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diff --git a/tools/h5dump/testh5dumpvds.sh.in b/tools/h5dump/testh5dumpvds.sh.in
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--- a/tools/h5dump/testh5dumpvds.sh.in
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@@ -1,523 +0,0 @@
-#! /bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-#
-# Tests for the h5dump tool with vds type files
-
-srcdir=@srcdir@
-
-# Determine which filters are available
-USE_FILTER_SZIP="@USE_FILTER_SZIP@"
-USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
-
-TESTNAME=h5dump
-EXIT_SUCCESS=0
-EXIT_FAILURE=1
-
-DUMPER=h5dump # The tool name
-DUMPER_BIN=`pwd`/$DUMPER # The path of the tool binary
-
-H5DIFF=../h5diff/h5diff # The h5diff tool name
-H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
-
-H5IMPORT=../h5import/h5import # The h5import tool name
-H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary
-
-RM='rm -rf'
-CMP='cmp -s'
-DIFF='diff -c'
-CP='cp'
-DIRNAME='dirname'
-LS='ls'
-AWK='awk'
-
-nerrors=0
-verbose=yes
-
-# source dirs
-SRC_TOOLS="$srcdir/../"
-
-SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
-# testfiles source dirs for tools
-SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
-SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
-SRC_H5DUMP_ERRORFILES="$srcdir/errfiles"
-SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
-SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
-SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
-SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
-SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
-SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
-
-TEST_P_DIR=./testfiles
-TESTDIR=./testfiles/vds
-test -d $TEST_P_DIR || mkdir -p $TEST_P_DIR
-test -d $TESTDIR || mkdir -p $TESTDIR
-
-######################################################################
-# test files
-# --------------------------------------------------------------------
-# All the test files copy from source directory to test directory
-# NOTE: Keep this framework to add/remove test files.
-# Any test files from other tools can be used in this framework.
-# This list are also used for checking exist.
-# Comment '#' without space can be used.
-# --------------------------------------------------------------------
-LIST_HDF5_TEST_FILES="
-$SRC_H5DUMP_TESTFILES/vds/1_a.h5
-$SRC_H5DUMP_TESTFILES/vds/1_b.h5
-$SRC_H5DUMP_TESTFILES/vds/1_c.h5
-$SRC_H5DUMP_TESTFILES/vds/1_d.h5
-$SRC_H5DUMP_TESTFILES/vds/1_e.h5
-$SRC_H5DUMP_TESTFILES/vds/1_f.h5
-$SRC_H5DUMP_TESTFILES/vds/1_vds.h5
-$SRC_H5DUMP_TESTFILES/vds/2_a.h5
-$SRC_H5DUMP_TESTFILES/vds/2_b.h5
-$SRC_H5DUMP_TESTFILES/vds/2_c.h5
-$SRC_H5DUMP_TESTFILES/vds/2_d.h5
-$SRC_H5DUMP_TESTFILES/vds/2_e.h5
-$SRC_H5DUMP_TESTFILES/vds/2_vds.h5
-$SRC_H5DUMP_TESTFILES/vds/3_1_vds.h5
-$SRC_H5DUMP_TESTFILES/vds/3_2_vds.h5
-$SRC_H5DUMP_TESTFILES/vds/4_0.h5
-$SRC_H5DUMP_TESTFILES/vds/4_1.h5
-$SRC_H5DUMP_TESTFILES/vds/4_2.h5
-$SRC_H5DUMP_TESTFILES/vds/4_vds.h5
-$SRC_H5DUMP_TESTFILES/vds/5_a.h5
-$SRC_H5DUMP_TESTFILES/vds/5_b.h5
-$SRC_H5DUMP_TESTFILES/vds/5_c.h5
-$SRC_H5DUMP_TESTFILES/vds/5_vds.h5
-$SRC_H5DUMP_TESTFILES/vds/a.h5
-$SRC_H5DUMP_TESTFILES/vds/b.h5
-$SRC_H5DUMP_TESTFILES/vds/c.h5
-$SRC_H5DUMP_TESTFILES/vds/d.h5
-$SRC_H5DUMP_TESTFILES/vds/vds-percival-unlim-maxmin.h5
-$SRC_H5DUMP_TESTFILES/vds/f-0.h5
-$SRC_H5DUMP_TESTFILES/vds/f-3.h5
-$SRC_H5DUMP_TESTFILES/vds/vds-eiger.h5
-"
-
-LIST_OTHER_TEST_FILES="
