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-rw-r--r--tools/h5copy/h5copy.c10
-rw-r--r--tools/h5copy/h5copygentest.c435
-rw-r--r--tools/h5copy/testh5copy.sh76
3 files changed, 289 insertions, 232 deletions
diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c
index 5ca21e5..9b4f629 100644
--- a/tools/h5copy/h5copy.c
+++ b/tools/h5copy/h5copy.c
@@ -272,7 +272,7 @@ main (int argc, const char *argv[])
* open input file
*-------------------------------------------------------------------------*/
- fid_src = h5tools_fopen(fname_src, NULL, NULL, 0);
+ fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, NULL, NULL, 0);
/*-------------------------------------------------------------------------
* test for error in opening input file
@@ -289,7 +289,13 @@ main (int argc, const char *argv[])
* open output file
*-------------------------------------------------------------------------*/
- fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ /* Attempt to open an existing HDF5 file first */
+ fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, NULL, NULL, 0);
+
+ /* If we couldn't open an existing file, try creating file */
+ /* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file */
+ if(fid_dst < 0)
+ fid_dst = H5Fcreate(fname_dst, H5F_ACC_EXCL, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* test for error in opening output file
diff --git a/tools/h5copy/h5copygentest.c b/tools/h5copy/h5copygentest.c
index 84ce931..79f43ef 100644
--- a/tools/h5copy/h5copygentest.c
+++ b/tools/h5copy/h5copygentest.c
@@ -34,276 +34,274 @@
/*-------------------------------------------------------------------------
* Function: gent_simple
*
- * Purpose: Generate a simple dataset in FID
+ * Purpose: Generate a simple dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
-static void gent_simple(hid_t fid)
+static void gent_simple(hid_t loc_id)
{
- hid_t sid, did;
- hsize_t dims[1] = {6};
- int buf[6] = {1,2,3,4,5,6};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create dataset */
- did = H5Dcreate(fid, DATASET_SIMPLE, H5T_NATIVE_INT, sid, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
+ hid_t sid, did;
+ hsize_t dims[1] = {6};
+ int buf[6] = {1,2,3,4,5,6};
+
+ /* create dataspace */
+ sid = H5Screate_simple(1, dims, NULL);
+
+ /* create dataset */
+ did = H5Dcreate(loc_id, DATASET_SIMPLE, H5T_NATIVE_INT, sid, H5P_DEFAULT);
+
+ /* write */
+ H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ /* close */
+ H5Sclose(sid);
+ H5Dclose(did);
}
/*-------------------------------------------------------------------------
* Function: gent_chunked
*
- * Purpose: Generate a chunked dataset in FID
+ * Purpose: Generate a chunked dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
-static void gent_chunked(hid_t fid)
+static void gent_chunked(hid_t loc_id)
{
- hid_t sid, did, pid;
- hsize_t dims[1] = {6};
- hsize_t chunk_dims[1] = {2};
- int buf[6] = {1,2,3,4,5,6};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create property plist */
- pid = H5Pcreate(H5P_DATASET_CREATE);
- H5Pset_chunk(pid, 1, chunk_dims);
-
- /* create dataset */
- did = H5Dcreate(fid, DATASET_CHUNK, H5T_NATIVE_INT, sid, pid);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Pclose(pid);
+ hid_t sid, did, pid;
+ hsize_t dims[1] = {6};
+ hsize_t chunk_dims[1] = {2};
+ int buf[6] = {1,2,3,4,5,6};
+
+ /* create dataspace */
+ sid = H5Screate_simple(1, dims, NULL);
+
+ /* create property plist */
+ pid = H5Pcreate(H5P_DATASET_CREATE);
