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-rw-r--r--tools/h5dump/h5dump.c165
-rw-r--r--tools/h5dump/h5dumpgentest.c128
2 files changed, 196 insertions, 97 deletions
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index 5f76c16..163bad8 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -54,8 +54,10 @@ static int display_dcpl = FALSE; /*dcpl */
static int display_fi = FALSE; /*file index */
static int display_ai = TRUE; /*array index */
static int display_escape = FALSE; /*escape non printable characters */
-
-
+static int display_dsets = TRUE; /*display datasets */
+static int display_groups = TRUE; /*display groups */
+static int display_dtypes = TRUE; /*display named datatypes */
+static int display_links = TRUE; /*display soft links */
/**
** Added for XML **
@@ -341,7 +343,7 @@ struct handler_t {
* parameters. The long-named ones can be partially spelled. When
* adding more, make sure that they don't clash with each other.
*/
-static const char *s_opts = "hnpeyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o:s:S:A";
+static const char *s_opts = "hnpeyBHLGTEirVa:c:d:f:g:k:l:t:w:xD:uX:o:s:S:A";
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "hel", no_arg, 'h' },
@@ -592,6 +594,10 @@ usage(const char *prog)
fprintf(stdout, " -o F, --output=F Output raw data into file F\n");
fprintf(stdout, " -t P, --datatype=P Print the specified named data type\n");
fprintf(stdout, " -w N, --width=N Set the number of columns of output\n");
+ fprintf(stdout, " -L Do not print soft links\n");
+ fprintf(stdout, " -G Do not print groups\n");
+ fprintf(stdout, " -T Do not print named datatypes\n");
+ fprintf(stdout, " -E Do not print datasets\n");
fprintf(stdout, " -x, --xml Output in XML using Schema\n");
fprintf(stdout, " -u, --use-dtd Output in XML using DTD\n");
fprintf(stdout, " -D U, --xml-dtd=U Use the DTD or schema at U\n");
@@ -1308,6 +1314,7 @@ dump_all(hid_t group, const char *name, void * op_data)
switch (statbuf.type) {
case H5G_LINK:
+ if (display_links) {
indentation(indent);
targbuf = malloc(statbuf.linklen);
@@ -1396,9 +1403,11 @@ dump_all(hid_t group, const char *name, void * op_data)
}
free(targbuf);
+ }
break;
case H5G_GROUP:
+ if (display_groups) {
if ((obj = H5Gopen(group, name)) < 0) {
error_msg(progname, "unable to dump group \"%s\"\n", name);
d_status = EXIT_FAILURE;
@@ -1417,9 +1426,11 @@ dump_all(hid_t group, const char *name, void * op_data)
H5Gclose(obj);
}
+ }
break;
case H5G_DATASET:
+ if (display_dsets) {
if ((obj = H5Dopen(group, name)) >= 0) {
/* hard link */
H5Gget_objinfo(obj, ".", TRUE, &statbuf);
@@ -1513,10 +1524,11 @@ dump_all(hid_t group, const char *name, void * op_data)
d_status = EXIT_FAILURE;
ret = FAIL;
}
-
+ }
break;
case H5G_TYPE:
+ if (display_dtypes) {
if ((obj = H5Topen(group, name)) < 0) {
error_msg(progname, "unable to dump data type \"%s\"\n", name);
d_status = EXIT_FAILURE;
@@ -1525,7 +1537,7 @@ dump_all(hid_t group, const char *name, void * op_data)
dump_function_table->dump_named_datatype_function(obj, name);
H5Tclose(obj);
}
-
+ }
break;
default:
@@ -1941,7 +1953,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex)
outputformat->pindex=pindex;
if (outputformat->pindex)
{
- outputformat->idx_fmt = "(%s)";
+ outputformat->idx_fmt = "(%s),";
outputformat->idx_n_fmt = "%lu";
outputformat->idx_sep = ",";
outputformat->line_pre = " %s ";
@@ -2102,8 +2114,6 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id)
*
* Programmer: pvn
*
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
static void
@@ -2134,7 +2144,6 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
ioffset=H5Dget_offset(obj_id);
next=H5Pget_external_count(dcpl_id);
strcpy(f_name,"\0");
-
/*-------------------------------------------------------------------------
* STORAGE_LAYOUT