-$SRC_H5DUMP_TESTFILES/vds/tvds-1.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds-2.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds-3_1.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds-3_2.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds-4.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds-5.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds_layout-1.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds_layout-2.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_1.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_2.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds_layout-4.ddl
-$SRC_H5DUMP_TESTFILES/vds/tvds_layout-5.ddl
-$SRC_H5DUMP_TESTFILES/vds/vds-first.ddl
-$SRC_H5DUMP_TESTFILES/vds/vds-gap1.ddl
-$SRC_H5DUMP_TESTFILES/vds/vds-gap2.ddl
-$SRC_H5DUMP_TESTFILES/vds/vds_layout-eiger.ddl
-$SRC_H5DUMP_TESTFILES/vds/vds_layout-maxmin.ddl
-"
-
-LIST_ERROR_TEST_FILES="
-"
-
-#
-# copy test files and expected output files from source dirs to test dir
-#
-COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES $LIST_ERROR_TEST_FILES"
-
-COPY_TESTFILES_TO_TESTDIR()
-{
- # copy test files. Used -f to make sure get a new copy
- for tstfile in $COPY_TESTFILES
- do
- # ignore '#' comment
- echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
- RET=$?
- if [ $RET -eq 1 ]; then
- # skip cp if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=`$DIRNAME $tstfile`
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $TESTDIR
- if [ $? -ne 0 ]; then
- echo "Error: FAILED to copy $tstfile ."
-
- # Comment out this to CREATE expected file
- exit $EXIT_FAILURE
- fi
- fi
- fi
- done
-}
-
-CLEAN_TESTFILES_AND_TESTDIR()
-{
- # skip rm if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=$SRC_H5DUMP_TESTFILES/vds
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $RM $TESTDIR
- fi
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Testing".
-#
-TESTING() {
- SPACES=" "
- echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Source in the output filter function definitions.
-. $srcdir/../../bin/output_filter.sh
-
-# Run a test and print PASS or *FAIL*. If a test fails then increment
-# the `nerrors' global variable and (if $verbose is set) display the
-# difference between the actual output and the expected output. The
-# expected output is given as the first argument to this function and
-# the actual output file is calculated by replacing the `.ddl' with
-# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
-# non-zero value.
-#
-TOOLTEST() {
- expect="$TESTDIR/$1"
- actual="$TESTDIR/`basename $1 .ddl`.out"
- actual_err="$TESTDIR/`basename $1 .ddl`.err"
- actual_sav=${actual}-sav
- actual_err_sav=${actual_err}-sav
- shift
-
- # Run test.
- TESTING $DUMPER $@
- (
- cd $TESTDIR
- $RUNSERIAL $DUMPER_BIN "$@"
- ) >$actual 2>$actual_err
-
- # save actual and actual_err in case they are needed later.
- cp $actual $actual_sav
- STDOUT_FILTER $actual
- cp $actual_err $actual_err_sav
- STDERR_FILTER $actual_err
- cat $actual_err >> $actual
-
- if [ ! -f $expect ]; then
- # Create the expect file if it doesn't yet exist.
- echo " CREATED"
- cp $actual $expect
- elif $CMP $expect $actual; then
- echo " PASSED"
- else
- echo "*FAILED*"
- echo " Expected result (*.ddl) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
- fi
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
- fi
-
-}
-
-
-# same as TOOLTEST1 but compares generated file to expected output
-# and compares the generated data file to the expected data file
-# used for the binary tests that expect a full path in -o without -b
-TOOLTEST2() {
-
- expectdata="$TESTDIR/$1"
- expect="$TESTDIR/`basename $1 .exp`.ddl"
- actualdata="$TESTDIR/`basename $1 .exp`.txt"
- actual="$TESTDIR/`basename $1 .exp`.out"
- actual_err="$TESTDIR/`basename $1 .exp`.err"
- shift
-
- # Run test.
