diff options
Diffstat (limited to 'tools/h5dump')
| -rw-r--r-- | tools/h5dump/h5dump.c | 3698 |
1 files changed, 1805 insertions, 1893 deletions
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 0a2ca3b..5706837 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -56,7 +56,7 @@ const char *progname = "h5dump"; #define H5_SZIP_RAW_OPTION_MASK 128 int d_status = EXIT_SUCCESS; -static int unamedtype = 0; /* shared data type with no name */ +static int unamedtype = 0; /* shared datatype with no name */ static table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL; static size_t prefix_len = 1024; static char *prefix; @@ -621,7 +621,7 @@ usage(const char *prog) fprintf(stdout, " with -o (output file) and -d (dataset). B can be:\n"); fprintf(stdout, " MEMORY for a memory type, FILE for the file type,\n"); fprintf(stdout, " LE or BE for pre-existing little or big endian types\n"); - fprintf(stdout, " -t P, --datatype=P Print the specified named data type\n"); + fprintf(stdout, " -t P, --datatype=P Print the specified named datatype\n"); fprintf(stdout, " -w N, --width=N Set the number of columns of output\n"); fprintf(stdout, " -x, --xml Output in XML using Schema\n"); fprintf(stdout, " -u, --use-dtd Output in XML using DTD\n"); @@ -674,7 +674,7 @@ usage(const char *prog) /*------------------------------------------------------------------------- * Function: print_datatype * - * Purpose: print the data type. + * Purpose: print the datatype. * * Return: void * @@ -706,16 +706,14 @@ print_datatype(hid_t type,unsigned in_group) const char *sign_s=NULL; /* sign scheme string */ if (!in_group && H5Tcommitted(type) > 0) { - H5G_stat_t statbuf; - haddr_t objno; /* Compact form of object's location */ + H5O_info_t oinfo; obj_t *obj; /* Found object */ - H5Gget_objinfo(type, ".", TRUE, &statbuf); - objno = (haddr_t)statbuf.objno[0] | ((haddr_t)statbuf.objno[1] << (8 * sizeof(long))); - obj = search_obj(type_table, objno); + H5Oget_info(type, ".", &oinfo, H5P_DEFAULT); + obj = search_obj(type_table, oinfo.addr); - if (obj) { - if (!obj->recorded) + if(obj) { + if(!obj->recorded) HDfprintf(stdout,"\"/#%a\"", obj->objno); else printf("\"%s\"", obj->objname); @@ -724,371 +722,369 @@ print_datatype(hid_t type,unsigned in_group) d_status = EXIT_FAILURE; } } else { - switch (H5Tget_class(type)) { - case H5T_INTEGER: - if (H5Tequal(type, H5T_STD_I8BE)==TRUE) { - printf("H5T_STD_I8BE"); - } else if (H5Tequal(type, H5T_STD_I8LE)==TRUE) { - printf("H5T_STD_I8LE"); - } else if (H5Tequal(type, H5T_STD_I16BE)==TRUE) { - printf("H5T_STD_I16BE"); - } else if (H5Tequal(type, H5T_STD_I16LE)==TRUE) { - printf("H5T_STD_I16LE"); - } else if (H5Tequal(type, H5T_STD_I32BE)==TRUE) { - printf("H5T_STD_I32BE"); - } else if (H5Tequal(type, H5T_STD_I32LE)==TRUE) { - printf("H5T_STD_I32LE"); - } else if (H5Tequal(type, H5T_STD_I64BE)==TRUE) { - printf("H5T_STD_I64BE"); - } else if (H5Tequal(type, H5T_STD_I64LE)==TRUE) { - printf("H5T_STD_I64LE"); - } else if (H5Tequal(type, H5T_STD_U8BE)==TRUE) { - printf("H5T_STD_U8BE"); - } else if (H5Tequal(type, H5T_STD_U8LE)==TRUE) { - printf("H5T_STD_U8LE"); - } else if (H5Tequal(type, H5T_STD_U16BE)==TRUE) { - printf("H5T_STD_U16BE"); - } else if (H5Tequal(type, H5T_STD_U16LE)==TRUE) { - printf("H5T_STD_U16LE"); - } else if (H5Tequal(type, H5T_STD_U32BE)==TRUE) { - printf("H5T_STD_U32BE"); - } else if (H5Tequal(type, H5T_STD_U32LE)==TRUE) { - printf("H5T_STD_U32LE"); - } else if (H5Tequal(type, H5T_STD_U64BE)==TRUE) { - printf("H5T_STD_U64BE"); - } else if (H5Tequal(type, H5T_STD_U64LE)==TRUE) { - printf("H5T_STD_U64LE"); - } else if (H5Tequal(type, H5T_NATIVE_SCHAR)==TRUE) { - printf("H5T_NATIVE_SCHAR"); - } else if (H5Tequal(type, H5T_NATIVE_UCHAR)==TRUE) { - printf("H5T_NATIVE_UCHAR"); - } else if (H5Tequal(type, H5T_NATIVE_SHORT)==TRUE) { - printf("H5T_NATIVE_SHORT"); - } else if (H5Tequal(type, H5T_NATIVE_USHORT)==TRUE) { - printf("H5T_NATIVE_USHORT"); - } else if (H5Tequal(type, H5T_NATIVE_INT)==TRUE) { - printf("H5T_NATIVE_INT"); - } else if (H5Tequal(type, H5T_NATIVE_UINT)==TRUE) { - printf("H5T_NATIVE_UINT"); - } else if (H5Tequal(type, H5T_NATIVE_LONG)==TRUE) { - printf("H5T_NATIVE_LONG"); - } else if (H5Tequal(type, H5T_NATIVE_ULONG)==TRUE) { - printf("H5T_NATIVE_ULONG"); - } else if (H5Tequal(type, H5T_NATIVE_LLONG)==TRUE) { - printf("H5T_NATIVE_LLONG"); - } else if (H5Tequal(type, H5T_NATIVE_ULLONG)==TRUE) { - printf("H5T_NATIVE_ULLONG"); - } else { + switch(H5Tget_class(type)) { + case H5T_INTEGER: + if(H5Tequal(type, H5T_STD_I8BE) == TRUE) { + printf("H5T_STD_I8BE"); + } else if(H5Tequal(type, H5T_STD_I8LE) == TRUE) { + printf("H5T_STD_I8LE"); + } else if(H5Tequal(type, H5T_STD_I16BE) == TRUE) { + printf("H5T_STD_I16BE"); + } else if(H5Tequal(type, H5T_STD_I16LE) == TRUE) { + printf("H5T_STD_I16LE"); + } else if(H5Tequal(type, H5T_STD_I32BE) == TRUE) { + printf("H5T_STD_I32BE"); + } else if(H5Tequal(type, H5T_STD_I32LE) == TRUE) { + printf("H5T_STD_I32LE"); + } else if(H5Tequal(type, H5T_STD_I64BE) == TRUE) { + printf("H5T_STD_I64BE"); + } else if(H5Tequal(type, H5T_STD_I64LE) == TRUE) { + printf("H5T_STD_I64LE"); + } else if(H5Tequal(type, H5T_STD_U8BE) == TRUE) { + printf("H5T_STD_U8BE"); + } else if(H5Tequal(type, H5T_STD_U8LE) == TRUE) { + printf("H5T_STD_U8LE"); + } else if(H5Tequal(type, H5T_STD_U16BE) == TRUE) { + printf("H5T_STD_U16BE"); + } else if(H5Tequal(type, H5T_STD_U16LE) == TRUE) { + printf("H5T_STD_U16LE"); + } else if(H5Tequal(type, H5T_STD_U32BE) == TRUE) { + printf("H5T_STD_U32BE"); + } else if(H5Tequal(type, H5T_STD_U32LE) == TRUE) { + printf("H5T_STD_U32LE"); + } else if(H5Tequal(type, H5T_STD_U64BE) == TRUE) { + printf("H5T_STD_U64BE"); + } else if(H5Tequal(type, H5T_STD_U64LE) == TRUE) { + printf("H5T_STD_U64LE"); + } else if(H5Tequal(type, H5T_NATIVE_SCHAR) == TRUE) { + printf("H5T_NATIVE_SCHAR"); + } else if(H5Tequal(type, H5T_NATIVE_UCHAR) == TRUE) { + printf("H5T_NATIVE_UCHAR"); + } else if(H5Tequal(type, H5T_NATIVE_SHORT) == TRUE) { + printf("H5T_NATIVE_SHORT"); + } else if(H5Tequal(type, H5T_NATIVE_USHORT) == TRUE) { + printf("H5T_NATIVE_USHORT"); + } else if(H5Tequal(type, H5T_NATIVE_INT) == TRUE) { + printf("H5T_NATIVE_INT"); + } else if(H5Tequal(type, H5T_NATIVE_UINT) == TRUE) { + printf("H5T_NATIVE_UINT"); + } else if(H5Tequal(type, H5T_NATIVE_LONG) == TRUE) { + printf("H5T_NATIVE_LONG"); + } else if(H5Tequal(type, H5T_NATIVE_ULONG) == TRUE) { + printf("H5T_NATIVE_ULONG"); + } else if(H5Tequal(type, H5T_NATIVE_LLONG) == TRUE) { + printf("H5T_NATIVE_LLONG"); + } else if(H5Tequal(type, H5T_NATIVE_ULLONG) == TRUE) { + printf("H5T_NATIVE_ULLONG"); + } else { - /* byte order */ - if (H5Tget_size(type)>1) - { - order = H5Tget_order(type); - if (H5T_ORDER_LE==order) { - order_s = " little-endian"; - } else if (H5T_ORDER_BE==order) { - order_s = " big-endian"; - } else if (H5T_ORDER_VAX==order) { - order_s = " mixed-endian"; - } else { - order_s = " unknown-byte-order"; - } - } else { - order_s = ""; - } - - /* sign */ - if ((sign=H5Tget_sign(type))>=0) - { - if (H5T_SGN_NONE==sign) { - sign_s = " unsigned"; - } else if (H5T_SGN_2==sign) { - sign_s = ""; - } else { - sign_s = " unknown-sign"; - } - } else { - sign_s = " unknown-sign"; - } - - /* print size, order, and sign */ - printf("%lu-bit%s%s integer", - (unsigned long)(8*H5Tget_size(type)), order_s, sign_s); - } - break; + /* byte order */ + if(H5Tget_size(type)>1) { + order = H5Tget_order(type); + if (H5T_ORDER_LE == order) { + order_s = " little-endian"; + } else if (H5T_ORDER_BE == order) { + order_s = " big-endian"; + } else if (H5T_ORDER_VAX == order) { + order_s = " mixed-endian"; + } else { + order_s = " unknown-byte-order"; + } + } else { + order_s = ""; + } + + /* sign */ + if ((sign=H5Tget_sign(type))>=0) + { + if (H5T_SGN_NONE == sign) { + sign_s = " unsigned"; + } else if (H5T_SGN_2 == sign) { + sign_s = ""; + } else { + sign_s = " unknown-sign"; + } + } else { + sign_s = " unknown-sign"; + } + + /* print size, order, and sign */ + printf("%lu-bit%s%s integer", + (unsigned long)(8*H5Tget_size(type)), order_s, sign_s); + } + break; - case H5T_FLOAT: - if (H5Tequal(type, H5T_IEEE_F32BE)==TRUE) { - printf("H5T_IEEE_F32BE"); - } else if (H5Tequal(type, H5T_IEEE_F32LE)==TRUE) { - printf("H5T_IEEE_F32LE"); - } else if (H5Tequal(type, H5T_IEEE_F64BE)==TRUE) { - printf("H5T_IEEE_F64BE"); - } else if (H5Tequal(type, H5T_IEEE_F64LE)==TRUE) { - printf("H5T_IEEE_F64LE"); - } else if (H5Tequal(type, H5T_VAX_F32)==TRUE) { - printf("H5T_VAX_F32"); - } else if (H5Tequal(type, H5T_VAX_F64)==TRUE) { - printf("H5T_VAX_F64"); - } else if (H5Tequal(type, H5T_NATIVE_FLOAT)==TRUE) { - printf("H5T_NATIVE_FLOAT"); - } else if (H5Tequal(type, H5T_NATIVE_DOUBLE)==TRUE) { - printf("H5T_NATIVE_DOUBLE"); + case H5T_FLOAT: + if(H5Tequal(type, H5T_IEEE_F32BE) == TRUE) { + printf("H5T_IEEE_F32BE"); + } else if(H5Tequal(type, H5T_IEEE_F32LE) == TRUE) { + printf("H5T_IEEE_F32LE"); + } else if(H5Tequal(type, H5T_IEEE_F64BE) == TRUE) { + printf("H5T_IEEE_F64BE"); + } else if(H5Tequal(type, H5T_IEEE_F64LE) == TRUE) { + printf("H5T_IEEE_F64LE"); + } else if(H5Tequal(type, H5T_VAX_F32) == TRUE) { + printf("H5T_VAX_F32"); + } else if(H5Tequal(type, H5T_VAX_F64) == TRUE) { + printf("H5T_VAX_F64"); + } else if(H5Tequal(type, H5T_NATIVE_FLOAT) == TRUE) { + printf("H5T_NATIVE_FLOAT"); + } else if(H5Tequal(type, H5T_NATIVE_DOUBLE) == TRUE) { + printf("H5T_NATIVE_DOUBLE"); #if H5_SIZEOF_LONG_DOUBLE !=0 - } else if (H5Tequal(type, H5T_NATIVE_LDOUBLE)==TRUE) { - printf("H5T_NATIVE_LDOUBLE"); + } else if(H5Tequal(type, H5T_NATIVE_LDOUBLE) == TRUE) { + printf("H5T_NATIVE_LDOUBLE"); #endif - } else { - - /* byte order */ - if (H5Tget_size(type)>1) - { - order = H5Tget_order(type); - if (H5T_ORDER_LE==order) { - order_s = " little-endian"; - } else if (H5T_ORDER_BE==order) { - order_s = " big-endian"; - } else if (H5T_ORDER_VAX==order) { - order_s = " mixed-endian"; - } else { - order_s = " unknown-byte-order"; - } - } else { - order_s = ""; - } - - /* print size and byte order */ - printf("%lu-bit%s floating-point", - (unsigned long)(8*H5Tget_size(type)), order_s); + } else { - } - break; + /* byte order */ + if(H5Tget_size(type)>1) { + order = H5Tget_order(type); + if (H5T_ORDER_LE == order) { + order_s = " little-endian"; + } else if (H5T_ORDER_BE == order) { + order_s = " big-endian"; + } else if (H5T_ORDER_VAX == order) { + order_s = " mixed-endian"; + } else { + order_s = " unknown-byte-order"; + } + } else { + order_s = ""; + } - case H5T_TIME: - printf("H5T_TIME: not yet implemented"); - break; + /* print size and byte order */ + printf("%lu-bit%s floating-point", + (unsigned long)(8*H5Tget_size(type)), order_s); - case H5T_STRING: - /* Make a copy of type in memory in case when TYPE is on disk, the size - * will be bigger than in memory. This makes it easier to compare - * types in memory. */ - tmp_type = H5Tcopy(type); - size = H5Tget_size(tmp_type); - str_pad = H5Tget_strpad(tmp_type); - cset = H5Tget_cset(tmp_type); - is_vlstr = H5Tis_variable_str(tmp_type); - - printf("H5T_STRING %s\n", dump_header_format->strblockbegin); - indent += COL; + } + break; - indentation(indent + COL); - if(is_vlstr) - printf("%s H5T_VARIABLE;\n", STRSIZE); - else - printf("%s %d;\n", STRSIZE, (int) size); + case H5T_TIME: + printf("H5T_TIME: not yet implemented"); + break; - indentation(indent + COL); - printf("%s ", STRPAD); - if (str_pad == H5T_STR_NULLTERM) - printf("H5T_STR_NULLTERM;\n"); - else if (str_pad == H5T_STR_NULLPAD) - printf("H5T_STR_NULLPAD;\n"); - else if (str_pad == H5T_STR_SPACEPAD) - printf("H5T_STR_SPACEPAD;\n"); - else - printf("H5T_STR_ERROR;\n"); + case H5T_STRING: + /* Make a copy of type in memory in case when TYPE is on disk, the size + * will be bigger than in memory. This makes it easier to compare + * types in memory. */ + tmp_type = H5Tcopy(type); + size = H5Tget_size(tmp_type); + str_pad = H5Tget_strpad(tmp_type); + cset = H5Tget_cset(tmp_type); + is_vlstr = H5Tis_variable_str(tmp_type); + + printf("H5T_STRING %s\n", dump_header_format->strblockbegin); + indent += COL; - indentation(indent + COL); - printf("%s ", CSET); + indentation(indent + COL); + if(is_vlstr) + printf("%s H5T_VARIABLE;\n", STRSIZE); + else + printf("%s %d;\n", STRSIZE, (int) size); - if (cset == H5T_CSET_ASCII) - printf("H5T_CSET_ASCII;\n"); - else - printf("unknown_cset;\n"); + indentation(indent + COL); + printf("%s ", STRPAD); + if (str_pad == H5T_STR_NULLTERM) + printf("H5T_STR_NULLTERM;\n"); + else if (str_pad == H5T_STR_NULLPAD) + printf("H5T_STR_NULLPAD;\n"); + else if (str_pad == H5T_STR_SPACEPAD) + printf("H5T_STR_SPACEPAD;\n"); + else + printf("H5T_STR_ERROR;\n"); - str_type = H5Tcopy(H5T_C_S1); - if(is_vlstr) - H5Tset_size(str_type, H5T_VARIABLE); - else - H5Tset_size(str_type, size); - H5Tset_cset(str_type, cset); - H5Tset_strpad(str_type, str_pad); + indentation(indent + COL); + printf("%s ", CSET); - indentation(indent + COL); - printf("%s ", CTYPE); + if (cset == H5T_CSET_ASCII) + printf("H5T_CSET_ASCII;\n"); + else + printf("unknown_cset;\n"); - /* Check C variable-length string first. Are the two types equal? */ - if (H5Tequal(tmp_type, str_type)) { - printf("H5T_C_S1;\n"); - goto done; - } + str_type = H5Tcopy(H5T_C_S1); + if(is_vlstr) + H5Tset_size(str_type, H5T_VARIABLE); + else + H5Tset_size(str_type, size); + H5Tset_cset(str_type, cset); + H5Tset_strpad(str_type, str_pad); - /* Change the endianness and see if they're equal. */ - order = H5Tget_order(tmp_type); - if(order==H5T_ORDER_LE) - H5Tset_order(str_type, H5T_ORDER_LE); - else if(order==H5T_ORDER_BE) - H5Tset_order(str_type, H5T_ORDER_BE); + indentation(indent + COL); + printf("%s ", CTYPE); - if (H5Tequal(tmp_type, str_type)) { - printf("H5T_C_S1;\n"); - goto done; - } + /* Check C variable-length string first. Are the two types equal? */ + if (H5Tequal(tmp_type, str_type)) { + printf("H5T_C_S1;\n"); + goto done; + } - /* If not equal to C variable-length string, check Fortran type. */ - H5Tclose(str_type); - str_type = H5Tcopy(H5T_FORTRAN_S1); - H5Tset_cset(str_type, cset); - H5Tset_size(str_type, size); - H5Tset_strpad(str_type, str_pad); - - /* Are the two types equal? */ - if (H5Tequal(tmp_type, str_type)) { - printf("H5T_FORTRAN_S1;\n"); - goto done; - } + /* Change the endianness and see if they're equal. */ + order = H5Tget_order(tmp_type); + if(order==H5T_ORDER_LE) + H5Tset_order(str_type, H5T_ORDER_LE); + else if(order==H5T_ORDER_BE) + H5Tset_order(str_type, H5T_ORDER_BE); - /* Change the endianness and see if they're equal. */ - order = H5Tget_order(tmp_type); - if(order==H5T_ORDER_LE) - H5Tset_order(str_type, H5T_ORDER_LE); - else if(order==H5T_ORDER_BE) - H5Tset_order(str_type, H5T_ORDER_BE); + if (H5Tequal(tmp_type, str_type)) { + printf("H5T_C_S1;\n"); + goto done; + } - if (H5Tequal(tmp_type, str_type)) { - printf("H5T_FORTRAN_S1;\n"); - goto done; - } + /* If not equal to C variable-length string, check Fortran type. */ + H5Tclose(str_type); + str_type = H5Tcopy(H5T_FORTRAN_S1); + H5Tset_cset(str_type, cset); + H5Tset_size(str_type, size); + H5Tset_strpad(str_type, str_pad); - /* Type doesn't match any of above. */ - printf("unknown_one_character_type;\n "); - d_status = EXIT_FAILURE; + /* Are the two types equal? */ + if (H5Tequal(tmp_type, str_type)) { + printf("H5T_FORTRAN_S1;\n"); + goto done; + } -done: - H5Tclose(str_type); - H5Tclose(tmp_type); + /* Change the endianness and see if they're equal. */ + order = H5Tget_order(tmp_type); + if(order==H5T_ORDER_LE) + H5Tset_order(str_type, H5T_ORDER_LE); + else if(order==H5T_ORDER_BE) + H5Tset_order(str_type, H5T_ORDER_BE); - indent -= COL; - indentation(indent + COL); - printf("%s", dump_header_format->strblockend); - break; + if (H5Tequal(tmp_type, str_type)) { + printf("H5T_FORTRAN_S1;\n"); + goto done; + } - case H5T_BITFIELD: - if (H5Tequal(type, H5T_STD_B8BE)==TRUE) { - printf("H5T_STD_B8BE"); - } else if (H5Tequal(type, H5T_STD_B8LE)==TRUE) { - printf("H5T_STD_B8LE"); - } else if (H5Tequal(type, H5T_STD_B16BE)==TRUE) { - printf("H5T_STD_B16BE"); - } else if (H5Tequal(type, H5T_STD_B16LE)==TRUE) { - printf("H5T_STD_B16LE"); - } else if (H5Tequal(type, H5T_STD_B32BE)==TRUE) { - printf("H5T_STD_B32BE"); - } else if (H5Tequal(type, H5T_STD_B32LE)==TRUE) { - printf("H5T_STD_B32LE"); - } else if (H5Tequal(type, H5T_STD_B64BE)==TRUE) { - printf("H5T_STD_B64BE"); - } else if (H5Tequal(type, H5T_STD_B64LE)==TRUE) { - printf("H5T_STD_B64LE"); - } else { - printf("undefined bitfield"); + /* Type doesn't match any of above. */ + printf("unknown_one_character_type;\n "); d_status = EXIT_FAILURE; - } - break; - case H5T_OPAQUE: - printf("\n"); - indentation(indent + COL); - printf("H5T_OPAQUE;\n"); - indentation(indent + COL); - printf("OPAQUE_TAG \"%s\";\n", H5Tget_tag(type)); - indentation(indent); - break; + done: + H5Tclose(str_type); + H5Tclose(tmp_type); + + indent -= COL; + indentation(indent + COL); + printf("%s", dump_header_format->strblockend); + break; - case H5T_COMPOUND: - nmembers = H5Tget_nmembers(type); - printf("H5T_COMPOUND %s\n", dump_header_format->structblockbegin); + case H5T_BITFIELD: + if (H5Tequal(type, H5T_STD_B8BE)==TRUE) { + printf("H5T_STD_B8BE"); + } else if (H5Tequal(type, H5T_STD_B8LE)==TRUE) { + printf("H5T_STD_B8LE"); + } else if (H5Tequal(type, H5T_STD_B16BE)==TRUE) { + printf("H5T_STD_B16BE"); + } else if (H5Tequal(type, H5T_STD_B16LE)==TRUE) { + printf("H5T_STD_B16LE"); + } else if (H5Tequal(type, H5T_STD_B32BE)==TRUE) { + printf("H5T_STD_B32BE"); + } else if (H5Tequal(type, H5T_STD_B32LE)==TRUE) { + printf("H5T_STD_B32LE"); + } else if (H5Tequal(type, H5T_STD_B64BE)==TRUE) { + printf("H5T_STD_B64BE"); + } else if (H5Tequal(type, H5T_STD_B64LE)==TRUE) { + printf("H5T_STD_B64LE"); + } else { + printf("undefined bitfield"); + d_status = EXIT_FAILURE; + } + break; - for (i = 0; i < nmembers; i++) { - mname = H5Tget_member_name(type, i); - mtype = H5Tget_member_type(type, i); + case H5T_OPAQUE: + printf("\n"); + indentation(indent + COL); + printf("H5T_OPAQUE;\n"); indentation(indent + COL); + printf("OPAQUE_TAG \"%s\";\n", H5Tget_tag(type)); + indentation(indent); + break; - if (H5Tget_class(mtype) == H5T_COMPOUND) - indent += COL; + case H5T_COMPOUND: + nmembers = H5Tget_nmembers(type); + printf("H5T_COMPOUND %s\n", dump_header_format->structblockbegin); - print_datatype(mtype,0); + for (i = 0; i < nmembers; i++) { + mname = H5Tget_member_name(type, i); + mtype = H5Tget_member_type(type, i); + indentation(indent + COL); - if (H5Tget_class(mtype) == H5T_COMPOUND) - indent -= COL; + if (H5Tget_class(mtype) == H5T_COMPOUND) + indent += COL; - printf(" \"%s\";\n", mname); - free(mname); - } + print_datatype(mtype,0); - indentation(indent); - printf("%s", dump_header_format->structblockend); - break; + if (H5Tget_class(mtype) == H5T_COMPOUND) + indent -= COL; - case H5T_REFERENCE: - printf("H5T_REFERENCE"); - break; + printf(" \"%s\";\n", mname); + free(mname); + } - case H5T_ENUM: - printf("H5T_ENUM %s\n", dump_header_format->enumblockbegin); - indent += COL; - indentation(indent + COL); - super = H5Tget_super(type); - print_datatype(super,0); - printf(";\n"); - print_enum(type); - indent -= COL; - indentation(indent + COL); - printf("%s", dump_header_format->enumblockend); - break; + indentation(indent); + printf("%s", dump_header_format->structblockend); + break; - case H5T_VLEN: - printf("H5T_VLEN %s ", dump_header_format->vlenblockbegin); - super = H5Tget_super(type); - print_datatype(super,0); - H5Tclose(super); + case H5T_REFERENCE: + printf("H5T_REFERENCE"); + break; - /* Print closing */ - printf("%s", dump_header_format->vlenblockend); - break; + case H5T_ENUM: + printf("H5T_ENUM %s\n", dump_header_format->enumblockbegin); + indent += COL; + indentation(indent + COL); + super = H5Tget_super(type); + print_datatype(super,0); + printf(";\n"); + print_enum(type); + indent -= COL; + indentation(indent + COL); + printf("%s", dump_header_format->enumblockend); + break; - case H5T_ARRAY: - /* Get array base type */ - super = H5Tget_super(type); + case H5T_VLEN: + printf("H5T_VLEN %s ", dump_header_format->vlenblockbegin); + super = H5Tget_super(type); + print_datatype(super,0); + H5Tclose(super); - /* Print lead-in */ - printf("H5T_ARRAY { "); + /* Print closing */ + printf("%s", dump_header_format->vlenblockend); + break; - /* Get array information */ - ndims = H5Tget_array_ndims(type); - H5Tget_array_dims(type, dims, NULL); + case H5T_ARRAY: + /* Get array base type */ + super = H5Tget_super(type); - /* Print array dimensions */ - for (i = 0; i < ndims; i++) - printf("[%d]", (int) dims[i]); + /* Print lead-in */ + printf("H5T_ARRAY { "); - printf(" "); + /* Get array information */ + ndims = H5Tget_array_ndims(type); + H5Tget_array_dims(type, dims, NULL); - /* Print base type */ - print_datatype(super,0); + /* Print array dimensions */ + for (i = 0; i < ndims; i++) + printf("[%d]", (int) dims[i]); - /* Close array base type */ - H5Tclose(super); + printf(" "); - /* Print closing */ - printf(" }"); + /* Print base type */ + print_datatype(super,0); - break; + /* Close array base type */ + H5Tclose(super); - default: - printf("unknown data type"); - d_status = EXIT_FAILURE; - break; + /* Print closing */ + printf(" }"); + + break; + + default: + printf("unknown datatype"); + d_status = EXIT_FAILURE; + break; } } /* end else */ } @@ -1097,8 +1093,8 @@ done: /*------------------------------------------------------------------------- * Function: dump_datatype * - * Purpose: Dump the data type. Data type can be HDF5 predefined - * atomic data type or committed/transient data type. + * Purpose: Dump the datatype. Datatype can be HDF5 predefined + * atomic datatype or committed/transient datatype. * * Return: void * @@ -1127,7 +1123,7 @@ dump_datatype(hid_t type) /*------------------------------------------------------------------------- * Function: dump_dataspace * - * Purpose: Dump the data space. Data space can be named data space, + * Purpose: Dump the dataspace. Dataspace can be named dataspace, * array, or others. * * Return: void @@ -1150,49 +1146,52 @@ dump_dataspace(hid_t space) indentation(indent + COL); printf("%s ", dump_header_format->dataspacebegin); - switch (space_type) { + switch(space_type) { case H5S_SCALAR: - /* scalar dataspace */ - HDfprintf(stdout, "%s %s", - dump_header_format->dataspacedescriptionbegin, S_SCALAR); + /* scalar dataspace */ + HDfprintf(stdout, "%s %s", + dump_header_format->dataspacedescriptionbegin, S_SCALAR); break; + case H5S_SIMPLE: - /* simple dataspace */ - HDfprintf(stdout, "%s %s { %s %Hu", - dump_header_format->dataspacedescriptionbegin, S_SIMPLE, - dump_header_format->dataspacedimbegin, size[0]); + /* simple dataspace */ + HDfprintf(stdout, "%s %s { %s %Hu", + dump_header_format->dataspacedescriptionbegin, S_SIMPLE, + dump_header_format->dataspacedimbegin, size[0]); - for (i = 1; i < ndims; i++) - HDfprintf(stdout, ", %Hu", size[i]); + for(i = 1; i < ndims; i++) + HDfprintf(stdout, ", %Hu", size[i]); - printf(" %s / ", dump_header_format->dataspacedimend); + printf(" %s / ", dump_header_format->dataspacedimend); - if (maxsize[0] == H5S_UNLIMITED) - HDfprintf(stdout, "%s %s", - dump_header_format->dataspacedimbegin, - "H5S_UNLIMITED"); - else - HDfprintf(stdout, "%s %Hu", - dump_header_format->dataspacedimbegin, maxsize[0]); + if(maxsize[0] == H5S_UNLIMITED) + HDfprintf(stdout, "%s %s", + dump_header_format->dataspacedimbegin, + "H5S_UNLIMITED"); + else + HDfprintf(stdout, "%s %Hu", + dump_header_format->dataspacedimbegin, maxsize[0]); - for (i = 1; i < ndims; i++) - if (maxsize[i] == H5S_UNLIMITED) - HDfprintf(stdout, ", %s", "H5S_UNLIMITED"); - else - HDfprintf(stdout, ", %Hu", maxsize[i]); + for(i = 1; i < ndims; i++) + if(maxsize[i] == H5S_UNLIMITED) + HDfprintf(stdout, ", %s", "H5S_UNLIMITED"); + else + HDfprintf(stdout, ", %Hu", maxsize[i]); - printf(" %s }", dump_header_format->dataspacedimend); + printf(" %s }", dump_header_format->dataspacedimend); + break; - break; case H5S_NULL: - /* null dataspace */ - HDfprintf(stdout, "%s %s", - dump_header_format->dataspacedescriptionbegin, S_NULL); + /* null dataspace */ + HDfprintf(stdout, "%s %s", + dump_header_format->dataspacedescriptionbegin, S_NULL); break; + case H5S_NO_CLASS: default: - printf("%s unknown dataspace %s\n", BEGIN, END); - } + printf("%s unknown dataspace %s\n", BEGIN, END); + break; + } /* end switch */ end_obj(dump_header_format->dataspaceend, dump_header_format->dataspaceblockend); @@ -1214,41 +1213,44 @@ dump_dataspace(hid_t space) *------------------------------------------------------------------------- */ static herr_t -dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) +dump_attr(hid_t oid, const char *attr_name, void UNUSED * op_data) { - hid_t attr_id, type, space; + hid_t attr_id; herr_t ret = SUCCEED; indentation(indent); begin_obj(dump_header_format->attributebegin, attr_name, dump_header_format->attributeblockbegin); - if ((attr_id = H5Aopen_name(attr, attr_name)) < 0) { - indentation(indent + COL); + if((attr_id = H5Aopen_name(oid, attr_name)) < 0) { + indentation(indent + COL); error_msg(progname, "unable to open attribute \"%s\"\n", attr_name); - indentation(indent); - end_obj(dump_header_format->attributeend, - dump_header_format->attributeblockend); - d_status = EXIT_FAILURE; - ret = FAIL; + indentation(indent); + end_obj(dump_header_format->attributeend, + dump_header_format->attributeblockend); + d_status = EXIT_FAILURE; + ret = FAIL; } else { - type = H5Aget_type(attr_id); - space = H5Aget_space(attr_id); - dump_datatype(type); - dump_dataspace(space); + hid_t type, space; - if (display_oid) - dump_oid(attr_id); + type = H5Aget_type(attr_id); + space = H5Aget_space(attr_id); + dump_datatype(type); + dump_dataspace(space); - if (display_data || display_attr_data) - dump_data(attr_id, ATTRIBUTE_DATA, NULL, display_ai); + if(display_oid) + dump_oid(attr_id); - H5Tclose(type); - H5Sclose(space); - H5Aclose(attr_id); - indentation(indent); - end_obj(dump_header_format->attributeend, - dump_header_format->attributeblockend); + if(display_data || display_attr_data) + dump_data(attr_id, ATTRIBUTE_DATA, NULL, display_ai); + + H5Tclose(type); + H5Sclose(space); + H5Aclose(attr_id); + + indentation(indent); + end_obj(dump_header_format->attributeend, + dump_header_format->attributeblockend); } return ret; @@ -1272,72 +1274,42 @@ dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) static herr_t dump_selected_attr(hid_t loc_id, const char *name) { - int j; + hid_t oid, attr_id; char *obj_name; const char *attr_name; - hid_t oid, attr_id, type, space; - H5G_stat_t statbuf; + int j; - j = (int)strlen(name) - 1; - obj_name = malloc((size_t)j + 2); + j = (int)HDstrlen(name) - 1; + obj_name = HDmalloc((size_t)j + 2); /* find the last / */ - while (name[j] != '/' && j >= 0) - j--; + while(name[j] != '/' && j >= 0) + j--; /* object name */ - if (j == -1) { - strcpy(obj_name, "/"); - } else { - strncpy(obj_name, name, (size_t)j + 1); + if(j == -1) + HDstrcpy(obj_name, "/"); + else { + HDstrncpy(obj_name, name, (size_t)j + 1); obj_name[j + 1] = '\0'; - } + } /* end else */ attr_name = name + j + 1; begin_obj(dump_header_format->attributebegin, name, dump_header_format->attributeblockbegin); - H5Gget_objinfo(loc_id, obj_name, FALSE, &statbuf); - - switch(statbuf.type) { - case H5G_GROUP: - if((oid = H5Gopen2(loc_id, obj_name, H5P_DEFAULT)) < 0) { - indentation(COL); - error_msg(progname, "unable to open group \"%s\"\n", obj_name); - end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); - d_status = EXIT_FAILURE; - return FAIL; - } /* end if */ - break; - - case H5G_DATASET: - if((oid = H5Dopen(loc_id, obj_name)) < 0) { - indentation(COL); - error_msg(progname, "unable to open dataset \"%s\"\n", obj_name); - end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); - d_status = EXIT_FAILURE; - return FAIL; - } /* end if */ - break; - case H5G_TYPE: - if((oid = H5Topen(loc_id, obj_name)) < 0) { - indentation(COL); - error_msg(progname, "unable to open datatype \"%s\"\n", obj_name); - end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); - d_status = EXIT_FAILURE; - return FAIL; - } /* end if */ - break; - - default: - indentation(COL); - error_msg(progname, "unable to open unknown \"%s\"\n", obj_name); - end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); - d_status = EXIT_FAILURE; - return FAIL; - } /* end switch */ + /* Open the object with the attribute */ + if((oid = H5Oopen(loc_id, obj_name, H5P_DEFAULT)) < 0) { + indentation(COL); + error_msg(progname, "unable to open object \"%s\"\n", obj_name); + end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); + d_status = EXIT_FAILURE; + return FAIL; + } /* end if */ if((attr_id = H5Aopen_name(oid, attr_name)) >= 0) { + hid_t type, space; + type = H5Aget_type(attr_id); space = H5Aget_space(attr_id); dump_datatype(type); @@ -1361,34 +1333,13 @@ dump_selected_attr(hid_t loc_id, const char *name) d_status = EXIT_FAILURE; } - switch(statbuf.type) { - case H5G_GROUP: - if(H5Gclose(oid) < 0) { - d_status = EXIT_FAILURE; - return FAIL; - } /* end if */ - break; - - case H5G_DATASET: - if(H5Dclose(oid) < 0) { - d_status = EXIT_FAILURE; - return FAIL; - } /* end if */ - break; - - case H5G_TYPE: - if(H5Tclose(oid) < 0) { - d_status = EXIT_FAILURE; - return FAIL; - } /* end if */ - break; - - default: - d_status = EXIT_FAILURE; - return FAIL; - } /* end switch */ + /* Close object */ + if(H5Oclose(oid) < 0) { + d_status = EXIT_FAILURE; + return FAIL; + } /* end if */ - free(obj_name); + HDfree(obj_name); return SUCCEED; } @@ -1411,24 +1362,12 @@ dump_selected_attr(hid_t loc_id, const char *name) *------------------------------------------------------------------------- */ static herr_t -dump_all(hid_t group, const char *name, const H5L_info_t *linfo, void * op_data) +dump_all(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED *op_data) { hid_t obj; char *obj_path = NULL; /* Full path of object */ - H5G_stat_t statbuf; herr_t ret = SUCCEED; - /* Stat the object */ - if(H5Gget_objinfo(group, name, FALSE, &statbuf) < 0) { - error_msg(progname, "unable to get object information for \"%s\"\n", name); - d_status = EXIT_FAILURE; - ret = FAIL; - goto done; - } /* end if */ - - if (*(int *)op_data != H5G_UNKNOWN && statbuf.type != *(int *) op_data) - goto done; - /* Build the object's path name */ obj_path = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); HDassert(obj_path); @@ -1436,356 +1375,359 @@ dump_all(hid_t group, const char *name, const H5L_info_t *linfo, void * op_data) HDstrcat(obj_path, "/"); HDstrcat(obj_path, name); - switch (statbuf.type) { - case H5G_LINK: - { - char *targbuf; - - indentation(indent); - targbuf = HDmalloc(statbuf.linklen); - HDassert(targbuf); + if(linfo->type == H5L_TYPE_HARD) { + H5O_info_t oinfo; - if (!doxml) { - begin_obj(dump_header_format->softlinkbegin, name, - dump_header_format->softlinkblockbegin); - indentation(indent + COL); - } + /* Stat the object */ + if(H5Oget_info(group, name, &oinfo, H5P_DEFAULT) < 0) { + error_msg(progname, "unable to get object information for \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + goto done; + } /* end if */ - if (H5Lget_val(group, name, targbuf, statbuf.linklen, H5P_DEFAULT) < 0) { - error_msg(progname, "unable to get link value\n"); - d_status = EXIT_FAILURE; - ret = FAIL; - } else { - /* print the value of a soft link */ - if (!doxml) { - /* Standard DDL: no modification */ - printf("LINKTARGET \"%s\"\n", targbuf); + switch(oinfo.type) { + case H5O_TYPE_GROUP: + if((obj = H5Gopen2(group, name, H5P_DEFAULT)) < 0) { + error_msg(progname, "unable to dump group \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; } else { - /* XML */ - char linkxid[100]; - char parentxid[100]; - char targetxid[100]; - char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); - char *t_name = xml_escape_the_name(name); - char *t_targbuf = xml_escape_the_name(targbuf); - char *t_obj_path = xml_escape_the_name(obj_path); - char *t_link_path; - int res; + char *old_prefix; /* Pointer to previous prefix */ - t_link_path = HDmalloc(HDstrlen(prefix) + statbuf.linklen + 1); - if(targbuf[0] == '/') - HDstrcpy(t_link_path, targbuf); - else { - HDstrcpy(t_link_path, prefix); - HDstrcat(HDstrcat(t_link_path, "/"), targbuf); - } /* end else */ + /* Keep copy of