diff options
Diffstat (limited to 'tools/h5copy')
| -rw-r--r-- | tools/h5copy/h5copygentest.c | 339 | ||||
| -rw-r--r-- | tools/h5copy/testfiles/h5copy_ref.h5 | bin | 0 -> 9104 bytes | |||
| -rw-r--r-- | tools/h5copy/testfiles/h5copy_ref.out.ls | 34 | ||||
| -rw-r--r-- | tools/h5copy/testfiles/h5copytst.out.ls | 4 | ||||
| -rw-r--r-- | tools/h5copy/testh5copy.sh | 51 |
5 files changed, 407 insertions, 21 deletions
diff --git a/tools/h5copy/h5copygentest.c b/tools/h5copy/h5copygentest.c index 7842b38..c1e21f3 100644 --- a/tools/h5copy/h5copygentest.c +++ b/tools/h5copy/h5copygentest.c @@ -18,8 +18,14 @@ */ #include <stdlib.h> #include "hdf5.h" +#include "H5private.h" +#include "h5tools.h" -#define FILENAME "h5copytst.h5" +/* HDF file names */ +#define HDF_FILE1 "h5copytst.h5" +#define HDF_FILE2 "h5copy_ref.h5" + +/* objects in HDF_FILE1 */ #define DATASET_SIMPLE "simple" #define DATASET_CHUNK "chunk" #define DATASET_COMPACT "compact" @@ -31,6 +37,13 @@ #define GROUP_DATASETS "grp_dsets" #define GROUP_NESTED "grp_nested" +/* Obj reference */ +#define OBJ_REF_DS "Dset1" +#define OBJ_REF_GRP "Group" +/* Region reference */ +#define REG_REF_DS1 "Dset_REGREF" +#define REG_REF_DS2 "Dset2" + /*------------------------------------------------------------------------- * Function: gent_simple @@ -210,7 +223,8 @@ static void gent_compressed(hid_t loc_id) /*------------------------------------------------------------------------- * Function: gent_named_vl * - * Purpose: Generate a variable lenght named datatype for a dataset in LOC_ID + * Purpose: Generate a variable lenght named datatype for a dataset in + LOC_ID * *------------------------------------------------------------------------- */ @@ -386,23 +400,330 @@ static void gent_nested_group(hid_t loc_id) H5Gclose(gid); } + /*------------------------------------------------------------------------- - * Function: main + * Function: gen_obj_ref * - *------------------------------------------------------------------------- - */ + * Purpose: Generate object references to dataset and group + * + * Programmer: Jonathan Kim (Feb 23, 2010) + *------------------------------------------------------------------------*/ +static herr_t gen_obj_ref(hid_t loc_id) +{ + hid_t sid=0, tid=0, oid=0; + hsize_t dims1[1]={3}; + hsize_t dims2[1]={2}; + int data[3] = {10,20,30}; + int status; + herr_t ret = SUCCEED; + + /*-------------- + * add dataset */ + sid = H5Screate_simple(1, dims1, NULL); + if (sid < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } -int main(void) + tid = H5Tcopy(H5T_NATIVE_INT); + if (tid < 0) + { + fprintf(stderr, "Error: %s %d> H5Tcopy failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + oid = H5Dcreate2 (loc_id, OBJ_REF_DS, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (oid < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + status = H5Dwrite(oid, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + H5Dclose(oid); + H5Tclose(tid); + H5Sclose(sid); + + /*-------------- + * add group */ + oid = H5Gcreate (loc_id, OBJ_REF_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (oid < 0) + { + fprintf(stderr, "Error: %s %d> H5Gcreate failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + H5Gclose(oid); + + /*--------------------- + * create obj references to the previously created objects. + * Passing -1 as reference is an object.*/ + hobj_ref_t or_data[2]; /* write buffer */ + + status = H5Rcreate (&or_data[0], loc_id, OBJ_REF_DS, H5R_OBJECT, -1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + status = H5Rcreate (&or_data[1], loc_id, OBJ_REF_GRP, H5R_OBJECT, -1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + sid = H5Screate_simple (1, dims2, NULL); + if (sid < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); + if (oid < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, or_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + +out: + if(oid > 0) + H5Dclose(oid); + if(sid > 0) + H5Sclose(sid); + if(tid > 0) + H5Tclose(tid); + + return ret; +} + + +/*------------------------------------------------------------------------- + * Function: gen_region_ref + * + * Purpose: Generate dataset region references + * + * Programmer: Jonathan Kim (Feb 23, 