- TESTING $DUMPER $@
- (
- cd $TESTDIR
- $RUNSERIAL $DUMPER_BIN "$@"
- ) >$actual 2>$actual_err
- cat $actual_err >> $actual
-
- if [ ! -f $expect ]; then
- # Create the expect file if it doesn't yet exist.
- echo " CREATED"
- cp $actual $expect
- elif $CMP $expect $actual; then
- if [ ! -f $expectdata ]; then
- # Create the expect data file if it doesn't yet exist.
- echo " CREATED"
- cp $actualdata $expectdata
- elif $CMP $expectdata $actualdata; then
- echo " PASSED"
- else
- echo "*FAILED*"
- echo " Expected datafile (*.exp) differs from actual datafile (*.txt)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/ /'
- fi
- else
- echo "*FAILED*"
- echo " Expected result (*.ddl) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
- fi
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actualdata $actual_err
- fi
-
-}
-
-# same as TOOLTEST but filters error stack outp
-# Extract file name, line number, version and thread IDs because they may be different
-TOOLTEST3() {
-
- expect="$TESTDIR/$1"
- actual="$TESTDIR/`basename $1 .ddl`.out"
- actual_err="$TESTDIR/`basename $1 .ddl`.err"
- actual_ext="$TESTDIR/`basename $1 .ddl`.ext"
- actual_sav=${actual}-sav
- actual_err_sav=${actual_err}-sav
- shift
-
- # Run test.
- TESTING $DUMPER $@
- (
- cd $TESTDIR
- $RUNSERIAL $DUMPER_BIN "$@"
- ) >$actual 2>$actual_err
-
- # save actual and actual_err in case they are needed later.
- cp $actual $actual_sav
- STDOUT_FILTER $actual
- cp $actual_err $actual_err_sav
- STDERR_FILTER $actual_err
-
- # Extract file name, line number, version and thread IDs because they may be different
- sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
- -e 's/line [0-9]*/line (number)/' \
- -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
- -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
- -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \
- -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \
- $actual_err > $actual_ext
- cat $actual_ext >> $actual
-
- if [ ! -f $expect ]; then
- # Create the expect file if it doesn't yet exist.
- echo " CREATED"
- cp $actual $expect
- elif $CMP $expect $actual; then
- echo " PASSED"
- else
- echo "*FAILED*"
- echo " Expected result (*.ddl) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
- fi
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err $actual_sav $actual_err_sav
- fi
-
-}
-
-# same as TOOLTEST3 but filters error stack output and compares to an error file
-# Extract file name, line number, version and thread IDs because they may be different
-TOOLTEST4() {
-
- expect="$TESTDIR/$1"
- expect_err="$TESTDIR/`basename $1 .ddl`.err"
- actual="$TESTDIR/`basename $1 .ddl`.out"
- actual_err="$TESTDIR/`basename $1 .ddl`.oerr"
- actual_ext="$TESTDIR/`basename $1 .ddl`.ext"
- actual_sav=${actual}-sav
- actual_err_sav=${actual_err}-sav
- shift
-
- # Run test.
- TESTING $DUMPER $@
- (
- cd $TESTDIR
- $RUNSERIAL $DUMPER_BIN "$@"
- ) >$actual 2>$actual_err
-
- # save actual and actual_err in case they are needed later.
- cp $actual $actual_sav
- STDOUT_FILTER $actual
- cp $actual_err $actual_err_sav
- STDERR_FILTER $actual_err
-
- # Extract file name, line number, version and thread IDs because they may be different
- sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
- -e 's/line [0-9]*/line (number)/' \
- -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
- -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
- -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \
- -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \
- $actual_err > $actual_ext
- #cat $actual_ext >> $actual
-
- if [ ! -f $expect ]; then
- # Create the expect file if it doesn't yet exist.