prefix before iterating into group */ + old_prefix = HDstrdup(prefix); + HDassert(old_prefix); - /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1); - xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); + /* Append group name to prefix */ + add_prefix(&prefix, &prefix_len, name); - /* Try to create an OBJ-XID for the object pointed to */ - res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0); - if (res == 0) { - /* target obj found */ - printf("<%sSoftLink LinkName=\"%s\" " - "OBJ-XID=\"%s\" " - "H5SourcePath=\"%s\" " - "TargetPath=\"%s\" TargetObj=\"%s\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", - xmlnsprefix, - t_name, /* LinkName */ - linkxid, /* OBJ-XID */ - t_obj_path, /* H5SourcePath */ - t_targbuf, /* TargetPath */ - targetxid, /* TargetObj */ - parentxid, /* Parents */ - t_prefix); /* H5ParentPaths */ - } else { - /* dangling link -- omit from xml attributes */ - printf("<%sSoftLink LinkName=\"%s\" " - "OBJ-XID=\"%s\" " - "H5SourcePath=\"%s\" " - "TargetPath=\"%s\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", - xmlnsprefix, - t_name, /* LinkName */ - linkxid, /* OBJ-XID */ - t_obj_path, /* H5SourcePath */ - t_targbuf, /* TargetPath */ - parentxid, /* Parents */ - t_prefix); /* H5ParentPaths */ - } - - HDfree(t_prefix); - HDfree(t_name); - HDfree(t_targbuf); - HDfree(t_obj_path); - HDfree(t_link_path); - } - } + /* Iterate into group */ + dump_function_table->dump_group_function(obj, name); - if (!doxml) { - indentation(indent); - end_obj(dump_header_format->softlinkend, - dump_header_format->softlinkblockend); - } + /* Restore old prefix name */ + HDstrcpy(prefix, old_prefix); + HDfree(old_prefix); - HDfree(targbuf); - break; - } + /* Close group */ + H5Gclose(obj); + } + break; - case H5G_UDLINK: - indentation(indent); - switch(linfo->type) { - case H5L_TYPE_EXTERNAL: - { - char *targbuf; + case H5O_TYPE_DATASET: + if((obj = H5Dopen(group, name)) >= 0) { + if(oinfo.rc > 1) { + obj_t *found_obj; /* Found object */ - targbuf = HDmalloc(statbuf.linklen); - HDassert(targbuf); - if(!doxml) - begin_obj(dump_header_format->extlinkbegin, name, dump_header_format->extlinkblockbegin); + found_obj = search_obj(dset_table, oinfo.addr); - if(H5Lget_val(group, name, targbuf, statbuf.linklen, H5P_DEFAULT) < 0) { - error_msg(progname, "unable to get external link value\n"); - d_status = EXIT_FAILURE; - ret = FAIL; - } else { - const char *filename; - const char *targname; + if(found_obj == NULL) { + indentation(indent); + begin_obj(dump_header_format->datasetbegin, name, + dump_header_format->datasetblockbegin); + indentation(indent + COL); + error_msg(progname, + "internal error (file %s:line %d)\n", + __FILE__, __LINE__); + indentation(indent); + end_obj(dump_header_format->datasetend, + dump_header_format->datasetblockend); + d_status = EXIT_FAILURE; + ret = FAIL; + H5Dclose(obj); + goto done; + } else if(found_obj->displayed) { + indentation(indent); - if(H5Lunpack_elink_val(targbuf, statbuf.linklen, NULL, &filename, &targname) < 0) { - error_msg(progname, "unable to unpack external link value\n"); - d_status = EXIT_FAILURE; - ret = FAIL; - } else { - if (!doxml) { + if(!doxml) { + begin_obj(dump_header_format->datasetbegin, name, + dump_header_format->datasetblockbegin); indentation(indent + COL); - printf("LINKCLASS %d\n", linfo->type); - indentation(indent + COL); - printf("TARGETFILE \"%s\"\n", filename); - indentation(indent + COL); - printf("TARGETPATH \"%s\"\n", targname); - } - /* XML */ - else { - char linkxid[100]; - char parentxid[100]; - char *t_name = xml_escape_the_name(name); - char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + printf("%s \"%s\"\n", HARDLINK, found_obj->objname); + indentation(indent); + end_obj(dump_header_format->datasetend, + dump_header_format->datasetblockend); + } else { + /* the XML version */ char *t_obj_path = xml_escape_the_name(obj_path); - char *t_filename = xml_escape_the_name(filename); - char *t_targname = xml_escape_the_name(targname); + char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + char *t_name = xml_escape_the_name(name); + char dsetxid[100]; + char parentxid[100]; + char pointerxid[100]; /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1); + xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1); xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); - printf("<%sExternalLink LinkName=\"%s\" " - "OBJ-XID=\"%s\" " - "H5SourcePath=\"%s\" " - "TargetFilename=\"%s\" " - "TargetPath=\"%s\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", - xmlnsprefix, - t_name, /* LinkName */ - linkxid, /* OBJ-XID */ - t_obj_path, /* H5SourcePath */ - filename, /* TargetFilename */ - targname, /* TargetPath*/ - parentxid, /* Parents */ - t_prefix); /* H5ParentPaths */ - HDfree(t_prefix); + printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" " + "H5Path=\"%s\" Parents=\"%s\" " + "H5ParentPaths=\"%s\">\n", + xmlnsprefix, + t_name, /* Dataset Name */ + dsetxid, get_next_xid(), /* OBJ-XID */ + t_obj_path, /* H5Path */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + + indentation(indent + COL); + xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1); + printf("<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n", + xmlnsprefix, + pointerxid,t_obj_path); + indentation(indent); + printf("</%sDataset>\n", xmlnsprefix); + HDfree(t_name); - HDfree(t_filename); - HDfree(t_targname); HDfree(t_obj_path); + HDfree(t_prefix); } + + H5Dclose(obj); + goto done; + } else { + found_obj->displayed = TRUE; } - } - if (!doxml) - end_obj(dump_header_format->extlinkend, dump_header_format->extlinkblockend); - HDfree(targbuf); - } - break; + } /* end if */ - default: - if (!doxml) { - begin_obj(dump_header_format->udlinkbegin, name, dump_header_format->udlinkblockbegin); - indentation(indent + COL); - } - if (!doxml) - printf("LINKCLASS %d\n", linfo->type); - else /* XML */ - { - char linkxid[100]; - char parentxid[100]; - char *t_name = xml_escape_the_name(name); - char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); - char *t_obj_path = xml_escape_the_name(obj_path); - - /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1); - xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); - - printf("<%sUserDefined LinkName=\"%s\" " - "OBJ-XID=\"%s\" " - "H5SourcePath=\"%s\" " - "LinkClass=\"%d\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", - xmlnsprefix, - t_name, /* LinkName */ - linkxid, /* OBJ-XID */ - t_obj_path, /* H5SourcePath */ - linfo->type, /* LinkClass */ - parentxid, /* Parents */ - t_prefix); /* H5ParentPaths */ - HDfree(t_prefix); - HDfree(t_name); - HDfree(t_obj_path); - } - if (!doxml) { - indentation(indent); - end_obj(dump_header_format->udlinkend, dump_header_format->udlinkblockend); - } - } - break; + dump_function_table->dump_dataset_function(obj, name, NULL); + H5Dclose(obj); + } else { + error_msg(progname, "unable to dump dataset \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + } + break; + + case H5O_TYPE_NAMED_DATATYPE: + if((obj = H5Topen(group, name)) < 0) { + error_msg(progname, "unable to dump datatype \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { + dump_function_table->dump_named_datatype_function(obj, name); + H5Tclose(obj); + } + break; - case H5G_GROUP: - if((obj = H5Gopen2(group, name, H5P_DEFAULT)) < 0) { - error_msg(progname, "unable to dump group \"%s\"\n", name); + default: + error_msg(progname, "unknown object \"%s\"\n", name); d_status = EXIT_FAILURE; ret = FAIL; - } else { - char *old_prefix; /* Pointer to previous prefix */ + } + } /* end if */ + else { + char *targbuf; - /* Keep copy of prefix before iterating into group */ - old_prefix = HDstrdup(prefix); - HDassert(old_prefix); + switch(linfo->type) { + case H5L_TYPE_SOFT: + indentation(indent); + targbuf = HDmalloc(linfo->u.val_size); + HDassert(targbuf); - /* Append group name to prefix */ - add_prefix(&prefix, &prefix_len, name); + if(!doxml) { + begin_obj(dump_header_format->softlinkbegin, name, + dump_header_format->softlinkblockbegin); + indentation(indent + COL); + } - /* Iterate into group */ - dump_function_table->dump_group_function(obj, name); + if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) { + error_msg(progname, "unable to get link value\n"); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { + /* print the value of a soft link */ + if (!doxml) { + /* Standard DDL: no modification */ + printf("LINKTARGET \"%s\"\n", targbuf); + } else { + /* XML */ + char linkxid[100]; + char parentxid[100]; + char targetxid[100]; + char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + char *t_name = xml_escape_the_name(name); + char *t_targbuf = xml_escape_the_name(targbuf); + char *t_obj_path = xml_escape_the_name(obj_path); + char *t_link_path; + int res; + + t_link_path = HDmalloc(HDstrlen(prefix) + linfo->u.val_size + 1); + if(targbuf[0] == '/') + HDstrcpy(t_link_path, targbuf); + else { + HDstrcpy(t_link_path, prefix); + HDstrcat(HDstrcat(t_link_path, "/"), targbuf); + } /* end else */ + + /* Create OBJ-XIDs for the parent and object */ + xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1); + xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); + + /* Try to create an OBJ-XID for the object pointed to */ + res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0); + if (res == 0) { + /* target obj found */ + printf("<%sSoftLink LinkName=\"%s\" " + "OBJ-XID=\"%s\" " + "H5SourcePath=\"%s\" " + "TargetPath=\"%s\" TargetObj=\"%s\" " + "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", + xmlnsprefix, + t_name, /* LinkName */ + linkxid, /* OBJ-XID */ + t_obj_path, /* H5SourcePath */ + t_targbuf, /* TargetPath */ + targetxid, /* TargetObj */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + } else { + /* dangling link -- omit from xml attributes */ + printf("<%sSoftLink LinkName=\"%s\" " + "OBJ-XID=\"%s\" " + "H5SourcePath=\"%s\" " + "TargetPath=\"%s\" " + "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", + xmlnsprefix, + t_name, /* LinkName */ + linkxid, /* OBJ-XID */ + t_obj_path, /* H5SourcePath */ + t_targbuf, /* TargetPath */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + } - /* Restore old prefix name */ - HDstrcpy(prefix, old_prefix); - HDfree(old_prefix); + HDfree(t_prefix); + HDfree(t_name); + HDfree(t_targbuf); + HDfree(t_obj_path); + HDfree(t_link_path); + } + } - /* Close group */ - H5Gclose(obj); - } - break; + if (!doxml) { + indentation(indent); + end_obj(dump_header_format->softlinkend, + dump_header_format->softlinkblockend); + } - case H5G_DATASET: - if ((obj = H5Dopen(group, name)) >= 0) { - haddr_t objno; /* Compact form of object's location */ + HDfree(targbuf); + break; - /* hard link */ - H5Gget_objinfo(obj, ".", TRUE, &statbuf); - objno = (haddr_t)statbuf.objno[0] | ((haddr_t)statbuf.objno[1] << (8 * sizeof(long))); + case H5L_TYPE_EXTERNAL: + targbuf = HDmalloc(linfo->u.val_size); + HDassert(targbuf); - if (statbuf.nlink > 1) { - obj_t *found_obj; /* Found object */ + indentation(indent); + if(!doxml) + begin_obj(dump_header_format->extlinkbegin, name, dump_header_format->extlinkblockbegin); - found_obj = search_obj(dset_table, objno); + if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) { + error_msg(progname, "unable to get external link value\n"); + d_status = EXIT_FAILURE; + ret = FAIL; + } /* end if */ + else { + const char *filename; + const char *targname; - if (found_obj == NULL) { - indentation(indent); - begin_obj(dump_header_format->datasetbegin, name, - dump_header_format->datasetblockbegin); - indentation(indent + COL); - error_msg(progname, - "internal error (file %s:line %d)\n", - __FILE__, __LINE__); - indentation(indent); - end_obj(dump_header_format->datasetend, - dump_header_format->datasetblockend); + if(H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &targname) < 0) { + error_msg(progname, "unable to unpack external link value\n"); d_status = EXIT_FAILURE; ret = FAIL; - H5Dclose(obj); - goto done; - } else if (found_obj->displayed) { - indentation(indent); - - if (!doxml) { - begin_obj(dump_header_format->datasetbegin, name, - dump_header_format->datasetblockbegin); + } /* end if */ + else { + if(!doxml) { indentation(indent + COL); - printf("%s \"%s\"\n", HARDLINK, found_obj->objname); - indentation(indent); - end_obj(dump_header_format->datasetend, - dump_header_format->datasetblockend); - } else { - /* the XML version */ - char *t_obj_path = xml_escape_the_name(obj_path); - char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); - char *t_name = xml_escape_the_name(name); - char dsetxid[100]; + printf("LINKCLASS %d\n", linfo->type); + indentation(indent + COL); + printf("TARGETFILE \"%s\"\n", filename); + indentation(indent + COL); + printf("TARGETPATH \"%s\"\n", targname); + } /* end if */ + /* XML */ + else { + char linkxid[100]; char parentxid[100]; - char pointerxid[100]; + char *t_name = xml_escape_the_name(name); + char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + char *t_obj_path = xml_escape_the_name(obj_path); + char *t_filename = xml_escape_the_name(filename); + char *t_targname = xml_escape_the_name(targname); /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1); + xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1); xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); - printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" " - "H5Path=\"%s\" Parents=\"%s\" " - "H5ParentPaths=\"%s\">\n", - xmlnsprefix, - t_name, /* Dataset Name */ - dsetxid, get_next_xid(), /* OBJ-XID */ - t_obj_path, /* H5Path */ - parentxid, /* Parents */ - t_prefix); /* H5ParentPaths */ - - indentation(indent + COL); - xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1); - printf("<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n", - xmlnsprefix, - pointerxid,t_obj_path); - indentation(indent); - printf("</%sDataset>\n", xmlnsprefix); - + printf("<%sExternalLink LinkName=\"%s\" " + "OBJ-XID=\"%s\" " + "H5SourcePath=\"%s\" " + "TargetFilename=\"%s\" " + "TargetPath=\"%s\" " + "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", + xmlnsprefix, + t_name, /* LinkName */ + linkxid, /* OBJ-XID */ + t_obj_path, /* H5SourcePath */ + filename, /* TargetFilename */ + targname, /* TargetPath*/ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + HDfree(t_prefix); HDfree(t_name); + HDfree(t_filename); + HDfree(t_targname); HDfree(t_obj_path); - HDfree(t_prefix); - } - - H5Dclose(obj); - goto done; - } else { - found_obj->displayed = TRUE; - } + } /* end else */ + } /* end else */ + } /* end else */ + if(!doxml) { + indentation(indent); + end_obj(dump_header_format->extlinkend, dump_header_format->extlinkblockend); } /* end if */ + HDfree(targbuf); + break; - dump_function_table->dump_dataset_function(obj, name, NULL); - H5Dclose(obj); - } else { - error_msg(progname, "unable to dump dataset \"%s\"\n", name); - d_status = EXIT_FAILURE; - ret = FAIL; - } - break; + default: + indentation(indent); + if(!doxml) { + begin_obj(dump_header_format->udlinkbegin, name, dump_header_format->udlinkblockbegin); + indentation(indent + COL); + printf("LINKCLASS %d\n", linfo->type); + indentation(indent); + end_obj(dump_header_format->udlinkend, dump_header_format->udlinkblockend); + } /* end if */ + /* XML */ + else { + char linkxid[100]; + char parentxid[100]; + char *t_name = xml_escape_the_name(name); + char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + char *t_obj_path = xml_escape_the_name(obj_path); - case H5G_TYPE: - if ((obj = H5Topen(group, name)) < 0) { - error_msg(progname, "unable to dump data type \"%s\"\n", name); - d_status = EXIT_FAILURE; - ret = FAIL; - } else { - dump_function_table->dump_named_datatype_function(obj, name); - H5Tclose(obj); - } - break; + /* Create OBJ-XIDs for the parent and object */ + xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1); + xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); - default: - error_msg(progname, "unknown object \"%s\"\n", name); - d_status = EXIT_FAILURE; - ret = FAIL; - } + printf("<%sUserDefined LinkName=\"%s\" " + "OBJ-XID=\"%s\" " + "H5SourcePath=\"%s\" " + "LinkClass=\"%d\" " + "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", + xmlnsprefix, + t_name, /* LinkName */ + linkxid, /* OBJ-XID */ + t_obj_path, /* H5SourcePath */ + linfo->type, /* LinkClass */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + HDfree(t_prefix); + HDfree(t_name); + HDfree(t_obj_path); + } /* end else */ + break; + } /* end switch */ + } /* end else */ done: if(obj_path) @@ -1796,7 +1738,7 @@ done: /*------------------------------------------------------------------------- * Function: dump_named_datatype * - * Purpose: Dump named data type + * Purpose: Dump named datatype * * Return: void * @@ -1810,25 +1752,25 @@ done: static void dump_named_datatype(hid_t type, const char *name) { - indentation(indent); - printf("%s \"%s\" %s", dump_header_format->datatypebegin, name, - dump_header_format->datatypeblockbegin); - - if (H5Tget_class(type) == H5T_COMPOUND) { - print_datatype(type,1); - } else { - indentation(indent + COL); - print_datatype(type,1); - printf(";\n"); - } + indentation(indent); + printf("%s \"%s\" %s", dump_header_format->datatypebegin, name, + dump_header_format->datatypeblockbegin); - /* print attributes */ - indent += COL; - H5Aiterate(type, NULL, dump_attr, NULL); - indent -= COL; + if(H5Tget_class(type) == H5T_COMPOUND) + print_datatype(type, 1); + else { + indentation(indent + COL); + print_datatype(type, 1); + printf(";\n"); + } /* end else */ + + /* print attributes */ + indent += COL; + H5Aiterate(type, NULL, dump_attr, NULL); + indent -= COL; - end_obj(dump_header_format->datatypeend, - dump_header_format->datatypeblockend); + end_obj(dump_header_format->datatypeend, + dump_header_format->datatypeblockend); } /*------------------------------------------------------------------------- @@ -1849,11 +1791,9 @@ dump_named_datatype(hid_t type, const char *name) static void dump_group(hid_t gid, const char *name) { - H5G_stat_t statbuf; - haddr_t objno; /* Compact form of object's location */ + H5O_info_t oinfo; hid_t dset, type; char type_name[1024], *tmp; - int xtype = H5G_UNKNOWN; /* dump all */ tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); HDstrcpy(tmp, prefix); @@ -1882,13 +1822,12 @@ dump_group(hid_t gid, const char *name) } } /* end if */ - H5Gget_objinfo(gid, ".", TRUE, &statbuf); - objno = (haddr_t)statbuf.objno[0] | ((haddr_t)statbuf.objno[1] << (8 * sizeof(long))); + H5Oget_info(gid, ".", &oinfo, H5P_DEFAULT); - if (statbuf.nlink > 1) { + if(oinfo.rc > 1) { obj_t *found_obj; /* Found object */ - found_obj = search_obj(group_table, objno); + found_obj = search_obj(group_table, oinfo.addr); if (found_obj == NULL) { indentation(indent); @@ -1901,11 +1840,11 @@ dump_group(hid_t gid, const char *name) } else { found_obj->displayed = TRUE; H5Aiterate(gid, NULL, dump_attr, NULL); - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); + H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, NULL, H5P_DEFAULT); } } else { H5Aiterate(gid, NULL, dump_attr, NULL); - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); + H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, NULL, H5P_DEFAULT); } indent -= COL; @@ -1930,27 +1869,32 @@ dump_group(hid_t gid, const char *name) static void dump_dataset(hid_t did, const char *name, struct subset_t *sset) { - hid_t type, space, dcpl_id; + hid_t type, space; indentation(indent); begin_obj(dump_header_format->datasetbegin, name, - dump_header_format->datasetblockbegin); + dump_header_format->datasetblockbegin); + type = H5Dget_type(did); space = H5Dget_space(did); - dcpl_id = H5Dget_create_plist(did); dump_comment(did); dump_datatype(type); dump_dataspace(space); - if (display_oid) + if(display_oid) dump_oid(did); - if (display_dcpl) + if(display_dcpl) { + hid_t dcpl_id; + + dcpl_id = H5Dget_create_plist(did); dump_dcpl(dcpl_id, type, did); + H5Pclose(dcpl_id); + } /* end if */ - if (display_data) - switch (H5Tget_class(type)) { + if(display_data) + switch(H5Tget_class(type)) { case H5T_TIME: indentation(indent + COL); printf("DATA{ not yet implemented.}\n"); @@ -1971,17 +1915,18 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) default: break; - } + } /* end switch */ indent += COL; H5Aiterate(did, NULL, dump_attr, NULL); indent -= COL; + H5Tclose(type); H5Sclose(space); - H5Pclose(dcpl_id); + indentation(indent); end_obj(dump_header_format->datasetend, - dump_header_format->datasetblockend); + dump_header_format->datasetblockend); } /*------------------------------------------------------------------------- @@ -2136,12 +2081,12 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index) dump_header_format->datablockbegin); /* Print all the values. */ - if (obj_data == DATASET_DATA) { + if(obj_data == DATASET_DATA) { hid_t f_type = H5Dget_type(obj_id); char string_prefix[64]; h5tool_format_t string_dataformat; - if (display_char && H5Tget_size(f_type) == 1 && H5Tget_class(f_type) == H5T_INTEGER) { + if(display_char && H5Tget_size(f_type) == 1 && H5Tget_class(f_type) == H5T_INTEGER) { /* * Print 1-byte integer data as an ASCII character string * instead of integers if the `-r' or `--string' command-line @@ -3042,8 +2987,7 @@ parse_subset_params(char *dset) static void handle_datasets(hid_t fid, char *dset, void *data) { - H5G_stat_t statbuf; - haddr_t objno; /* Compact form of object's location */ + H5O_info_t oinfo; hid_t dsetid; struct subset_t *sset = (struct subset_t *)data; @@ -3109,15 +3053,13 @@ handle_datasets(hid_t fid, char *dset, void *data) } } - H5Gget_objinfo(dsetid, ".", TRUE, &statbuf); - objno = (haddr_t)statbuf.objno[0] | ((haddr_t)statbuf.objno[1] << (8 * sizeof(long))); - - if (statbuf.nlink > 1) { + H5Oget_info(dsetid, ".", &oinfo, H5P_DEFAULT); + if(oinfo.rc > 1) { obj_t *found_obj; /* Found object */ - found_obj = search_obj(dset_table, objno); + found_obj = search_obj(dset_table, oinfo.addr); - if (found_obj) { + if(found_obj) { if (found_obj->displayed) { begin_obj(dump_header_format->datasetbegin, dset, dump_header_format->datasetblockbegin); @@ -3130,14 +3072,14 @@ handle_datasets(hid_t fid, char *dset, void *data) found_obj->displayed = TRUE; dump_dataset(dsetid, dset, sset); } - } else { - d_status = EXIT_FAILURE; } - } else { - dump_dataset(dsetid, dset, sset); + else + d_status = EXIT_FAILURE; } + else + dump_dataset(dsetid, dset, sset); - if (H5Dclose(dsetid) < 0) + if(H5Dclose(dsetid) < 0) d_status = EXIT_FAILURE; } @@ -3199,47 +3141,44 @@ handle_groups(hid_t fid, char *group, void UNUSED * data) static void handle_links(hid_t fid, char *links, void UNUSED * data) { - H5G_stat_t statbuf; H5L_info_t linfo; - if(H5Gget_objinfo(fid, links, FALSE, &statbuf) < 0) { - error_msg(progname, "unable to get obj info from \"%s\"\n", links); - d_status = EXIT_FAILURE; - } else if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) { + if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) { error_msg(progname, "unable to get link info from \"%s\"\n", links); d_status = EXIT_FAILURE; - } else if(statbuf.type == H5G_LINK) { /* Soft link */ - char *buf = HDmalloc(statbuf.linklen); - - begin_obj(dump_header_format->softlinkbegin, links, - dump_header_format->softlinkblockbegin); - indentation(COL); - - if(H5Lget_val(fid, links, buf, statbuf.linklen, H5P_DEFAULT) >= 0) { - printf("LINKTARGET \"%s\"\n", buf); - } else { - error_msg(progname, "h5dump error: unable to get link value for \"%s\"\n", - links); - d_status = EXIT_FAILURE; - } + } else if(linfo.type == H5L_TYPE_HARD) { + error_msg(progname, "\"%s\" is a hard link\n", links); + d_status = EXIT_FAILURE; + } else { + char *buf = HDmalloc(linfo.u.val_size); - end_obj(dump_header_format->softlinkend, - dump_header_format->softlinkblockend); - HDfree(buf); - } else if(statbuf.type == H5G_UDLINK) { /* User-defined link */ - char *buf = HDmalloc(statbuf.linklen); - begin_obj(dump_header_format->udlinkbegin, links, - dump_header_format->udlinkblockbegin); - indentation(COL); switch(linfo.type) { + case H5L_TYPE_SOFT: /* Soft link */ + begin_obj(dump_header_format->softlinkbegin, links, + dump_header_format->softlinkblockbegin); + indentation(COL); + if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) + printf("LINKTARGET \"%s\"\n", buf); + else { + error_msg(progname, "h5dump error: unable to get link value for \"%s\"\n", + links); + d_status = EXIT_FAILURE; + } + end_obj(dump_header_format->softlinkend, + dump_header_format->softlinkblockend); + break; + case H5L_TYPE_EXTERNAL: + begin_obj(dump_header_format->udlinkbegin, links, + dump_header_format->udlinkblockbegin); + indentation(COL); begin_obj(dump_header_format->extlinkbegin, links, dump_header_format->extlinkblockbegin); - if(H5Lget_val(fid, links, buf, statbuf.linklen, H5P_DEFAULT) >= 0) { + if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) { const char *elink_file; const char *elink_path; - if(H5Lunpack_elink_val(buf, statbuf.linklen, NULL, &elink_file, &elink_path)>=0) { + if(H5Lunpack_elink_val(buf, linfo.u.val_size, NULL, &elink_file, &elink_path)>=0) { indentation(COL); printf("LINKCLASS %d\n", linfo.type); indentation(COL); @@ -3250,26 +3189,28 @@ handle_links(hid_t fid, char *links, void UNUSED * data) error_msg(progname, "h5dump error: unable to unpack external link value for \"%s\"\n", links); d_status = EXIT_FAILURE; } - } else { - error_msg(progname, "h5dump error: unable to get external link value for \"%s\"\n", links); - d_status = EXIT_FAILURE; - } - end_obj(dump_header_format->extlinkend, - dump_header_format->extlinkblockend); - break; - default: - begin_obj(dump_header_format->udlinkbegin, links, - dump_header_format->udlinkblockbegin); - indentation(COL); - printf("LINKCLASS %d\n", linfo.type); - end_obj(dump_header_format->udlinkend, - dump_header_format->udlinkblockend); - } + } else { + error_msg(progname, "h5dump error: unable to get external link value for \"%s\"\n", links); + d_status = EXIT_FAILURE; + } + end_obj(dump_header_format->extlinkend, + dump_header_format->extlinkblockend); + break; + + default: + begin_obj(dump_header_format->udlinkbegin, links, + dump_header_format->udlinkblockbegin); + indentation(COL); + begin_obj(dump_header_format->udlinkbegin, links, + dump_header_format->udlinkblockbegin); + indentation(COL); + printf("LINKCLASS %d\n", linfo.type); + end_obj(dump_header_format->udlinkend, + dump_header_format->udlinkblockend); + break; + } /* end switch */ HDfree(buf); - } else { - error_msg(progname, "\"%s\" is not a link\n", links); - d_status = EXIT_FAILURE; - } + } /* end else */ } /*------------------------------------------------------------------------- @@ -3292,14 +3233,14 @@ handle_datatypes(hid_t fid, char *type, void UNUSED * data) hid_t type_id; if ((type_id = H5Topen(fid, type)) < 0) { - /* check if type is unamed data type */ + /* check if type is unamed datatype */ unsigned idx = 0; while (idx < type_table->nobjs ) { char name[128]; if (!type_table->objs[idx].recorded) { - /* unamed data type */ + /* unamed datatype */ sprintf(name, "/#"H5_PRINTF_HADDR_FMT, type_table->objs[idx].objno); if (!HDstrcmp(name, type)) @@ -3733,27 +3674,27 @@ main(int argc, const char *argv[]) /* Check for conflicting options */ if (doxml) { - if (!display_all) { + if (!display_all) { error_msg(progname, "option \"%s\" not available for XML\n", - "to display selected objects"); - leave(EXIT_FAILURE); - } else if (display_bb) { + "to display selected objects"); + leave(EXIT_FAILURE); + } else if (display_bb) { error_msg(progname, "option \"%s\" not available for XML\n", - "--boot-block"); - leave(EXIT_FAILURE); - } else if (display_oid == 1) { + "--boot-block"); + leave(EXIT_FAILURE); + } else if (display_oid == 1) { error_msg(progname, "option \"%s\" not available for XML\n", - "--object-ids"); - leave(EXIT_FAILURE); + "--object-ids"); + leave(EXIT_FAILURE); } else if (display_char == TRUE) { error_msg(progname, "option \"%s\" not available for XML\n", - "--string"); - leave(EXIT_FAILURE); - } else if (usingdasho) { + "--string"); + leave(EXIT_FAILURE); + } else if (usingdasho) { error_msg(progname, "option \"%s\" not available for XML\n", - "--output"); - leave(EXIT_FAILURE); - } + "--output"); + leave(EXIT_FAILURE); + } } else { if (xml_dtd_uri) { warn_msg(progname, "option \"%s\" only applies with XML: %s\n", @@ -3778,9 +3719,8 @@ main(int argc, const char *argv[]) /* allocate and initialize internal data structure */ init_prefix(&prefix, prefix_len); - /* find all objects that might be targets of a refernce */ - init_ref_path_table(fid); /* Insert the root group into the ref. path table */ - H5Literate(fid, (const char *)"/", H5_INDEX_NAME, H5_ITER_INC, NULL, fill_ref_path_table, (void *)"", H5P_DEFAULT); + /* find all objects that might be targets of a reference */ + fill_ref_path_table(fid); if(doxml) { /* initialize XML */ @@ -3811,7 +3751,7 @@ main(int argc, const char *argv[]) goto done; } - /* does there exist unamed committed data type */ + /* does there exist unamed committed datatype */ for (u = 0; u < type_table->nobjs; u++) if (!type_table->objs[u].recorded) { unamedtype = 1; @@ -3824,12 +3764,12 @@ main(int argc, const char *argv[]) /* start to dump - display file header information */ if (!doxml) { - begin_obj(dump_header_format->filebegin, fname, - dump_header_format->fileblockbegin); + begin_obj(dump_header_format->filebegin, fname, + dump_header_format->fileblockbegin); } else { - printf("<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"); + printf("<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"); - /* alternative first element, depending on schema or DTD. */ + /* alternative first element, depending on schema or DTD. */ if (useschema) { if (strcmp(xmlnsprefix,"") == 0) { printf("<HDF5-File xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"%s\">\n", @@ -3848,11 +3788,11 @@ main(int argc, const char *argv[]) "xsi:schemaLocation=\"http://hdfgroup.org/DTDs/HDF5File " "http://hdfgroup.org/DTDs/HDF5-File.xsd\">\n",xmlnsprefix,ns); } - } else { - printf("<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n", - xml_dtd_uri); - printf("<HDF5-File>\n"); - } + } else { + printf("<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n", + xml_dtd_uri); + printf("<HDF5-File>\n"); + } } if (!doxml) { @@ -3942,7 +3882,7 @@ print_enum(hid_t type) unsigned nmembs; /*number of members */ int nchars; /*number of output characters */ hid_t super; /*enum base integer type */ - hid_t native = -1; /*native integer data type */ + hid_t native = -1; /*native integer datatype */ size_t dst_size; /*destination value type size */ unsigned i; @@ -3951,7 +3891,7 @@ print_enum(hid_t type) super = H5Tget_super(type); /* - * Determine what data type to use for the native values. To simplify + * Determine what datatype to use for the native values. To simplify * things we entertain three possibilities: * 1. long_long -- the largest native signed integer * 2. unsigned long_long -- the largest native unsigned integer @@ -3978,7 +3918,7 @@ print_enum(hid_t type) H5Tget_member_value(type, i, value + i * H5Tget_size(type)); } - /* Convert values to native data type */ + /* Convert values to native datatype */ if (native > 0) H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT); @@ -4300,32 +4240,32 @@ xml_print_datatype(hid_t type, unsigned in_group) int nmembs; htri_t is_vlstr=FALSE; - if (!in_group && H5Tcommitted(type) > 0) { - H5G_stat_t statbuf; - haddr_t objno; /* Compact form of object's location */ + if(!in_group && H5Tcommitted(type) > 0) { + H5O_info_t oinfo; obj_t *found_obj; /* Found object */ /* detect a shared datatype, output only once */ - H5Gget_objinfo(type, ".", TRUE, &statbuf); - objno = (haddr_t)statbuf.objno[0] | ((haddr_t)statbuf.objno[1] << (8 * sizeof(long))); - found_obj = search_obj(type_table, objno); + H5Oget_info(type, ".", &oinfo, H5P_DEFAULT); + found_obj = search_obj(type_table, oinfo.addr); - if (found_obj) { + if(found_obj) { /* This should be defined somewhere else */ /* These 2 cases are handled the same right now, but probably will have something different eventually */ char * dtxid = malloc(100); - xml_name_to_XID(found_obj->objname,dtxid,100,1); + + xml_name_to_XID(found_obj->objname, dtxid, 100, 1); if (!found_obj->recorded) { /* 'anonymous' NDT. Use it's object num. as it's name. */ printf("<%sNamedDataTypePtr OBJ-XID=\"/%s\"/>\n", - xmlnsprefix, dtxid); + xmlnsprefix, dtxid); } else { /* point to the NDT by name */ char *t_objname = xml_escape_the_name(found_obj->objname); + printf("<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n", - xmlnsprefix, dtxid,t_objname); + xmlnsprefix, dtxid, t_objname); free(t_objname); } free(dtxid); @@ -4333,311 +4273,310 @@ xml_print_datatype(hid_t type, unsigned in_group) printf("<!