@@ -2204,7 +2213,6 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
indentation(indent + COL);
printf("%s\n",END);
}
-
else
{
/*start indent */
@@ -2226,13 +2234,13 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
*-------------------------------------------------------------------------
*/
nfilters = H5Pget_nfilters(dcpl_id);
+
+ indentation(indent + COL);
+ printf("%s %s\n", FILTERS, BEGIN);
+ indent += COL;
+
if (nfilters)
{
-
- indentation(indent + COL);
- printf("%s %s\n", FILTERS, BEGIN);
- indent += COL;
-
for (i=0; i<nfilters; i++)
{
cd_nelmts = NELMTS(cd_values);
@@ -2267,7 +2275,6 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
printf("%s %s\n",SZIP, BEGIN);
/*start indent */
-
indent += COL;
indentation(indent + COL);
printf("PIXELS_PER_BLOCK %d\n", szip_pixels_per_block);
@@ -2295,7 +2302,6 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
printf("HEADER %s\n", "RAW");
/*end indent */
-
indent -= COL;
indentation(indent + COL);
printf("%s\n",END);
@@ -2326,71 +2332,50 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
break;
}/*switch*/
} /*i*/
-
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
}/*nfilters*/
+ else
+ {
+ indentation(indent + COL);
+ printf("NONE\n");
+ }
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
/*-------------------------------------------------------------------------
* FILLVALUE
*-------------------------------------------------------------------------
*/
-
indentation(indent + COL);
printf("%s %s\n", FILLVALUE, BEGIN);
-
/*start indent */
indent += COL;
-
indentation(indent + COL);
printf("FILL_TIME ");
-
H5Pget_fill_time(dcpl_id, &ft);
switch ( ft )
{
case H5D_FILL_TIME_ALLOC:
- printf("%s", "ALLOC\n");
+ printf("%s", "H5D_FILL_TIME_ALLOC\n");
break;
case H5D_FILL_TIME_NEVER:
- printf("%s", "NEVER\n");
+ printf("%s", "H5D_FILL_TIME_NEVER\n");
break;
case H5D_FILL_TIME_IFSET:
- printf("%s", "IFSET\n");
- break;
- }
-
- indentation(indent + COL);
- printf("%s", "ALLOC_TIME ");
- H5Pget_alloc_time(dcpl_id, &at);
-
- switch (at)
- {
- case H5D_ALLOC_TIME_EARLY:
- printf("%s", "EARLY\n");
- break;
- case H5D_ALLOC_TIME_INCR:
- printf("%s", "INCR\n");
- break;
- case H5D_ALLOC_TIME_LATE:
- printf("%s", "LATE\n");
+ printf("%s", "H5D_FILL_TIME_IFSET\n");
break;
}
-
indentation(indent + COL);
printf("%s ", "VALUE ");
-
H5Pfill_value_defined(dcpl_id, &fvstatus);
-
if (fvstatus == H5D_FILL_VALUE_UNDEFINED)
{
- printf("%s\n", "UNDEFINED");
+ printf("%s\n", "H5D_FILL_VALUE_UNDEFINED");
}
else
{
dump_fill_value(dcpl_id,type_id,obj_id);
}
-
/* end indent */
indent -= COL;
indentation(indent + COL);
@@ -2398,6 +2383,33 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
indentation(indent + COL);
printf("%s\n",END);
+/*-------------------------------------------------------------------------
+ * ALLOCATION_TIME
+ *-------------------------------------------------------------------------
+ */
+ indentation(indent + COL);
+ printf("ALLOCATION_TIME %s\n",BEGIN);
+ /*start indent */
+ indent += COL;
+ indentation(indent + COL);
+ H5Pget_alloc_time(dcpl_id, &at);
+ switch (at)
+ {
+ case H5D_ALLOC_TIME_EARLY:
+ printf("%s", "H5D_ALLOC_TIME_EARLY\n");
+ break;
+ case H5D_ALLOC_TIME_INCR:
+ printf("%s", "H5D_ALLOC_TIME_INCR\n");
+ break;
+ case H5D_ALLOC_TIME_LATE:
+ printf("%s", "H5D_ALLOC_TIME_LATE\n");
+ break;
+ }
+ /* end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
+
}
/*-------------------------------------------------------------------------
@@ -2453,7 +2465,11 @@ dump_fcpl(hid_t fid)
fapl=h5_fileaccess();
fdriver=H5Pget_driver(fapl);
H5Pclose(fapl);
-
+
+/*-------------------------------------------------------------------------
+ * SUPER_BLOCK
+ *-------------------------------------------------------------------------
+ */
printf("%s %s\n",SUPER_BLOCK, BEGIN);
indentation(indent + COL);
