diff options
Diffstat (limited to 'tools/h5copy')
| -rw-r--r-- | tools/h5copy/h5copy.c | 294 | ||||
| -rw-r--r-- | tools/h5copy/testh5copy.sh | 5 |
2 files changed, 167 insertions, 132 deletions
diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c index dacef35..28d768c 100644 --- a/tools/h5copy/h5copy.c +++ b/tools/h5copy/h5copy.c @@ -15,17 +15,29 @@ #include "hdf5.h" #include "h5tools.h" -#include "H5private.h" +#include "h5tools_utils.h" #include <string.h> #include <stdlib.h> -#if 0 -#define H5COPY_DEBUG -#endif - const char *progname="h5copy"; int d_status; +static void leave(int ret); + +/* command-line options: short and long-named parameters */ +static const char *s_opts = "hvf:Vi:o:s:d:"; +static struct long_options l_opts[] = { + { "help", no_arg, 'h' }, + { "verbose", no_arg, 'v' }, + { "flag", require_arg, 'f' }, + { "version", no_arg, 'V' }, + { "input", require_arg, 'i' }, + { "output", require_arg, 'o' }, + { "source", require_arg, 's' }, + { "destination", require_arg, 'd' }, + { NULL, 0, '\0' } +}; + /*------------------------------------------------------------------------- * Function: usage * @@ -45,24 +57,29 @@ usage (void) fprintf(stderr, "\ usage: h5copy [OPTIONS] [OBJECTS...]\n\ OBJECTS\n\ - A pair of 2 HDF5 files (input and output). Each file name\n\ - is followed by a slash and an object name within the file\n\ + -i input file name\n\ + -o output file name\n\ + -s source object name\n\ + -d destination name\n\ OPTIONS\n\ -h Print a usage message and exit\n\ -v Print information about OBJECTS and OPTIONS\n\ + -V Print tool version\n\ -f Flag type\n\n\ Flag type is one of the following strings:\n\n\ - SHALLOW (Copy only immediate members for groups)\n\ - SOFT (Expand soft links into new objects)\n\ - EXT (Expand external links into new objects)\n\ - REF (Copy objects that are pointed by references)\n\ - ATTR (Copy object without copying attributes)\n\n\ + shallow Copy only immediate members for groups\n\ + soft Expand soft links into new objects\n\ + ext Expand external links into new objects\n\ + ref Copy objects that are pointed by references\n\ + noattr Copy object without copying attributes\n\ + allflags Switches all flags from the default to the non-default setting\n\n\ These flag types correspond to the following API symbols\n\n\ H5G_COPY_SHALLOW_HIERARCHY_FLAG\n\ H5G_COPY_EXPAND_SOFT_LINK_FLAG\n\ H5G_COPY_EXPAND_EXT_LINK_FLAG\n\ H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG\n\ - H5G_COPY_WITHOUT_ATTR_FLAG\n"); + H5G_COPY_WITHOUT_ATTR_FLAG\n\ + H5G_COPY_ALL\n"); } @@ -74,11 +91,12 @@ usage: h5copy [OPTIONS] [OBJECTS...]\n\ * * STRING is one of the following (API symbol and description) * - * SHALLOW H5G_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups - * SOFT H5G_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects - * EXT H5G_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects - * REF H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references - * ATTR H5G_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes + * shallow H5G_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups + * soft H5G_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects + * ext H5G_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects + * ref H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references + * noattr H5G_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes + * allflags Switches all flags from the default to the non-default setting * * Return: Success: SUCCEED * Failure: FAIL @@ -95,26 +113,30 @@ static int parse_flag(const char* str_flag, unsigned *flag) { unsigned fla=0; - if (strcmp(str_flag,"SHALLOW")==0) + if (strcmp(str_flag,"shallow")==0) { fla = H5G_COPY_SHALLOW_HIERARCHY_FLAG; } - else if (strcmp(str_flag,"SOFT")==0) + else if (strcmp(str_flag,"soft")==0) { fla = H5G_COPY_EXPAND_SOFT_LINK_FLAG; } - else if (strcmp(str_flag,"EXT")==0) + else if (strcmp(str_flag,"ext")==0) { fla = H5G_COPY_EXPAND_EXT_LINK_FLAG; } - else if (strcmp(str_flag,"REF")==0) + else if (strcmp(str_flag,"ref")==0) { fla = H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG; } - else if (strcmp(str_flag,"ATTR")==0) + else if (strcmp(str_flag,"noattr")==0) { fla = H5G_COPY_WITHOUT_ATTR_FLAG; } + else if (strcmp(str_flag,"allflags")==0) + { + fla = H5G_COPY_ALL; + } else { printf("Error in input flag\n"); @@ -126,9 +148,6 @@ static int parse_flag(const char* str_flag, unsigned *flag) return 0; } - - - /*------------------------------------------------------------------------- * Function: main * @@ -146,152 +165,140 @@ main (int argc, const char *argv[]) { hid_t fid_src=-1; hid_t fid_dst=-1; - int argno; - static char root_name[] = "/"; char *fname_src=NULL; char *fname_dst=NULL; char *oname_src=NULL; char *oname_dst=NULL; - char *x; unsigned flag=0; int verbose=0; hid_t pid; char str_flag[20]; + int opt; /* initialize h5tools lib */ h5tools_init(); - - /* switches come before non-switch arguments */ - for (argno=1; argno<argc && '-'==argv[argno][0]; argno++) + + /* parse command line options */ + while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { - if (strcmp(argv[argno], "-h") == 0) + switch ((char)opt) { + case 'h': usage(); - } - else if (strcmp(argv[argno], "-v") == 0) - { + leave(EXIT_SUCCESS); + break; + + case 'V': + print_version(progname); + leave(EXIT_SUCCESS); + break; + + case 'v': verbose = 1; - } - else if (strcmp(argv[argno], "-f") == 0) - { - /* parse flag */ - if (parse_flag(argv[argno+1],&flag)<0) + break; + + case 'f': + /* validate flag */ + if (parse_flag(opt_arg,&flag)<0) { usage(); - exit(1); + leave(EXIT_FAILURE); } - strcpy(str_flag,argv[argno+1]); + strcpy(str_flag,opt_arg); + break; + + case 'i': + fname_src = strdup(opt_arg); + break; + + case 'o': + fname_dst = strdup(opt_arg); + break; + + case 's': + oname_src = strdup(opt_arg); + break; + + case 'd': + oname_dst = strdup(opt_arg); + break; - /* jump to next */ - ++argno; + case '?': + default: + usage(); + leave(EXIT_FAILURE); } } +/*------------------------------------------------------------------------- + * check for missing file/object names + *-------------------------------------------------------------------------*/ - /* no more arguments remain */ - if (argno>=argc) + if (fname_src==NULL) { + printf("Input file name missing\n"); usage(); - exit(1); + leave(EXIT_FAILURE); } -/*------------------------------------------------------------------------- - * - * each remaining argument is an hdf5 file name followed by an optional slash - * and object name. - * - * Example: test1.h5/bar/baz - * \______/\______/ - * file obj - * - * The dichotomy is determined by calling H5Fopen() repeatedly until it - * succeeds. The first call uses the entire name and each subsequent call - * chops off the last component. If we reach the beginning of the name - * then there must have been something wrong with the file (perhaps it - * doesn't exist). - * - *-------------------------------------------------------------------------*/ + if (fname_dst==NULL) + { + printf("Output file name missing\n"); + usage(); + leave(EXIT_FAILURE); + } - fname_src = HDstrdup(argv[argno++]); + if (oname_src==NULL) + { + printf("Input object name missing\n"); + usage(); + leave(EXIT_FAILURE); + } - while (fname_src && *fname_src) + if (oname_dst==NULL) { -#ifdef H5COPY_DEBUG - printf("%s\n",fname_src); -#endif - fid_src = h5tools_fopen(fname_src, NULL, NULL, 0, argc, argv); - - if (fid_src>=0) - break; /*success*/ - - /* shorten the file name; lengthen the object name */ - x = oname_src; - oname_src = strrchr(fname_src, '/'); - if (x) - *x = '/'; - if (!oname_src) - break; - *oname_src = '\0'; + printf("Destination object name missing\n"); + usage(); + leave(EXIT_FAILURE); } - if (oname_src) - oname_src++; - if (!oname_src || !