-- h5dump error: unknown committed type. -->\n"); d_status = EXIT_FAILURE; } - } else { switch (H5Tget_class(type)) { - case H5T_INTEGER: - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - /* <hdf5:IntegerType ByteOrder="bo" Sign="torf" Size="bytes"/> */ - ord = H5Tget_order(type); - sgn = H5Tget_sign(type); - indentation(indent); - printf("<%sIntegerType ByteOrder=\"",xmlnsprefix); - switch (ord) { - case H5T_ORDER_LE: - printf("LE"); - break; - case H5T_ORDER_BE: - printf("BE"); + case H5T_INTEGER: + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + /* <hdf5:IntegerType ByteOrder="bo" Sign="torf" Size="bytes"/> */ + ord = H5Tget_order(type); + sgn = H5Tget_sign(type); + indentation(indent); + printf("<%sIntegerType ByteOrder=\"",xmlnsprefix); + switch (ord) { + case H5T_ORDER_LE: + printf("LE"); + break; + case H5T_ORDER_BE: + printf("BE"); + break; + case H5T_ORDER_VAX: + default: + printf("ERROR_UNKNOWN"); + } + printf("\" Sign=\""); + switch (sgn) { + case H5T_SGN_NONE: + printf("false"); + break; + case H5T_SGN_2: + printf("true"); + break; + default: + printf("ERROR_UNKNOWN"); + } + printf("\" Size=\""); + sz = H5Tget_size(type); + printf("%lu", (unsigned long)sz); + printf("\" />\n"); + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); break; - case H5T_ORDER_VAX: - default: - printf("ERROR_UNKNOWN"); - } - printf("\" Sign=\""); - switch (sgn) { - case H5T_SGN_NONE: - printf("false"); + + case H5T_FLOAT: + /* <hdf5:FloatType ByteOrder="bo" Size="bytes" + SignBitLocation="bytes" + ExponentBits="eb" ExponentLocation="el" + MantissaBits="mb" MantissaLocation="ml" /> */ + ord = H5Tget_order(type); + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sFloatType ByteOrder=\"",xmlnsprefix); + switch (ord) { + case H5T_ORDER_LE: + printf("LE"); + break; + case H5T_ORDER_BE: + printf("BE"); + break; + case H5T_ORDER_VAX: + printf("VAX"); + break; + default: + printf("ERROR_UNKNOWN"); + } + printf("\" Size=\""); + sz = H5Tget_size(type); + printf("%lu", (unsigned long)sz); + H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize); + printf("\" SignBitLocation=\"%lu\" ", (unsigned long)spos); + printf("ExponentBits=\"%lu\" ExponentLocation=\"%lu\" ", (unsigned long)esize, (unsigned long)epos); + printf("MantissaBits=\"%lu\" MantissaLocation=\"%lu\" />\n", + (unsigned long)msize, (unsigned long)mpos); + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); break; - case H5T_SGN_2: - printf("true"); + + case H5T_TIME: + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sTimeType />\n",xmlnsprefix); + printf("<!-- H5T_TIME: not yet implemented -->"); + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); break; - default: - printf("ERROR_UNKNOWN"); - } - printf("\" Size=\""); - sz = H5Tget_size(type); - printf("%lu", (unsigned long)sz); - printf("\" />\n"); - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; - case H5T_FLOAT: - /* <hdf5:FloatType ByteOrder="bo" Size="bytes" - SignBitLocation="bytes" - ExponentBits="eb" ExponentLocation="el" - MantissaBits="mb" MantissaLocation="ml" /> */ - ord = H5Tget_order(type); - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sFloatType ByteOrder=\"",xmlnsprefix); - switch (ord) { - case H5T_ORDER_LE: - printf("LE"); + case H5T_STRING: + /* <hdf5:StringType Cset="cs" StrSize="chars" StrPad="pad" /> */ + size = H5Tget_size(type); + str_pad = H5Tget_strpad(type); + cset = H5Tget_cset(type); + is_vlstr = H5Tis_variable_str(type); + + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sStringType Cset=\"",xmlnsprefix); + if (cset == H5T_CSET_ASCII) { + printf("H5T_CSET_ASCII\" "); + } else { + printf("unknown_cset\" "); + } + if(is_vlstr) + printf("StrSize=\"H5T_VARIABLE\" StrPad=\""); + else + printf("StrSize=\"%d\" StrPad=\"", (int) size); + if (str_pad == H5T_STR_NULLTERM) { + printf("H5T_STR_NULLTERM\"/>\n"); + } else if (str_pad == H5T_STR_NULLPAD) { + printf("H5T_STR_NULLPAD\"/>\n"); + } else if (str_pad == H5T_STR_SPACEPAD) { + printf("H5T_STR_SPACEPAD\"/>\n"); + } else { + printf("H5T_STR_ERROR\"/>\n"); + } + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); break; - case H5T_ORDER_BE: - printf("BE"); + + case H5T_BITFIELD: + /* <hdf5:BitfieldType ByteOrder="bo" Size="bytes"/> */ + ord = H5Tget_order(type); + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sBitfieldType ByteOrder=\"",xmlnsprefix); + switch (ord) { + case H5T_ORDER_LE: + printf("LE"); + break; + case H5T_ORDER_BE: + printf("BE"); + break; + case H5T_ORDER_VAX: + default: + printf("ERROR_UNKNOWN"); + } + size = H5Tget_size(type); + printf("\" Size=\"%lu\"/>\n", (unsigned long)size); + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); break; - case H5T_ORDER_VAX: - printf("VAX"); - break; - default: - printf("ERROR_UNKNOWN"); - } - printf("\" Size=\""); - sz = H5Tget_size(type); - printf("%lu", (unsigned long)sz); - H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize); - printf("\" SignBitLocation=\"%lu\" ", (unsigned long)spos); - printf("ExponentBits=\"%lu\" ExponentLocation=\"%lu\" ", (unsigned long)esize, (unsigned long)epos); - printf("MantissaBits=\"%lu\" MantissaLocation=\"%lu\" />\n", - (unsigned long)msize, (unsigned long)mpos); - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; - case H5T_TIME: - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sTimeType />\n",xmlnsprefix); - printf("<!-- H5T_TIME: not yet implemented -->"); - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; + case H5T_OPAQUE: + /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */ + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sOpaqueType Tag=\"%s\" ",xmlnsprefix, H5Tget_tag(type)); + size = H5Tget_size(type); + printf("Size=\"%lu\"/>\n", (unsigned long)size); + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); + break; - case H5T_STRING: - /* <hdf5:StringType Cset="cs" StrSize="chars" StrPad="pad" /> */ - size = H5Tget_size(type); - str_pad = H5Tget_strpad(type); - cset = H5Tget_cset(type); - is_vlstr = H5Tis_variable_str(type); + case H5T_COMPOUND: + /* recursively describe the components of a compound datatype */ - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sStringType Cset=\"",xmlnsprefix); - if (cset == H5T_CSET_ASCII) { - printf("H5T_CSET_ASCII\" "); - } else { - printf("unknown_cset\" "); - } - if(is_vlstr) - printf("StrSize=\"H5T_VARIABLE\" StrPad=\""); - else - printf("StrSize=\"%d\" StrPad=\"", (int) size); - if (str_pad == H5T_STR_NULLTERM) { - printf("H5T_STR_NULLTERM\"/>\n"); - } else if (str_pad == H5T_STR_NULLPAD) { - printf("H5T_STR_NULLPAD\"/>\n"); - } else if (str_pad == H5T_STR_SPACEPAD) { - printf("H5T_STR_SPACEPAD\"/>\n"); - } else { - printf("H5T_STR_ERROR\"/>\n"); - } - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; + /* type of a dataset */ + nmembers = H5Tget_nmembers(type); - case H5T_BITFIELD: - /* <hdf5:BitfieldType ByteOrder="bo" Size="bytes"/> */ - ord = H5Tget_order(type); - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sBitfieldType ByteOrder=\"",xmlnsprefix); - switch (ord) { - case H5T_ORDER_LE: - printf("LE"); - break; - case H5T_ORDER_BE: - printf("BE"); - break; - case H5T_ORDER_VAX: - default: - printf("ERROR_UNKNOWN"); - } - size = H5Tget_size(type); - printf("\" Size=\"%lu\"/>\n", (unsigned long)size); - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; + indentation(indent); + printf("<%sCompoundType>\n",xmlnsprefix); - case H5T_OPAQUE: - /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */ - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sOpaqueType Tag=\"%s\" ",xmlnsprefix, H5Tget_tag(type)); - size = H5Tget_size(type); - printf("Size=\"%lu\"/>\n", (unsigned long)size); - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; + /* List each member Field of the type */ + /* <hdf5:Field FieldName="name" > */ + /* <hdf5:DataType > */ + indent += COL; + for (i = 0; i < nmembers; i++) { + char *t_fname; - case H5T_COMPOUND: - /* recursively describe the components of a compound datatype */ + mname = H5Tget_member_name(type, i); + mtype = H5Tget_member_type(type, i); + indentation(indent); + t_fname = xml_escape_the_name(mname); + printf("<%sField FieldName=\"%s\">\n",xmlnsprefix, t_fname); - /* type of a dataset */ - nmembers = H5Tget_nmembers(type); + free(mname); + free(t_fname); + indent += COL; + indentation(indent); + printf("<%sDataType>\n",xmlnsprefix); + indent += COL; + xml_print_datatype(mtype,0); + indent -= COL; + indentation(indent); + printf("</%sDataType>\n",xmlnsprefix); + indent -= COL; - indentation(indent); - printf("<%sCompoundType>\n",xmlnsprefix); + indentation(indent); + printf("</%sField>\n",xmlnsprefix); + } + indent -= COL; + indentation(indent); + printf("</%sCompoundType>\n",xmlnsprefix); + break; - /* List each member Field of the type */ - /* <hdf5:Field FieldName="name" > */ - /* <hdf5:DataType > */ - indent += COL; - for (i = 0; i < nmembers; i++) { - char *t_fname; + case H5T_REFERENCE: + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + indentation(indent); + /* Only Object references supported at this time */ + printf("<%sReferenceType>\n",xmlnsprefix); + indentation(indent + COL); + printf("<%sObjectReferenceType />\n",xmlnsprefix); + indentation(indent); + printf("</%sReferenceType>\n",xmlnsprefix); + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); + break; - mname = H5Tget_member_name(type, i); - mtype = H5Tget_member_type(type, i); + case H5T_ENUM: + /* <hdf5:EnumType Nelems="ne" > + list Name, values of enum + */ + nmembs = H5Tget_nmembers(type); + indentation(indent); + printf("<%sAtomicType>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sEnumType Nelems=\"%d\">\n",xmlnsprefix, nmembs); + xml_print_enum(type); indentation(indent); - t_fname = xml_escape_the_name(mname); - printf("<%sField FieldName=\"%s\">\n",xmlnsprefix, t_fname); + printf("</%sEnumType>\n",xmlnsprefix); + indent -= COL; + indentation(indent); + printf("</%sAtomicType>\n",xmlnsprefix); + break; - free(mname); - free(t_fname); + case H5T_VLEN: + indentation(indent); + printf("<%sVLType>\n",xmlnsprefix); + super = H5Tget_super(type); indent += COL; indentation(indent); printf("<%sDataType>\n",xmlnsprefix); indent += COL; - xml_print_datatype(mtype,0); + xml_print_datatype(super,0); indent -= COL; indentation(indent); printf("</%sDataType>\n",xmlnsprefix); indent -= COL; - indentation(indent); - printf("</%sField>\n",xmlnsprefix); - } - indent -= COL; - indentation(indent); - printf("</%sCompoundType>\n",xmlnsprefix); - break; - - case H5T_REFERENCE: - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - indentation(indent); - /* Only Object references supported at this time */ - printf("<%sReferenceType>\n",xmlnsprefix); - indentation(indent + COL); - printf("<%sObjectReferenceType />\n",xmlnsprefix); - indentation(indent); - printf("</%sReferenceType>\n",xmlnsprefix); - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; - - case H5T_ENUM: - /* <hdf5:EnumType Nelems="ne" > - list Name, values of enum - */ - nmembs = H5Tget_nmembers(type); - indentation(indent); - printf("<%sAtomicType>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sEnumType Nelems=\"%d\">\n",xmlnsprefix, nmembs); - xml_print_enum(type); - indentation(indent); - printf("</%sEnumType>\n",xmlnsprefix); - indent -= COL; - indentation(indent); - printf("</%sAtomicType>\n",xmlnsprefix); - break; + printf("</%sVLType>\n",xmlnsprefix); + H5Tclose(super); - case H5T_VLEN: - indentation(indent); - printf("<%sVLType>\n",xmlnsprefix); - super = H5Tget_super(type); - indent += COL; - indentation(indent); - printf("<%sDataType>\n",xmlnsprefix); - indent += COL; - xml_print_datatype(super,0); - indent -= COL; - indentation(indent); - printf("</%sDataType>\n",xmlnsprefix); - indent -= COL; - indentation(indent); - printf("</%sVLType>\n",xmlnsprefix); - H5Tclose(super); + break; - break; + case H5T_ARRAY: + /* Get array base type */ + super = H5Tget_super(type); - case H5T_ARRAY: - /* Get array base type */ - super = H5Tget_super(type); + /* Print lead-in */ + indentation(indent); + printf("<%sArrayType Ndims=\"",xmlnsprefix); + ndims = H5Tget_array_ndims(type); + printf("%u\">\n", ndims); - /* Print lead-in */ - indentation(indent); - printf("<%sArrayType Ndims=\"",xmlnsprefix); - ndims = H5Tget_array_ndims(type); - printf("%u\">\n", ndims); + /* Get array information */ + H5Tget_array_dims(type, dims, NULL); - /* Get array information */ - H5Tget_array_dims(type, dims, NULL); + /* list of dimensions */ + indent += COL; + for (i = 0; i < ndims; i++) { + indentation(indent); + printf("<%sArrayDimension DimSize=\"%u\"/>\n", + xmlnsprefix, + (int) dims[i]); + } + indent -= COL; - /* list of dimensions */ - indent += COL; - for (i = 0; i < ndims; i++) { + indent += COL; indentation(indent); - printf("<%sArrayDimension DimSize=\"%u\"/>\n", - xmlnsprefix, - (int) dims[i]); - } - indent -= COL; - - indent += COL; - indentation(indent); - printf("<%sDataType>\n",xmlnsprefix); - indent += COL; - xml_print_datatype(super,0); - indent -= COL; - indentation(indent); - printf("</%sDataType>\n",xmlnsprefix); - indent -= COL; - indentation(indent); - printf("</%sArrayType>\n",xmlnsprefix); - /* Close array base type */ - H5Tclose(super); - break; + printf("<%sDataType>\n",xmlnsprefix); + indent += COL; + xml_print_datatype(super,0); + indent -= COL; + indentation(indent); + printf("</%sDataType>\n",xmlnsprefix); + indent -= COL; + indentation(indent); + printf("</%sArrayType>\n",xmlnsprefix); + /* Close array base type */ + H5Tclose(super); + break; - default: - printf("<!-- unknown data type -->"); - d_status = EXIT_FAILURE; - break; + default: + printf("<!-- unknown datatype -->"); + d_status = EXIT_FAILURE; + break; } } /* end else */ } @@ -4662,51 +4601,51 @@ xml_dump_datatype(hid_t type) indent += COL; indentation(indent); - if (H5Tcommitted(type) > 0) { - H5G_stat_t statbuf; - haddr_t objno; /* Compact form of object's location */ + if(H5Tcommitted(type) > 0) { + H5O_info_t oinfo; obj_t *found_obj; /* Found object */ - /* Data type is a shared or named data type */ - H5Gget_objinfo(type, ".", TRUE, &statbuf); - objno = (haddr_t)statbuf.objno[0] | ((haddr_t)statbuf.objno[1] << (8 * sizeof(long))); - found_obj = search_obj(type_table, objno); - - if (found_obj) { - /* Shared data type, must be entered as an object */ - /* These 2 cases are the same now, but may change */ - char * dtxid = malloc(100); - xml_name_to_XID(found_obj->objname,dtxid,100,1); - if (!found_obj->recorded) { - /* anonymous stored data type: - following the dumper's current - practice: - use it's object ref as its name - */ - printf("<%sNamedDataTypePtr OBJ-XID=\"%s\"/>\n", - xmlnsprefix, dtxid); + /* Datatype is a shared or named datatype */ + H5Oget_info(type, ".", &oinfo, H5P_DEFAULT); + found_obj = search_obj(type_table, oinfo.addr); - } else { - /* pointer to a named data type already in XML */ + if(found_obj) { + /* Shared datatype, must be entered as an object */ + /* These 2 cases are the same now, but may change */ + char * dtxid = malloc(100); + + xml_name_to_XID(found_obj->objname, dtxid, 100, 1); + if (!found_obj->recorded) { + /* anonymous stored datatype: + following the dumper's current + practice: + use it's object ref as its name + */ + printf("<%sNamedDataTypePtr OBJ-XID=\"%s\"/>\n", + xmlnsprefix, dtxid); + } else { + /* pointer to a named datatype already in XML */ char *t_objname = xml_escape_the_name(found_obj->objname); - printf("<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\" />\n", - xmlnsprefix, dtxid,t_objname); - free(t_objname); + + printf("<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\" />\n", + xmlnsprefix, dtxid, t_objname); + free(t_objname); + } + free(dtxid); + } else { + printf("<!-- h5dump error: unknown committed type. -->\n"); } - free(dtxid); - } else { - printf("<!