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-rw-r--r--tools/h5dump/CMakeLists.txt2
-rw-r--r--tools/h5dump/h5dump.c10
-rw-r--r--tools/h5dump/h5dump_ddl.c203
-rw-r--r--tools/h5dump/h5dump_xml.c79
4 files changed, 66 insertions, 228 deletions
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt
index fad306c..97cf0e5 100644
--- a/tools/h5dump/CMakeLists.txt
+++ b/tools/h5dump/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 3.10)
+cmake_minimum_required (VERSION 3.12)
project (HDF5_TOOLS_H5DUMP C)
# --------------------------------------------------------------------
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index 175dae7..601e320 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -552,6 +552,7 @@ set_sort_by(const char *form)
* parameter to a H5_iter_order_t return value
* current order values are [ascending | descending ]
*
+ * Return: H5_iter_order_t form of order or H5_ITER_UNKNOWN if none found
*-------------------------------------------------------------------------
*/
static H5_iter_order_t
@@ -629,8 +630,7 @@ parse_hsize_list(const char *h_list, subset_d *d)
/*-------------------------------------------------------------------------
* Function: parse_subset_params
*
- * Purpose: Parse the so-called "terse" syntax for specifying subsetting
- * parameters.
+ * Purpose: Parse the so-called "terse" syntax for specifying subsetting parameters.
*
* Return: Success: struct subset_t object
* Failure: NULL
@@ -1379,8 +1379,8 @@ error:
int
main(int argc, const char *argv[])
{
- hid_t fid = -1;
- hid_t gid = -1;
+ hid_t fid = H5I_INVALID_HID;
+ hid_t gid = H5I_INVALID_HID;
hid_t fapl_id = H5P_DEFAULT;
H5E_auto2_t func;
H5E_auto2_t tools_func;
@@ -1689,6 +1689,8 @@ main(int argc, const char *argv[])
/* To Do: clean up XML table */
+ H5Eset_auto2(H5E_DEFAULT, func, edata);
+
leave(h5tools_getstatus());
done:
diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c
index c324a4a..be0f723 100644
--- a/tools/h5dump/h5dump_ddl.c
+++ b/tools/h5dump/h5dump_ddl.c
@@ -41,11 +41,6 @@ static int dump_extlink(hid_t group, const char *linkname, const char *objn
* atomic datatype or committed/transient datatype.
*
* Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
void
@@ -70,11 +65,6 @@ dump_datatype(hid_t type)
* array, or others.
*
* Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
void
@@ -97,14 +87,7 @@ dump_dataspace(hid_t space)
* Purpose: attribute function callback called by H5Aiterate2, displays the attribute
*
* Return: Success: SUCCEED
- *
* Failure: FAIL
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications: Pedro Vicente, October 4, 2007
- * Added H5A_info_t parameter to conform with H5Aiterate2
- *
*-------------------------------------------------------------------------
*/
herr_t
@@ -120,6 +103,8 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent / COL;
ctx.cur_column = dump_indent;
+ ctx.display_index = display_ai;
+ ctx.display_char = display_char;
attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT);
oid_output = display_oid;
@@ -144,7 +129,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
outputformat = &string_dataformat;
h5dump_type_table = type_table;
- h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id, display_ai, display_char);
+ h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id);
h5dump_type_table = NULL;
if(attr_id < 0) {
@@ -163,18 +148,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
* displays everything in the specified object
*
* Return: Success: SUCCEED
- *
* Failure: FAIL
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- * RMcG, November 2000
- * Added XML support. Also, optionally checks the op_data argument
- *
- * PVN, May 2008
- * Dump external links
- *
*-------------------------------------------------------------------------
*/
static herr_t
@@ -183,12 +157,12 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
hid_t obj;
hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */
herr_t ret = SUCCEED;
- char *obj_path = NULL; /* Full path of object */
- h5tools_str_t buffer; /* string into which to render */
- h5tools_context_t ctx; /* print context */
+ char *obj_path = NULL; /* Full path of object */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
h5tool_format_t *outputformat = &h5tools_dataformat;
h5tool_format_t string_dataformat;
- hsize_t curr_pos = 0; /* total data element position */
+ hsize_t curr_pos = 0; /* total data element position */
/* setup */
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
@@ -570,7 +544,6 @@ done:
* Purpose: Iterate and display attributes within the specified group
*
* Return: void
- *
*-------------------------------------------------------------------------
*/
void
@@ -600,7 +573,6 @@ attr_iteration(hid_t gid, unsigned attr_crt_order_flags)
* Purpose: Iterate and display links within the specified group
*
* Return: void
- *
*-------------------------------------------------------------------------
*/
void
@@ -621,15 +593,6 @@ link_iteration(hid_t gid, unsigned crt_order_flags)
* Purpose: Dump named datatype
*
* Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- * Pedro Vicente, March 27, 2006
- * added display of attributes
- * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for
- * other iteration orders
- *
*-------------------------------------------------------------------------
*/
void
@@ -637,10 +600,10 @@ dump_named_datatype(hid_t tid, const char *name)
{
H5O_info_t oinfo;
unsigned attr_crt_order_flags;
- hid_t tcpl_id = -1; /* datatype creation property list ID */
- hsize_t curr_pos = 0; /* total data element position */
+ hid_t tcpl_id = H5I_INVALID_HID; /* datatype creation property list ID */
+ hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
- h5tools_context_t ctx; /* print context */
+ h5tools_context_t ctx; /* print context */
h5tool_format_t *outputformat = &h5tools_dataformat;
h5tool_format_t string_dataformat;
@@ -757,16 +720,6 @@ done:
* Purpose: Dump everything within the specified group
*
* Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- *
- * Call to dump_all_cb -- add parameter to select everything.
