diff options
Diffstat (limited to 'tools/h5dump')
| -rw-r--r-- | tools/h5dump/h5dump.c | 865 |
1 files changed, 497 insertions, 368 deletions
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index dcae975..e7d3bdb 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -1,10 +1,7 @@ -/*------------------------------------------------------------------------- - * - * Copyright (C) 1998 - 2001 - * National Center for Supercomputing Applications - * All rights reserved. +/* + * Copyright (C) 1998-2001 National Center for Supercomputing Applications + * All rights reserved. * - *------------------------------------------------------------------------- */ #include <stdio.h> #include <stdlib.h> @@ -14,16 +11,23 @@ #include "h5tools.h" /* module-scoped variables */ -static int display_oid = 0; -static int display_data = 1; -static int d_status = EXIT_SUCCESS; -static int unamedtype = 0; /* shared data type with no name */ -static int prefix_len = 1024; -static table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL; -static char *prefix; +static const char *progname = "h5dump"; + +static int d_status = EXIT_SUCCESS; +static int unamedtype = 0; /* shared data type with no name */ +static int prefix_len = 1024; +static table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL; +static char *prefix; static const dump_header *dump_header_format; +/* things to display or which are set via command line parameters */ +static int display_all = TRUE; +static int display_bb = FALSE; +static int display_oid = FALSE; +static int display_data = TRUE; +static int usingdasho = FALSE; + /** ** Added for XML ** **/ @@ -355,7 +359,7 @@ static void dump_datatype(hid_t type); static herr_t dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data); -/* XML format: same interface, alternaive output */ +/* XML format: same interface, alternative output */ static void xml_dump_group(hid_t, const char *); static void xml_dump_dataset(hid_t ds, const char *dsname); @@ -420,7 +424,7 @@ struct subset_t { /* a structure for handling the order command-line parameters come in */ struct handler_t { - void (*func)(hid_t, char *); + void (*func)(hid_t, char *, void *); char *obj; struct subset_t *subset_info; }; @@ -430,10 +434,23 @@ struct handler_t { * parameters. The long-named ones can be partially spelled. When * adding more, make sure that they don't clash with each other. */ +#if 0 + /* binary: not implemented yet */ +static const char *s_opts = "hbBHvVa:d:g:l:t:w:xD:o:s:T:c:k:"; +#else static const char *s_opts = "hBHvVa:d:g:l:t:w:xD:o:s:T:c:k:"; +#endif /* 0 */ static struct long_options l_opts[] = { { "help", no_arg, 'h' }, { "hel", no_arg, 'h' }, +#if 0 + /* binary: not implemented yet */ + { "binary", no_arg, 'b' }, + { "binar", no_arg, 'b' }, + { "bina", no_arg, 'b' }, + { "bin", no_arg, 'b' }, + { "bi", no_arg, 'b' }, +#endif /* 0 */ { "boot-block", no_arg, 'B' }, { "boot-bloc", no_arg, 'B' }, { "boot-blo", no_arg, 'B' }, @@ -532,10 +549,10 @@ static struct long_options l_opts[] = { *------------------------------------------------------------------------- */ static void -usage(const char *progname) +usage(const char *prog) { fflush(stdout); - fprintf(stderr, "\ + fprintf(stdout, "\ usage: %s [OPTIONS] file\n\ OPTIONS\n\ -h, --help Print a usage message and exit\n\ @@ -549,14 +566,14 @@ usage: %s [OPTIONS] file\n\ -l P, --soft-link=P Print the value(s) of the specified soft link\n\ -o F, --output=F Output raw data into file F\n\ -t T, --datatype=T Print the specified named data type\n\ - -w #, --width=# Set the number of columns of output\n\ + -w N, --width=N Set the number of columns of output\n\ -x, --xml Output in XML\n\ -D U, --xml-dtd=U Use the DTD at U\n\ \n\ P - is the full path from the root group to the object.\n\ T - is the name of the data type.\n\ F - is a filename.\n\ - # - is an integer greater than 1.\n\ + N - is an integer greater than 1.\n\ U - is a URI reference (as defined in [IETF RFC 2396],\n\ updated by [IETF RFC 2732])\n\ \n\ @@ -565,7 +582,7 @@ usage: %s [OPTIONS] file\n\ Attribute foo of the group /bar_none in file quux.h5\n\ \n\ h5dump -a /bar_none/foo quux.h5\n\ -\n", progname); +\n", prog); } /*------------------------------------------------------------------------- @@ -584,15 +601,15 @@ usage: %s [OPTIONS] file\n\ static void print_datatype(hid_t type) { - char *fname; - hid_t nmembers, mtype, str_type; - int i, j, ndims, perm[H5DUMP_MAX_RANK]; - size_t size; - hsize_t dims[H5DUMP_MAX_RANK]; - H5T_str_t str_pad; - H5T_cset_t cset; - H5G_stat_t statbuf; - hid_t super; + char *fname; + hid_t nmembers, mtype, str_type; + int i, j, ndims, perm[H5DUMP_MAX_RANK]; + size_t size; + hsize_t dims[H5DUMP_MAX_RANK]; + H5T_str_t str_pad; + H5T_cset_t cset; + H5G_stat_t statbuf; + hid_t super; switch (H5Tget_class(type)) { case H5T_INTEGER: @@ -786,8 +803,7 @@ print_datatype(hid_t type) else printf("\"%s\"", type_table->objs[i].objname); } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unknown committed type.\n"); + error_msg(progname, "unknown committed type.\n"); d_status = EXIT_FAILURE; } } else { @@ -837,7 +853,6 @@ print_datatype(hid_t type) case H5T_VLEN: printf("H5T_VLEN %s ", dump_header_format->vlenblockbegin); - super = H5Tget_super(type); print_datatype(super); H5Tclose(super); @@ -922,7 +937,7 @@ dump_datatype(hid_t type) indentation(indent); printf("%s %s ", dump_header_format->datatypebegin, - dump_header_format->datatypeblockbegin); + dump_header_format->datatypeblockbegin); print_datatype(type); @@ -930,7 +945,7 @@ dump_datatype(hid_t type) indentation(indent); printf(" %s %s\n", dump_header_format->datatypeblockend, - dump_header_format->datatypeend); + dump_header_format->datatypeend); indent -= COL; } @@ -951,11 +966,10 @@ dump_datatype(hid_t type) static void dump_dataspace(hid_t space) { - hsize_t size[H5DUMP_MAX_RANK]; - hsize_t maxsize[H5DUMP_MAX_RANK]; - int ndims = - H5Sget_simple_extent_dims(space, size, maxsize); - int i; + hsize_t