-- h5dump error: unknown committed type. -->\n"); + indent -= COL; } - indent -= COL; - return; + else { + printf("<%sDataType>\n", xmlnsprefix); + indent += COL; + xml_print_datatype(type, 0); + indent -= COL; + indentation(indent); + printf("</%sDataType>\n", xmlnsprefix); + indent -= COL; } - printf("<%sDataType>\n",xmlnsprefix); - indent += COL; - xml_print_datatype(type,0); - indent -= COL; - indentation(indent); - printf("</%sDataType>\n",xmlnsprefix); - indent -= COL; } /*------------------------------------------------------------------------- @@ -4738,47 +4677,47 @@ xml_dump_dataspace(hid_t space) switch (space_type) { case H5S_SCALAR: - /* scalar dataspace (just a tag, no XML attrs. defined */ - printf("<%sScalarDataspace />\n",xmlnsprefix); - + /* scalar dataspace (just a tag, no XML attrs. defined */ + printf("<%sScalarDataspace />\n",xmlnsprefix); break; - case H5S_SIMPLE: - /* simple dataspace */ - /* <hdf5:SimpleDataspace Ndims="nd"> */ - printf("<%sSimpleDataspace Ndims=\"%d\">\n",xmlnsprefix, ndims); - /* print the <hdf5:Dimension> elements */ - for (i = 0; i < ndims; i++) { - indentation(indent + COL + COL + COL); - if (maxsize[i] == H5S_UNLIMITED) { - HDfprintf(stdout, - "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"UNLIMITED\"/>\n", - xmlnsprefix,size[i]); - } else if (maxsize[i] == (hsize_t) 0) { - HDfprintf(stdout, - "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n", - xmlnsprefix,size[i], size[i]); - } else { - HDfprintf(stdout, - "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n", - xmlnsprefix, size[i], maxsize[i]); - } - } - indentation(indent + COL + COL); - printf("</%sSimpleDataspace>\n", xmlnsprefix ); + case H5S_SIMPLE: + /* simple dataspace */ + /* <hdf5:SimpleDataspace Ndims="nd"> */ + printf("<%sSimpleDataspace Ndims=\"%d\">\n",xmlnsprefix, ndims); + /* print the <hdf5:Dimension> elements */ + for (i = 0; i < ndims; i++) { + indentation(indent + COL + COL + COL); + if (maxsize[i] == H5S_UNLIMITED) { + HDfprintf(stdout, + "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"UNLIMITED\"/>\n", + xmlnsprefix,size[i]); + } else if (maxsize[i] == (hsize_t) 0) { + HDfprintf(stdout, + "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n", + xmlnsprefix,size[i], size[i]); + } else { + HDfprintf(stdout, + "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n", + xmlnsprefix, size[i], maxsize[i]); + } + } + indentation(indent + COL + COL); + printf("</%sSimpleDataspace>\n", xmlnsprefix ); break; + #ifdef TMP /* Commented out: wait until the schema is updated first */ case H5S_NULL: - /* null dataspace (just a tag, no XML attrs. defined */ - printf("<%sNullDataspace />\n",xmlnsprefix); - + /* null dataspace (just a tag, no XML attrs. defined */ + printf("<%sNullDataspace />\n",xmlnsprefix); break; #endif /* TMP */ + case H5S_NO_CLASS: default: - printf("<!-- unknown dataspace -->\n"); + printf("<!-- unknown dataspace -->\n"); } indentation(indent + COL); @@ -4829,60 +4768,59 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNU indentation(indent + COL); printf("<%sDataFromFile>\n",xmlnsprefix); if (obj_data == DATASET_DATA) { - type = H5Dget_type(obj_id); - if (H5Tget_class(type) == H5T_REFERENCE) { - status = xml_print_refs(obj_id, DATASET_DATA); - } else if (H5Tget_class(type) == H5T_STRING) { - status = xml_print_strs(obj_id, DATASET_DATA); - } else { - status = h5tools_dump_dset(stdout, outputformat, obj_id, -1, NULL, depth); - } - } else { - /* Attribute data */ - type = H5Aget_type(obj_id); - - if (H5Tget_class(type) == H5T_REFERENCE) { - /* references are done differently than - the standard output: - XML dumps a path to the object - referenced. - */ - status = xml_print_refs(obj_id, ATTRIBUTE_DATA); - H5Tclose(type); - } else if (H5Tget_class(type) == H5T_STRING) { - status = xml_print_strs(obj_id, ATTRIBUTE_DATA); + type = H5Dget_type(obj_id); + if (H5Tget_class(type) == H5T_REFERENCE) { + status = xml_print_refs(obj_id, DATASET_DATA); + } else if (H5Tget_class(type) == H5T_STRING) { + status = xml_print_strs(obj_id, DATASET_DATA); + } else { + status = h5tools_dump_dset(stdout, outputformat, obj_id, -1, NULL, depth); + } } else { - /* all other data */ + /* Attribute data */ + type = H5Aget_type(obj_id); + + if (H5Tget_class(type) == H5T_REFERENCE) { + /* references are done differently than + the standard output: + XML dumps a path to the object + referenced. + */ + status = xml_print_refs(obj_id, ATTRIBUTE_DATA); + H5Tclose(type); + } else if (H5Tget_class(type) == H5T_STRING) { + status = xml_print_strs(obj_id, ATTRIBUTE_DATA); + } else { + /* all other data */ p_type = h5tools_get_native_type(type); - H5Tclose(type); + H5Tclose(type); - space = H5Aget_space(obj_id); + space = H5Aget_space(obj_id); - ndims = H5Sget_simple_extent_dims(space, size, NULL); + ndims = H5Sget_simple_extent_dims(space, size, NULL); - for (i = 0; i < ndims; i++) - nelmts *= size[i]; + for (i = 0; i < ndims; i++) + nelmts *= size[i]; - buf = - malloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type)))); - assert(buf); + buf = malloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type)))); + assert(buf); - if (H5Aread(obj_id, p_type, buf) >= 0) + if (H5Aread(obj_id, p_type, buf) >= 0) status = h5tools_dump_mem(stdout, outputformat, obj_id, - p_type, space, buf, depth); + p_type, space, buf, depth); - free(buf); - H5Tclose(p_type); - H5Sclose(space); - H5Tclose(type); - } + free(buf); + H5Tclose(p_type); + H5Sclose(space); + H5Tclose(type); + } } if (status == FAIL) { - indentation(indent + COL); - printf("Unable to print data.\n"); - status = 1; + indentation(indent + COL); + printf("Unable to print data.\n"); + status = 1; } indentation(indent + COL); @@ -4917,104 +4855,104 @@ xml_dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) free(t_aname); if ((attr_id = H5Aopen_name(attr, attr_name)) >= 0) { - type = H5Aget_type(attr_id); - space = H5Aget_space(attr_id); + type = H5Aget_type(attr_id); + space = H5Aget_space(attr_id); space_type = H5Sget_simple_extent_type(space); - dump_function_table->dump_dataspace_function(space); - dump_function_table->dump_datatype_function(type); - - if (display_attr_data && space_type!=H5S_NULL) { - switch (H5Tget_class(type)) { - case H5T_INTEGER: - case H5T_FLOAT: - case H5T_STRING: - case H5T_BITFIELD: - case H5T_OPAQUE: - case H5T_ENUM: - case H5T_ARRAY: - dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0); - break; + dump_function_table->dump_dataspace_function(space); + dump_function_table->dump_datatype_function(type); + + if (display_attr_data && space_type!=H5S_NULL) { + switch (H5Tget_class(type)) { + case H5T_INTEGER: + case H5T_FLOAT: + case H5T_STRING: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_ENUM: + case H5T_ARRAY: + dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0); + break; - case H5T_TIME: - indent += COL; - indentation(indent); - printf("<%sData>\n",xmlnsprefix); - indentation(indent); - printf("<!-- Time data not yet implemented. -->\n"); - indentation(indent); - printf("<%sNoData/>\n",xmlnsprefix); - indentation(indent); - printf("<hdf5:Data>\n"); - printf("</%sData>\n",xmlnsprefix); - indent -= COL; - break; + case H5T_TIME: + indent += COL; + indentation(indent); + printf("<%sData>\n",xmlnsprefix); + indentation(indent); + printf("<!-- Time data not yet implemented. -->\n"); + indentation(indent); + printf("<%sNoData/>\n",xmlnsprefix); + indentation(indent); + printf("<hdf5:Data>\n"); + printf("</%sData>\n",xmlnsprefix); + indent -= COL; + break; - case H5T_COMPOUND: - indentation(indent); - printf("<!-- Note: format of compound data not specified -->\n"); - dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0); - break; + case H5T_COMPOUND: + indentation(indent); + printf("<!-- Note: format of compound data not specified -->\n"); + dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0); + break; - case H5T_REFERENCE: - indentation(indent); - printf("<%sData>\n",xmlnsprefix); - indentation(indent); - if (!H5Tequal(type, H5T_STD_REF_OBJ)) { - printf("<!-- Note: Region references not supported -->\n"); - indentation(indent); - printf("<%sNoData />\n",xmlnsprefix); - } else { - printf("<%sDataFromFile>\n",xmlnsprefix); - xml_print_refs(attr_id, ATTRIBUTE_DATA); - indentation(indent); - printf("</%sDataFromFile>\n",xmlnsprefix); - } - indentation(indent); - printf("</%sData>\n",xmlnsprefix); - break; + case H5T_REFERENCE: + indentation(indent); + printf("<%sData>\n",xmlnsprefix); + indentation(indent); + if (!H5Tequal(type, H5T_STD_REF_OBJ)) { + printf("<!-- Note: Region references not supported -->\n"); + indentation(indent); + printf("<%sNoData />\n",xmlnsprefix); + } else { + printf("<%sDataFromFile>\n",xmlnsprefix); + xml_print_refs(attr_id, ATTRIBUTE_DATA); + indentation(indent); + printf("</%sDataFromFile>\n",xmlnsprefix); + } + indentation(indent); + printf("</%sData>\n",xmlnsprefix); + break; - case H5T_VLEN: - printf("<!-- Note: format of VL data not specified -->\n"); - dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0); - break; - default: - indentation(indent); - printf("<%sData>\n",xmlnsprefix); - indentation(indent); - printf("<!-- Unknown datatype: %d -->\n", H5Tget_class(type)); - indentation(indent); - printf("<%sNoData/>\n",xmlnsprefix); - indentation(indent); - printf("</%sData>\n",xmlnsprefix); - break; + case H5T_VLEN: + printf("<!-- Note: format of VL data not specified -->\n"); + dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0); + break; + default: + indentation(indent); + printf("<%sData>\n",xmlnsprefix); + indentation(indent); + printf("<!-- Unknown datatype: %d -->\n", H5Tget_class(type)); + indentation(indent); + printf("<%sNoData/>\n",xmlnsprefix); + indentation(indent); + printf("</%sData>\n",xmlnsprefix); + break; + } + } else { + /* The case of an attribute never yet written ?? + * Or dataspace is H5S_NULL. */ + indentation(indent + COL); + printf("<%sData>\n",xmlnsprefix); + indentation(indent + COL + COL); + printf("<%sNoData/>\n",xmlnsprefix); + indentation(indent + COL); + printf("</%sData>\n",xmlnsprefix); } - } else { - /* The case of an attribute never yet written ?? - * Or dataspace is H5S_NULL. */ - indentation(indent + COL); - printf("<%sData>\n",xmlnsprefix); - indentation(indent + COL + COL); - printf("<%sNoData/>\n",xmlnsprefix); - indentation(indent + COL); - printf("</%sData>\n",xmlnsprefix); - } - H5Tclose(type); - H5Sclose(space); - H5Aclose(attr_id); - indentation(indent); - printf("</%sAttribute>\n", xmlnsprefix ); - return SUCCEED; + H5Tclose(type); + H5Sclose(space); + H5Aclose(attr_id); + indentation(indent); + printf("</%sAttribute>\n", xmlnsprefix ); + return SUCCEED; } else { - /* ?? failed */ - indentation(indent + COL); - printf("<!-- h5dump error: unable to open attribute. -->\n"); - indentation(indent); - printf("</%sAttribute>\n", xmlnsprefix ); - d_status = EXIT_FAILURE; - return FAIL; + /* ?? failed */ + indentation(indent + COL); + printf("<!-- h5dump error: unable to open attribute. -->\n"); + indentation(indent); + printf("</%sAttribute>\n", xmlnsprefix ); + d_status = EXIT_FAILURE; + return FAIL; } } @@ -5047,29 +4985,30 @@ xml_dump_named_datatype(hid_t type, const char *name) HDstrcat(tmp, name); indentation(indent); - /*char **/ dtxid = HDmalloc(100); - /*char **/ parentxid = HDmalloc(100); - /*char **/t_tmp = xml_escape_the_name(tmp); - /*char **/t_prefix = xml_escape_the_name(prefix); - /*char **/t_name = xml_escape_the_name(name); - xml_name_to_XID(tmp,dtxid,100,1); - xml_name_to_XID(prefix,parentxid,100,1); - if (strncmp(name, "#", 1) == 0) { - /* Special: this is an 'anonymous' NDT, deleted but - still in use. - We follow the dumper's undocumented practice, and - use its object id as its name. - Exactly the same as normal, but a separate case - in the event we want to do something else in - the future. - */ - printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" " + dtxid = HDmalloc(100); + parentxid = HDmalloc(100); + t_tmp = xml_escape_the_name(tmp); + t_prefix = xml_escape_the_name(prefix); + t_name = xml_escape_the_name(name); + + xml_name_to_XID(tmp, dtxid, 100, 1); + xml_name_to_XID(prefix, parentxid, 100, 1); + if(HDstrncmp(name, "#", 1) == 0) { + /* Special: this is an 'anonymous' NDT, deleted but + still in use. + We follow the dumper's undocumented practice, and + use its object id as its name. + Exactly the same as normal, but a separate case + in the event we want to do something else in + the future. + */ + printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" " "Parents=\"%s\" H5ParentPaths=\"%s\">\n", xmlnsprefix, name, dtxid, parentxid,(HDstrcmp(prefix, "") ? t_prefix : "/")); } else { - printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" " + printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" " "H5Path=\"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n", xmlnsprefix, t_name, dtxid, @@ -5114,70 +5053,65 @@ xml_dump_named_datatype(hid_t type, const char *name) static void xml_dump_group(hid_t gid, const char *name) { - H5G_stat_t statbuf; - haddr_t objno; /* Compact form of object's location */ + H5O_info_t oinfo; char *cp; hid_t dset, type; char type_name[1024], *tmp = NULL; char *par = NULL; int isRoot = 0; - int xtype; char *ptrstr; char *t_objname; char *par_name; - if (HDstrcmp(name, "/") == 0) { - isRoot = 1; - tmp = HDmalloc(2); - HDstrcpy(tmp, "/"); + if(HDstrcmp(name, "/") == 0) { + isRoot = 1; + tmp = HDmalloc(2); + HDstrcpy(tmp, "/"); } else { - tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); - HDstrcpy(tmp, prefix); - par = HDstrdup(tmp); - cp = HDstrrchr(par, '/'); - if (cp != NULL) { - if ((cp == par) && HDstrlen(par) > 1) { - *(cp + 1) = '\0'; - } else { - *cp = '\0'; + tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + HDstrcpy(tmp, prefix); + par = HDstrdup(tmp); + cp = HDstrrchr(par, '/'); + if(cp) { + if((cp == par) && HDstrlen(par) > 1) + *(cp + 1) = '\0'; + else + *cp = '\0'; } } - } indentation(indent); - indent += COL; - H5Gget_objinfo(gid, ".", TRUE, &statbuf); - objno = (haddr_t)statbuf.objno[0] | ((haddr_t)statbuf.objno[1] << (8 * sizeof(long))); - if (statbuf.nlink > 1) { + H5Oget_info(gid, ".", &oinfo, H5P_DEFAULT); + if(oinfo.rc > 1) { obj_t *found_obj; /* Found object */ - /* Group with more than one link to it... */ - found_obj = search_obj(group_table, objno); + /* Group with more than one link to it... */ + found_obj = search_obj(group_table, oinfo.addr); - if (found_obj == NULL) { - indentation(indent); - error_msg(progname, "internal error (file %s:line %d)\n", - __FILE__, __LINE__); - d_status = EXIT_FAILURE; - } else { + if (found_obj == NULL) { + indentation(indent); + error_msg(progname, "internal error (file %s:line %d)\n", + __FILE__, __LINE__); + d_status = EXIT_FAILURE; + } else { char *t_name = xml_escape_the_name(name); char *grpxid = malloc(100); char *parentxid = malloc(100); - if (found_obj->displayed) { + if(found_obj->displayed) { /* already seen: enter a groupptr */ - if (isRoot) { + if(isRoot) { /* probably can't happen! */ - xml_name_to_XID("/",grpxid,100,1); + xml_name_to_XID("/", grpxid, 100, 1); printf("<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n", - xmlnsprefix,grpxid,"/"); + xmlnsprefix, grpxid, "/"); } else { t_objname = xml_escape_the_name(found_obj->objname); par_name = xml_escape_the_name(par); - xml_name_to_XID(tmp,grpxid,100,1); - xml_name_to_XID(par,parentxid,100,1); + xml_name_to_XID(tmp, grpxid, 100, 1); + xml_name_to_XID(par, parentxid, 100, 1); printf("<%sGroup Name=\"%s\" OBJ-XID=\"%s-%d\" H5Path=\"%s\" " "Parents=\"%s\" H5ParentPaths=\"%s\">\n", xmlnsprefix,t_name, grpxid, get_next_xid(), @@ -5198,22 +5132,22 @@ xml_dump_group(hid_t gid, const char *name) ptrstr, t_objname, parentxid, par_name); free(t_objname); free(par_name); - } else { /* first time this group has been seen -- describe it */ - if (isRoot) { - xml_name_to_XID("/",grpxid,100,1); + if(isRoot) { + xml_name_to_XID("/", grpxid, 100, 1); printf("<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n", - xmlnsprefix,grpxid,"/"); + xmlnsprefix, grpxid, "/"); } else { char *t_tmp = xml_escape_the_name(tmp); + par_name = xml_escape_the_name(par); - xml_name_to_XID(tmp,grpxid,100,1); - xml_name_to_XID(par,parentxid,100,1); + xml_name_to_XID(tmp, grpxid, 100, 1); + xml_name_to_XID(par, parentxid, 100, 1); printf("<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" " "Parents=\"%s\" H5ParentPaths=\"%s\" >\n", - xmlnsprefix,t_name, grpxid, t_tmp, parentxid, par_name); + xmlnsprefix,t_name, grpxid, t_tmp, parentxid, par_name); free(t_tmp); free(par_name); } @@ -5223,12 +5157,12 @@ xml_dump_group(hid_t gid, const char *name) H5Aiterate(gid, NULL, dump_function_table->dump_attribute_function, NULL); - if (!strcmp(name, "/") && unamedtype) { + if(isRoot && unamedtype) { unsigned u; /* Very special case: dump unamed type in root group */ - for (u = 0; u < type_table->nobjs; u++) { - if (!type_table->objs[u].recorded) { + for(u = 0; u < type_table->nobjs; u++) { + if(!type_table->objs[u].recorded) { dset = H5Dopen(gid, type_table->objs[u].objname); type = H5Dget_type(dset); sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno); @@ -5239,17 +5173,8 @@ xml_dump_group(hid_t gid, const char *name) } } - /* iterate through all the members */ - xtype = H5G_TYPE; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_DATASET; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_GROUP; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_LINK; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_UDLINK; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); + /* iterate through all the links */ + H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, NULL, H5P_DEFAULT); } free(t_name); free(grpxid); @@ -5258,41 +5183,43 @@ xml_dump_group(hid_t gid, const char *name) } else { /* only link -- must be first time! */ - char *t_name = xml_escape_the_name(name); + char *t_name = xml_escape_the_name(name); char *grpxid = malloc(100); char *parentxid = malloc(100); - if (isRoot) { - xml_name_to_XID("/",grpxid,100,1); + + if(isRoot) { + xml_name_to_XID("/", grpxid, 100, 1); printf("<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n", - xmlnsprefix,grpxid,"/"); + xmlnsprefix, grpxid, "/"); } else { char *t_tmp = xml_escape_the_name(tmp); + par_name = xml_escape_the_name(par); - xml_name_to_XID(tmp,grpxid,100,1); - xml_name_to_XID(par,parentxid,100,1); + xml_name_to_XID(tmp, grpxid, 100, 1); + xml_name_to_XID(par, parentxid, 100, 1); printf("<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" >\n", - xmlnsprefix,t_name, grpxid, t_tmp, - parentxid, par_name); + "Parents=\"%s\" H5ParentPaths=\"%s\" >\n", + xmlnsprefix, t_name, grpxid, t_tmp, + parentxid, par_name); free(t_tmp); free(par_name); } - free(t_name); + free(t_name); free(grpxid); free(parentxid); /* 1. do all the attributes of the group */ H5Aiterate(gid, NULL, dump_function_table->dump_attribute_function, NULL); - if (!strcmp(name, "/") && unamedtype) { + if(isRoot && unamedtype) { unsigned u; /* Very special case: dump unamed type in root group */ - for (u = 0; u < type_table->nobjs; u++) { - if (!type_table->objs[u].recorded) { + for(u = 0; u < type_table->nobjs; u++) { + if(!type_table->objs[u].recorded) { dset = H5Dopen(gid, type_table->objs[u].objname); type = H5Dget_type(dset); - sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno); + sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno); dump_function_table->dump_named_datatype_function(type, type_name); H5Tclose(type); H5Dclose(dset); @@ -5300,26 +5227,16 @@ xml_dump_group(hid_t gid, const char *name) } } - /* iterate through all the members */ - xtype = H5G_TYPE; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_DATASET; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_GROUP; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_LINK; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); - xtype = H5G_UDLINK; - H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, (void *) &xtype, H5P_DEFAULT); + /* iterate through all the links */ + H5Literate(gid, ".", H5_INDEX_NAME, H5_ITER_INC, NULL, dump_all, NULL, H5P_DEFAULT); } indent -= COL; indentation(indent); - if (isRoot) { - printf("</%sRootGroup>\n",xmlnsprefix); - } else { - printf("</%sGroup>\n" ,xmlnsprefix); - } + if(isRoot) + printf("</%sRootGroup>\n", xmlnsprefix); + else + printf("</%sGroup>\n" , xmlnsprefix); free(tmp); } @@ -5347,53 +5264,55 @@ xml_print_refs(hid_t did, int source) hsize_t i; if (source == DATASET_DATA) { - type = H5Dget_type(did); + type = H5Dget_type(did); } else if (source == ATTRIBUTE_DATA) { - type = H5Aget_type(did); + type = H5Aget_type(did); } else { - /* return an error */ - return FAIL; + /* return an error */ + return FAIL; } if (H5Tget_class(type) != H5T_REFERENCE) { - /* return an error */ - return FAIL; - } - if (!H5Tequal(type, H5T_STD_REF_OBJ)) { - /* region ref not supported yet... */ - /* return an error */ - return FAIL; - } - if (source == DATASET_DATA) { - space = H5Dget_space(did); - ssiz = H5Sget_simple_extent_npoints(space); - ssiz *= H5Tget_size(type); - - buf = calloc((size_t)ssiz, sizeof(char)); - if (buf == NULL) { + /* return an error */ return FAIL; } - e = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - /* need to check result here */ - if (e < 0) { - free(buf); + if (!H5Tequal(type, H5T_STD_REF_OBJ)) { + /* region ref not supported yet... */ + /* return an error */ return FAIL; } + if (source == DATASET_DATA) { + space = H5Dget_space(did); + ssiz = H5Sget_simple_extent_npoints(space); + ssiz *= H5Tget_size(type); + buf = calloc((size_t)ssiz, sizeof(char)); + if(buf == NULL) + return FAIL; + e = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + /* need to check result here */ + if(e < 0) { + free(buf); + return FAIL; + } } else if (source == ATTRIBUTE_DATA) { - space = H5Aget_space(did); - ssiz = H5Sget_simple_extent_npoints(space); - ssiz *= H5Tget_size(type); + space = H5Aget_space(did); + ssiz = H5Sget_simple_extent_npoints(space); + ssiz *= H5Tget_size(type); - buf = calloc((size_t)ssiz, sizeof(char)); - if (buf == NULL) { - free(buf); - return FAIL; - } - e = H5Aread(did, H5T_STD_REF_OBJ, buf); - /* need to check the result here */ + buf = calloc((size_t)ssiz, sizeof(char)); + if (buf == NULL) { + free(buf); + return FAIL; + } + e = H5Aread(did, H5T_STD_REF_OBJ, buf); + /* need to check the result here */ + if(e < 0) { + free(buf); + return FAIL; + } } else { - /* error */ - return FAIL; + /* error */ + return FAIL; } refbuf = (hobj_ref_t *) buf; @@ -5402,19 +5321,19 @@ xml_print_refs(hid_t did, int source) for (i = 0; i < ssiz; i++) { const char *path; - path = lookup_ref_path(*refbuf); - indentation(indent + COL); + path = lookup_ref_path(*refbuf); + indentation(indent + COL); - if (!path) { - printf("\"%s\"\n", "NULL"); - } else { + if (!path) { + printf("\"%s\"\n", "NULL"); + } else { char *t_path = xml_escape_the_string(path, -1); - printf("\"%s\"\n", t_path); + printf("\"%s\"\n", t_path); free(t_path); - } + } - refbuf++; + refbuf++; } free(buf); @@ -5449,54 +5368,50 @@ xml_print_strs(hid_t did, int source) htri_t is_vlstr; if (source == DATASET_DATA) { - type = H5Dget_type(did); + type = H5Dget_type(did); } else if (source == ATTRIBUTE_DATA) { - type = H5Aget_type(did); + type = H5Aget_type(did); } else { - /* return an error */ - return FAIL; + /* return an error */ + return FAIL; } if (H5Tget_class(type) != H5T_STRING) { - /* return an error */ - return FAIL; + /* return an error */ + return FAIL; } is_vlstr = H5Tis_variable_str(type); if (source == DATASET_DATA) { - space = H5Dget_space(did); - ssiz = H5Sget_simple_extent_npoints(space); - ssiz *= H5Tget_size(type); - - buf = malloc((size_t)ssiz); - - if (buf == NULL) { - return FAIL; - } + space = H5Dget_space(did); + ssiz = H5Sget_simple_extent_npoints(space); + ssiz *= H5Tget_size(type); - e = H5Dread(did, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + buf = malloc((size_t)ssiz); + if(buf == NULL) + return FAIL; - if (e < 0) { - free(buf); - return FAIL; - } + e = H5Dread(did, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (e < 0) { + free(buf); + return FAIL; + } } else if (source == ATTRIBUTE_DATA) { - space = H5Aget_space(did); - ssiz = H5Sget_simple_extent_npoints(space); - ssiz *= H5Tget_size(type); + space = H5Aget_space(did); + ssiz = H5Sget_simple_extent_npoints(space); + ssiz *= H5Tget_size(type); - buf = malloc((size_t)ssiz); - if (buf == NULL) { - return FAIL; - } + buf = malloc((size_t)ssiz); + if(buf == NULL) + return FAIL; - e = H5Aread(did, type, buf); - if (e < 0) { - free(buf); - return FAIL; - } + e = H5Aread(did, type, buf); + if (e < 0) { + free(buf); + return FAIL; + } } else { - /* error */ - return FAIL; + /* error */ + return FAIL; } /* pull out each string... */ @@ -5516,16 +5431,16 @@ xml_print_strs(hid_t did, int source) HDstrncpy(onestring, bp, tsiz); str_size = tsiz; } - indentation(indent + COL); + indentation(indent + COL); - if (!onestring) { - printf("NULL\n"); - } else { + if (!onestring) { + printf("NULL\n"); + } else { char *t_onestring = xml_escape_the_string(onestring, (int)str_size); - printf("\"%s\"\n", t_onestring); + printf("\"%s\"\n", t_onestring); free(t_onestring); - } + } bp += tsiz; } @@ -5560,72 +5475,72 @@ check_filters(hid_t dcpl) nfilt = H5Pget_nfilters(dcpl); if (nfilt <= 0) - return; + return; for (i = 0; i < nfilt; i++) { #ifdef H5_WANT_H5_V1_6_COMPAT - filter = H5Pget_filter(dcpl, (unsigned)i, &flags, + filter = H5Pget_filter(dcpl, (unsigned)i, &flags, (size_t *) &cd_nelmts, cd_values, 120, namebuf); #else - filter = H5Pget_filter(dcpl, (unsigned)i, &flags, + filter = H5Pget_filter(dcpl, (unsigned)i, &flags, (size_t *) &cd_nelmts, cd_values, 120, namebuf, NULL); #endif /* H5_WANT_H5_V1_6_COMPAT */ - if (filter == H5Z_FILTER_DEFLATE) { - indentation(indent + COL); - printf("<%sDeflate Level=\"",xmlnsprefix); + if (filter == H5Z_FILTER_DEFLATE) { + indentation(indent + COL); + printf("<%sDeflate Level=\"",xmlnsprefix); if (cd_nelmts < 1) { - /* not sure what this means? */ - printf("6"); + /* not sure what this means? */ + printf("6"); } else { - printf("%d",cd_values[0]); + printf("%d",cd_values[0]); } - printf("\"/>\n"); - } else if (filter == H5Z_FILTER_FLETCHER32) { - indentation(indent + COL); - printf("<%sFletcher32 />",xmlnsprefix); - } else if (filter == H5Z_FILTER_SHUFFLE) { - indentation(indent + COL); - printf("<%sShuffle />",xmlnsprefix); - } else if (filter == H5Z_FILTER_SZIP) { + printf("\"/>\n"); + } else if (filter == H5Z_FILTER_FLETCHER32) { + indentation(indent + COL); + printf("<%sFletcher32 />",xmlnsprefix); + } else if (filter == H5Z_FILTER_SHUFFLE) { + indentation(indent + COL); + printf("<%sShuffle />",xmlnsprefix); + } else if (filter == H5Z_FILTER_SZIP) { - indentation(indent + COL); - printf("<%sSZIP ",xmlnsprefix); + indentation(indent + COL); + printf("<%sSZIP ",xmlnsprefix); if (cd_nelmts < 2) { - /* no pixels ? */ - printf("Pixels_per_block=\"-1\" "); + /* no pixels ? */ + printf("Pixels_per_block=\"-1\" "); } else { - printf("Pixels_per_block=\"%d\" ",cd_values[1]); + printf("Pixels_per_block=\"%d\" ",cd_values[1]); } - /* analyse the options mask */ - if (cd_values[0] & H5_SZIP_CHIP_OPTION_MASK) { - printf("Mode =\"Hardware\" "); - } else if (cd_values[0] & H5_SZIP_ALLOW_K13_OPTION_MASK) { - printf("Mode =\"K13\" "); - } - printf("Coding=\""); - if (cd_values[0] & H5_SZIP_EC_OPTION_MASK) { - printf("Entropy"); - } else if (cd_values[0] & H5_SZIP_NN_OPTION_MASK) { - printf("NN"); - } - printf("\" "); + /* analyse the options mask */ + if (cd_values[0] & H5_SZIP_CHIP_OPTION_MASK) { + printf("Mode =\"Hardware\" "); + } else if (cd_values[0] & H5_SZIP_ALLOW_K13_OPTION_MASK) { + printf("Mode =\"K13\" "); + } + printf("Coding=\""); + if (cd_values[0] & H5_SZIP_EC_OPTION_MASK) { + printf("Entropy"); + } else if (cd_values[0] & H5_SZIP_NN_OPTION_MASK) { + printf("NN"); + } + printf("\" "); - printf("ByteOrder=\""); - if (cd_values[0] & H5_SZIP_LSB_OPTION_MASK) { - printf("LSB"); - } else if (cd_values[0] & H5_SZIP_MSB_OPTION_MASK) { - printf("MSB"); - } - printf("\" "); + printf("ByteOrder=\""); + if (cd_values[0] & H5_SZIP_LSB_OPTION_MASK) { + printf("LSB"); + } else if (cd_values[0] & H5_SZIP_MSB_OPTION_MASK) { + printf("MSB"); + } + printf("\" "); - if (cd_values[0] & H5_SZIP_RAW_OPTION_MASK) { - printf("Header=\"Raw\""); - } + if (cd_values[0] & H5_SZIP_RAW_OPTION_MASK) { + printf("Header=\"Raw\""); + } printf("/>\n"); - } else { - /* unknown option */ - } + } else { + /* unknown option */ + } } } @@ -5675,76 +5590,76 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) /* all other data */ switch (H5Tget_class(type)) { case H5T_INTEGER: - indentation(indent); - printf("<%sDataFromFile>\n",xmlnsprefix); - indentation(indent); - printf("\"%d\"\n",*(int *)buf); - indentation(indent); - printf("</%sDataFromFile>\n",xmlnsprefix); - break; + indentation(indent); + printf("<%sDataFromFile>\n",xmlnsprefix); + indentation(indent); + printf("\"%d\"\n",*(int *)buf); + indentation(indent); + printf("</%sDataFromFile>\n",xmlnsprefix); + break; case H5T_FLOAT: - indentation(indent); - printf("<%sDataFromFile>\n",xmlnsprefix); - indentation(indent); - printf("\"%f\"\n",*(float *)buf); - indentation(indent); - printf("</%sDataFromFile>\n",xmlnsprefix); - break; + indentation(indent); + printf("<%sDataFromFile>\n",xmlnsprefix); + indentation(indent); + printf("\"%f\"\n",*(float *)buf); + indentation(indent); + printf("</%sDataFromFile>\n",xmlnsprefix); + break; case H5T_BITFIELD: case H5T_OPAQUE: - indentation(indent); - printf("<%sDataFromFile>\n",xmlnsprefix); - sz = H5Tget_size(type); - indentation(indent); - printf("\""); - for (i = 0; i < sz; i++) { - printf("%x ",*(unsigned int *)buf); - buf = (char *)buf + sizeof(unsigned int); - } - printf("\"\n"); - indentation(indent); - printf("</%sDataFromFile>\n",xmlnsprefix); - break; + indentation(indent); + printf("<%sDataFromFile>\n",xmlnsprefix); + sz = H5Tget_size(type); + indentation(indent); + printf("\""); + for (i = 0; i < sz; i++) { + printf("%x ",*(unsigned int *)buf); + buf = (char *)buf + sizeof(unsigned int); + } + printf("\"\n"); + indentation(indent); + printf("</%sDataFromFile>\n",xmlnsprefix); + break; case H5T_ENUM: - indentation(indent); - printf("<%sDataFromFile>\n",xmlnsprefix); - name = H5Tget_member_name(type, *(unsigned *)buf); - indentation(indent); - printf("\"%s\"\n",name); - indentation(indent); - printf("</%sDataFromFile>\n",xmlnsprefix); - break; + indentation(indent); + printf("<%sDataFromFile>\n",xmlnsprefix); + name = H5Tget_member_name(type, *(unsigned *)buf); + indentation(indent); + printf("\"%s\"\n",name); + indentation(indent); + printf("</%sDataFromFile>\n",xmlnsprefix); + break; case H5T_ARRAY: - indentation(indent); + indentation(indent); printf("<!-- Array fill values not yet implemented. -->\n"); indentation(indent); printf("<%sNoData />\n",xmlnsprefix); break; case H5T_TIME: - indentation(indent); + indentation(indent); printf("<!-- Time fill not yet implemented. -->\n"); indentation(indent); printf("<%sNoData />\n",xmlnsprefix); break; case H5T_COMPOUND: - indentation(indent); + indentation(indent); printf("<!-- Compound fill not yet implemented. -->\n"); indentation(indent); printf("<%sNoData />\n",xmlnsprefix); break; - case H5T_VLEN: - indentation(indent); + case H5T_VLEN: + indentation(indent); printf("<!-- VL fill not yet implemented. -->\n"); indentation(indent); printf("<%sNoData />\n",xmlnsprefix); break; - default: - indentation(indent); - printf("<!-- Unknown fill datatype: %d -->\n", H5Tget_class(type)); - indentation(indent); - printf("<%sNoData/>\n",xmlnsprefix); - break; - } + default: + indentation(indent); + printf("<!