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-rw-r--r--tools/h5dump/h5dump.c1467
-rw-r--r--tools/h5dump/h5dump.h129
-rw-r--r--tools/h5dump/h5dumpgentest.c2
3 files changed, 836 insertions, 762 deletions
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index 2a99989..8a5e192 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -59,7 +59,7 @@ static char *prefix;
static const char *driver = NULL; /* The driver to open the file with. */
-static const dump_header *dump_header_format;
+static const h5dump_header_t *dump_header_format;
/* things to display or which are set via command line parameters */
static int display_all = TRUE;
@@ -86,21 +86,20 @@ static int doxml = 0;
static int useschema = 1;
static const char *xml_dtd_uri = NULL;
static const char *xmlnsprefix="hdf5:";
+static int indent; /*how far in to indent the line */
/** end XML **/
/* internal functions */
-static hid_t h5_fileaccess(void);
-static void dump_oid(hid_t oid);
-static void print_enum(hid_t type);
-static herr_t dump_all(hid_t group, const char *name, void *op_data);
-#ifdef LATER
-static void check_compression(hid_t);
-#endif /* LATER */
-static int xml_name_to_XID(const char *, char *, int , int );
-static void init_prefix(char **prfx, size_t prfx_len);
-
-static h5dump_t dataformat = {
+static hid_t h5_fileaccess(void);
+static void dump_oid(hid_t oid);
+static void print_enum(hid_t type);
+static herr_t dump_all(hid_t group, const char *name, void *op_data);
+static int xml_name_to_XID(const char *, char *, int , int );
+static void init_prefix(char **prfx, size_t prfx_len);
+static void add_prefix(char **prfx, size_t *prfx_len, const char *name);
+
+static h5tool_format_t dataformat = {
0, /*raw */
"", /*fmt_raw */
@@ -184,7 +183,7 @@ static h5dump_t dataformat = {
*
* This table only affects XML output.
*/
-static h5dump_t xml_dataformat = {
+static h5tool_format_t xml_dataformat = {
0, /*raw */
"", /*fmt_raw */
@@ -255,13 +254,13 @@ static h5dump_t xml_dataformat = {
/** XML **/
-static const dump_header standardformat = {
+static const h5dump_header_t standardformat = {
"standardformat", /*name */
"HDF5", /*fileebgin */
"", /*fileend */
SUPER_BLOCK, /*bootblockbegin */
"", /*bootblockend */
- GROUPNAME, /*groupbegin */
+ GROUP, /*groupbegin */
"", /*groupend */
DATASET, /*datasetbegin */
"", /*datasetend */
@@ -1335,244 +1334,263 @@ static herr_t
dump_all(hid_t group, const char *name, void * op_data)
{
hid_t obj;
- char *targbuf, *tmp = NULL;
+ char *obj_path = NULL; /* Full path of object */
H5G_stat_t statbuf;
herr_t ret = SUCCEED;
- H5Gget_objinfo(group, name, FALSE, &statbuf);
+ /* Stat the object */
+ if(H5Gget_objinfo(group, name, FALSE, &statbuf) < 0) {
+ error_msg(progname, "unable to get object information\n");
+ d_status = EXIT_FAILURE;
+ ret = FAIL;
+ goto done;
+ } /* end if */
if (*(int *)op_data != H5G_UNKNOWN && statbuf.type != *(int *) op_data)
goto done;
- tmp = malloc(strlen(prefix) + strlen(name) + 2);
- strcpy(tmp, prefix);
+ /* Build the object's path name */
+ obj_path = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDassert(obj_path);
+ HDstrcpy(obj_path, prefix);
+ HDstrcat(obj_path, "/");
+ HDstrcat(obj_path, name);
switch (statbuf.type) {
- case H5G_LINK:
- indentation(indent);
- targbuf = malloc(statbuf.u.slink.linklen);
+ case H5G_LINK:
+ {
+ char *targbuf;
- if (!doxml) {
- begin_obj(dump_header_format->softlinkbegin, name,
- dump_header_format->softlinkblockbegin);
- indentation(indent + COL);
- }
+ indentation(indent);
+ targbuf = HDmalloc(statbuf.u.slink.linklen);
+ HDassert(targbuf);
- if (H5Gget_linkval(group, name, statbuf.u.slink.linklen, targbuf) < 0) {
- error_msg(progname, "unable to get link value\n");
- d_status = EXIT_FAILURE;
- ret = FAIL;
- } else {
- /* print the value of a soft link */
- if (!doxml) {
- /* Standard DDL: no modification */
- printf("LINKTARGET \"%s\"\n", targbuf);
- } else {
- /* XML */
- char *linkxid = malloc(100);
- char *parentxid = malloc(100);
- char *targetxid = malloc(100);
- char *t_prefix = xml_escape_the_name(strcmp(prefix,"") ? prefix : "/");
- char *t_name = xml_escape_the_name(name);
- char *t_targbuf = xml_escape_the_name(targbuf);
- char *tmp2, *t_tmp;
- int res;
-
- tmp2 = malloc(strlen(prefix) + statbuf.u.slink.linklen + 1);
- strcpy(tmp2, prefix);
-
- if (targbuf && targbuf[0] == '/')
- strcpy(tmp2, targbuf);
- else
- strcat(strcat(tmp2, "/"), targbuf);
-
- t_tmp = xml_escape_the_name(strcat(strcat(tmp, "/"), name));
- xml_name_to_XID(t_tmp,linkxid,100,1);
- xml_name_to_XID(prefix,parentxid,100,1);
-
- res = xml_name_to_XID(tmp2,targetxid,100,0);
-
- if (res == 0) {
- /* target obj found */
- printf("<%sSoftLink LinkName=\"%s\" "
- "OBJ-XID=\"%s\" "
- "H5SourcePath=\"%s\" "
+ if (!doxml) {