size[H5DUMP_MAX_RANK]; + hsize_t maxsize[H5DUMP_MAX_RANK]; + int ndims = H5Sget_simple_extent_dims(space, size, maxsize); + int i; indentation(indent + COL); printf("%s ", dump_header_format->dataspacebegin); @@ -982,7 +996,7 @@ dump_dataspace(hid_t space) "H5S_UNLIMITED"); else HDfprintf(stdout, "%s %Hu", - dump_header_format->dataspacedimbegin, maxsize[0]); + dump_header_format->dataspacedimbegin, maxsize[0]); for (i = 1; i < ndims; i++) if (maxsize[i] == H5S_UNLIMITED) @@ -1018,14 +1032,22 @@ dump_dataspace(hid_t space) static herr_t dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) { - hid_t attr_id, type, space; - herr_t ret = SUCCEED; + hid_t attr_id, type, space; + herr_t ret = SUCCEED; indentation(indent); begin_obj(dump_header_format->attributebegin, attr_name, dump_header_format->attributeblockbegin); - if ((attr_id = H5Aopen_name(attr, attr_name)) >= 0) { + if ((attr_id = H5Aopen_name(attr, attr_name)) < 0) { + indentation(indent + COL); + error_msg(progname, "unable to open attribute \"%s\"\n", attr_name); + indentation(indent); + end_obj(dump_header_format->attributeend, + dump_header_format->attributeblockend); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { type = H5Aget_type(attr_id); space = H5Aget_space(attr_id); dump_datatype(type); @@ -1043,15 +1065,6 @@ dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) indentation(indent); end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); - } else { - indentation(indent + COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open attribute \"%s\"\n", attr_name); - indentation(indent); - end_obj(dump_header_format->attributeend, - dump_header_format->attributeblockend); - d_status = EXIT_FAILURE; - ret = FAIL; } return ret; @@ -1093,7 +1106,7 @@ dump_selected_attr(hid_t loc_id, const char *name) strcpy(obj_name, "/"); } else { strncpy(obj_name, name, (size_t)j + 1); - obj_name[j+1] = '\0'; + obj_name[j + 1] = '\0'; } attr_name = name + j + 1; @@ -1105,8 +1118,7 @@ dump_selected_attr(hid_t loc_id, const char *name) case H5G_GROUP: if ((oid = H5Gopen(loc_id, obj_name)) < 0) { indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open group \"%s\"\n", obj_name); + error_msg(progname, "unable to open group \"%s\"\n", obj_name); end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); d_status = EXIT_FAILURE; @@ -1117,8 +1129,7 @@ dump_selected_attr(hid_t loc_id, const char *name) case H5G_DATASET: if ((oid = H5Dopen(loc_id, obj_name)) < 0) { indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open dataset \"%s\"\n", obj_name); + error_msg(progname, "unable to open dataset \"%s\"\n", obj_name); end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); d_status = EXIT_FAILURE; @@ -1129,8 +1140,7 @@ dump_selected_attr(hid_t loc_id, const char *name) case H5G_TYPE: if ((oid = H5Topen(loc_id, obj_name)) < 0) { indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open datatype \"%s\"\n", obj_name); + error_msg(progname, "unable to open datatype \"%s\"\n", obj_name); end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); d_status = EXIT_FAILURE; @@ -1140,8 +1150,7 @@ dump_selected_attr(hid_t loc_id, const char *name) default: indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open unknown \"%s\"\n", obj_name); + error_msg(progname, "unable to open unknown \"%s\"\n", obj_name); end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); d_status = EXIT_FAILURE; @@ -1167,8 +1176,7 @@ dump_selected_attr(hid_t loc_id, const char *name) dump_header_format->attributeblockend); } else { indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open attribute \"%s\"\n", obj_name); + error_msg(progname, "unable to open attribute \"%s\"\n", obj_name); end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend); d_status = EXIT_FAILURE; @@ -1216,7 +1224,8 @@ dump_selected_attr(hid_t loc_id, const char *name) * Programmer: Ruey-Hsia Li * * Modifications: - * 11/00 Added XML support. Also, optionally checks the op_data + * RMcG, November 2000 + * Added XML support. Also, optionally checks the op_data * argument. * *------------------------------------------------------------------------- @@ -1224,16 +1233,18 @@ dump_selected_attr(hid_t loc_id, const char *name) static herr_t dump_all(hid_t group, const char *name, void * op_data) { - hid_t obj; - char *buf, *tmp, *tmp2; - H5G_stat_t statbuf; - int i; + hid_t obj; + char *buf, *tmp = NULL; + H5G_stat_t statbuf; + int i; + herr_t ret = SUCCEED; H5Gget_objinfo(group, name, FALSE, &statbuf); - if ((*(int *)op_data != H5G_UNKNOWN) && - (statbuf.type != *(int *) op_data)) - return SUCCEED; - tmp = (char *) malloc(strlen(prefix) + strlen(name) + 2); + + if (*(int *)op_data != H5G_UNKNOWN && statbuf.type != *(int *) op_data) + goto done; + + tmp = malloc(strlen(prefix) + strlen(name) + 1); strcpy(tmp, prefix); switch (statbuf.type) { @@ -1247,34 +1258,45 @@ dump_all(hid_t group, const char *name, void * op_data) indentation(indent + COL); } - if (H5Gget_linkval(group, name, statbuf.linklen, buf) >= 0) { + if (H5Gget_linkval(group, name, statbuf.linklen, buf) < 0) { + error_msg(progname, "unable to get link value\n"); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { /* print the value of a soft link */ if (!doxml) { - /* Standard DDL: no modification */ + /* Standard DDL: no modification */ printf("LINKTARGET \"%s\"\n", buf); } else { /* XML */ - tmp2 = (char *) malloc(strlen(prefix) + statbuf.linklen + 2); + char *t_name = xml_escape_the_name(name); + char *t_buf = xml_escape_the_name(buf); + char *t_prefix = xml_escape_the_name(prefix); + char *tmp2, *t_tmp2, *t_tmp; + + tmp2 = malloc(strlen(prefix) + statbuf.linklen + 1); strcpy(tmp2, prefix); - if (buf && buf[0] == '/') { - strcat(tmp2, buf); - } else { - strcat(strcat(tmp2, "/"), buf); - } - strcat(strcat(tmp, "/"), name); - printf - ("<SoftLink