2010) + *------------------------------------------------------------------------*/ +static herr_t gen_region_ref(hid_t loc_id) +{ + hid_t sid=0, oid1=0, oid2=0; + int status; + herr_t ret = SUCCEED; + char data[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"}; + hsize_t dims2[2] = {3,16}; + hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} }; + + hdset_reg_ref_t rr_data[2]; + hsize_t start[2] = {0,0}; + hsize_t stride[2] = {2,11}; + hsize_t count[2] = {2,2}; + hsize_t block[2] = {1,3}; + hsize_t dims1[1] = {2}; + + sid = H5Screate_simple (2, dims2, NULL); + if (sid < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* create normal dataset which is refered */ + oid2 = H5Dcreate2 (loc_id, REG_REF_DS2, H5T_STD_I8LE, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); + if (oid2 < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* write values to dataset */ + status = H5Dwrite (oid2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* select elements space for reference */ + status = H5Sselect_elements (sid, H5S_SELECT_SET, 4, coords[0]); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* create region reference from elements space */ + status = H5Rcreate (&rr_data[0], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* select hyperslab space for reference */ + status = H5Sselect_hyperslab (sid, H5S_SELECT_SET, start, stride, count, block); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* create region reference from hyperslab space */ + status = H5Rcreate (&rr_data[1], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + H5Sclose (sid); + + /* Create dataspace. */ + sid = H5Screate_simple (1, dims1, NULL); + if (sid < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* create region reference dataset */ + oid1 = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); + if (oid1 < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + + /* write data as region references */ + status = H5Dwrite (oid1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __FUNCTION__, __LINE__); + ret = FAIL; + goto out; + } + +out: + if (oid1 > 0) + H5Dclose (oid1); + if (oid2 > 0) + H5Dclose (oid2); + if (sid > 0) + H5Sclose (sid); + + return ret; +} + +/*------------------------------------------------------------------------- + * Function: Test_Obj_Copy + * + * Purpose: Testing with various objects + * + *------------------------------------------------------------------------*/ +static void Test_Obj_Copy() { - hid_t fid; + hid_t fid=0; /* Create source file */ - fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + fid = H5Fcreate(HDF_FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_FILE1); + goto out; + } + gent_datasets(fid); gent_empty_group(fid); gent_nested_datasets(fid); gent_nested_group(fid); - H5Fclose(fid); + +out: + /*----------------------------------------------------------------------- + * Close + *------------------------------------------------------------------------*/ + if(fid > 0) + H5Fclose(fid); +} + +/*------------------------------------------------------------------------- + * Function: Test_Ref_Copy + * + * Purpose: Testing with various references + * + *------------------------------------------------------------------------*/ +static void Test_Ref_Copy() +{ + hid_t fid=0; + herr_t status; + + fid = H5Fcreate (HDF_FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_FILE2); + goto out; + } + + /* add object reference */ + status = gen_obj_ref(fid); + if (status < 0) + fprintf(stderr, "Failed to generate object reference.\n"); + + /* add region reference */ + status = gen_region_ref(fid); + if (status < 0) + fprintf(stderr, "Failed to generate region reference.