+ begin_obj(dump_header_format->softlinkbegin, name,
+ dump_header_format->softlinkblockbegin);
+ indentation(indent + COL);
+ }
+
+ if (H5Gget_linkval(group, name, statbuf.u.slink.linklen, targbuf) < 0) {
+ error_msg(progname, "unable to get link value\n");
+ d_status = EXIT_FAILURE;
+ ret = FAIL;
+ } else {
+ /* print the value of a soft link */
+ if (!doxml) {
+ /* Standard DDL: no modification */
+ printf("LINKTARGET \"%s\"\n", targbuf);
+ } else {
+ /* XML */
+ char linkxid[100];
+ char parentxid[100];
+ char targetxid[100];
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_name = xml_escape_the_name(name);
+ char *t_targbuf = xml_escape_the_name(targbuf);
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_link_path;
+ int res;
+
+ t_link_path = HDmalloc(HDstrlen(prefix) + statbuf.u.slink.linklen + 1);
+ if(targbuf[0] == '/')
+ HDstrcpy(t_link_path, targbuf);
+ else {
+ HDstrcpy(t_link_path, prefix);
+ HDstrcat(HDstrcat(t_link_path, "/"), targbuf);
+ } /* end else */
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ /* Try to create an OBJ-XID for the object pointed to */
+ res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0);
+ if (res == 0) {
+ /* target obj found */
+ printf("<%sSoftLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
"TargetPath=\"%s\" TargetObj=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name,
- linkxid,
- t_tmp,
- t_targbuf, targetxid,
- parentxid, t_prefix);
- free(targetxid);
- } else {
- /* dangling link -- omit from xml attributes */
- printf("<%sSoftLink LinkName=\"%s\" "
- "OBJ-XID=\"%s\" "
- "H5SourcePath=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ t_targbuf, /* TargetPath */
+ targetxid, /* TargetObj */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ } else {
+ /* dangling link -- omit from xml attributes */
+ printf("<%sSoftLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
"TargetPath=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name,
- linkxid,
- t_tmp,
- t_targbuf,
- parentxid, t_prefix);
- }
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ t_targbuf, /* TargetPath */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ }
- free(t_name);
- free(t_targbuf);
- free(t_tmp);
- free(tmp2);
- free(linkxid);
- free(parentxid);
- }
- }
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(t_targbuf);
+ HDfree(t_obj_path);
+ HDfree(t_link_path);
+ }
+ }
- if (!doxml) {
- indentation(indent);
- end_obj(dump_header_format->softlinkend,
- dump_header_format->softlinkblockend);
- }
+ if (!doxml) {
+ indentation(indent);
+ end_obj(dump_header_format->softlinkend,
+ dump_header_format->softlinkblockend);
+ }
- free(targbuf);
- break;
+ HDfree(targbuf);
+ break;
+ }
- case H5G_GROUP:
- if ((obj = H5Gopen(group, name)) < 0) {
- error_msg(progname, "unable to dump group \"%s\"\n", name);
- d_status = EXIT_FAILURE;
- ret = FAIL;
- } else {
- size_t new_len = strlen(prefix) + strlen(name) + 2;
+ case H5G_GROUP:
+ if ((obj = H5Gopen(group, name)) < 0) {
+ error_msg(progname, "unable to dump group \"%s\"\n", name);
+ d_status = EXIT_FAILURE;
+ ret = FAIL;
+ } else {
+ char *old_prefix; /* Pointer to previous prefix */
- if (prefix_len <= new_len) {
- prefix_len = new_len + 1;
- prefix = realloc(prefix, prefix_len);
- }
+ /* Keep copy of prefix before iterating into group */
+ old_prefix = HDstrdup(prefix);
+ HDassert(old_prefix);
- strcat(strcat(prefix, "/"), name);
- dump_function_table->dump_group_function(obj, name);
- strcpy(prefix, tmp);
- H5Gclose(obj);
- }
+ /* Append group name to prefix */
+ add_prefix(&prefix, &prefix_len, name);
- break;
+ /* Iterate into group */
+ dump_function_table->dump_group_function(obj, name);
- case H5G_DATASET:
- if ((obj = H5Dopen(group, name)) >= 0) {
- /* hard link */
- H5Gget_objinfo(obj, ".", TRUE, &statbuf);
+ /* Restore old prefix name */
+ HDstrcpy(prefix, old_prefix);
+ HDfree(old_prefix);
- if (statbuf.u.obj.nlink > 1) {
- obj_t *found_obj; /* Found object */
+ /* Close group */
+ H5Gclose(obj);
+ }
- found_obj = search_obj(dset_table, statbuf.u.obj.objno);
+ break;
- if (found_obj == NULL) {
- indentation(indent);
- begin_obj(dump_header_format->datasetbegin, name,
- dump_header_format->datasetblockbegin);
- indentation(indent + COL);
- error_msg(progname,
- "internal error (file %s:line %d)\n",
- __FILE__, __LINE__);
- indentation(indent);
- end_obj(dump_header_format->datasetend,
- dump_header_format->datasetblockend);
- d_status = EXIT_FAILURE;
- ret = FAIL;
- H5Dclose(obj);
- goto done;
- } else if (found_obj->displayed) {
- indentation(indent);
+ case H5G_DATASET:
+ if ((obj = H5Dopen(group, name)) >= 0) {
+ /* hard link */
+ H5Gget_objinfo(obj, ".", TRUE, &statbuf);
+
+ if (statbuf.u.obj.nlink > 1) {
+ obj_t *found_obj; /* Found object */
+