LinkName=\"%s\" Target=\"%s\" TargetObj=\"%s\" OBJ-XID=\"%s\" Source=\"%s\"/>\n", - xml_escape_the_name(name), - xml_escape_the_name(buf), - xml_escape_the_name(tmp2), - xml_escape_the_name(tmp), - (strcmp(prefix, "") ? xml_escape_the_name(prefix) : "root")); - free(tmp2); + + if (buf && buf[0] == '/') + strcat(tmp2, buf); + else + strcat(strcat(tmp2, "/"), buf); + + t_tmp = xml_escape_the_name(strcat(strcat(tmp, "/"), name)); + t_tmp2 = xml_escape_the_name(tmp2); + + printf("<SoftLink LinkName=\"%s\" Target=\"%s\" " + "TargetObj=\"%s\" OBJ-XID=\"%s\" Source=\"%s\"/>\n", + t_name, t_buf, t_tmp2, t_tmp, + (strcmp(prefix, "") ? t_prefix : "root")); + + free(t_name); + free(t_buf); + free(t_prefix); + free(t_tmp); + free(t_tmp2); + free(tmp2); } - } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to get link value\n"); - d_status = EXIT_FAILURE; } if (!doxml) { @@ -1287,15 +1309,15 @@ dump_all(hid_t group, const char *name, void * op_data) break; case H5G_GROUP: - if ((obj = H5Gopen(group, name)) >= 0) { + if ((obj = H5Gopen(group, name)) < 0) { + error_msg(progname, "unable to dump group \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { strcat(strcat(prefix, "/"), name); dump_function_table->dump_group_function(obj, name); strcpy(prefix, tmp); H5Gclose(obj); - } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to dump group \"%s\"\n", name); - d_status = EXIT_FAILURE; } break; @@ -1313,12 +1335,14 @@ dump_all(hid_t group, const char *name, void * op_data) begin_obj(dump_header_format->datasetbegin, name, dump_header_format->datasetblockbegin); indentation(indent + COL); - fflush(stdout); - fprintf(stderr, "h5dump error: internal error (line %d)\n", __LINE__); + error_msg(progname, + "internal error (file %s:line %d)\n", + __FILE__, __LINE__); indentation(indent); end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend); d_status = EXIT_FAILURE; + ret = FAIL; H5Dclose(obj); goto done; } else if (dset_table->objs[i].displayed) { @@ -1334,20 +1358,26 @@ dump_all(hid_t group, const char *name, void * op_data) dump_header_format->datasetblockend); } else { /* the XML version */ - strcat(strcat(tmp, "/"), name); - printf - ("<Dataset Name=\"%s\" OBJ-XID=\"%s\" Parents=\"%s\">\n", - xml_escape_the_name(name), - xml_escape_the_name(tmp), - (strcmp(prefix, "") ? xml_escape_the_name(prefix) - : "root")); + char *t_name = xml_escape_the_name(name); + char *t_tmp = xml_escape_the_name(strcat(strcat(tmp, "/"), name)); + char *t_prefix = xml_escape_the_name(prefix); + char *t_objname = xml_escape_the_name(dset_table->objs[i].objname); + + printf("<Dataset Name=\"%s\" OBJ-XID=\"%s\" Parents=\"%s\">\n", + t_name, t_tmp, + (strcmp(prefix, "") ? t_prefix : "root")); indentation(indent + COL); - printf("<DatasetPtr OBJ-XID=\"%s\"/>\n", - xml_escape_the_name(dset_table->objs[i].objname)); + printf("<DatasetPtr OBJ-XID=\"%s\"/>\n", t_objname); indentation(indent); printf("%s\n", dump_header_format->datasetend); + + free(t_name); + free(t_tmp); + free(t_prefix); + free(t_objname); } + H5Dclose(obj); goto done; } else { @@ -1361,34 +1391,34 @@ dump_all(hid_t group, const char *name, void * op_data) dump_function_table->dump_dataset_function(obj, name); H5Dclose(obj); } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to dump dataset \"%s\"\n", name); + error_msg(progname, "unable to dump dataset \"%s\"\n", name); d_status = EXIT_FAILURE; + ret = FAIL; } + break; case H5G_TYPE: - if ((obj = H5Topen(group, name)) >= 0) { + if ((obj = H5Topen(group, name)) < 0) { + error_msg(progname, "unable to dump data type \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { dump_function_table->dump_named_datatype_function(obj, name); H5Tclose(obj); - } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to dump data type \"%s\"\n", name); - d_status = EXIT_FAILURE; } break; default: - fflush(stdout); - fprintf(stderr, "h5dump error: unknown object \"%s\"\n", name); + error_msg(progname, "unknown object \"%s\"\n", name); d_status = EXIT_FAILURE; - return FAIL; + ret = FAIL; } - done: +done: free(tmp); - return SUCCEED; + return ret; } /*------------------------------------------------------------------------- @@ -1412,7 +1442,7 @@ dump_named_datatype(hid_t type, const char *name) dump_header_format->datatypeblockbegin); if (H5Tget_class(type) == H5T_COMPOUND) { - hid_t temp_type = H5Tcopy(type); + hid_t temp_type = H5Tcopy(type); print_datatype(temp_type); H5Tclose(temp_type); @@ -1445,11 +1475,10 @@ dump_named_datatype(hid_t type, const char *name) static void dump_group(hid_t gid, const char *name) { - H5G_stat_t statbuf; - hid_t dset, type; - char typename[1024], *tmp; - int i; - int xtype = H5G_UNKNOWN; /* dump all */ + H5G_stat_t statbuf; + hid_t dset, type; + char typename[1024], *tmp; + int i, xtype = H5G_UNKNOWN; /* dump all */ tmp = malloc(strlen(prefix) + strlen(name) + 2); strcpy(tmp, prefix); @@ -1482,8 +1511,8 @@ dump_group(hid_t gid, const char *name) if (i < 0) { indentation(indent); - fflush(stdout); - fprintf(stderr, "h5dump error: internal error (line %d)\n", __LINE__); + error_msg(progname, "internal error (file %s:line %d)\n", + __FILE__, __LINE__); d_status = EXIT_FAILURE; } else if (group_table->objs[i].displayed) { indentation(indent); @@ -1521,7 +1550,7 @@ dump_group(hid_t gid, const char *name) static void dump_dataset(hid_t did, const char *name) { - hid_t type, space; + hid_t type, space; indentation(indent); begin_obj(dump_header_format->datasetbegin, name, @@ -1568,7 +1597,6 @@ dump_dataset(hid_t did, const char *name) dump_header_format->datasetblockend); } -#if H5DUMP_DEBUG /*------------------------------------------------------------------------- * Function: dump_tables * @@ -1585,7 +1613,8 @@ dump_dataset(hid_t did, const char *name) static void dump_tables(void) { - int i; +#ifdef H5DUMP_DEBUG + register int i; printf("group_table: # of entries = %d\n", group_table->nobjs); @@ -1610,8 +1639,10 @@ dump_tables(void) type_table->objs[i].objno[1], type_table->objs[i].objname, type_table->objs[i].displayed, type_table->objs[i].recorded); +#else + return; +#endif /* H5DUMP_DEBUG */ } -#endif /* H5DUMP_DEBUG */ /*------------------------------------------------------------------------- * Function: dump_data @@ -1681,8 +1712,7 @@ dump_data(hid_t obj_id, int obj_data) if (status < 0) { indentation(indent + COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to print data\n"); + error_msg(progname, "unable to print data\n"); d_status = EXIT_FAILURE; } @@ -1730,7 +1760,7 @@ static int set_output_file(const char *fname) { FILE *f; /* temporary holding place for the stream pointer - so that rawdatastream is changed only when succeeded */ + * so that rawdatastream is changed only when succeeded */ if ((f = fopen(fname, "w")) != NULL) { rawdatastream = f; @@ -1755,7 +1785,7 @@ set_output_file(const char *fname) *------------------------------------------------------------------------- */ static void -handle_attributes(hid_t fid, char *attr) +handle_attributes(hid_t fid, char *attr, void UNUSED *data) { dump_selected_attr(fid, attr); } @@ -1785,9 +1815,9 @@ handle_attributes(hid_t fid, char *attr) static hsize_t * parse_hsize_list(const char *h_list) { - hsize_t *p_list; - const char *ptr; - unsigned int size_count = 0, i = 0, last_digit = 0; + hsize_t *p_list; + const char *ptr; + unsigned int size_count = 0, i = 0, last_digit = 0; if (!h_list || !*h_list || *h_list == ';') return NULL; @@ -1844,7 +1874,7 @@ static struct subset_t * parse_subset_params(char *dset) { struct subset_t *s = NULL; - register char *brace; + register char *brace; if ((brace = strrchr(dset, '[')) != NULL) { char *slash = strrchr(dset, '/'); @@ -1904,17 +1934,17 @@ parse_subset_params(char *dset) *------------------------------------------------------------------------- */ static void -handle_datasets(hid_t fid, char *dset) +handle_datasets(hid_t fid, char *dset, void *data) { - H5G_stat_t statbuf; - hid_t dsetid; + H5G_stat_t statbuf; + hid_t dsetid; + struct subset_t *sset = (struct subset_t *)data; if ((dsetid = H5Dopen(fid, dset)) < 0) { begin_obj(dump_header_format->datasetbegin, dset, dump_header_format->datasetblockbegin); indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open dataset \"%s\"\n", dset); + error_msg(progname, "unable to open dataset \"%s\"\n", dset); end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend); d_status = EXIT_FAILURE; @@ -1966,17 +1996,16 @@ handle_datasets(hid_t fid, char *dset) *------------------------------------------------------------------------- */ static void -handle_groups(hid_t fid, char *group) +handle_groups(hid_t fid, char *group, void UNUSED *data) { - H5G_stat_t statbuf; - hid_t gid; + H5G_stat_t statbuf; + hid_t gid; if ((gid = H5Gopen(fid, group)) < 0) { begin_obj(dump_header_format->groupbegin, group, dump_header_format->groupblockbegin); indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open group \"%s\"\n", group); + error_msg(progname, "unable to open group \"%s\"\n", group); end_obj(dump_header_format->groupend, dump_header_format->groupblockend); d_status = EXIT_FAILURE; @@ -2005,16 +2034,15 @@ handle_groups(hid_t fid, char *group) *------------------------------------------------------------------------- */ static void -handle_links(hid_t fid, char *links) +handle_links(hid_t fid, char *links, void UNUSED *data) { - H5G_stat_t statbuf; + H5G_stat_t statbuf; if (H5Gget_objinfo(fid, links, FALSE, &statbuf) < 0) { begin_obj(dump_header_format->softlinkbegin, links, dump_header_format->softlinkblockbegin); indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to get obj info from \"%s\"\n", links); + error_msg(progname, "unable to get obj info from \"%s\"\n", links); end_obj(dump_header_format->softlinkend, dump_header_format->softlinkblockend); d_status = EXIT_FAILURE; @@ -2028,9 +2056,8 @@ handle_links(hid_t fid, char *links) if (H5Gget_linkval(fid, links, statbuf.linklen, buf) >= 0) { printf("LINKTARGET \"%s\"\n", buf); } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to get link value for \"%s\"\n", - links); + error_msg(progname, "h5dump error: unable to get link value for \"%s\"\n", + links); d_status = EXIT_FAILURE; } @@ -2041,8 +2068,7 @@ handle_links(hid_t fid, char *links) begin_obj(dump_header_format->softlinkbegin, links, dump_header_format->softlinkblockbegin); indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: \"%s\" is not a link\n", links); + error_msg(progname, "\"%s\" is not a link\n", links); end_obj(dump_header_format->softlinkend, dump_header_format->softlinkblockend); d_status = EXIT_FAILURE; @@ -2064,9 +2090,9 @@ handle_links(hid_t fid, char *links) *------------------------------------------------------------------------- */ static void -handle_datatypes(hid_t fid, char *type) +handle_datatypes(hid_t fid, char *type, void UNUSED *data) { - hid_t typeid; + hid_t typeid; if ((typeid = H5Topen(fid, type)) < 0) { /* check if type is unamed data type */ @@ -2097,8 +2123,7 @@ handle_datatypes(hid_t fid, char *type) begin_obj(dump_header_format->datatypebegin, type, dump_header_format->datatypeblockbegin); indentation(COL); - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open datatype \"%s\"\n", type); + error_msg(progname, "unable to open datatype \"%s\"\n", type); end_obj(dump_header_format->datatypeend, dump_header_format->datatypeblockend); d_status = EXIT_FAILURE; @@ -2117,59 +2142,36 @@ handle_datatypes(hid_t fid, char *type) } } + /*------------------------------------------------------------------------- - * Function: main - * - * Purpose: HDF5 dumper + * Function: parse_command_line * - * Return: Success: 0 - * Failure: 1 + * Purpose: Parse the command line for the h5dumper. * - * Programmer: Ruey-Hsia Li + * Return: Success: A pointer to an array of handler_t structures. + * These contain all the information needed to dump + * the necessary object. * - * Modifications: - * Albert Cheng, 30. September 2000 - * Add the -o option--output file for datasets raw data + * Failure: Exits program with EXIT_FAILURE value. * - * REMcG, November 2000 - * Changes