+ H5Pset_chunk(pid, 1, chunk_dims);
+
+ /* create dataset */
+ did = H5Dcreate(loc_id, DATASET_CHUNK, H5T_NATIVE_INT, sid, pid);
+
+ /* write */
+ H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ /* close */
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Pclose(pid);
}
/*-------------------------------------------------------------------------
* Function: gent_compact
*
- * Purpose: Generate a compact dataset in FID
+ * Purpose: Generate a compact dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
-static void gent_compact(hid_t fid)
+static void gent_compact(hid_t loc_id)
{
- hid_t sid, did, pid;
- hsize_t dims[1] = {6};
- int buf[6] = {1,2,3,4,5,6};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create property plist */
- pid = H5Pcreate(H5P_DATASET_CREATE);
- H5Pset_layout (pid,H5D_COMPACT);
-
- /* create dataset */
- did = H5Dcreate(fid, DATASET_COMPACT, H5T_NATIVE_INT, sid, pid);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Pclose(pid);
+ hid_t sid, did, pid;
+ hsize_t dims[1] = {6};
+ int buf[6] = {1,2,3,4,5,6};
+
+ /* create dataspace */
+ sid = H5Screate_simple(1, dims, NULL);
+
+ /* create property plist */
+ pid = H5Pcreate(H5P_DATASET_CREATE);
+ H5Pset_layout (pid,H5D_COMPACT);
+
+ /* create dataset */
+ did = H5Dcreate(loc_id, DATASET_COMPACT, H5T_NATIVE_INT, sid, pid);
+
+ /* write */
+ H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ /* close */
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Pclose(pid);
}
/*-------------------------------------------------------------------------
* Function: gent_compound
*
- * Purpose: Generate a compound dataset in FID
+ * Purpose: Generate a compound dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
-static void gent_compound(hid_t fid)
+static void gent_compound(hid_t loc_id)
{
- typedef struct s_t
- {
- char str1[20];
- char str2[20];
- } s_t;
- hid_t sid, did, tid_c, tid_s;
- hsize_t dims[1] = {2};
- s_t buf[2] = {{"str1","str2"},{"str3","str4"}};
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create a compound type */
- tid_c = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
- tid_s = H5Tcopy (H5T_C_S1);
- H5Tset_size (tid_s, 20);
-
- H5Tinsert (tid_c, "str1", HOFFSET(s_t,str1), tid_s);
- H5Tinsert (tid_c, "str2", HOFFSET(s_t,str2), tid_s);
-
- /* create dataset */
- did = H5Dcreate(fid, DATASET_COMPOUND, tid_c, sid, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, tid_c, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Tclose(tid_c);
- H5Tclose(tid_s);
+ typedef struct s_t
+ {
+ char str1[20];
+ char str2[20];
+ } s_t;
+ hid_t sid, did, tid_c, tid_s;
+ hsize_t dims[1] = {2};
+ s_t buf[2] = {{"str1", "str2"}, {"str3", "str4"}};
+
+ /* create dataspace */
+ sid = H5Screate_simple(1, dims, NULL);
+
+ /* create a compound type */
+ tid_c = H5Tcreate(H5T_COMPOUND, sizeof(s_t));
+ tid_s = H5Tcopy(H5T_C_S1);
+ H5Tset_size(tid_s, 20);
+
+ H5Tinsert(tid_c, "str1", HOFFSET(s_t,str1), tid_s);
+ H5Tinsert(tid_c, "str2", HOFFSET(s_t,str2), tid_s);
+
+ /* create dataset */
+ did = H5Dcreate(loc_id, DATASET_COMPOUND, tid_c, sid, H5P_DEFAULT);
+
+ /* write */
+ H5Dwrite(did, tid_c, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ /* close */
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Tclose(tid_c);
+ H5Tclose(tid_s);
}
/*-------------------------------------------------------------------------
* Function: gent_compressed
*
- * Purpose: Generate a compressed dataset in FID
+ * Purpose: Generate a compressed dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