+ found_obj = search_obj(dset_table, statbuf.u.obj.objno);
+
+ if (found_obj == NULL) {
+ indentation(indent);
+ begin_obj(dump_header_format->datasetbegin, name,
+ dump_header_format->datasetblockbegin);
+ indentation(indent + COL);
+ error_msg(progname,
+ "internal error (file %s:line %d)\n",
+ __FILE__, __LINE__);
+ indentation(indent);
+ end_obj(dump_header_format->datasetend,
+ dump_header_format->datasetblockend);
+ d_status = EXIT_FAILURE;
+ ret = FAIL;
+ H5Dclose(obj);
+ goto done;
+ } else if (found_obj->displayed) {
+ indentation(indent);
+
+ if (!doxml) {
+ begin_obj(dump_header_format->datasetbegin, name,
+ dump_header_format->datasetblockbegin);
+ indentation(indent + COL);
+ printf("%s \"%s\"\n", HARDLINK, found_obj->objname);
+ indentation(indent);
+ end_obj(dump_header_format->datasetend,
+ dump_header_format->datasetblockend);
+ } else {
+ /* the XML version */
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_name = xml_escape_the_name(name);
+ char dsetxid[100];
+ char parentxid[100];
+ char pointerxid[100];
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" "
+ "H5Path=\"%s\" Parents=\"%s\" "
+ "H5ParentPaths=\"%s\">\n",
+ xmlnsprefix,
+ t_name, /* Dataset Name */
+ dsetxid, get_next_xid(), /* OBJ-XID */
+ t_obj_path, /* H5Path */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+
+ indentation(indent + COL);
+ xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
+ printf("<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
+ xmlnsprefix,
+ pointerxid,t_obj_path);
+ indentation(indent);
+ printf("</%sDataset>\n", xmlnsprefix);
+
+ HDfree(t_name);
+ HDfree(t_obj_path);
+ HDfree(t_prefix);
+ }
- if (!doxml) {
- begin_obj(dump_header_format->datasetbegin, name,
- dump_header_format->datasetblockbegin);
- indentation(indent + COL);
- printf("%s \"%s\"\n", HARDLINK, found_obj->objname);
- indentation(indent);
- end_obj(dump_header_format->datasetend,
- dump_header_format->datasetblockend);
- } else {
- /* the XML version */
- char *t_tmp;
- char *t_prefix;
- char *t_name;
- char *dsetxid = malloc(100);
- char *parentxid = malloc(100);
- char *pointerxid = malloc(100);
- char *tx_tmp = malloc(strlen(tmp)+strlen(name)+1);
- strcpy(tx_tmp,tmp);
- t_tmp = xml_escape_the_name(strcat(strcat(tx_tmp, "/"), name));
- t_prefix = xml_escape_the_name(prefix);
- t_name = xml_escape_the_name(name);
- xml_name_to_XID( strcat(strcat(tmp,"/"),name), dsetxid,100,1);
- xml_name_to_XID( prefix ,parentxid,100,1);
-
- printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" "
- "H5Path=\"%s\" Parents=\"%s\" "
- "H5ParentPaths=\"%s\">\n",
- xmlnsprefix,
- t_name, dsetxid, get_next_xid(),
- t_tmp, parentxid,
- (strcmp(prefix, "") ? t_prefix : "/"));
-
- indentation(indent + COL);
- xml_name_to_XID(found_obj->objname,pointerxid,100,1);
- printf("<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
- xmlnsprefix,
- pointerxid,t_tmp);
- indentation(indent);
- printf("</%sDataset>\n", xmlnsprefix);
-
- free(t_name);
- free(dsetxid);
- free(parentxid);
- free(pointerxid);
- free(t_tmp);
- free(tx_tmp);
- free(t_prefix);
- }
-
- H5Dclose(obj);
- goto done;
- } else {
- found_obj->displayed = TRUE;
+ H5Dclose(obj);
+ goto done;
+ } else {
+ found_obj->displayed = TRUE;
+ }
+ } /* end if */
- }
- }
+ dump_function_table->dump_dataset_function(obj, name, NULL);
+ H5Dclose(obj);
+ } else {
+ error_msg(progname, "unable to dump dataset \"%s\"\n", name);
+ d_status = EXIT_FAILURE;
+ ret = FAIL;
+ }
+ break;
- dump_function_table->dump_dataset_function(obj, name, NULL);
- H5Dclose(obj);
- } else {
- error_msg(progname, "unable to dump dataset \"%s\"\n", name);
- d_status = EXIT_FAILURE;
- ret = FAIL;
- }
- break;
+ case H5G_TYPE:
+ if ((obj = H5Topen(group, name)) < 0) {
+ error_msg(progname, "unable to dump data type \"%s\"\n", name);
+ d_status = EXIT_FAILURE;
+ ret = FAIL;
+ } else {
+ dump_function_table->dump_named_datatype_function(obj, name);
+ H5Tclose(obj);
+ }
+ break;
- case H5G_TYPE:
- if ((obj = H5Topen(group, name)) < 0) {
- error_msg(progname, "unable to dump data type \"%s\"\n", name);
- d_status = EXIT_FAILURE;
+ default:
+ error_msg(progname, "unknown object \"%s\"\n", name);
+ d_status = EXIT_FAILURE;
ret = FAIL;
- } else {
- dump_function_table->dump_named_datatype_function(obj, name);
- H5Tclose(obj);
- }
- break;
-
- default:
- error_msg(progname, "unknown object \"%s\"\n", name);
- d_status = EXIT_FAILURE;
- ret = FAIL;
}
done:
- free(tmp);
+ if(obj_path)
+ HDfree(obj_path);
return ret;
}
@@ -1630,19 +1648,19 @@ dump_group(hid_t gid, const char *name)
char type_name[1024], *tmp;
int xtype = H5G_UNKNOWN; /* dump all */
- tmp = malloc(strlen(prefix) + strlen(name) + 2);
- strcpy(tmp, prefix);
+ tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