to support XML. + * Programmer: Bill Wendling + * Tuesday, 20. February 2001 * - * Bill Wendling - * Wednesday, 10. January 2001 - * Modified the way command line parameters are interpreted. They go - * through one function call now (get_option). + * Modifications: * *------------------------------------------------------------------------- */ -int -main(int argc, const char *argv[]) +static struct handler_t * +parse_command_line(int argc, const char *argv[]) { - hid_t fid, gid; - const char *progname = "h5dump"; - const char *fname = NULL; - int i, display_bb = 0, display_all = 1, newwidth = 0; - void *edata; - hid_t (*func)(void*); - find_objs_t info; - int opt; struct handler_t *hand, *last_dset; - int usingdasho = FALSE, last_was_dset = FALSE; + int i, opt, last_was_dset = FALSE; if (argc < 2) { usage(progname); exit(EXIT_FAILURE); } - dump_header_format = &standardformat; - dump_function_table = &ddl_function_table; - - /* Disable error reporting */ - H5Eget_auto(&func, &edata); - H5Eset_auto(NULL, NULL); - - /* Initialize h5tools lib */ - h5tools_init(); - /* this will be plenty big enough to hold the info */ hand = calloc((size_t)argc, sizeof(struct handler_t)); @@ -2291,14 +2293,17 @@ parse_start: struct subset_t *s; if (!last_was_dset) { - fprintf(stderr, "%s error: option `-%c' can only be used after --dataset option\n", - progname, opt); + error_msg(progname, + "option `-%c' can only be used after --dataset option\n", + opt); exit(EXIT_FAILURE); } if (last_dset->subset_info) { - /* this overrides the "terse" syntax if they actually mixed - * the two */ + /* + * This overrides the "terse" syntax if they actually mixed + * the two. + */ s = last_dset->subset_info; } else { last_dset->subset_info = s = calloc(1, sizeof(struct subset_t)); @@ -2309,11 +2314,11 @@ parse_start: * for subsetting: "--start", "--stride", "--count", and "--block" * which can come in any order. If we run out of parameters (EOF) * or run into one which isn't a subsetting parameter (NOT s, T, - * c, or K), then we exit the do-while look, set hte subset_info + * c, or K), then we exit the do-while look, set the subset_info * to the structure we've been filling. If we've reached the end * of the options, we exit the parsing (goto parse_end) otherwise, * since we've "read" the next option, we need to parse it. So we - * just to the beginning of the switch statement (goto parse_start). + * jump to the beginning of the switch statement (goto parse_start). */ do { switch ((char)opt) { @@ -2346,44 +2351,135 @@ end_collect: } parse_end: - /* check for conflicting options */ + return hand; +} + + +/*------------------------------------------------------------------------- + * Function: free_handler + * + * Purpose: Convenience function to free the handler_t structures. Needs a + * length variable (LEN) to know how many in the array it needs + * to free + * + * Return: Nothing + * + * Programmer: Bill Wendling + * Tuesday, 20. February 2001 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static void +free_handler(struct handler_t *hand, int len) +{ + register int i; + + for (i = 0; i < len; i++) { + free(hand[i].obj); + + if (hand[i].subset_info) { + free(hand[i].subset_info->start); + free(hand[i].subset_info->stride); + free(hand[i].subset_info->count); + free(hand[i].subset_info->block); + free(hand[i].subset_info); + } + } + + free(hand); +} + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: HDF5 dumper + * + * Return: Success: 0 + * Failure: 1 + * + * Programmer: Ruey-Hsia Li + * + * Modifications: + * Albert Cheng + * 30. September 2000 + * Add the -o option--output file for datasets raw data + * + * REMcG + * November 2000 + * Changes to support XML. + * + * Bill Wendling + * Wednesday, 10. January 2001 + * Modified the way command line parameters are interpreted. They go + * through one function call now (get_option). + * + * Bill Wendling + * Tuesday, 20. February 2001 + * Moved command line parsing to separate function. Made various + * "display_*" flags global. + * + *------------------------------------------------------------------------- + */ +int +main(int argc, const char *argv[]) +{ + hid_t fid, gid; + const char *fname = NULL; + void *edata; + hid_t (*func)(void*); + find_objs_t info; + struct handler_t *hand; + int i; + + if (argc < 2) { + usage(progname); + exit(EXIT_FAILURE); + } + + dump_header_format = &standardformat; + dump_function_table = &ddl_function_table; + + /* Disable error reporting */ + H5Eget_auto(&func, &edata); + H5Eset_auto(NULL, NULL); + + /* Initialize h5tools lib */ + h5tools_init(); + hand = parse_command_line(argc, argv); + + /* Check for conflicting options */ if (doxml) { if (!display_all) { - fflush(stdout); - fprintf(stderr, "h5dump error: option \"%s\" not available for XML\n", - "to display selected objects"); + error_msg(progname, "option \"%s\" not available for XML\n", + "to display selected objects"); exit(EXIT_FAILURE); } else if (display_bb) { - fflush(stdout); - fprintf(stderr, "h5dump error: option \"%s\" not available for XML\n", - "--boot-block"); + error_msg(progname, "option \"%s\" not available for XML\n", + "--boot-block"); exit(EXIT_FAILURE); } else if (!display_data) { - fflush(stdout); - fprintf(stderr, "h5dump error: option \"%s\" not available for XML\n", - "--header"); + error_msg(progname, "option \"%s\" not available for XML\n", + "--header"); exit(EXIT_FAILURE); } else if (display_oid == 1) { - fflush(stdout); - fprintf(stderr, "h5dump error: option \"%s\" not available for XML\n", - "--object-ids"); + error_msg(progname, "option \"%s\" not available for XML\n", + "--object-ids"); exit(EXIT_FAILURE); } else if (usingdasho) { - fflush(stdout); - fprintf(stderr, "h5dump error: option \"%s\" not available for XML\n", - "--output"); + error_msg(progname, "option \"%s\" not available for XML\n", + "--output"); exit(EXIT_FAILURE); } } else { - if (xml_dtd_uri != NULL) { - fflush(stdout); - fprintf(stderr, - "h5dump