-static void gent_compressed(hid_t fid)
+static void gent_compressed(hid_t loc_id)
{
- hid_t sid, did, pid;
- hsize_t dims[1] = {6};
- hsize_t chunk_dims[1] = {2};
- int buf[6] = {1,2,3,4,5,6};
+ hid_t sid, did, pid;
+ hsize_t dims[1] = {6};
+ hsize_t chunk_dims[1] = {2};
+ int buf[6] = {1,2,3,4,5,6};
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
+ /* create dataspace */
+ sid = H5Screate_simple(1, dims, NULL);
- /* create property plist for chunk*/
- pid = H5Pcreate(H5P_DATASET_CREATE);
- H5Pset_chunk(pid, 1, chunk_dims);
+ /* create property plist for chunk*/
+ pid = H5Pcreate(H5P_DATASET_CREATE);
+ H5Pset_chunk(pid, 1, chunk_dims);
- /* set the deflate filter */
+ /* set the deflate filter */
#if defined (H5_HAVE_FILTER_DEFLATE)
- H5Pset_deflate(pid, 1);
+ H5Pset_deflate(pid, 1);
#endif
-
- /* create dataset */
- did = H5Dcreate(fid, DATASET_COMPRESSED, H5T_NATIVE_INT, sid, pid);
-
- /* write */
- H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Sclose(sid);
- H5Dclose(did);
- H5Pclose(pid);
+
+ /* create dataset */
+ did = H5Dcreate(loc_id, DATASET_COMPRESSED, H5T_NATIVE_INT, sid, pid);
+
+ /* write */
+ H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ /* close */
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Pclose(pid);
}
/*-------------------------------------------------------------------------
* Function: gent_named_vl
*
- * Purpose: Generate a variable lenght named datatype for a dataset in FID
+ * Purpose: Generate a variable lenght named datatype for a dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
-static void gent_named_vl(hid_t fid)
+static void gent_named_vl(hid_t loc_id)
{
- hid_t sid, did, tid;
- hsize_t dims[1] = {2};
- hvl_t buf[2];
-
- /* allocate and initialize VL dataset to write */
- buf[0].len = 1;
- buf[0].p = malloc( 1 * sizeof(int));
- ((int *)buf[0].p)[0]=1;
- buf[1].len = 2;
- buf[1].p = malloc( 2 * sizeof(int));
- ((int *)buf[1].p)[0]=2;
- ((int *)buf[1].p)[1]=3;
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create datatype */
- tid = H5Tvlen_create(H5T_NATIVE_INT);
-
- /* create named datatype */
- H5Tcommit(fid, "vl", tid);
-
- /* create dataset */
- did = H5Dcreate(fid, DATASET_NAMED_VL, tid, sid, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf);
- H5Sclose(sid);
- H5Dclose(did);
- H5Tclose(tid);
-
+ hid_t sid, did, tid;
+ hsize_t dims[1] = {2};
+ hvl_t buf[2];
+
+ /* allocate and initialize VL dataset to write */
+ buf[0].len = 1;
+ buf[0].p = malloc( 1 * sizeof(int));
+ ((int *)buf[0].p)[0]=1;
+ buf[1].len = 2;
+ buf[1].p = malloc( 2 * sizeof(int));
+ ((int *)buf[1].p)[0]=2;
+ ((int *)buf[1].p)[1]=3;
+
+ /* create dataspace */
+ sid = H5Screate_simple(1, dims, NULL);
+
+ /* create datatype */
+ tid = H5Tvlen_create(H5T_NATIVE_INT);
+
+ /* create named datatype */
+ H5Tcommit(loc_id, "vl", tid);
+
+ /* create dataset */
+ did = H5Dcreate(loc_id, DATASET_NAMED_VL, tid, sid, H5P_DEFAULT);
+
+ /* write */
+ H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ /* close */
+ H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf);
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Tclose(tid);
}
/*-------------------------------------------------------------------------
* Function: gent_nested_vl
*
- * Purpose: Generate a nested variable lenght dataset in FID
+ * Purpose: Generate a nested variable length dataset in LOC_ID
*
*-------------------------------------------------------------------------
*/