- *
- * Pedro Vicente, October 1, 2007
- * handle several iteration orders for attributes and groups
- *
*-------------------------------------------------------------------------
*/
void
@@ -779,11 +732,11 @@ dump_group(hid_t gid, const char *name)
unsigned crt_order_flags;
unsigned attr_crt_order_flags;
char type_name[1024];
- h5tools_str_t buffer; /* string into which to render */
- h5tools_context_t ctx; /* print context */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
h5tool_format_t *outputformat = &h5tools_dataformat;
h5tool_format_t string_dataformat;
- hsize_t curr_pos = 0; /* total data element position */
+ hsize_t curr_pos = 0; /* total data element position */
if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
error_msg("error in getting group creation property list ID\n");
@@ -921,14 +874,6 @@ dump_group(hid_t gid, const char *name)
* Purpose: Dump the specified data set
*
* Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- * Pedro Vicente, 2004, added dataset creation property list display
- * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for
- * other iteration orders
- *
*-------------------------------------------------------------------------
*/
void
@@ -937,11 +882,11 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
h5tools_context_t ctx; /* print context */
h5tool_format_t *outputformat = &h5tools_dataformat;
h5tool_format_t string_dataformat;
- hid_t type, space;
- unsigned attr_crt_order_flags;
- hid_t dcpl_id; /* dataset creation property list ID */
- h5tools_str_t buffer; /* string into which to render */
- hsize_t curr_pos = 0; /* total data element position */
+ hid_t type, space;
+ unsigned attr_crt_order_flags;
+ hid_t dcpl_id; /* dataset creation property list ID */
+ h5tools_str_t buffer; /* string into which to render */
+ hsize_t curr_pos = 0; /* total data element position */
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent / COL;
@@ -1013,6 +958,9 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
}
H5Pclose(dcpl_id);
+ ctx.sset = sset;
+ ctx.display_index = display_ai;
+ ctx.display_char = display_char;
if(display_data) {
unsigned data_loop = 1;
unsigned u;
@@ -1056,7 +1004,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
case H5T_VLEN:
case H5T_ARRAY:
{
- h5tools_dump_data(rawoutstream, outputformat, &ctx, did, TRUE, sset, display_ai, display_char);
+ h5tools_dump_data(rawoutstream, outputformat, &ctx, did, TRUE);
}
break;
@@ -1099,13 +1047,6 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
* Purpose: Dump attribute or dataset data
*
* Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications: pvn, print the matrix indices
- * Albert Cheng, 2004/11/18
- * Add --string printing for attributes too.
- *
*-------------------------------------------------------------------------
*/
void
@@ -1136,10 +1077,13 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent / COL;
ctx.cur_column = dump_indent;
+ ctx.sset = sset;
+ ctx.display_index = display_index;
+ ctx.display_char = display_char;
if(obj_data == DATASET_DATA)
print_dataset = TRUE;
- h5tools_dump_data(rawoutstream, outputformat, &ctx, obj_id, print_dataset, sset, display_index, display_char);
+ h5tools_dump_data(rawoutstream, outputformat, &ctx, obj_id, print_dataset);
}
@@ -1149,11 +1093,6 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
* Purpose: prints file creation property list information
*
* Return: void
- *
- * Programmer: pvn
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
void
@@ -1261,11 +1200,6 @@ dump_fcpl(hid_t fid)
* Purpose: prints all objects
*
* Return: void
- *
- * Programmer: pvn
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
void
@@ -1436,13 +1370,12 @@ lnk_search(const char *path, const H5L_info_t *li, void *_op_data)
* Purpose: Handle objects from the command.