indentation(indent);
begin_obj(dump_header_format->groupbegin, name,
dump_header_format->groupblockbegin);
indent += COL;
if (display_oid)
- dump_oid(gid);
+ dump_oid(gid);
dump_comment(gid);
- if (!strcmp(name, "/") && unamedtype) {
+ if (!HDstrcmp(name, "/") && unamedtype) {
unsigned u; /* Local index variable */
/* dump unamed type in root group */
@@ -1718,33 +1736,33 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
dump_dataspace(space);
if (display_oid)
- dump_oid(did);
+ dump_oid(did);
if (display_dcpl)
- dump_dcpl(dcpl_id, type, did);
+ dump_dcpl(dcpl_id, type, did);
if (display_data)
switch (H5Tget_class(type)) {
- case H5T_TIME:
- indentation(indent + COL);
- printf("DATA{ not yet implemented.}\n");
- break;
+ case H5T_TIME:
+ indentation(indent + COL);
+ printf("DATA{ not yet implemented.}\n");
+ break;
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_STRING:
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- case H5T_COMPOUND:
- case H5T_REFERENCE:
- case H5T_ENUM:
- case H5T_VLEN:
- case H5T_ARRAY:
- dump_data(did, DATASET_DATA, sset, display_ai);
- break;
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_COMPOUND:
+ case H5T_REFERENCE:
+ case H5T_ENUM:
+ case H5T_VLEN:
+ case H5T_ARRAY:
+ dump_data(did, DATASET_DATA, sset, display_ai);
+ break;
- default:
- break;
+ default:
+ break;
}
indent += COL;
@@ -1775,7 +1793,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
static void
dump_dims(hsize_t *s, int dims)
{
- register int i;
+ int i;
for (i = 0; i < dims; i++) {
printf("%u", (unsigned int)s[i]);
@@ -1864,7 +1882,7 @@ dump_subsetting_header(struct subset_t *sset, int dims)
static void
dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex)
{
- h5dump_t *outputformat = &dataformat;
+ h5tool_format_t *outputformat = &dataformat;
int status = -1;
void *buf;
hid_t space, type, p_type;
@@ -1878,12 +1896,11 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex)
outputformat->do_escape=display_escape;
/* print the matrix indices */
outputformat->pindex=pindex;
- if (outputformat->pindex)
- {
- outputformat->idx_fmt = "(%s): ";
- outputformat->idx_n_fmt = "%lu";
- outputformat->idx_sep = ",";
- outputformat->line_pre = "%s";
+ if (outputformat->pindex) {
+ outputformat->idx_fmt = "(%s): ";
+ outputformat->idx_n_fmt = "%lu";
+ outputformat->idx_sep = ",";
+ outputformat->line_pre = "%s";
}
indent += COL;
@@ -1914,7 +1931,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex)
if (obj_data == DATASET_DATA) {
hid_t f_type = H5Dget_type(obj_id);
char string_prefix[64];
- h5dump_t string_dataformat;
+ h5tool_format_t string_dataformat;
if (display_char && H5Tget_size(f_type) == 1 && H5Tget_class(f_type) == H5T_INTEGER) {
/*
@@ -1954,7 +1971,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex)
status = SUCCEED;
} else {
char string_prefix[64];
- h5dump_t string_dataformat;
+ h5tool_format_t string_dataformat;
type = H5Aget_type(obj_id);
p_type = h5tools_get_native_type(type);
@@ -2062,15 +2079,15 @@ dump_oid(hid_t oid)
static void dump_comment(hid_t obj_id)
{
- char comment[50];
+ char comment[50];
- comment[0] = '\0';
- H5Gget_comment(obj_id, ".", sizeof(comment), comment);
+ comment[0] = '\0';
+ H5Gget_comment(obj_id, ".", sizeof(comment), comment);
- if (comment[0]) {
- indentation(indent);
- printf("COMMENT \"%s\"\n", comment);
- }
+ if (comment[0]) {
+ indentation(indent);
+ printf("COMMENT \"%s\"\n", comment);
+ }
}
@@ -2094,7 +2111,7 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id)
size_t size;
void *buf=NULL;
hsize_t nelmts=1;
- h5dump_t *outputformat = &dataformat;
+ h5tool_format_t *outputformat = &dataformat;
hid_t n_type;
memset(&ctx, 0, sizeof(ctx));
@@ -2113,7 +2130,6 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id)
if (buf)
free (buf);
-
}
@@ -2131,321 +2147,303 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id)
static void
dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
{
- int nfilters; /* number of filters */
- unsigned filt_flags; /* filter flags */
- H5Z_filter_t filtn; /* filter identification number */
- unsigned cd_values[20]; /* filter client data values */
- size_t cd_nelmts; /* filter client number of values */
- char f_name[256]; /* filter name */
- unsigned szip_options_mask;
- unsigned szip_pixels_per_block;
- hsize_t chsize[64]; /* chunk size in elements */
- int rank; /* rank */
- char name[256]; /* external file name */
- off_t offset; /* offset of external file */
- hsize_t size; /* size of external file */
- H5D_fill_value_t fvstatus;
- H5D_alloc_time_t at;
- H5D_fill_time_t ft;
- hsize_t storage_size;
- haddr_t ioffset;
- int i, next;
- unsigned j;
-
- storage_size=H5Dget_storage_size(obj_id);
- ioffset=H5Dget_offset(obj_id);
- next=H5Pget_external_count(dcpl_id);