*oname_src) - oname_src = root_name; + + +/*------------------------------------------------------------------------- + * open input file + *-------------------------------------------------------------------------*/ + + fid_src = h5tools_fopen(fname_src, NULL, NULL, 0, argc, argv); /*------------------------------------------------------------------------- * test for error in opening input file *-------------------------------------------------------------------------*/ if (fid_src==-1) { - printf("Could not open file/object <%s>...Exiting\n",fname_src); + printf("Could not open input file <%s>...Exiting\n",fname_src); if (fname_src) free(fname_src); - return 1; + leave(EXIT_FAILURE); } /*------------------------------------------------------------------------- - * last argument, same logic, but the file might not exist, so we attempt to - * create one instead + * open output file *-------------------------------------------------------------------------*/ - fname_dst = HDstrdup(argv[argno]); + fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - while (fname_dst && *fname_dst) - { - H5E_BEGIN_TRY { - fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - } H5E_END_TRY; - - if (fid_dst>=0) - break; /*success*/ - - /* shorten the file name; lengthen the object name */ - x = oname_dst; - oname_dst = strrchr(fname_dst, '/'); - if (x) - *x = '/'; - if (!oname_dst) - break; - *oname_dst = '\0'; - } - if (oname_dst) - oname_dst++; - if (!oname_dst || !*oname_dst) - oname_dst = NULL; - - /*------------------------------------------------------------------------- - * check destination name + * test for error in opening output file *-------------------------------------------------------------------------*/ - - if (oname_dst==NULL) + if (fid_dst==-1) { - printf("Destination object name missing\n"); - usage(); - goto error; + printf("Could not open output file <%s>...Exiting\n",fname_dst); + if (fname_src) + free(fname_src); + if (fname_dst) + free(fname_dst); + leave(EXIT_FAILURE); } - - + /*------------------------------------------------------------------------- * print some info *-------------------------------------------------------------------------*/ @@ -342,19 +349,23 @@ main (int argc, const char *argv[]) if (H5Pclose(pid)<0) goto error; - if (fid_src>0) - H5Fclose(fid_src); - if (fid_dst>0) - H5Fclose(fid_dst); + /* close files */ + if (H5Fclose(fid_src)<0) + goto error; + if (H5Fclose(fid_dst)<0) + goto error; if (fname_src) free(fname_src); if (fname_dst) free(fname_dst); + if (oname_dst) + free(oname_dst); + if (oname_src) + free(oname_src); h5tools_close(); - return 0; error: @@ -368,10 +379,35 @@ error: free(fname_src); if (fname_dst) free(fname_dst); + if (oname_dst) + free(oname_dst); + if (oname_src) + free(oname_src); h5tools_close(); - return 1; } + +/*------------------------------------------------------------------------- + * Function: leave + * + * Purpose: Shutdown MPI & HDF5 and call exit() + * + * Return: Does not return + * + * Programmer: Quincey Koziol + * Saturday, 31. January 2004 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static void +leave(int ret) +{ + h5tools_close(); + + exit(ret); +}
\ No newline at end of file diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh index 0d7fb7c..1504ea2 100644 --- a/tools/h5copy/testh5copy.sh +++ b/tools/h5copy/testh5copy.sh @@ -64,9 +64,8 @@ TOOLTEST() { ### T H E T E S T S ### ############################################################################## -TOOLTEST -v $srcdir/../testfiles/test1.h5/array test1.out.h5/array -TOOLTEST -v $srcdir/../testfiles/test1.h5/integer test1.out.h5/integer_copy -TOOLTEST -v $srcdir/../testfiles/test1.h5/g1 test1.out.h5/g1 +TOOLTEST -v -i $srcdir/../testfiles/test1.h5 -o test1.out.h5 -s array -d array +TOOLTEST -v -i $srcdir/../testfiles/test1.h5 -o test1.out.h5 -s g1 -d g1 if test $nerrors -eq 0 ; then echo "All h5copy tests passed." |