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-rw-r--r--tools/h5copy/h5copy.c294
-rw-r--r--tools/h5copy/testh5copy.sh5
2 files changed, 167 insertions, 132 deletions
diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c
index dacef35..28d768c 100644
--- a/tools/h5copy/h5copy.c
+++ b/tools/h5copy/h5copy.c
@@ -15,17 +15,29 @@
#include "hdf5.h"
#include "h5tools.h"
-#include "H5private.h"
+#include "h5tools_utils.h"
#include <string.h>
#include <stdlib.h>
-#if 0
-#define H5COPY_DEBUG
-#endif
-
const char *progname="h5copy";
int d_status;
+static void leave(int ret);
+
+/* command-line options: short and long-named parameters */
+static const char *s_opts = "hvf:Vi:o:s:d:";
+static struct long_options l_opts[] = {
+ { "help", no_arg, 'h' },
+ { "verbose", no_arg, 'v' },
+ { "flag", require_arg, 'f' },
+ { "version", no_arg, 'V' },
+ { "input", require_arg, 'i' },
+ { "output", require_arg, 'o' },
+ { "source", require_arg, 's' },
+ { "destination", require_arg, 'd' },
+ { NULL, 0, '\0' }
+};
+
/*-------------------------------------------------------------------------
* Function: usage
*
@@ -45,24 +57,29 @@ usage (void)
fprintf(stderr, "\
usage: h5copy [OPTIONS] [OBJECTS...]\n\
OBJECTS\n\
- A pair of 2 HDF5 files (input and output). Each file name\n\
- is followed by a slash and an object name within the file\n\
+ -i input file name\n\
+ -o output file name\n\
+ -s source object name\n\
+ -d destination name\n\
OPTIONS\n\
-h Print a usage message and exit\n\
-v Print information about OBJECTS and OPTIONS\n\
+ -V Print tool version\n\
-f Flag type\n\n\
Flag type is one of the following strings:\n\n\
- SHALLOW (Copy only immediate members for groups)\n\
- SOFT (Expand soft links into new objects)\n\
- EXT (Expand external links into new objects)\n\
- REF (Copy objects that are pointed by references)\n\
- ATTR (Copy object without copying attributes)\n\n\
+ shallow Copy only immediate members for groups\n\
+ soft Expand soft links into new objects\n\
+ ext Expand external links into new objects\n\
+ ref Copy objects that are pointed by references\n\
+ noattr Copy object without copying attributes\n\
+ allflags Switches all flags from the default to the non-default setting\n\n\
These flag types correspond to the following API symbols\n\n\
H5G_COPY_SHALLOW_HIERARCHY_FLAG\n\
H5G_COPY_EXPAND_SOFT_LINK_FLAG\n\
H5G_COPY_EXPAND_EXT_LINK_FLAG\n\
H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG\n\
- H5G_COPY_WITHOUT_ATTR_FLAG\n");
+ H5G_COPY_WITHOUT_ATTR_FLAG\n\
+ H5G_COPY_ALL\n");
}
@@ -74,11 +91,12 @@ usage: h5copy [OPTIONS] [OBJECTS...]\n\
*
* STRING is one of the following (API symbol and description)
*
- * SHALLOW H5G_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups
- * SOFT H5G_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects
- * EXT H5G_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects
- * REF H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references
- * ATTR H5G_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes
+ * shallow H5G_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups
+ * soft H5G_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects
+ * ext H5G_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects
+ * ref H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references
+ * noattr H5G_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes
+ * allflags Switches all flags from the default to the non-default setting
