple
-
- echo "Test copying objects to the same file "
- rm -f $FILEOUT
- # create temporary test file ($FILEOUT) with some objects
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /simple -d /simple
- TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets -d /grp_dsets
- # actual test cases
- TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /simple -d /simple_cp
- TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /grp_dsets -d /grp_dsets_cp
-
- # Remove output file created, if the "no cleanup" environment variable is
- # not defined
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $FILEOUT
- fi
-}
-
-##############################################################################
-### T H E T E S T S ###
-##############################################################################
-# prepare for test
-COPY_TESTFILES_TO_TESTDIR
-
-# Start tests
-COPY_OBJECTS
-COPY_REFERENCES
-COPY_EXT_LINKS
-TEST_MISC
-
-
-if test $nerrors -eq 0 ; then
- echo "All $TESTNAME tests passed."
- exit $EXIT_SUCCESS
-else
- echo "$TESTNAME tests failed with $nerrors errors."
- exit $EXIT_FAILURE
-fi
generated by cgit v0.12 at 2025-12-10 04:52:55 (GMT)