printf("%s %d\n","SUPERBLOCK_VERSION", super);
@@ -2464,8 +2480,6 @@ dump_fcpl(hid_t fid)
indentation(indent + COL);
printf("%s %d\n","OBJECTHEADER_VERSION", (int)shhdr);
indentation(indent + COL);
- HDfprintf(stdout,"%s %Hu\n","USERBLOCK_VERSION", userblock);
- indentation(indent + COL);
HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long_long)off_size);
indentation(indent + COL);
HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long_long)len_size);
@@ -2517,7 +2531,15 @@ dump_fcpl(hid_t fid)
printf("%s %s\n","FILE_DRIVER", dname);
indentation(indent + COL);
printf("%s %d\n","ISTORE_K", istore_ik);
-
+ printf("%s\n",END);
+
+/*-------------------------------------------------------------------------
+ * USER_BLOCK
+ *-------------------------------------------------------------------------
+ */
+ printf("USER_BLOCK %s\n",BEGIN);
+ indentation(indent + COL);
+ HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock);
printf("%s\n",END);
}
@@ -2534,30 +2556,20 @@ dump_fcpl(hid_t fid)
*
*-------------------------------------------------------------------------
*/
-
static void dump_list(hid_t fid)
{
- int nobjects;
- trav_info_t *info=NULL;
-
- /* get the number of objects in the files */
- nobjects = h5trav_getinfo(fid, NULL);
+ printf("%s %s\n",FILE_CONTENTS, BEGIN);
- /* get the list of objects in the files */
- info = (trav_info_t*) malloc( nobjects * sizeof(trav_info_t));
- if (info==NULL)
- return;
+ /* print objects in the files */
+ h5trav_getinfo(fid, NULL, 1);
- h5trav_getinfo(fid, info);
- printf("%s %s\n",FILE_CONTENTS, BEGIN);
- h5trav_printinfo(nobjects,info);
printf(" %s\n",END);
- h5trav_freeinfo(info,nobjects);
}
+
/*-------------------------------------------------------------------------
* Function: set_output_file
*
@@ -3042,11 +3054,6 @@ parse_command_line(int argc, const char *argv[])
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
parse_start:
switch ((char)opt) {
-#if 0
- case 'b':
- /* binary output */
- break;
-#endif /* 0 */
case 'B':
display_bb = TRUE;
last_was_dset = FALSE;
@@ -3064,6 +3071,18 @@ parse_start:
case 'e':
display_escape = TRUE;
break;
+ case 'L':
+ display_links = FALSE;
+ break;
+ case 'G':
+ display_groups = FALSE;
+ break;
+ case 'T':
+ display_dtypes = FALSE;
+ break;
+ case 'E':
+ display_dsets = FALSE;
+ break;
case 'H':
display_data = FALSE;
display_attr_data = FALSE;
diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c
index 9c3d20b..aaba2e5 100644
--- a/tools/h5dump/h5dumpgentest.c
+++ b/tools/h5dump/h5dumpgentest.c
@@ -71,6 +71,9 @@
#define FILE43 "tvldtypes5.h5"
#define FILE44 "tfilters.h5"
#define FILE45 "tnullspace.h5"
+#define FILE46 "tfcontents1.h5"
+#define FILE47 "tfcontents2.h5"
+
/*-------------------------------------------------------------------------
@@ -4168,7 +4171,7 @@ static void gent_compound_complex(void)
}
}
- Array1[m].e = ( m * .96 );
+ Array1[m].e = (float)( m * .96 );
for (n = 0; n < F41_ARRAY_DIMf; n++) {
Array1[m].f[n] = ( m * 1024.9637 );
@@ -4431,9 +4434,6 @@ make_external(hid_t fid)
assert(ret>=0);
}
-
-
-
/*-------------------------------------------------------------------------
* Function: gent_filters
*
@@ -4442,7 +4442,7 @@ make_external(hid_t fid)
*
*-------------------------------------------------------------------------
*/
-static void gent_filters()
+static void gent_filters(void)
{
hid_t fid; /* file id */
hid_t dcpl; /* dataset creation property list */
@@ -4842,11 +4842,20 @@ static void gent_filters()
write_dset(fid,1,dims4,"char",H5T_NATIVE_CHAR,buf4);
/*-------------------------------------------------------------------------
- * a group and a link
+ * links
+ *-------------------------------------------------------------------------
+ */
+ ret=H5Glink (fid, H5G_LINK_SOFT, "all", "slink to all");
+ assert(ret>=0);