*
* Return: Success: SUCCEED
* Failure: FAIL
@@ -95,26 +113,30 @@ static int parse_flag(const char* str_flag, unsigned *flag)
{
unsigned fla=0;
- if (strcmp(str_flag,"SHALLOW")==0)
+ if (strcmp(str_flag,"shallow")==0)
{
fla = H5G_COPY_SHALLOW_HIERARCHY_FLAG;
}
- else if (strcmp(str_flag,"SOFT")==0)
+ else if (strcmp(str_flag,"soft")==0)
{
fla = H5G_COPY_EXPAND_SOFT_LINK_FLAG;
}
- else if (strcmp(str_flag,"EXT")==0)
+ else if (strcmp(str_flag,"ext")==0)
{
fla = H5G_COPY_EXPAND_EXT_LINK_FLAG;
}
- else if (strcmp(str_flag,"REF")==0)
+ else if (strcmp(str_flag,"ref")==0)
{
fla = H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG;
}
- else if (strcmp(str_flag,"ATTR")==0)
+ else if (strcmp(str_flag,"noattr")==0)
{
fla = H5G_COPY_WITHOUT_ATTR_FLAG;
}
+ else if (strcmp(str_flag,"allflags")==0)
+ {
+ fla = H5G_COPY_ALL;
+ }
else
{
printf("Error in input flag\n");
@@ -126,9 +148,6 @@ static int parse_flag(const char* str_flag, unsigned *flag)
return 0;
}
-
-
-
/*-------------------------------------------------------------------------
* Function: main
*
@@ -146,152 +165,140 @@ main (int argc, const char *argv[])
{
hid_t fid_src=-1;
hid_t fid_dst=-1;
- int argno;
- static char root_name[] = "/";
char *fname_src=NULL;
char *fname_dst=NULL;
char *oname_src=NULL;
char *oname_dst=NULL;
- char *x;
unsigned flag=0;
int verbose=0;
hid_t pid;
char str_flag[20];
+ int opt;
/* initialize h5tools lib */
h5tools_init();
-
- /* switches come before non-switch arguments */
- for (argno=1; argno<argc && '-'==argv[argno][0]; argno++)
+
+ /* parse command line options */
+ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF)
{
- if (strcmp(argv[argno], "-h") == 0)
+ switch ((char)opt)
{
+ case 'h':
usage();
- }
- else if (strcmp(argv[argno], "-v") == 0)
- {
+ leave(EXIT_SUCCESS);
+ break;
+
+ case 'V':
+ print_version(progname);
+ leave(EXIT_SUCCESS);
+ break;
+
+ case 'v':
verbose = 1;
- }
- else if (strcmp(argv[argno], "-f") == 0)
- {
- /* parse flag */
- if (parse_flag(argv[argno+1],&flag)<0)
+ break;
+
+ case 'f':
+ /* validate flag */
+ if (parse_flag(opt_arg,&flag)<0)
{
usage();
- exit(1);
+ leave(EXIT_FAILURE);
}
- strcpy(str_flag,argv[argno+1]);
+ strcpy(str_flag,opt_arg);
+ break;
+
+ case 'i':
+ fname_src = strdup(opt_arg);
+ break;
+
+ case 'o':
+ fname_dst = strdup(opt_arg);
+ break;
+
+ case 's':
+ oname_src = strdup(opt_arg);
+ break;
+
+ case 'd':
+ oname_dst = strdup(opt_arg);
+ break;
- /* jump to next */
- ++argno;
+ case '?':
+ default:
+ usage();
+ leave(EXIT_FAILURE);
}
}
+/*-------------------------------------------------------------------------
+ * check for missing file/object names
+ *-------------------------------------------------------------------------*/
- /* no more arguments remain */
- if (argno>=argc)
+ if (fname_src==NULL)
{
+ printf("Input file name missing\n");
usage();
- exit(1);
+ leave(EXIT_FAILURE);
}
-/*-------------------------------------------------------------------------
- *
- * each remaining argument is an hdf5 file name followed by an optional slash
- * and object name.
- *
- * Example: test1.h5/bar/baz
- * \______/\______/
- * file obj
- *
- * The dichotomy is determined by calling H5Fopen() repeatedly until it
- * succeeds. The first call uses the entire name and each subsequent call
- * chops off the last component. If we reach the beginning of the name
- * then there must have been something wrong with the file (perhaps it
- * doesn't exist).