\n"); + +out: + /*----------------------------------------------------------------------- + * Close + *------------------------------------------------------------------------*/ + if(fid > 0) + H5Fclose(fid); +} + +/*------------------------------------------------------------------------- + * Function: main + * + *------------------------------------------------------------------------- + */ + +int main(void) +{ + Test_Obj_Copy(); + Test_Ref_Copy(); return 0; } diff --git a/tools/h5copy/testfiles/h5copy_ref.h5 b/tools/h5copy/testfiles/h5copy_ref.h5 Binary files differnew file mode 100644 index 0000000..bd727e6 --- /dev/null +++ b/tools/h5copy/testfiles/h5copy_ref.h5 diff --git a/tools/h5copy/testfiles/h5copy_ref.out.ls b/tools/h5copy/testfiles/h5copy_ref.out.ls new file mode 100644 index 0000000..8549842 --- /dev/null +++ b/tools/h5copy/testfiles/h5copy_ref.out.ls @@ -0,0 +1,34 @@ +############################# +Expected output for 'h5ls ./testfiles/h5copy_ref.out.h5' +############################# +Opened "./testfiles/h5copy_ref.out.h5" with sec2 driver. +/ Group + Location: 1:96 + Links: 1 +/COPY Group + Location: 1:1464 + Links: 1 +/COPY/Dset1 Dataset {3/3} + Location: 1:1504 + Links: 2 + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/COPY/Dset2 Dataset {3/3, 16/16} + Location: 1:1960 + Links: 3 + Storage: <details removed for portability> + Type: 8-bit integer +/COPY/Dset_OBJREF Dataset {2/2} + Location: 1:5184 + Links: 1 + Storage: <details removed for portability> + Type: object reference +/COPY/Dset_REGREF Dataset {2/2} + Location: 1:9400 + Links: 1 + Storage: <details removed for portability> + Type: dataset region reference +/COPY/Group Group + Location: 1:2096 + Links: 3 +/~obj_pointed_by_2096 Group, same as /COPY/Group diff --git a/tools/h5copy/testfiles/h5copytst.out.ls b/tools/h5copy/testfiles/h5copytst.out.ls index 5ff1e90..af6cd8f 100644 --- a/tools/h5copy/testfiles/h5copytst.out.ls +++ b/tools/h5copy/testfiles/h5copytst.out.ls @@ -1,7 +1,7 @@ ############################# -Expected output for 'h5ls ../testfiles/h5copytst.out.h5' +Expected output for 'h5ls ./testfiles/h5copytst.out.h5' ############################# -Opened "../testfiles/h5copytst.out.h5" with sec2 driver. +Opened "./testfiles/h5copytst.out.h5" with sec2 driver. / Group Location: 1:96 Links: 1 diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh index 4f1d8cc..c94f26a 100644 --- a/tools/h5copy/testh5copy.sh +++ b/tools/h5copy/testh5copy.sh @@ -23,6 +23,10 @@ TESTNAME=h5copy EXIT_SUCCESS=0 EXIT_FAILURE=1 +# Test files +HDF_FILE1=h5copytst.h5 +HDF_FILE2=h5copy_ref.h5 + H5COPY=h5copy # The tool name H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary H5DIFF=h5diff # The h5diff tool name @@ -30,20 +34,19 @@ H5DIFF_BIN=`pwd`/../h5diff/$H5DIFF # The path of the h5diff tool binary H5LS=h5ls # The h5ls tool name H5LS_ARGS=-Svr # Arguments to the h5ls tool H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary +CMP='cmp -s' +DIFF='diff -c' nerrors=0 verbose=yes -SRCFILE=h5copytst.h5 -INDIR=$srcdir/testfiles -OUTDIR=../testfiles -CMP='cmp -s' -DIFF='diff -c' - # The build (current) directory might be different than the source directory. if test -z "$srcdir"; then srcdir=. fi +INDIR=$srcdir/testfiles +OUTDIR=$srcdir/testfiles + test -d $OUTDIR || mkdir $OUTDIR # Print a line-line message left justified in a field of 70 characters @@ -242,10 +245,10 @@ H5LSTEST() # # Assumed arguments: # <none> -COPYOBJECTS() +COPY_OBJECTS() { - TESTFILE="$INDIR/$SRCFILE" - FILEOUT="$OUTDIR/`basename $SRCFILE .h5`.out.h5" + TESTFILE="$INDIR/$HDF_FILE1" + FILEOUT="$OUTDIR/`basename $HDF_FILE1 .h5`.out.h5" # Remove any output file left over from previous test run rm -f $FILEOUT @@ -296,11 +299,39 @@ COPYOBJECTS() fi } +# Copy references in various way. +# adding to the destination file each time compare the result +# +# Assumed arguments: +# <none> +COPY_REFERENCES() +{ + TESTFILE="$INDIR/$HDF_FILE2" + FILEOUT="$OUTDIR/`basename $HDF_FILE2 .h5`.out.h5" + + # Remove any output file left over from previous test run + rm -f $FILEOUT + + echo "Test copying object and region references" + echo "TOOLTEST -f ref -i $TESTFILE -o $FILEOUT -v -s / -d /COPY" + TOOLTEST -f ref -i $TESTFILE -o $FILEOUT -v -s / -d /COPY + + # Verify that the file created above is correct + H5LSTEST $FILEOUT + + # Remove output file created, if the "no cleanup" environment variable is + # not defined + #if test -z "$HDF5_NOCLEANUP"; then + # rm -f $FILEOUT + #fi +} + ############################################################################## ### T H E T E S T S ### ############################################################################## -COPYOBJECTS +COPY_OBJECTS +COPY_REFERENCES if test $nerrors -eq 0 ; then |