- echo " CREATED"
- cp $actual $expect
- elif $CMP $expect $actual; then
- if $CMP $expect_err $actual_ext; then
- echo " PASSED"
- else
- echo "*FAILED*"
- echo " Expected result (*.err) differs from actual result (*.oerr)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/ /'
- fi
- else
- echo "*FAILED*"
- echo " Expected result (*.ddl) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
- fi
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err $actual_sav $actual_err_sav
- fi
-
-}
-
-# Print a "SKIP" message
-SKIP() {
- TESTING $DUMPER $@
- echo " -SKIP-"
-}
-
-# Print a line-line message left justified in a field of 70 characters
-#
-PRINT_H5DIFF() {
- SPACES=" "
- echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-
-# Call the h5diff tool
-#
-DIFFTEST()
-{
- PRINT_H5DIFF $@
- (
- cd $TESTDIR
- $RUNSERIAL $H5DIFF_BIN "$@" -q
- )
- RET=$?
- if [ $RET != 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
- else
- echo " PASSED"
- fi
-
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Verifying".
-#
-PRINT_H5IMPORT() {
- SPACES=" "
- echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Call the h5import tool
-#
-IMPORTTEST()
-{
- # remove the output hdf5 file if it exists
- hdf5_file="$TESTDIR/$5"
- if [ -f $hdf5_file ]; then
- rm -f $hdf5_file
- fi
-
- PRINT_H5IMPORT $@
- (
- cd $TESTDIR
- $RUNSERIAL $H5IMPORT_BIN "$@"
- )
- RET=$?
- if [ $RET != 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
- else
- echo " PASSED"
- fi
-
-}
-
-
-##############################################################################
-##############################################################################
-### T H E T E S T S ###
-##############################################################################
-##############################################################################
-# prepare for test
-COPY_TESTFILES_TO_TESTDIR
-
-####### test for dataset vds ######
-
- # Data read
-if test $USE_FILTER_DEFLATE = "yes" ; then
- TOOLTEST tvds-1.ddl --enable-error-stack 1_vds.h5
- TOOLTEST tvds-2.ddl --enable-error-stack 2_vds.h5
- TOOLTEST tvds-3_1.ddl --enable-error-stack 3_1_vds.h5
- TOOLTEST tvds-3_2.ddl --enable-error-stack 3_2_vds.h5
- TOOLTEST tvds-4.ddl --enable-error-stack 4_vds.h5
- TOOLTEST tvds-5.ddl --enable-error-stack 5_vds.h5
- TOOLTEST vds-first.ddl --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5
- TOOLTEST vds-gap1.ddl -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5
- TOOLTEST vds-gap2.ddl --vds-gap-size=2 --enable-error-stack vds-eiger.h5
-fi
-
- # Layout read
-if test $USE_FILTER_DEFLATE = "yes" ; then
- TOOLTEST tvds_layout-1.ddl -p --enable-error-stack 1_vds.h5
- TOOLTEST tvds_layout-2.ddl -p --enable-error-stack 2_vds.h5
- TOOLTEST tvds_layout-3_1.ddl -p --enable-error-stack 3_1_vds.h5
- TOOLTEST tvds_layout-3_2.ddl -p --enable-error-stack 3_2_vds.h5
- TOOLTEST tvds_layout-4.ddl -p --enable-error-stack 4_vds.h5
- TOOLTEST tvds_layout-5.ddl -p --enable-error-stack 5_vds.h5
- TOOLTEST vds_layout-eiger.ddl -p --enable-error-stack vds-eiger.h5
- TOOLTEST vds_layout-maxmin.ddl -p --enable-error-stack vds-percival-unlim-maxmin.h5
-fi
-
-# Clean up temporary files/directories
-CLEAN_TESTFILES_AND_TESTDIR
-
-# Report test results and exit
-if test $nerrors -eq 0 ; then
- echo "All $TESTNAME tests passed."
- exit $EXIT_SUCCESS
-else
- echo "$TESTNAME tests failed with $nerrors errors."
- exit $EXIT_FAILURE
-fi