*
* Return: void
- *
*-------------------------------------------------------------------------
*/
void
handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name)
{
- hid_t gid = -1;
+ hid_t gid = H5I_INVALID_HID;
if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) {
error_msg("unable to open root group\n");
@@ -1491,30 +1424,21 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H
* Purpose: Handle the attributes from the command.
*
* Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- *
- * PVN, May 2008
- * add an extra parameter PE, to allow printing/not printing of error messages
- *
*-------------------------------------------------------------------------
*/
void
-handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name)
+handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name)
{
- hid_t oid = -1;
- hid_t attr_id = -1;
+ hid_t oid = H5I_INVALID_HID;
+ hid_t attr_id = H5I_INVALID_HID;
char *obj_name = NULL;
char *attr_name = NULL;
int j;
- h5tools_str_t buffer; /* string into which to render */
- h5tools_context_t ctx; /* print context */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
h5tool_format_t *outputformat = &h5tools_dataformat;
h5tool_format_t string_dataformat;
- hsize_t curr_pos = 0; /* total data element position */
+ hsize_t curr_pos = 0; /* total data element position */
j = (int)HDstrlen(attr) - 1;
obj_name = (char *)HDmalloc((size_t)j + 2);
@@ -1540,6 +1464,8 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent / COL;
ctx.cur_column = dump_indent;
+ ctx.display_index = display_ai;
+ ctx.display_char = display_char;
string_dataformat = *outputformat;
@@ -1599,7 +1525,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
attr_data_output = display_attr_data;
h5dump_type_table = type_table;
- h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id, display_ai, display_char);
+ h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id);
h5dump_type_table = NULL;
if(attr_id < 0) {
@@ -1637,19 +1563,6 @@ error:
* Purpose: Handle the datasets from the command.
*
* Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- * Pedro Vicente, Tuesday, January 15, 2008
- * check for block overlap\
- *
- * Pedro Vicente, May 8, 2008
- * added a flag PE that prints/not prints error messages
- * added for cases of external links not found, to avoid printing of
- * objects not found, since external links are dumped on a trial error basis
- *
*-------------------------------------------------------------------------
*/
void
@@ -1797,18 +1710,6 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
* Purpose: Handle the groups from the command.
*
* Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications: Pedro Vicente, September 26, 2007
- * handle creation order
- *
- * Pedro Vicente, May 8, 2008
- * added a flag PE that prints/not prints error messages
- * added for cases of external links not found, to avoid printing of
- * objects not found, since external links are dumped on a trial error basis
- *
*-------------------------------------------------------------------------
*/
void
@@ -1853,12 +1754,6 @@ handle_groups(hid_t fid, const char *group, void H5_ATTR_UNUSED *data, int pe, c
* Purpose: Handle soft or UD links from the command.
*
* Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
void
@@ -1939,17 +1834,6 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT
* Purpose: Handle the datatypes from the command.
*
* Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- *
- * Pedro Vicente, May 8, 2008
- * added a flag PE that prints/not prints error messages
- * added for cases of external links not found, to avoid printing of
- * objects not found, since external links are dumped on a trial error basis
- *
*-------------------------------------------------------------------------
*/
void
@@ -2014,19 +1898,10 @@ handle_datatypes(hid_t fid, const char *type, void H5_ATTR_UNUSED * data, int pe
/*-------------------------------------------------------------------------
* Function: dump_extlink
*
- * made by: PVN
- *
* Purpose: Dump an external link
- * Since external links are soft links, they are dumped on a trial error
- * basis, attempting to dump as a dataset, as a group and as a named datatype
- * Error messages are supressed
- *
- * Modifications:
- * Neil Fortner
- * 13 October 2008
- * Function basically rewritten. No longer directly opens the target file,
- * now initializes a new set of tables for the external file. No longer
- * dumps on a trial and error basis, but errors are still suppressed.
+ * Function does not directly open the target file,
+ * it initializes a new set of tables for the external file.
+ * Errors are suppressed.
*
*-------------------------------------------------------------------------
*/
diff --git a/tools/h5dump/h5dump_xml.c b/tools/h5dump/h5dump_xml.c
index c19685c..a484ff4 100644
--- a/tools/h5dump/h5dump_xml.c
+++ b/tools/h5dump/h5dump_xml.c
@@ -1776,22 +1776,15 @@ xml_dump_dataspace(hid_t space)
* the h5tools library.