warning: option \"%s\" only applies with XML: %s\n", - "--xml-dtd", xml_dtd_uri); + if (xml_dtd_uri) { + warn_msg(progname, "option \"%s\" only applies with XML: %s\n", + "--xml-dtd", xml_dtd_uri); } } - if (argv[argc - 1][0] == '\\') + if (argv[opt_ind][0] == '\\') fname = &argv[opt_ind][1]; else fname = argv[opt_ind]; @@ -2391,8 +2487,7 @@ parse_end: fid = h5dump_fopen(fname, NULL, 0); if (fid < 0) { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open file \"%s\"\n", fname); + error_msg(progname, "unable to open file \"%s\"\n", fname); exit(EXIT_FAILURE); } @@ -2417,8 +2512,7 @@ parse_end: /* find all objects that might be targets of a refernce */ if ((gid = H5Gopen(fid, "/")) < 0) { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open root group\n"); + error_msg(progname, "unable to open root group\n"); d_status = EXIT_FAILURE; goto done; } @@ -2443,13 +2537,11 @@ parse_end: if (type_table->objs[i].recorded == 0) unamedtype = 1; -#ifdef H5DUMP_DEBUG dump_tables(); -#endif /* H5DUMP_DEBUG */ if (info.status) { - fflush(stdout); - fprintf(stderr, "h5dump error: internal error (line %d)\n", __LINE__); + error_msg(progname, "internal error (file %s:line %d)\n", + __FILE__, __LINE__); d_status = EXIT_FAILURE; goto done; } @@ -2468,35 +2560,30 @@ parse_end: if (display_bb) dump_bb(); - if (newwidth) - sscanf(argv[newwidth + 1], "%d", &nCols); - if (display_all) { - if ((gid = H5Gopen (fid, "/")) < 0 ) { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to open root group\n"); + if ((gid = H5Gopen(fid, "/")) < 0) { + error_msg(progname, "unable to open root group\n"); d_status = EXIT_FAILURE; } else { dump_function_table->dump_group_function(gid, "/"); } - if (H5Gclose (gid) < 0) { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to close root group\n"); + if (H5Gclose(gid) < 0) { + error_msg(progname, "unable to close root group\n"); d_status = EXIT_FAILURE; } } else { if (doxml) { - /* Note: this option is not supported for XML */ - fflush(stdout); - fprintf(stderr, "h5dump error: internal error (line %d)\n", __LINE__); + /* Note: this option is not supported for XML */ + error_msg(progname, "internal error (file %s:line %d)\n", + __FILE__, __LINE__); d_status = EXIT_FAILURE; goto done; } for (i = 0; i < argc; i++) if (hand[i].func) - hand[i].func(fid, hand[i].obj); + hand[i].func(fid, hand[i].obj, hand[i].subset_info); } if (!doxml) { @@ -2510,19 +2597,7 @@ done: if (H5Fclose(fid) < 0) d_status = EXIT_FAILURE; - for (i = 0; i < argc; i++) { - free(hand[i].obj); - - if (hand[i].subset_info) { - free(hand[i].subset_info->start); - free(hand[i].subset_info->stride); - free(hand[i].subset_info->count); - free(hand[i].subset_info->block); - free(hand[i].subset_info); - } - } - - free(hand); + free_handler(hand, argc); free(group_table->objs); free(dset_table->objs); @@ -2845,13 +2920,17 @@ fill_ref_path_table(hid_t group, const char *name, void UNUSED * op_data) H5Gget_objinfo(group, name, FALSE, &statbuf); tmp = (char *) malloc(strlen(prefix) + strlen(name) + 2); + if (tmp == NULL) return FAIL; + thepath = (char *) malloc(strlen(prefix) + strlen(name) + 2); + if (thepath == NULL) { free(tmp); return FAIL; } + strcpy(tmp, prefix); strcpy(thepath, prefix); @@ -2867,8 +2946,7 @@ fill_ref_path_table(hid_t group, const char *name, void UNUSED * op_data) } H5Dclose(obj); } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to get dataset \"%s\"\n", name); + error_msg(progname, "unable to get dataset \"%s\"\n", name); d_status = EXIT_FAILURE; } break; @@ -2883,8 +2961,7 @@ fill_ref_path_table(hid_t group, const char *name, void UNUSED * op_data) } H5Gclose(obj); } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to dump group \"%s\"\n", name); + error_msg(progname, "unable to dump group \"%s\"\n", name); d_status = EXIT_FAILURE; } break; @@ -2896,13 +2973,13 @@ fill_ref_path_table(hid_t group, const char *name, void UNUSED * op_data) } H5Tclose(obj); } else { - fflush(stdout); - fprintf(stderr, "h5dump error: unable to get dataset \"%s\"\n", name); + error_msg(progname, "unable to get dataset \"%s\"\n", name); d_status = EXIT_FAILURE; } break; default:; } + free(tmp); free(thepath); return 0; @@ -2938,7 +3015,7 @@ xml_escape_the_name(const char *str) char *ncp; char *rcp; - if (str == NULL) + if (!str) return NULL; cp = str; @@ -2957,44 +3034,47 @@ xml_escape_the_name(const char *str) } else if (*cp == '&') { extra += (strlen(amp) - 1); } + cp++; } - if (extra == 0) { - return (char *) str; - } else { - cp = str; - rcp = ncp = calloc((size_t)(len + extra + 1), sizeof(char)); - if (ncp == NULL) - return NULL; /* ?? */ - for (i = 0; i < len; i++) { - if (*cp == '\'') { - strncpy(ncp, apos, strlen(apos)); - ncp += strlen(apos); - cp++; - } else if (*cp == '<') { - strncpy(ncp, lt, strlen(lt)); - ncp += strlen(lt); - cp++; - } else if (*cp == '>') { - strncpy(ncp, gt, strlen(gt)); - ncp += strlen(gt); - cp++; - } else if (*cp == '\"') { - strncpy(ncp, quote, strlen(quote)); - ncp += strlen(quote); - cp++; - } else if (*cp == '&') { - strncpy(ncp, amp, strlen(amp)); - ncp += strlen(amp); - cp++; - } else { - *ncp++ = *cp++; - } - } - *ncp = '\0'; - return rcp; + if (extra == 0) + return strdup(str); + + cp = str; + rcp = ncp = calloc((size_t)(len + extra + 1), sizeof(char)); + + if (!ncp) + return NULL; /* ?? */ + + for (i = 0; i < len; i++) { + if (*cp == '\'') { + strncpy(ncp, apos, strlen(apos)); + ncp += strlen(apos); + cp++; + } else if (*cp == '<') { + strncpy(ncp, lt, strlen(lt)); + ncp += strlen(lt); + cp++; + } else if (*cp == '>') { + strncpy(ncp, gt, strlen(gt)); + ncp += strlen(gt); + cp++; + } else if (*cp == '\"') { + strncpy(ncp, quote, strlen(quote)); + ncp += strlen(quote); + cp++; + } else if (*cp == '&') { + strncpy(ncp, amp, strlen(amp)); + ncp += strlen(amp); + cp++; + } else { + *ncp++ = *cp++; + } } + + *ncp = '\0'; + return rcp; } /*------------------------------------------------------------------------- @@ -3021,16 +3101,18 @@ xml_escape_the_string(const char *str, int slen) char *ncp; char *rcp; - if (str == NULL) + if (!str) return NULL; cp = str; - if (slen < 0) { + + if (slen < 0) len = strlen(str); - } else { + else len = slen; - } + extra = 0; + for (i = 0; i < len; i++) { if (*cp == '\\') { extra++; @@ -3050,8 +3132,10 @@ xml_escape_the_string(const char *str, int slen) cp = str; rcp = ncp = calloc((size_t)(len + extra + 1), sizeof(char)); + if (ncp == NULL) return NULL; /* ?? */ + for (i = 0; i < len; i++) { if (*cp == '\\') { *ncp++ = '\\'; @@ -3079,6 +3163,7 @@ xml_escape_the_string(const char *str, int slen) *ncp++ = *cp++; } } + *ncp = '\0'; return rcp; } @@ -3169,7 +3254,7 @@ xml_print_datatype(hid_t type) /* <FloatType ByteOrder="bo" Size="bytes" SignBitLocation="bytes" ExponentBits="eb" ExponentLocation="el" - MatissaBits="mb" MatissaLocation="ml" /> */ + MantissaBits="mb" MantissaLocation="ml" /> */ ord = H5Tget_order(type); indentation(indent); printf("<AtomicType>\n"); @@ -3296,17 +3381,15 @@ xml_print_datatype(hid_t type) if (!type_table->objs[i].recorded) { /* 'anonymous' NDT. Use it's object num. as it's name. */ - printf("<NamedDataTypePtr OBJ-XID=\""); - printf("/#%lu:%lu", + printf("<NamedDataTypePtr OBJ-XID=\"/#%lu:%lu\"/>\n", type_table->objs[i].objno[0], type_table->objs[i].objno[1]); - printf("\"/>\n"); } else { /* point to the NDT by name */ - printf("<NamedDataTypePtr OBJ-XID=\""); - printf("%s", - xml_escape_the_name(type_table->objs[i].objname)); - printf("\"/>\n"); + char *t_objname = xml_escape_the_name(type_table->objs[i].objname); + + printf("<NamedDataTypePtr OBJ-XID=\"%s\"/>\n", t_objname); + free(t_objname); } } else { printf("<!-- h5dump error: unknown committed type. -->\n"); @@ -3325,13 +3408,16 @@ xml_print_datatype(hid_t type) /* <DataType > */ indent += COL; for (i = 0; i < nmembers; i++) { + char *t_fname; + fname = H5Tget_member_name(type, i); mtype = H5Tget_member_type(type, i); indentation(indent); - printf("<Field FieldName=\"%s\">\n", - xml_escape_the_name(fname)); + t_fname = xml_escape_the_name(fname); + printf("<Field FieldName=\"%s\">\n", t_fname); free(fname); + free(t_fname); indent += COL; indentation(indent); printf("<DataType>\n"); @@ -3492,17 +3578,15 @@ xml_dump_datatype(hid_t type) practice: use it's object ref as its name */ - printf("<NamedDataTypePtr OBJ-XID=\""); - printf("/#%lu:%lu", + printf("<NamedDataTypePtr OBJ-XID=\"/#%lu:%lu\"/>\n", type_table->objs[i].objno[0], type_table->objs[i].objno[1]); - printf("\"/>\n"); } else { /* pointer to a named data type already in XML */ - printf("<NamedDataTypePtr OBJ-XID=\""); - printf("%s", - xml_escape_the_name(type_table->objs[i].objname)); - printf("\"/>\n"); + char *t_objname = xml_escape_the_name(type_table->objs[i].objname); + + printf("<NamedDataTypePtr OBJ-XID=\"%s\"/>\n", t_objname); + free(t_objname); } } else { printf("<!-- h5dump error: unknown committed type. -->\n"); @@ -3612,7 +3696,6 @@ xml_dump_data(hid_t obj_id, int obj_data) int stdindent = COL; /* should be 3 */ outputformat->line_ncols = nCols; - indent += COL; /* @@ -3708,10 +3791,12 @@ xml_dump_data(hid_t obj_id, int obj_data) static herr_t xml_dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) { - hid_t attr_id, type, space; + hid_t attr_id, type, space; + char *t_aname = xml_escape_the_name(attr_name); indentation(indent); - printf("<Attribute Name=\"%s\">\n", xml_escape_the_name(attr_name)); + printf("<Attribute Name=\"%s\">\n", t_aname); + free(t_aname); if ((attr_id = H5Aopen_name(attr, attr_name)) >= 0) { type = H5Aget_type(attr_id); @@ -3729,8 +3814,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) case H5T_OPAQUE: case H5T_ENUM: case H5T_ARRAY: - dump_function_table->dump_data_function(attr_id, - ATTRIBUTE_DATA); + dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA); break; case H5T_TIME: @@ -3748,10 +3832,8 @@ xml_dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) case H5T_COMPOUND: indentation(indent); - printf - ("<!-- Note: format of compound data not specified -->\n"); - dump_function_table->dump_data_function(attr_id, - ATTRIBUTE_DATA); + printf("<!-- Note: format of compound data not specified -->\n"); + dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA); break; case H5T_REFERENCE: @@ -3768,8 +3850,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, void UNUSED * op_data) case H5T_VLEN: printf("<!-- Note: format of VL data not specified -->\n"); - dump_function_table->dump_data_function(attr_id, - ATTRIBUTE_DATA); + dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA); break; default: indentation(indent); @@ -3831,7 +3912,7 @@ xml_dump_named_datatype(hid_t type, const char *name) char *fname; char *tmp; - tmp = (char *) malloc(strlen(prefix) + strlen(name) + 2); + tmp = malloc(strlen(prefix) + strlen(name) + 2); strcpy(tmp, prefix); strcat(tmp, "/"); strcat(tmp, name); @@ -3846,18 +3927,28 @@ xml_dump_named_datatype(hid_t type, const char *name) in the event we want to do something else in the future. */ + char *t_tmp = xml_escape_the_name(tmp); + char *t_prefix = xml_escape_the_name(prefix); + printf("<NamedDataType Name=\"%s\" OBJ-XID=\"%s\" Parents=\"%s\">\n", - name, - xml_escape_the_name(tmp), - (strcmp(prefix, "") ? xml_escape_the_name(prefix) : "root")); + name, t_tmp, (strcmp(prefix, "") ? t_prefix : "root")); + free(t_tmp); + free(t_prefix); } else { + char *t_name = xml_escape_the_name(name); + char *t_prefix = xml_escape_the_name(prefix); + char *t_tmp = xml_escape_the_name(tmp); + printf("<NamedDataType Name=\"%s\" OBJ-XID=\"%s\" Parents=\"%s\">\n", - xml_escape_the_name(name), - xml_escape_the_name(tmp), - (strcmp(prefix, "") ? xml_escape_the_name(prefix) : "root")); + t_name, t_tmp, (strcmp(prefix, "") ? t_prefix : "root")); + + free(t_name); + free(t_prefix); + free(t_tmp); } indent += COL; + if (H5Tget_class(type) == H5T_COMPOUND) { /* Dump this here for sure. */ nmembers = H5Tget_nmembers(type); @@ -3867,11 +3958,15 @@ xml_dump_named_datatype(hid_t