- strcpy(f_name,"\0");
-
-/*-------------------------------------------------------------------------
- * STORAGE_LAYOUT
- *-------------------------------------------------------------------------
- */
- indentation(indent + COL);
- printf("%s %s\n", STORAGE_LAYOUT, BEGIN);
-
- if (H5D_CHUNKED == H5Pget_layout(dcpl_id))
- {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- printf("%s ", CHUNKED);
- rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize);
- HDfprintf(stdout,"%s %Hu", dump_header_format->dataspacedimbegin, chsize[0]);
- for ( i=1; i<rank; i++)
- HDfprintf(stdout, ", %Hu", chsize[i]);
- printf(" %s\n", dump_header_format->dataspacedimend);
- indentation(indent + COL);
- HDfprintf(stdout, "SIZE %Hu\n ", storage_size);
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
- }
- else if (H5D_COMPACT == H5Pget_layout(dcpl_id))
- {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- printf("%s\n", COMPACT);
- indentation(indent + COL);
- HDfprintf(stdout, "SIZE %Hu\n", storage_size);
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
- }
- else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl_id))
- {
- /*-------------------------------------------------------------------------
- * EXTERNAL_FILE
- *-------------------------------------------------------------------------
- */
- if (next)
- {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- printf("%s\n", CONTIGUOUS);
- indentation(indent + COL);
- printf("%s %s\n", EXTERNAL, BEGIN);
- /*start indent */
- indent += COL;
- for ( j=0; j<(unsigned)next; j++) {
- H5Pget_external(dcpl_id,j,sizeof(name),name,&offset,&size);
+ int nfilters; /* number of filters */
+ unsigned filt_flags; /* filter flags */
+ H5Z_filter_t filtn; /* filter identification number */
+ unsigned cd_values[20]; /* filter client data values */
+ size_t cd_nelmts; /* filter client number of values */
+ char f_name[256]; /* filter name */
+ unsigned szip_options_mask;
+ unsigned szip_pixels_per_block;
+ hsize_t chsize[64]; /* chunk size in elements */
+ int rank; /* rank */
+ char name[256]; /* external file name */
+ off_t offset; /* offset of external file */
+ hsize_t size; /* size of external file */
+ H5D_fill_value_t fvstatus;
+ H5D_alloc_time_t at;
+ H5D_fill_time_t ft;
+ hsize_t storage_size;
+ haddr_t ioffset;
+ int i, next;
+ unsigned j;
+
+ storage_size=H5Dget_storage_size(obj_id);
+ ioffset=H5Dget_offset(obj_id);
+ next=H5Pget_external_count(dcpl_id);
+ strcpy(f_name,"\0");
+
+ /*-------------------------------------------------------------------------
+ * STORAGE_LAYOUT
+ *-------------------------------------------------------------------------
+ */
indentation(indent + COL);
- HDfprintf(stdout,"FILENAME %s SIZE %Hu OFFSET %ld\n",name,size,offset);
- }
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
- }
- else
- {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- printf("%s\n", CONTIGUOUS);
- indentation(indent + COL);
- HDfprintf(stdout,"SIZE %Hu\n", storage_size);
- indentation(indent + COL);
- HDfprintf(stdout,"OFFSET %Hu\n", ioffset);
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
- }
- }
-/*-------------------------------------------------------------------------
- * FILTERS
- *-------------------------------------------------------------------------
- */
- nfilters = H5Pget_nfilters(dcpl_id);
+ printf("%s %s\n", STORAGE_LAYOUT, BEGIN);
+
+ if (H5D_CHUNKED == H5Pget_layout(dcpl_id)) {
+ /*start indent */
+ indent += COL;
+ indentation(indent + COL);
+ printf("%s ", CHUNKED);
+
+ rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize);
+ HDfprintf(stdout,"%s %Hu", dump_header_format->dataspacedimbegin, chsize[0]);
+ for ( i=1; i<rank; i++)
+ HDfprintf(stdout, ", %Hu", chsize[i]);
+ printf(" %s\n", dump_header_format->dataspacedimend);
+ indentation(indent + COL);
+ HDfprintf(stdout, "SIZE %Hu\n ", storage_size);
+
+ /*end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
+ }
+ else if (H5D_COMPACT == H5Pget_layout(dcpl_id)) {
+ /*start indent */
+ indent += COL;
+ indentation(indent + COL);
+ printf("%s\n", COMPACT);
+
+ indentation(indent + COL);
+ HDfprintf(stdout, "SIZE %Hu\n", storage_size);
+
+ /*end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
+ }
+ else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl_id)) {
+ /*-------------------------------------------------------------------------
+ * EXTERNAL_FILE
+ *-------------------------------------------------------------------------
+ */
+ if (next) {
+ /*start indent */
+ indent += COL;
+ indentation(indent + COL);
+ printf("%s\n", CONTIGUOUS);
+
+ indentation(indent + COL);
+ printf("%s %s\n", EXTERNAL, BEGIN);
+
+ /*start indent */
+ indent += COL;
+ for ( j=0; j<(unsigned)next; j++) {
+ H5Pget_external(dcpl_id,j,sizeof(name),name,&offset,&size);