-static void gent_nested_vl(hid_t fid)
+static void gent_nested_vl(hid_t loc_id)
{
- hid_t sid, did, tid1, tid2;
- hsize_t dims[1] = {2};
- hvl_t buf[2];
- hvl_t *tvl;
-
- /* allocate and initialize VL dataset to write */
- buf[0].len = 1;
- buf[0].p = malloc( 1 * sizeof(hvl_t));
- tvl = buf[0].p;
- tvl->p = malloc( 1 * sizeof(int) );
- tvl->len = 1;
- ((int *)tvl->p)[0]=1;
-
- buf[1].len = 1;
- buf[1].p = malloc( 1 * sizeof(hvl_t));
- tvl = buf[1].p;
- tvl->p = malloc( 2 * sizeof(int) );
- tvl->len = 2;
- ((int *)tvl->p)[0]=2;
- ((int *)tvl->p)[1]=3;
-
- /* create dataspace */
- sid = H5Screate_simple(1, dims, NULL);
-
- /* create datatype */
- tid1 = H5Tvlen_create(H5T_NATIVE_INT);
-
- /* create nested VL datatype */
- tid2 = H5Tvlen_create(tid1);
-
- /* create dataset */
- did = H5Dcreate(fid, DATASET_NESTED_VL, tid2, sid, H5P_DEFAULT);
-
- /* write */
- H5Dwrite(did, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
-
- /* close */
- H5Dvlen_reclaim(tid2,sid,H5P_DEFAULT,buf);
- H5Sclose(sid);
- H5Dclose(did);
- H5Tclose(tid1);
- H5Tclose(tid2);
-
+ hid_t sid, did, tid1, tid2;
+ hsize_t dims[1] = {2};
+ hvl_t buf[2];
+ hvl_t *tvl;
+
+ /* allocate and initialize VL dataset to write */
+ buf[0].len = 1;
+ buf[0].p = malloc( 1 * sizeof(hvl_t));
+ tvl = buf[0].p;
+ tvl->p = malloc( 1 * sizeof(int) );
+ tvl->len = 1;
+ ((int *)tvl->p)[0]=1;
+
+ buf[1].len = 1;
+ buf[1].p = malloc( 1 * sizeof(hvl_t));
+ tvl = buf[1].p;
+ tvl->p = malloc( 2 * sizeof(int) );
+ tvl->len = 2;
+ ((int *)tvl->p)[0]=2;
+ ((int *)tvl->p)[1]=3;
+
+ /* create dataspace */
+ sid = H5Screate_simple(1, dims, NULL);
+
+ /* create datatype */
+ tid1 = H5Tvlen_create(H5T_NATIVE_INT);
+
+ /* create nested VL datatype */
+ tid2 = H5Tvlen_create(tid1);
+
+ /* create dataset */
+ did = H5Dcreate(loc_id, DATASET_NESTED_VL, tid2, sid, H5P_DEFAULT);
+
+ /* write */
+ H5Dwrite(did, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ /* close */
+ H5Dvlen_reclaim(tid2,sid,H5P_DEFAULT,buf);
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Tclose(tid1);
+ H5Tclose(tid2);
}
@@ -315,20 +313,21 @@ static void gent_nested_vl(hid_t fid)
int main(void)
{
- hid_t fid;
-
-
- fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
-
- gent_simple(fid);
- gent_chunked(fid);
- gent_compact(fid);
- gent_compound(fid);
- gent_compressed(fid);
- gent_named_vl(fid);
- gent_nested_vl(fid);
-
- H5Fclose(fid);
- return 0;
+ hid_t fid;
+
+ /* Create source file */
+ fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ gent_simple(fid);
+ gent_chunked(fid);
+ gent_compact(fid);
+ gent_compound(fid);
+ gent_compressed(fid);
+ gent_named_vl(fid);
+ gent_nested_vl(fid);
+ H5Fclose(fid);
+
+ /* Create destination file with all datasets in root group */
+
+ return 0;
}
diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh
index d363906..af8fb4b 100644
--- a/tools/h5copy/testh5copy.sh
+++ b/tools/h5copy/testh5copy.sh
@@ -21,13 +21,20 @@
H5COPY=h5copy # The tool name
H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary
-H5DIFF=../h5diff/h5diff # The h5diff tool name
-H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
+H5DIFF=h5diff # The h5diff tool name
+H5DIFF_BIN=`pwd`/../h5diff/$H5DIFF # The path of the h5diff tool binary
+H5LS=h5ls # The h5ls tool name
+H5LS_ARGS=-vr # Arguments to the h5ls tool
+H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary
TESTFILE=$srcdir/../testfiles/h5copytst.h5
FILEOUT=h5copytst.out.h5
nerrors=0
+verbose=yes
+
+CMP='cmp -s'
+DIFF='diff -c'