*
* Return: void
- *
- * Programmer: REMcG
*-------------------------------------------------------------------------
*/
void
-xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, int H5_ATTR_UNUSED pindex)
+xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED *sset, int H5_ATTR_UNUSED pindex)
{
- hid_t space = -1;
- hid_t type = -1;
- hid_t p_type = -1;
- hsize_t size[64];
- hsize_t nelmts = 1;
- int ndims;
- int i;
+ hid_t space = H5I_INVALID_HID;
+ hid_t type = H5I_INVALID_HID;
+ hid_t p_type = H5I_INVALID_HID;
int status = -1;
- void *buf = NULL;
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
h5tools_context_t ctx; /* print context */
@@ -1860,7 +1853,7 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset,
datactx.need_prefix = TRUE;
datactx.indent_level = ctx.indent_level;
datactx.cur_column = ctx.cur_column;
- status = h5tools_dump_dset(rawoutstream, outputformat, &datactx, obj_id, NULL);
+ status = h5tools_dump_dset(rawoutstream, outputformat, &datactx, obj_id);
}
}
else {
@@ -1880,47 +1873,17 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset,
status = xml_print_strs(obj_id, ATTRIBUTE_DATA);
}
else { /* all other data */
- /* VL data special information */
- unsigned int vl_data = 0; /* contains VL datatypes */
-
- p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT);
-
- /* Check if we have VL data in the dataset's datatype */
- if (h5tools_detect_vlen(p_type) == TRUE)
- vl_data = TRUE;
-
- H5Tclose(type);
-
space = H5Aget_space(obj_id);
if(space == H5S_NULL || space == H5S_NO_CLASS) {
status = SUCCEED;
}
else {
- ndims = H5Sget_simple_extent_dims(space, size, NULL);
-
- for (i = 0; i < ndims; i++)
- nelmts *= size[i];
-
- if((buf = HDmalloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type))))) == NULL) {
- error_msg("unable to allocate buffer\n");
- h5tools_setstatus(EXIT_FAILURE);
- status = FAIL;
- }
- else {
- if (H5Aread(obj_id, p_type, buf) >= 0) {
- h5tools_context_t datactx;
- HDmemset(&datactx, 0, sizeof(datactx));
- datactx.need_prefix = TRUE;
- datactx.indent_level = ctx.indent_level;
- datactx.cur_column = ctx.cur_column;
- status = h5tools_dump_mem(rawoutstream, outputformat, &datactx, obj_id, p_type, space, buf);
- }
- /* Reclaim any VL memory, if necessary */
- if (vl_data)
- H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
-
- HDfree(buf);
- }
+ h5tools_context_t datactx;
+ HDmemset(&datactx, 0, sizeof(datactx));
+ datactx.need_prefix = TRUE;
+ datactx.indent_level = ctx.indent_level;
+ datactx.cur_column = ctx.cur_column;
+ status = h5tools_dump_mem(rawoutstream, outputformat, &datactx, obj_id);
}
H5Tclose(p_type);
H5Sclose(space);
@@ -1980,9 +1943,9 @@ herr_t
xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *info,
void H5_ATTR_UNUSED * op_data)
{
- hid_t attr_id = -1;
- hid_t type = -1;
- hid_t space = -1;
+ hid_t attr_id = H5I_INVALID_HID;
+ hid_t type = H5I_INVALID_HID;
+ hid_t space = H5I_INVALID_HID;
H5S_class_t space_type;
hsize_t curr_pos = 0; /* total data element position */
h5tools_str_t buffer; /* string into which to render */
@@ -2817,8 +2780,8 @@ static int
xml_print_refs(hid_t did, int source)
{
herr_t e;
- hid_t type = -1;
- hid_t space = -1;
+ hid_t type = H5I_INVALID_HID;
+ hid_t space = H5I_INVALID_HID;
hssize_t ssiz = -1;
hsize_t i;
size_t tsiz;
@@ -2966,8 +2929,8 @@ static int
xml_print_strs(hid_t did, int source)
{
herr_t e;
- hid_t type = -1;
- hid_t space = -1;
+ hid_t type = H5I_INVALID_HID;
+ hid_t space = H5I_INVALID_HID;
hssize_t ssiz = -1;
htri_t is_vlstr = FALSE;
size_t tsiz = 0;
@@ -3577,12 +3540,10 @@ xml_dump_fill_value(hid_t dcpl, hid_t type)
* Purpose: Dump a description of an HDF5 dataset in XML.
*
* Return: void
- *
- * Programmer: REMcG
*-------------------------------------------------------------------------
*/
void
-xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * sset)
+xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *sset)
{
hid_t type;
hid_t space;
@@ -4153,7 +4114,7 @@ xml_print_enum(hid_t type)
unsigned char *value = NULL; /*value array */
unsigned nmembs; /*number of members */
hid_t super; /*enum base integer type */
- hid_t native = -1; /*native integer datatype */
+ hid_t native = H5I_INVALID_HID; /*native integer datatype */
size_t dst_size; /*destination value type size */
unsigned i; /*miscellaneous counters */
size_t j;
generated by cgit v0.12 at 2024-08-28 06:10:34 (GMT)