+ indentation(indent + COL);
+ HDfprintf(stdout,"FILENAME %s SIZE %Hu OFFSET %ld\n",name,size,offset);
+ }
+ /*end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
+
+ /*end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
+ }
+ else {
+ /*start indent */
+ indent += COL;
+ indentation(indent + COL);
+ printf("%s\n", CONTIGUOUS);
- indentation(indent + COL);
- printf("%s %s\n", FILTERS, BEGIN);
- indent += COL;
+ indentation(indent + COL);
+ HDfprintf(stdout,"SIZE %Hu\n", storage_size);
+ indentation(indent + COL);
+ HDfprintf(stdout,"OFFSET %Hu\n", ioffset);
+
+ /*end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
+ }
+ }
+ /*-------------------------------------------------------------------------
+ * FILTERS
+ *-------------------------------------------------------------------------
+ */
+ nfilters = H5Pget_nfilters(dcpl_id);
- if (nfilters)
- {
- for (i=0; i<nfilters; i++)
- {
- cd_nelmts = NELMTS(cd_values);
+ indentation(indent + COL);
+ printf("%s %s\n", FILTERS, BEGIN);
+ indent += COL;
+
+ if (nfilters) {
+ for (i=0; i<nfilters; i++) {
+ cd_nelmts = NELMTS(cd_values);
#ifdef H5_WANT_H5_V1_6_COMPAT
- filtn = H5Pget_filter(dcpl_id,
- (unsigned)i,
- &filt_flags,
- &cd_nelmts,
- cd_values,
- sizeof(f_name),
- f_name);
+ filtn = H5Pget_filter(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
+ cd_values, sizeof(f_name), f_name);
#else
- filtn = H5Pget_filter(dcpl_id,
- (unsigned)i,
- &filt_flags,
- &cd_nelmts,
- cd_values,
- sizeof(f_name),
- f_name,
- NULL);
+ filtn = H5Pget_filter(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
+ cd_values, sizeof(f_name), f_name, NULL);
#endif /* H5_WANT_H5_V1_6_COMPAT */
- switch (filtn)
- {
- case H5Z_FILTER_DEFLATE:
+ switch (filtn) {
+ case H5Z_FILTER_DEFLATE:
+ indentation(indent + COL);
+ printf("%s %s %s %d %s\n", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END);
+ break;
+ case H5Z_FILTER_SHUFFLE:
+ indentation(indent + COL);
+ printf("%s\n", SHUFFLE);
+ break;
+ case H5Z_FILTER_FLETCHER32:
+ indentation(indent + COL);
+ printf("%s\n", FLETCHER32);
+ break;
+ case H5Z_FILTER_SZIP:
+ {
+ szip_options_mask=cd_values[0];;
+ szip_pixels_per_block=cd_values[1];
+
+ indentation(indent + COL);
+ printf("%s %s\n",SZIP, BEGIN);
+
+ /*start indent */
+ indent += COL;
+ indentation(indent + COL);
+ printf("PIXELS_PER_BLOCK %d\n", szip_pixels_per_block);
+
+ indentation(indent + COL);
+ if (szip_options_mask & H5_SZIP_CHIP_OPTION_MASK)
+ printf("MODE %s\n", "HARDWARE");
+ else if (szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK)
+ printf("MODE %s\n", "K13");
+
+ indentation(indent + COL);
+ if (szip_options_mask & H5_SZIP_EC_OPTION_MASK)
+ printf("CODING %s\n", "ENTROPY");
+ else if (szip_options_mask & H5_SZIP_NN_OPTION_MASK)
+ printf("CODING %s\n", "NEAREST NEIGHBOUR");
+
+ indentation(indent + COL);
+ if (szip_options_mask & H5_SZIP_LSB_OPTION_MASK)
+ printf("BYTE_ORDER %s\n", "LSB");
+ else if (szip_options_mask & H5_SZIP_MSB_OPTION_MASK)
+ printf("BYTE_ORDER %s\n", "MSB");
+
+ indentation(indent + COL);
+ if (szip_options_mask & H5_SZIP_RAW_OPTION_MASK)
+ printf("HEADER %s\n", "RAW");
+
+ /*end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
+ }
+ break;
+ case H5Z_FILTER_NBIT:
+ indentation(indent + COL);
+ printf("%s\n", NBIT);
+ break;
+ case H5Z_FILTER_SCALEOFFSET:
+ indentation(indent + COL);
+ printf("%s %s %s %d %s\n", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END);
+ break;
+ default:
+ indentation(indent + COL);
+ if (H5Zfilter_avail(filtn))
+ printf("%s %s\n", "USER_REGISTERED_FILTER", BEGIN);
+ else
+ printf("%s %s\n", "UNKNOWN_FILTER", BEGIN);
+ /*start indent */
+ indent += COL;
+ indentation(indent + COL);
+ printf("FILTER_ID %d\n", filtn);
+ if (f_name[0]!='\0') {
+ indentation(indent + COL);
+ printf("COMMENT %s\n", f_name);
+ }
+ if (cd_nelmts) {
+ indentation(indent + COL);
+ printf("%s %s ","PARAMS", BEGIN);
+ for (j=0; j<cd_nelmts; j++)
+ printf("%d ", cd_values[j]);
+ printf("%s\n", END);
+ }
+ break;
+ }/*switch*/
+ } /*i*/
+ }/*nfilters*/
+ else {
+ indentation(indent + COL);
+ printf("NONE\n");
+ }
+ indent -= COL;
indentation(indent + COL);
- printf("%s %s %s %d %s\n", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END);
- break;
- case H5Z_FILTER_SHUFFLE:
+ printf("%s\n",END);
+
+ /*-------------------------------------------------------------------------
+ * FILLVALUE
+ *-------------------------------------------------------------------------
+ */
indentation(indent + COL);
- printf("%s\n", SHUFFLE);
- break;
- case H5Z_FILTER_FLETCHER32:
+ printf("%s %s\n", FILLVALUE, BEGIN);
+ /*start indent */
+ indent += COL;
indentation(indent + COL);
- printf("%s\n", FLETCHER32);
- break;
- case H5Z_FILTER_SZIP:
- {
