5 files changed, 31 insertions, 41 deletions
diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt
index 903564f..994a6f2 100644
--- a/tools/h5diff/CMakeLists.txt
+++ b/tools/h5diff/CMakeLists.txt
@@ -1436,7 +1436,7 @@ ENDIF (BUILD_TESTING)
 # Rules for Installation of tools using make Install target
 #-----------------------------------------------------------------------------
 
-INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications)
+#INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications)
 
 INSTALL (
     TARGETS
@@ -1449,7 +1449,7 @@ INSTALL (
 
 IF (H5_HAVE_PARALLEL)
 
-  INSTALL_PROGRAM_PDB (ph5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications)
+  #INSTALL_PROGRAM_PDB (ph5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications)
 
   INSTALL (
       TARGETS
diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am
index 0b8816f..190c083 100644
--- a/tools/h5diff/Makefile.am
+++ b/tools/h5diff/Makefile.am
@@ -27,7 +27,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
 # is enabled.
 if BUILD_PARALLEL_CONDITIONAL
   H5PDIFF=ph5diff
-  TEST_SCRIPT_PARA=$(srcdir)/testph5diff.sh
+  TEST_SCRIPT_PARA=testph5diff.sh
 endif
 
 # Our main target, h5diff
@@ -38,7 +38,7 @@ h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
 
 # Test programs and scripts
 TEST_PROG=h5diffgentest
-TEST_SCRIPT=$(srcdir)/testh5diff.sh
+TEST_SCRIPT=testh5diff.sh
 
 check_PROGRAMS=$(TEST_PROG)
 check_SCRIPTS=$(TEST_SCRIPT) $(TEST_SCRIPT_PARA)
diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in
index 66d2c90..4676341 100644
--- a/tools/h5diff/Makefile.in
+++ b/tools/h5diff/Makefile.in
@@ -68,20 +68,21 @@ POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
+	$(srcdir)/testh5diff.sh.in $(srcdir)/testph5diff.sh.in \
 	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \
 	$(top_srcdir)/config/commence.am \
 	$(top_srcdir)/config/conclude.am
 bin_PROGRAMS = h5diff$(EXEEXT) $(am__EXEEXT_1)
 check_PROGRAMS = $(am__EXEEXT_2)
-TESTS = $(check_PROGRAMS) $(check_SCRIPTS)
+TESTS = $(am__EXEEXT_2) $(TEST_SCRIPT)
 subdir = tools/h5diff
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/src/H5config.h
-CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_FILES = testh5diff.sh testph5diff.sh
 CONFIG_CLEAN_VPATH_FILES =
 @BUILD_PARALLEL_CONDITIONAL_TRUE@am__EXEEXT_1 = ph5diff$(EXEEXT)
 am__installdirs = "$(DESTDIR)$(bindir)"
@@ -156,7 +157,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -174,12 +175,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -448,14 +446,14 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
 # Always build and test h5diff but build and test ph5diff only if parallel
 # is enabled.
 @BUILD_PARALLEL_CONDITIONAL_TRUE@H5PDIFF = ph5diff
-@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = $(srcdir)/testph5diff.sh
+@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = testph5diff.sh
 
 # Add h5diff specific linker flags here
 h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
 
 # Test programs and scripts
 TEST_PROG = h5diffgentest
-TEST_SCRIPT = $(srcdir)/testh5diff.sh
+TEST_SCRIPT = testh5diff.sh
 check_SCRIPTS = $(TEST_SCRIPT) $(TEST_SCRIPT_PARA)
 # The parallel test script testph5diff.sh actually depends on testh5diff.sh.
 SCRIPT_DEPEND = h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh
@@ -479,6 +477,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -518,6 +520,10 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
 $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 $(am__aclocal_m4_deps):
+testh5diff.sh: $(top_builddir)/config.status $(srcdir)/testh5diff.sh.in
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+testph5diff.sh: $(top_builddir)/config.status $(srcdir)/testph5diff.sh.in
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
 install-binPROGRAMS: $(bin_PROGRAMS)
 	@$(NORMAL_INSTALL)
 	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
@@ -860,7 +866,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -886,7 +892,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -910,7 +916,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -920,7 +926,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1010,7 +1016,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1040,7 +1046,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/tools/h5diff/testh5diff.sh b/tools/h5diff/testh5diff.sh.in
index 02dacd8..3455287 100755..100644
--- a/tools/h5diff/testh5diff.sh
+++ b/tools/h5diff/testh5diff.sh.in
@@ -29,7 +29,7 @@
 #    Added test 400 - 425  (links with --follow-symlinks option)
 #    Added test 450 - 459  (dangling links)
 
-
+srcdir=@srcdir@
 
 TESTNAME=h5diff
 EXIT_SUCCESS=0
@@ -51,11 +51,6 @@ h5haveexitcode=yes	    # default is yes
 pmode=			    # default to run h5diff tests
 mydomainname=`domainname 2>/dev/null`
 
-# The build (current) directory might be different than the source directory.
-if test -z "$srcdir"; then
-   srcdir=.
-fi
-
 # source dirs
 SRC_TOOLS="$srcdir/.."
 SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
@@ -100,8 +95,6 @@ $SRC_H5DIFF_TESTFILES/h5diff_extlink_src.h5
 $SRC_H5DIFF_TESTFILES/h5diff_extlink_trg.h5
 $SRC_H5DIFF_TESTFILES/h5diff_ext2softlink_src.h5
 $SRC_H5DIFF_TESTFILES/h5diff_ext2softlink_trg.h5
-$SRC_H5DIFF_TESTFILES/h5diff_dset_idx1.h5
-$SRC_H5DIFF_TESTFILES/h5diff_dset_idx2.h5
 $SRC_H5DIFF_TESTFILES/h5diff_dset_zero_dim_size1.h5
 $SRC_H5DIFF_TESTFILES/h5diff_dset_zero_dim_size2.h5
 $SRC_H5DIFF_TESTFILES/h5diff_danglelinks1.h5
@@ -938,12 +931,6 @@ TOOLTEST h5diff_424.txt --follow-symlinks -v h5diff_ext2softlink_trg.h5 h5diff_e
 # extlink_to_softlink_to_dset1 vs extlink_to_softlink_to_dset2"
 TOOLTEST h5diff_425.txt --follow-symlinks -v h5diff_ext2softlink_src.h5 h5diff_ext2softlink_src.h5 /ext_link_to_slink1 /ext_link_to_slink2
 
-# ##############################################################################
-# 19.  The comparision for the two datasets between the 2 files should be the same
-#		FILE19: B-tree indexing is used for the datasets
-#		FILE20: Fixed Array indexing is used for the datasets
-# ##############################################################################
-TOOLTEST h5diff_idx.txt -v $FILE19 $FILE20 
 
 # ##############################################################################
 # # Dangling links compare (--follow-symlinks and --no-dangling-links)
diff --git a/tools/h5diff/testph5diff.sh b/tools/h5diff/testph5diff.sh.in
index c619ab5..ca212a1 100755..100644
--- a/tools/h5diff/testph5diff.sh
+++ b/tools/h5diff/testph5diff.sh.in
@@ -14,16 +14,13 @@
 # access to either file, you may request a copy from help@hdfgroup.org.
 #
 
-# The build (current) directory might be different than the source directory.
-if test -z "$srcdir"; then
-   srcdir=.
-fi
+srcdir=@srcdir@
 
 TESTNAME=ph5diff
 EXIT_SUCCESS=0
 EXIT_FAILURE=1
 
-TOOL=${srcdir}/testh5diff.sh
+TOOL=testh5diff.sh
 
 nerrors=0