# The build (current) directory might be different than the source directory.
if test -z "$srcdir"; then
@@ -52,6 +59,15 @@ VERIFY()
echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
}
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Verifying".
+#
+VERIFY_H5LS()
+{
+ SPACES=" "
+ echo "Verifying h5diff file structure $* $SPACES" | cut -c1-70 | tr -d '\012'
+}
+
# Run a test and print PASS or *FAIL*. If h5copy can complete
# with exit status 0, consider it pass. If a test fails then increment
# the `nerrors' global variable.
@@ -84,13 +100,13 @@ TOOLTEST()
$RUNSERIAL $H5COPY_BIN $@
) > output.out
RET=$?
- if [ $RET != 0 ] ; then
- echo "*FAILED*"
- echo "failed result is:"
- cat output.out
- nerrors="`expr $nerrors + 1`"
+ if [ $RET != 0 ]; then
+ echo "*FAILED*"
+ echo "failed result is:"
+ cat output.out
+ nerrors="`expr $nerrors + 1`"
else
- echo " PASSED"
+ echo " PASSED"
fi
if [ $runh5diff != no ]; then
@@ -104,9 +120,9 @@ H5DIFFTEST()
{
VERIFY $@
if [ "`uname -s`" = "TFLOPS O/S" ]; then
- $RUNSERIAL $H5DIFF_BIN $@ -q
+ $RUNSERIAL $H5DIFF_BIN $@ -q
else
- $RUNSERIAL $H5DIFF_BIN "$@" -q
+ $RUNSERIAL $H5DIFF_BIN "$@" -q
fi
RET=$?
if [ $RET != 0 ] ; then
@@ -117,10 +133,45 @@ H5DIFFTEST()
fi
}
+# Call the h5ls tool to verify the correct output data in the destination file
+#
+H5LSTEST()
+{
+ expect="$srcdir/../testfiles/`basename $1 .h5`.ls"
+ actual="../testfiles/`basename $1 .h5`.out"
+ actual_err="../testfiles/`basename $1 .h5`.err"
+
+ VERIFY_H5LS $@
+
+ (
+ echo "#############################"
+ echo "Expected output for '$H5LS $@'"
+ echo "#############################"
+ $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
+ ) >$actual 2>$actual_err
+ cat $actual_err >> $actual
+
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ls) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+}
+
##############################################################################
### T H E T E S T S ###
##############################################################################
+# Copy single datasets of various forms from one root group to another,
+# adding new object to the destination file each time
TOOLTEST -i $TESTFILE -o $FILEOUT -v -s simple -d simple
TOOLTEST -i $TESTFILE -o $FILEOUT -v -s chunk -d chunk
TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compact -d compact
@@ -129,6 +180,9 @@ TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compressed -d compressed
TOOLTEST -i $TESTFILE -o $FILEOUT -v -s named_vl -d named_vl
TOOLTEST -i $TESTFILE -o $FILEOUT -v -s nested_vl -d nested_vl
+# Verify that the file created above is correct
+H5LSTEST $FILEOUT
+rm -f $FILEOUT
@@ -139,5 +193,3 @@ fi
exit $nerrors
-
-
generated by cgit v0.12 at 2024-11-01 03:52:31 (GMT)