type, const char *name) indent += COL; for (x = 0; x < nmembers; x++) { + char *t_fname; + fname = H5Tget_member_name(type, x); mtype = H5Tget_member_type(type, x); indentation(indent); - printf("<Field FieldName=\"%s\">\n", xml_escape_the_name(fname)); + t_fname = xml_escape_the_name(fname); + printf("<Field FieldName=\"%s\">\n", t_fname); free(fname); + free(t_fname); if ((H5Tget_class(mtype) == H5T_COMPOUND) || (H5Tget_class(mtype) == H5T_VLEN) @@ -3960,15 +4055,23 @@ xml_dump_group(hid_t gid, const char *name) } } } + indentation(indent); + if (isRoot) { printf("<RootGroup OBJ-XID=\"root\">\n"); } else { + char *t_name = xml_escape_the_name(name); + char *t_tmp = xml_escape_the_name(tmp); + char *t_par = xml_escape_the_name(par); + printf("<Group Name=\"%s\" OBJ-XID=\"%s\" Parents=\"%s\" >\n", - xml_escape_the_name(name), - xml_escape_the_name(tmp), - (strcmp(prefix, "") ? xml_escape_the_name(par) : "root")); + t_name, t_tmp, (strcmp(prefix, "") ? t_par : "root")); + free(t_name); + free(t_tmp); + free(t_par); } + indent += COL; H5Gget_objinfo(gid, ".", TRUE, &statbuf); @@ -3978,13 +4081,16 @@ xml_dump_group(hid_t gid, const char *name) if (i < 0) { indentation(indent); - fprintf(stderr, "h5dump error: internal error (line %d)\n", __LINE__); + error_msg(progname, "internal error (file %s:line %d)\n", + __FILE__, __LINE__); d_status = EXIT_FAILURE; } else if (group_table->objs[i].displayed) { /* already seen: enter a groupptr */ + char *t_objname = xml_escape_the_name(group_table->objs[i].objname); + indentation(indent + COL); - printf("<GroupPtr OBJ-XID=\"%s\"/>\n", - xml_escape_the_name(group_table->objs[i].objname)); + printf("<GroupPtr OBJ-XID=\"%s\"/>\n", t_objname); + free(t_objname); } else { /* first time this group has been seen -- describe it */ strcpy(group_table->objs[i].objname, prefix); @@ -4008,8 +4114,7 @@ xml_dump_group(hid_t gid, const char *name) sprintf(typename, "#%lu:%lu", type_table->objs[i].objno[0], type_table->objs[i].objno[1]); - dump_function_table->dump_named_datatype_function - (type, typename); + dump_function_table->dump_named_datatype_function(type, typename); H5Tclose(type); H5Dclose(dset); } @@ -4022,14 +4127,13 @@ xml_dump_group(hid_t gid, const char *name) } } else { /* 1. do all the attributes of the group */ - H5Aiterate(gid, NULL, dump_function_table->dump_attribute_function, - NULL); + H5Aiterate(gid, NULL, dump_function_table->dump_attribute_function, NULL); - /* iterate through all the members */ - xtype = H5G_GROUP; - H5Giterate(gid, ".", NULL, dump_all, (void *) &xtype); - xtype = H5G_DATASET; - H5Giterate(gid, ".", NULL, dump_all, (void *) &xtype); + /* iterate through all the members */ + xtype = H5G_GROUP; + H5Giterate(gid, ".", NULL, dump_all, (void *) &xtype); + xtype = H5G_DATASET; + H5Giterate(gid, ".", NULL, dump_all, (void *) &xtype); if (!strcmp(name, "/") && unamedtype) { /* Very special case: dump unamed type in root group */ for (i = 0; i < type_table->nobjs; i++) { @@ -4039,8 +4143,7 @@ xml_dump_group(hid_t gid, const char *name) sprintf(typename, "#%lu:%lu", type_table->objs[i].objno[0], type_table->objs[i].objno[1]); - dump_function_table->dump_named_datatype_function(type, - typename); + dump_function_table->dump_named_datatype_function(type, typename); H5Tclose(type); H5Dclose(dset); } @@ -4144,13 +4247,19 @@ xml_print_refs(hid_t did, int source) for (i = 0; i < ssiz; i++) { path = lookup_ref_path(refbuf); indentation(indent + COL); - if (path == NULL) { + + if (!path) { printf("\"%s\"\n", "NULL"); } else { - printf("\"%s\"\n", xml_escape_the_string(path, -1)); + char *t_path = xml_escape_the_string(path, -1); + + printf("\"%s\"\n", t_path); + free(t_path); } + refbuf++; } + return SUCCEED; } @@ -4234,11 +4343,16 @@ xml_print_strs(hid_t did, int source) for (i = 0; i < ssiz; i++) { strncpy(onestring, bp, tsiz); indentation(indent + COL); - if (onestring == NULL) { + + if (!onestring) { printf("\"%s\"\n", "NULL"); } else { + char *t_onestring = xml_escape_the_string(onestring, (int)tsiz); + printf("\"%s\"\n", xml_escape_the_string(onestring, (int)tsiz)); + free(t_onestring); } + bp += tsiz; } return SUCCEED; @@ -4312,15 +4426,24 @@ xml_dump_dataset(hid_t did, const char *name) int ndims; int i; char *tmp; + char *t_name, *t_tmp, *t_prefix; - tmp = (char *) malloc(strlen(prefix) + strlen(name) + 2); + tmp = malloc(strlen(prefix) + strlen(name) + 2); strcpy(tmp, prefix); strcat(tmp, "/"); strcat(tmp, name); indentation(indent); + + t_name = xml_escape_the_name(name); + t_tmp = xml_escape_the_name(tmp); + t_prefix = xml_escape_the_name(prefix); + printf("<Dataset Name=\"%s\" OBJ-XID=\"%s\" Parents=\"%s\">\n", - xml_escape_the_name(name), xml_escape_the_name(tmp), - (strcmp(prefix, "") ? xml_escape_the_name(prefix) : "root")); + t_name, t_tmp, (strcmp(prefix, "") ? t_prefix : "root")); + + free(t_name); + free(t_tmp); + free(t_prefix); dcpl = H5Dget_create_plist(did); type = H5Dget_type(did); @@ -4343,10 +4466,12 @@ xml_dump_dataset(hid_t did, const char *name) check_compression(dcpl); indent += COL; + for (i = 0; i < ndims; i++) { indentation(indent); - HDfprintf(stdout,"<ChunkDimension DimSize=\"%Hu\" />\n", chsize[i]); + HDfprintf(stdout, "<ChunkDimension DimSize=\"%Hu\" />\n", chsize[i]); } + indent -= COL; indentation(indent); @@ -4366,6 +4491,7 @@ xml_dump_dataset(hid_t did, const char *name) H5Aiterate(did, NULL, dump_function_table->dump_attribute_function, NULL); indent -= COL; i = H5Dget_storage_size(did); + if (display_data && (i > 0)) { switch (H5Tget_class(type)) { case H5T_INTEGER: @@ -4510,10 +4636,13 @@ xml_print_enum(hid_t type) /* Print members */ indent += COL; for (i = 0; i < nmembs; i++) { + char *t_name = xml_escape_the_name(name[i]); + indentation(indent); printf("<EnumElement>\n"); indentation(indent + COL); - printf("%s\n", xml_escape_the_name(name[i])); + printf("%s\n", t_name); + free(t_name); indentation(indent); printf("</EnumElement>\n"); indentation(indent); |