- szip_options_mask=cd_values[0];;
- szip_pixels_per_block=cd_values[1];
-
- indentation(indent + COL);
- printf("%s %s\n",SZIP, BEGIN);
-
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- printf("PIXELS_PER_BLOCK %d\n", szip_pixels_per_block);
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_CHIP_OPTION_MASK)
- printf("MODE %s\n", "HARDWARE");
- else if (szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK)
- printf("MODE %s\n", "K13");
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_EC_OPTION_MASK)
- printf("CODING %s\n", "ENTROPY");
- else if (szip_options_mask & H5_SZIP_NN_OPTION_MASK)
- printf("CODING %s\n", "NEAREST NEIGHBOUR");
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_LSB_OPTION_MASK)
- printf("BYTE_ORDER %s\n", "LSB");
- else if (szip_options_mask & H5_SZIP_MSB_OPTION_MASK)
- printf("BYTE_ORDER %s\n", "MSB");
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_RAW_OPTION_MASK)
- printf("HEADER %s\n", "RAW");
-
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
+ printf("FILL_TIME ");
+ H5Pget_fill_time(dcpl_id, &ft);
+ switch ( ft ) {
+ case H5D_FILL_TIME_ALLOC:
+ printf("%s", "H5D_FILL_TIME_ALLOC\n");
+ break;
+ case H5D_FILL_TIME_NEVER:
+ printf("%s", "H5D_FILL_TIME_NEVER\n");
+ break;
+ case H5D_FILL_TIME_IFSET:
+ printf("%s", "H5D_FILL_TIME_IFSET\n");
+ break;
+ default:
+ assert(0);
+ break;
}
- break;
- case H5Z_FILTER_NBIT:
indentation(indent + COL);
- printf("%s\n", NBIT);
- break;
- case H5Z_FILTER_SCALEOFFSET:
+ printf("%s ", "VALUE ");
+ H5Pfill_value_defined(dcpl_id, &fvstatus);
+ if (fvstatus == H5D_FILL_VALUE_UNDEFINED)
+ printf("%s\n", "H5D_FILL_VALUE_UNDEFINED");
+ else
+ dump_fill_value(dcpl_id,type_id,obj_id);
+ /* end indent */
+ indent -= COL;
indentation(indent + COL);
- printf("%s %s %s %d %s\n", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END);
- break;
- default:
+ printf("\n");
indentation(indent + COL);
- if (H5Zfilter_avail(filtn))
- printf("%s %s\n", "USER_REGISTERED_FILTER", BEGIN);
- else
- printf("%s %s\n", "UNKNOWN_FILTER", BEGIN);
+ printf("%s\n",END);
+
+ /*-------------------------------------------------------------------------
+ * ALLOCATION_TIME
+ *-------------------------------------------------------------------------
+ */
+ indentation(indent + COL);
+ printf("ALLOCATION_TIME %s\n",BEGIN);
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("FILTER_ID %d\n", filtn);
- if (f_name[0]!='\0') {
- indentation(indent + COL);
- printf("COMMENT %s\n", f_name);
- }
- if (cd_nelmts) {
- indentation(indent + COL);
- printf("%s %s ","PARAMS", BEGIN);
- for (j=0; j<cd_nelmts; j++) {
- printf("%d ", cd_values[j]);
- }
- printf("%s\n", END);
+ H5Pget_alloc_time(dcpl_id, &at);
+ switch (at) {
+ case H5D_ALLOC_TIME_EARLY:
+ printf("%s", "H5D_ALLOC_TIME_EARLY\n");
+ break;
+ case H5D_ALLOC_TIME_INCR:
+ printf("%s", "H5D_ALLOC_TIME_INCR\n");
+ break;
+ case H5D_ALLOC_TIME_LATE:
+ printf("%s", "H5D_ALLOC_TIME_LATE\n");
+ break;
+ default:
+ assert(0);
+ break;
}
- break;
- }/*switch*/
- } /*i*/
- }/*nfilters*/
- else
- {
- indentation(indent + COL);
- printf("NONE\n");
- }
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
-
-/*-------------------------------------------------------------------------
- * FILLVALUE
- *-------------------------------------------------------------------------
- */
- indentation(indent + COL);
- printf("%s %s\n", FILLVALUE, BEGIN);
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- printf("FILL_TIME ");
- H5Pget_fill_time(dcpl_id, &ft);
- switch ( ft )
- {
- case H5D_FILL_TIME_ALLOC:
- printf("%s", "H5D_FILL_TIME_ALLOC\n");
- break;
- case H5D_FILL_TIME_NEVER:
- printf("%s", "H5D_FILL_TIME_NEVER\n");
- break;
- case H5D_FILL_TIME_IFSET:
- printf("%s", "H5D_FILL_TIME_IFSET\n");
- break;
- default:
- assert(0);
- break;
- }
- indentation(indent + COL);
- printf("%s ", "VALUE ");
- H5Pfill_value_defined(dcpl_id, &fvstatus);
- if (fvstatus == H5D_FILL_VALUE_UNDEFINED)
- {
- printf("%s\n", "H5D_FILL_VALUE_UNDEFINED");
- }
- else
- {
- dump_fill_value(dcpl_id,type_id,obj_id);
- }
- /* end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("\n");
- indentation(indent + COL);
- printf("%s\n",END);
-
-/*-------------------------------------------------------------------------
- * ALLOCATION_TIME
- *-------------------------------------------------------------------------
- */
- indentation(indent + COL);
- printf("ALLOCATION_TIME %s\n",BEGIN);
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- H5Pget_alloc_time(dcpl_id, &at);
- switch (at)
- {
- case H5D_ALLOC_TIME_EARLY:
- printf("%s", "H5D_ALLOC_TIME_EARLY\n");
- break;
- case H5D_ALLOC_TIME_INCR:
- printf("%s", "H5D_ALLOC_TIME_INCR\n");
- break;
- case H5D_ALLOC_TIME_LATE:
- printf("%s", "H5D_ALLOC_TIME_LATE\n");
- break;