+
+ ret=H5Glink (fid, H5G_LINK_HARD, "all", "hlink to all");
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * a group
*-------------------------------------------------------------------------
*/
gid = H5Gcreate(fid,"g1",0);
- H5Glink (gid, H5G_LINK_SOFT, "somevalue", "slink");
write_dset(gid,1,dims4,"mydset",H5T_NATIVE_CHAR,buf4);
ret = H5Gclose(gid);
assert(ret>=0);
@@ -4863,7 +4872,6 @@ static void gent_filters()
* close
*-------------------------------------------------------------------------
*/
-
ret=H5Sclose(sid1);
assert(ret>=0);
@@ -4921,6 +4929,93 @@ set_local_myfilter(hid_t dcpl_id, hid_t UNUSED type_id, hid_t UNUSED space_id)
return(SUCCEED);
}
+
+/*-------------------------------------------------------------------------
+ * Function: gent_fcontents
+ *
+ * Purpose: generate several files to list its contents
+ *
+ *-------------------------------------------------------------------------
+ */
+static void gent_fcontents(void)
+{
+ hid_t fid; /* file id */
+ hid_t gid1; /* group ID */
+ hid_t gid2; /* group ID */
+ hid_t gid3; /* group ID */
+ hid_t tid; /* datatype ID */
+ hsize_t dims[1]={4};
+ int buf[4]={1,2,3,4};
+ int ret;
+
+ /* create a file */
+ fid = H5Fcreate(FILE46, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ assert(fid>=0);
+
+ write_dset(fid,1,dims,"dset",H5T_NATIVE_INT,buf);
+
+/*-------------------------------------------------------------------------
+ * links
+ *-------------------------------------------------------------------------
+ */
+
+ /* soft link to "dset" */
+ ret=H5Glink (fid, H5G_LINK_SOFT, "dset", "slink to dset");
+ assert(ret>=0);
+
+ /* hard link to "dset" */
+ ret=H5Glink (fid, H5G_LINK_HARD, "dset", "hlink to dset");
+ assert(ret>=0);
+
+ /* soft link to itself */
+ ret=H5Glink (fid, H5G_LINK_SOFT, "link", "link");
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * groups
+ *-------------------------------------------------------------------------
+ */
+ gid1 = H5Gcreate(fid,"g1",0);
+ gid2 = H5Gcreate(gid1,"g2",0);
+ gid3 = H5Gcreate(gid2,"g3",0);
+ write_dset(gid3,1,dims,"dset",H5T_NATIVE_INT,buf);
+ ret = H5Gclose(gid1);
+ assert(ret>=0);
+ ret = H5Gclose(gid2);
+ assert(ret>=0);
+ ret = H5Gclose(gid3);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * datatype
+ *-------------------------------------------------------------------------
+ */
+ tid=H5Tcopy(H5T_STD_B8LE);
+ ret=H5Tcommit(fid, "mytype", tid);
+ assert(ret>=0);
+ ret=H5Tclose(tid);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * close
+ *-------------------------------------------------------------------------
+ */
+
+ ret=H5Fclose(fid);
+ assert(ret>=0);
+
+ /* create a file for the bootblock test */
+ fid = H5Fcreate(FILE47, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ assert(fid>=0);
+
+ ret=H5Fclose(fid);
+ assert(ret>=0);
+
+
+}
+
+
+
/*-------------------------------------------------------------------------
* Function: gent_null_space
*
@@ -4972,32 +5067,23 @@ int main(void)
gent_compound_dt();
gent_all();
gent_loop();
-
gent_dataset2();
gent_compound_dt2();
gent_loop2();
gent_many();
-
gent_str();
gent_str2();
-
gent_enum();
-
gent_objref();
gent_datareg();
-
gent_nestcomp();
-
gent_opaque();
-
gent_bitfields();
-
gent_vldatatypes();
gent_vldatatypes2();
gent_vldatatypes3();
gent_vldatatypes4();
gent_vldatatypes5();
-
gent_array1();
gent_array2();
gent_array3();
@@ -5005,26 +5091,20 @@ int main(void)
gent_array5();
gent_array6();
gent_array7();
-
gent_empty();
gent_group_comments();
gent_split_file();
gent_family();
gent_multi();
-
gent_large_objname();
gent_vlstr();
gent_char();
-
gent_attr_all();
-
gent_compound_complex();
-
gent_named_dtype_attr();
-
gent_filters();
-
gent_null_space();
+ gent_fcontents();
return 0;
}
generated by cgit v0.12 at 2024-09-06 12:52:27 (GMT)