- *
- *-------------------------------------------------------------------------*/
+ if (fname_dst==NULL)
+ {
+ printf("Output file name missing\n");
+ usage();
+ leave(EXIT_FAILURE);
+ }
- fname_src = HDstrdup(argv[argno++]);
+ if (oname_src==NULL)
+ {
+ printf("Input object name missing\n");
+ usage();
+ leave(EXIT_FAILURE);
+ }
- while (fname_src && *fname_src)
+ if (oname_dst==NULL)
{
-#ifdef H5COPY_DEBUG
- printf("%s\n",fname_src);
-#endif
- fid_src = h5tools_fopen(fname_src, NULL, NULL, 0, argc, argv);
-
- if (fid_src>=0)
- break; /*success*/
-
- /* shorten the file name; lengthen the object name */
- x = oname_src;
- oname_src = strrchr(fname_src, '/');
- if (x)
- *x = '/';
- if (!oname_src)
- break;
- *oname_src = '\0';
+ printf("Destination object name missing\n");
+ usage();
+ leave(EXIT_FAILURE);
}
- if (oname_src)
- oname_src++;
- if (!oname_src || !*oname_src)
- oname_src = root_name;
+
+
+/*-------------------------------------------------------------------------
+ * open input file
+ *-------------------------------------------------------------------------*/
+
+ fid_src = h5tools_fopen(fname_src, NULL, NULL, 0, argc, argv);
/*-------------------------------------------------------------------------
* test for error in opening input file
*-------------------------------------------------------------------------*/
if (fid_src==-1)
{
- printf("Could not open file/object <%s>...Exiting\n",fname_src);
+ printf("Could not open input file <%s>...Exiting\n",fname_src);
if (fname_src)
free(fname_src);
- return 1;
+ leave(EXIT_FAILURE);
}
/*-------------------------------------------------------------------------
- * last argument, same logic, but the file might not exist, so we attempt to
- * create one instead
+ * open output file
*-------------------------------------------------------------------------*/
- fname_dst = HDstrdup(argv[argno]);
+ fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
- while (fname_dst && *fname_dst)
- {
- H5E_BEGIN_TRY {
- fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
- } H5E_END_TRY;
-
- if (fid_dst>=0)
- break; /*success*/
-
- /* shorten the file name; lengthen the object name */
- x = oname_dst;
- oname_dst = strrchr(fname_dst, '/');
- if (x)
- *x = '/';
- if (!oname_dst)
- break;
- *oname_dst = '\0';
- }
- if (oname_dst)
- oname_dst++;
- if (!oname_dst || !*oname_dst)
- oname_dst = NULL;
-
-
/*-------------------------------------------------------------------------
- * check destination name
+ * test for error in opening output file
*-------------------------------------------------------------------------*/
-
- if (oname_dst==NULL)
+ if (fid_dst==-1)
{
- printf("Destination object name missing\n");
- usage();
- goto error;
+ printf("Could not open output file <%s>...Exiting\n",fname_dst);
+ if (fname_src)
+ free(fname_src);
+ if (fname_dst)
+ free(fname_dst);
+ leave(EXIT_FAILURE);
}
-
-
+
/*-------------------------------------------------------------------------
* print some info
*-------------------------------------------------------------------------*/
@@ -342,19 +349,23 @@ main (int argc, const char *argv[])
if (H5Pclose(pid)<0)
goto error;
- if (fid_src>0)
- H5Fclose(fid_src);
- if (fid_dst>0)
- H5Fclose(fid_dst);
+ /* close files */
+ if (H5Fclose(fid_src)<0)
+ goto error;
+ if (H5Fclose(fid_dst)<0)
+ goto error;
if (fname_src)
free(fname_src);
if (fname_dst)
free(fname_dst);
+ if (oname_dst)
+ free(oname_dst);
+ if (oname_src)
+ free(oname_src);
h5tools_close();
-
return 0;
error:
@@ -368,10 +379,35 @@ error:
free(fname_src);
if (fname_dst)
free(fname_dst);
+ if (oname_dst)
+ free(oname_dst);
+ if (oname_src)
+ free(oname_src);
h5tools_close();
-
return 1;
}
+
+/*-------------------------------------------------------------------------
+ * Function: leave
+ *
+ * Purpose: Shutdown MPI & HDF5 and call exit()
+ *
+ * Return: Does not return
+ *
+ * Programmer: Quincey Koziol
+ * Saturday, 31. January 2004
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+leave(int ret)
+{
+ h5tools_close();
+
+ exit(ret);
+} \ No newline at end of file
diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh
index 0d7fb7c..1504ea2 100644
--- a/tools/h5copy/testh5copy.sh
+++ b/tools/h5copy/testh5copy.sh
@@ -64,9 +64,8 @@ TOOLTEST() {
### T H E T E S T S ###
##############################################################################
-TOOLTEST -v $srcdir/../testfiles/test1.h5/array test1.out.h5/array
-TOOLTEST -v $srcdir/../testfiles/test1.h5/integer test1.out.h5/integer_copy
-TOOLTEST -v $srcdir/../testfiles/test1.h5/g1 test1.out.h5/g1
+TOOLTEST -v -i $srcdir/../testfiles/test1.h5 -o test1.out.h5 -s array -d array
+TOOLTEST -v -i $srcdir/../testfiles/test1.h5 -o test1.out.h5 -s g1 -d g1
if test $nerrors -eq 0 ; then
echo "All h5copy tests passed."