-- Unknown fill datatype: %d -->\n", H5Tget_class(type)); + indentation(indent); + printf("<%sNoData/>\n",xmlnsprefix); + break; + } } free(buf); indent -= COL; @@ -5811,67 +5726,67 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset) space = H5Dget_space(did); /* Print information about storage layout */ - if (H5D_CHUNKED == H5Pget_layout(dcpl)) { - maxdims = H5Sget_simple_extent_ndims(space); - chsize = (hsize_t *) malloc(maxdims * sizeof(hsize_t)); - indent += COL; - indentation(indent); - printf("<%sStorageLayout>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sChunkedLayout ",xmlnsprefix); - ndims = H5Pget_chunk(dcpl, maxdims, chsize); - printf("Ndims=\"%d\">\n", ndims); + if(H5D_CHUNKED == H5Pget_layout(dcpl)) { + maxdims = H5Sget_simple_extent_ndims(space); + chsize = (hsize_t *) malloc(maxdims * sizeof(hsize_t)); + indent += COL; + indentation(indent); + printf("<%sStorageLayout>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sChunkedLayout ",xmlnsprefix); + ndims = H5Pget_chunk(dcpl, maxdims, chsize); + printf("Ndims=\"%d\">\n", ndims); - indent += COL; + indent += COL; - for (i = 0; i < ndims; i++) { - indentation(indent); - HDfprintf(stdout, "<%sChunkDimension DimSize=\"%Hu\" />\n", - xmlnsprefix, chsize[i]); - } + for (i = 0; i < ndims; i++) { + indentation(indent); + HDfprintf(stdout, "<%sChunkDimension DimSize=\"%Hu\" />\n", + xmlnsprefix, chsize[i]); + } - indentation(indent); - printf("<%sRequiredFilter>\n",xmlnsprefix); - indent += COL; - check_filters(dcpl); - indent -= COL; - indentation(indent); - printf("</%sRequiredFilter>\n",xmlnsprefix); + indentation(indent); + printf("<%sRequiredFilter>\n",xmlnsprefix); + indent += COL; + check_filters(dcpl); + indent -= COL; + indentation(indent); + printf("</%sRequiredFilter>\n",xmlnsprefix); - indent -= COL; + indent -= COL; - indentation(indent); - printf("</%sChunkedLayout>\n",xmlnsprefix); - indent -= COL; - indentation(indent); - printf("</%sStorageLayout>\n",xmlnsprefix); - indent -= COL; - free(chsize); + indentation(indent); + printf("</%sChunkedLayout>\n",xmlnsprefix); + indent -= COL; + indentation(indent); + printf("</%sStorageLayout>\n",xmlnsprefix); + indent -= COL; + free(chsize); } else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl)) { - indent += COL; - indentation(indent); - printf("<%sStorageLayout>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sContiguousLayout/>\n",xmlnsprefix); - indent -= COL; - indentation(indent); - printf("</%sStorageLayout>\n",xmlnsprefix); - indent -= COL; - indentation(indent); + indent += COL; + indentation(indent); + printf("<%sStorageLayout>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sContiguousLayout/>\n",xmlnsprefix); + indent -= COL; + indentation(indent); + printf("</%sStorageLayout>\n",xmlnsprefix); + indent -= COL; + indentation(indent); } else if (H5D_COMPACT == H5Pget_layout(dcpl)) { - indent += COL; - indentation(indent); - printf("<%sStorageLayout>\n",xmlnsprefix); - indent += COL; - indentation(indent); - printf("<%sCompactLayout/>\n",xmlnsprefix); - indent -= COL; - indentation(indent); - printf("</%sStorageLayout>\n",xmlnsprefix); - indent -= COL; - indentation(indent); + indent += COL; + indentation(indent); + printf("<%sStorageLayout>\n",xmlnsprefix); + indent += COL; + indentation(indent); + printf("<%sCompactLayout/>\n",xmlnsprefix); + indent -= COL; + indentation(indent); + printf("</%sStorageLayout>\n",xmlnsprefix); + indent -= COL; + indentation(indent); } /* and check for external.... ?? */ @@ -5883,36 +5798,36 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset) H5Pget_fill_time(dcpl, &ft); printf("FillTime=\""); switch ( ft ) { - case H5D_FILL_TIME_ALLOC: - printf("FillOnAlloc"); - break; - case H5D_FILL_TIME_NEVER: - printf("FillNever"); - break; - case H5D_FILL_TIME_IFSET: - printf("FillIfSet"); - break; - default: - printf("?"); - break; + case H5D_FILL_TIME_ALLOC: + printf("FillOnAlloc"); + break; + case H5D_FILL_TIME_NEVER: + printf("FillNever"); + break; + case H5D_FILL_TIME_IFSET: + printf("FillIfSet"); + break; + default: + printf("?"); + break; } printf("\" "); H5Pget_alloc_time(dcpl, &at); printf("AllocationTime=\""); switch ( at ) { - case H5D_ALLOC_TIME_EARLY: - printf("Early"); - break; - case H5D_ALLOC_TIME_INCR: - printf("Incremental"); - break; - case H5D_ALLOC_TIME_LATE: - printf("Late"); - break; - case H5D_ALLOC_TIME_DEFAULT: - default: - printf("?"); - break; + case H5D_ALLOC_TIME_EARLY: + printf("Early"); + break; + case H5D_ALLOC_TIME_INCR: + printf("Incremental"); + break; + case H5D_ALLOC_TIME_LATE: + printf("Late"); + break; + case H5D_ALLOC_TIME_DEFAULT: + default: + printf("?"); + break; } printf("\""); printf(">\n"); @@ -5948,77 +5863,77 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset) tempi = H5Dget_storage_size(did); if (display_data && (tempi > 0)) { - switch (H5Tget_class(type)) { - case H5T_INTEGER: - case H5T_FLOAT: - case H5T_STRING: - case H5T_BITFIELD: - case H5T_OPAQUE: - case H5T_ENUM: - case H5T_ARRAY: - dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0); - break; + switch (H5Tget_class(type)) { + case H5T_INTEGER: + case H5T_FLOAT: + case H5T_STRING: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_ENUM: + case H5T_ARRAY: + dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0); + break; - case H5T_TIME: - indent += COL; - indentation(indent); - printf("<%sData>\n",xmlnsprefix); - indentation(indent); - printf("<!-- Time data not yet implemented. -->\n"); - indentation(indent); - printf("<%sNoData />\n",xmlnsprefix); - indentation(indent); - printf("<%sData>\n",xmlnsprefix); - indent -= COL; - break; + case H5T_TIME: + indent += COL; + indentation(indent); + printf("<%sData>\n",xmlnsprefix); + indentation(indent); + printf("<!-- Time data not yet implemented. -->\n"); + indentation(indent); + printf("<%sNoData />\n",xmlnsprefix); + indentation(indent); + printf("<%sData>\n",xmlnsprefix); + indent -= COL; + break; - case H5T_COMPOUND: - indentation(indent); - printf("<!-- Note: format of compound data not specified -->\n"); - dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0); - break; + case H5T_COMPOUND: + indentation(indent); + printf("<!-- Note: format of compound data not specified -->\n"); + dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0); + break; - case H5T_REFERENCE: - indentation(indent); - printf("<%sData>\n",xmlnsprefix); - indentation(indent); - if (!H5Tequal(type, H5T_STD_REF_OBJ)) { - printf("<!-- Note: Region references not supported -->\n"); + case H5T_REFERENCE: indentation(indent); - printf("<%sNoData />\n",xmlnsprefix); - } else { - printf("<%sDataFromFile>\n",xmlnsprefix); - xml_print_refs(did, DATASET_DATA); - indentation(indent); - printf("</%sDataFromFile>\n",xmlnsprefix); - } - indentation(indent); - printf("</%sData>\n",xmlnsprefix); - break; + printf("<%sData>\n",xmlnsprefix); + indentation(indent); + if (!H5Tequal(type, H5T_STD_REF_OBJ)) { + printf("<!-- Note: Region references not supported -->\n"); + indentation(indent); + printf("<%sNoData />\n",xmlnsprefix); + } else { + printf("<%sDataFromFile>\n",xmlnsprefix); + xml_print_refs(did, DATASET_DATA); + indentation(indent); + printf("</%sDataFromFile>\n",xmlnsprefix); + } + indentation(indent); + printf("</%sData>\n",xmlnsprefix); + break; - case H5T_VLEN: - printf("<!-- Note: format of VL data not specified -->\n"); - dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0); - break; - default: - indentation(indent); + case H5T_VLEN: + printf("<!-- Note: format of VL data not specified -->\n"); + dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0); + break; + default: + indentation(indent); + printf("<%sData>\n",xmlnsprefix); + indentation(indent); + printf("<!-- Unknown datatype: %d -->\n", H5Tget_class(type)); + indentation(indent); + printf("<%sNoData/>\n",xmlnsprefix); + indentation(indent); + printf("</%sData>\n",xmlnsprefix); + break; + } + } else { + /* no data written */ + indentation(indent + COL); printf("<%sData>\n",xmlnsprefix); - indentation(indent); - printf("<!-- Unknown datatype: %d -->\n", H5Tget_class(type)); - indentation(indent); + indentation(indent + COL + COL); printf("<%sNoData/>\n",xmlnsprefix); - indentation(indent); + indentation(indent + COL); printf("</%sData>\n",xmlnsprefix); - break; - } - } else { - /* no data written */ - indentation(indent + COL); - printf("<%sData>\n",xmlnsprefix); - indentation(indent + COL + COL); - printf("<%sNoData/>\n",xmlnsprefix); - indentation(indent + COL); - printf("</%sData>\n",xmlnsprefix); } H5Tclose(type); @@ -6045,13 +5960,13 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset) static void xml_print_enum(hid_t type) { - char **name = NULL; /*member names */ + char **name = NULL; /*member names */ unsigned char *value = NULL; /*value array */ - unsigned nmembs; /*number of members */ - hid_t super; /*enum base integer type */ - hid_t native = -1; /*native integer data type */ - size_t dst_size; /*destination value type size */ - unsigned i; /*miscellaneous counters */ + unsigned nmembs; /*number of members */ + hid_t super; /*enum base integer type */ + hid_t native = -1; /*native integer datatype */ + size_t dst_size; /*destination value type size */ + unsigned i; /*miscellaneous counters */ size_t j; nmembs = H5Tget_nmembers(type); @@ -6064,22 +5979,22 @@ xml_print_enum(hid_t type) printf("</%sDataType>\n",xmlnsprefix); /* - * Determine what data type to use for the native values. To simplify + * Determine what datatype to use for the native values. To simplify * things we entertain three possibilities: * 1. long_long -- the largest native signed integer * 2. unsigned long_long -- the largest native unsigned integer * 3. raw format */ if (H5Tget_size(type) <= sizeof(long_long)) { - dst_size = sizeof(long_long); + dst_size = sizeof(long_long); - if (H5T_SGN_NONE == H5Tget_sign(type)) { - native = H5T_NATIVE_ULLONG; - } else { - native = H5T_NATIVE_LLONG; - } + if (H5T_SGN_NONE == H5Tget_sign(type)) { + native = H5T_NATIVE_ULLONG; + } else { + native = H5T_NATIVE_LLONG; + } } else { - dst_size = H5Tget_size(type); + dst_size = H5Tget_size(type); } /* Get the names and raw values of all members */ @@ -6087,13 +6002,13 @@ xml_print_enum(hid_t type) value = calloc(nmembs, MAX(H5Tget_size(type), dst_size)); for (i = 0; i < nmembs; i++) { - name[i] = H5Tget_member_name(type, i); - H5Tget_member_value(type, i, value + i * H5Tget_size(type)); + name[i] = H5Tget_member_name(type, i); + H5Tget_member_value(type, i, value + i * H5Tget_size(type)); } - /* Convert values to native data type */ + /* Convert values to native datatype */ if (native > 0) - H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT); + H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT); /* Sort members by increasing value */ /*not implemented yet */ @@ -6103,38 +6018,38 @@ xml_print_enum(hid_t type) for (i = 0; i < nmembs; i++) { char *t_name = xml_escape_the_name(name[i]); - indentation(indent); - printf("<%sEnumElement>\n",xmlnsprefix); - indentation(indent + COL); - printf("%s\n", t_name); + indentation(indent); + printf("<%sEnumElement>\n",xmlnsprefix); + indentation(indent + COL); + printf("%s\n", t_name); free(t_name); - indentation(indent); - printf("</%sEnumElement>\n",xmlnsprefix); - indentation(indent); - printf("<%sEnumValue>\n",xmlnsprefix); - indentation(indent + COL); - if (native < 0) { - printf("0x"); - - for (j = 0; j < dst_size; j++) - printf("%02x", value[i * dst_size + j]); - } else if (H5T_SGN_NONE == H5Tget_sign(native)) { - HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "u", *((unsigned long_long *) - ((void *) (value + i * dst_size)))); - } else { - HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "d", - *((long_long *) ((void *) (value + i * dst_size)))); - } - printf("\n"); - indentation(indent); - printf("</%sEnumValue>\n",xmlnsprefix); + indentation(indent); + printf("</%sEnumElement>\n",xmlnsprefix); + indentation(indent); + printf("<%sEnumValue>\n",xmlnsprefix); + indentation(indent + COL); + if (native < 0) { + printf("0x"); + + for (j = 0; j < dst_size; j++) + printf("%02x", value[i * dst_size + j]); + } else if (H5T_SGN_NONE == H5Tget_sign(native)) { + HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "u", *((unsigned long_long *) + ((void *) (value + i * dst_size)))); + } else { + HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "d", + *((long_long *) ((void *) (value + i * dst_size)))); + } + printf("\n"); + indentation(indent); + printf("</%sEnumValue>\n",xmlnsprefix); } indent -= COL; /* Release resources */ for (i = 0; i < nmembs; i++) - free(name[i]); + free(name[i]); free(name); free(value); @@ -6183,55 +6098,54 @@ h5_fileaccess(void) if (NULL==(name=HDstrtok(s, " \t\n\r"))) return fapl; if (!HDstrcmp(name, "sec2")) { - /* Unix read() and write() system calls */ - if (H5Pset_fapl_sec2(fapl)<0) return -1; + /* Unix read() and write() system calls */ + if (H5Pset_fapl_sec2(fapl)<0) return -1; } else if (!HDstrcmp(name, "stdio")) { - /* Standard C fread() and fwrite() system calls */ - if (H5Pset_fapl_stdio(fapl)<0) return -1; + /* Standard C fread() and fwrite() system calls */ + if (H5Pset_fapl_stdio(fapl)<0) return -1; } else if (!HDstrcmp(name, "core")) { - /* In-core temporary file with 1MB increment */ - if (H5Pset_fapl_core(fapl, 1024*1024, FALSE)<0) return -1; + /* In-core temporary file with 1MB increment */ + if (H5Pset_fapl_core(fapl, 1024*1024, FALSE)<0) return -1; } else if (!HDstrcmp(name, "split")) { - /* Split meta data and raw data each using default driver */ - if (H5Pset_fapl_split(fapl, + /* Split meta data and raw data each using default driver */ + if (H5Pset_fapl_split(fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT)<0) return -1; } else if (!HDstrcmp(name, "multi")) { - /* Multi-file driver, general case of the split driver */ - H5FD_mem_t memb_map[H5FD_MEM_NTYPES]; - hid_t memb_fapl[H5FD_MEM_NTYPES]; - const char *memb_name[H5FD_MEM_NTYPES]; - char sv[H5FD_MEM_NTYPES][1024]; - haddr_t memb_addr[H5FD_MEM_NTYPES]; - H5FD_mem_t mt; - - HDmemset(memb_map, 0, sizeof memb_map); - HDmemset(memb_fapl, 0, sizeof memb_fapl); - HDmemset(memb_name, 0, sizeof memb_name); - HDmemset(memb_addr, 0, sizeof memb_addr); - - assert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES); - for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) { - memb_fapl[mt] = H5P_DEFAULT; - memb_map[mt] = mt; - sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]); - memb_name[mt] = sv[mt]; - memb_addr[mt] = MAX(mt-1,0)*(HADDR_MAX/10); - } + /* Multi-file driver, general case of the split driver */ + H5FD_mem_t memb_map[H5FD_MEM_NTYPES]; + hid_t memb_fapl[H5FD_MEM_NTYPES]; + const char *memb_name[H5FD_MEM_NTYPES]; + char sv[H5FD_MEM_NTYPES][1024]; + haddr_t memb_addr[H5FD_MEM_NTYPES]; + H5FD_mem_t mt; + + HDmemset(memb_map, 0, sizeof memb_map); + HDmemset(memb_fapl, 0, sizeof memb_fapl); + HDmemset(memb_name, 0, sizeof memb_name); + HDmemset(memb_addr, 0, sizeof memb_addr); + + assert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES); + for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) { + memb_fapl[mt] = H5P_DEFAULT; + memb_map[mt] = mt; + sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]); + memb_name[mt] = sv[mt]; + memb_addr[mt] = MAX(mt-1,0)*(HADDR_MAX/10); + } - if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name, - memb_addr, FALSE)<0) { - return -1; - } + if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name, + memb_addr, FALSE) < 0) + return -1; } else if (!HDstrcmp(name, "family")) { hsize_t fam_size = 100*1024*1024; /*100 MB*/ - /* Family of files, each 1MB and using the default driver */ - if ((val=HDstrtok(NULL, " \t\n\r"))) - fam_size = (hsize_t)(HDstrtod(val, NULL) * 1024*1024); - if (H5Pset_fapl_family(fapl, fam_size, H5P_DEFAULT)<0) - return -1; + /* Family of files, each 1MB and using the default driver */ + if ((val=HDstrtok(NULL, " \t\n\r"))) + fam_size = (hsize_t)(HDstrtod(val, NULL) * 1024*1024); + if (H5Pset_fapl_family(fapl, fam_size, H5P_DEFAULT)<0) + return -1; } else if (!HDstrcmp(name, "log")) { long log_flags = H5FD_LOG_LOC_IO; @@ -6240,14 +6154,14 @@ h5_fileaccess(void) log_flags = HDstrtol(val, NULL, 0); if (H5Pset_fapl_log(fapl, NULL, (unsigned)log_flags, 0) < 0) - return -1; + return -1; } else if (!HDstrcmp(name, "direct")) { /* Substitute Direct I/O driver with sec2 driver temporarily because * some output has sec2 driver as the standard. */ - if (H5Pset_fapl_sec2(fapl)<0) return -1; + if (H5Pset_fapl_sec2(fapl)<0) return -1; } else { - /* Unknown driver */ - return -1; + /* Unknown driver */ + return -1; } return fapl; @@ -6297,5 +6211,3 @@ add_prefix(char **prfx, size_t *prfx_len, const char *name) HDstrcat(HDstrcat(*prfx, "/"), name); } /* end add_prefix */ - - |