- default:
- assert(0);
- break;
- }
- /* end indent */
- indent -= COL;
- indentation(indent + COL);
- printf("%s\n",END);
+ /* end indent */
+ indent -= COL;
+ indentation(indent + COL);
+ printf("%s\n",END);
}
/*-------------------------------------------------------------------------
@@ -2464,103 +2462,87 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
static void
dump_fcpl(hid_t fid)
{
- hid_t fcpl; /* file creation property list ID */
- hid_t fapl; /* file access property list ID */
- hsize_t userblock; /* userblock size retrieved from FCPL */
- size_t off_size; /* size of offsets in the file */
- size_t len_size; /* size of lengths in the file */
- unsigned super; /* superblock version # */
- unsigned freelist; /* free list version # */
- unsigned stab; /* symbol table entry version # */
- unsigned shhdr; /* shared object header version # */
- hid_t fdriver; /* file driver */
- char dname[15]; /* buffer to store driver name */
- unsigned sym_lk; /* symbol table B-tree leaf 'K' value */
- unsigned sym_ik; /* symbol table B-tree internal 'K' value */
- unsigned istore_ik; /* indexed storage B-tree internal 'K' value */
-
- fcpl=H5Fget_create_plist(fid);
- H5Pget_version(fcpl, &super, &freelist, &stab, &shhdr);
- H5Pget_userblock(fcpl,&userblock);
- H5Pget_sizes(fcpl,&off_size,&len_size);
- H5Pget_sym_k(fcpl,&sym_ik,&sym_lk);
- H5Pget_istore_k(fcpl,&istore_ik);
- H5Pclose(fcpl);
- fapl=h5_fileaccess();
- fdriver=H5Pget_driver(fapl);
- H5Pclose(fapl);
-
-/*-------------------------------------------------------------------------
- * SUPER_BLOCK
- *-------------------------------------------------------------------------
- */
- printf("%s %s\n",SUPER_BLOCK, BEGIN);
- indentation(indent + COL);
- printf("%s %u\n","SUPERBLOCK_VERSION", super);
- indentation(indent + COL);
- printf("%s %u\n","FREELIST_VERSION", freelist);
- indentation(indent + COL);
- printf("%s %u\n","SYMBOLTABLE_VERSION", stab);
- indentation(indent + COL);
- printf("%s %u\n","OBJECTHEADER_VERSION", shhdr);
- indentation(indent + COL);
- HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long_long)off_size);
- indentation(indent + COL);
- HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long_long)len_size);
- indentation(indent + COL);
- printf("%s %u\n","BTREE_RANK", sym_ik);
- indentation(indent + COL);
- printf("%s %d\n","BTREE_LEAF", sym_lk);
-
- if (H5FD_CORE==fdriver)
- {
- strcpy(dname,"H5FD_CORE");
- }
- else if (H5FD_FAMILY==fdriver)
- {
- strcpy(dname,"H5FD_FAMILY");
- }
- else if (H5FD_LOG==fdriver)
- {
- strcpy(dname,"H5FD_LOG");
- }
- else if (H5FD_MPIO==fdriver)
- {
- strcpy(dname,"H5FD_MPIO");
- }
- else if (H5FD_MULTI==fdriver)
- {
- strcpy(dname,"H5FD_MULTI");
- }
- else if (H5FD_SEC2==fdriver)
- {
- strcpy(dname,"H5FD_SEC2");
- }
- else if (H5FD_STDIO==fdriver)
- {
- strcpy(dname,"H5FD_STDIO");
- }
+ hid_t fcpl; /* file creation property list ID */
+ hid_t fapl; /* file access property list ID */
+ hsize_t userblock; /* userblock size retrieved from FCPL */
+ size_t off_size; /* size of offsets in the file */
+ size_t len_size; /* size of lengths in the file */
+ unsigned super; /* superblock version # */
+ unsigned freelist; /* free list version # */
+ unsigned stab; /* symbol table entry version # */
+ unsigned shhdr; /* shared object header version # */
+ hid_t fdriver; /* file driver */
+ char dname[15]; /* buffer to store driver name */
+ unsigned sym_lk; /* symbol table B-tree leaf 'K' value */
+ unsigned sym_ik; /* symbol table B-tree internal 'K' value */
+ unsigned istore_ik; /* indexed storage B-tree internal 'K' value */
+
+ fcpl=H5Fget_create_plist(fid);
+ H5Pget_version(fcpl, &super, &freelist, &stab, &shhdr);
+ H5Pget_userblock(fcpl,&userblock);
+ H5Pget_sizes(fcpl,&off_size,&len_size);
+ H5Pget_sym_k(fcpl,&sym_ik,&sym_lk);
+ H5Pget_istore_k(fcpl,&istore_ik);
+ H5Pclose(fcpl);
+ fapl=h5_fileaccess();
+ fdriver=H5Pget_driver(fapl);
+ H5Pclose(fapl);
+
+ /*-------------------------------------------------------------------------
+ * SUPER_BLOCK
+ *-------------------------------------------------------------------------
+ */
+ printf("%s %s\n",SUPER_BLOCK, BEGIN);
+ indentation(indent + COL);
+ printf("%s %u\n","SUPERBLOCK_VERSION", super);
+ indentation(indent + COL);
+ printf("%s %u\n","FREELIST_VERSION", freelist);
+ indentation(indent + COL);
+ printf("%s %u\n","SYMBOLTABLE_VERSION", stab);
+ indentation(indent + COL);
+ printf("%s %u\n","OBJECTHEADER_VERSION", shhdr);
+ indentation(indent + COL);
+ HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long_long)off_size);
+ indentation(indent + COL);
+ HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long_long)len_size);
+ indentation(indent + COL);
+ printf("%s %u\n","BTREE_RANK", sym_ik);
+ indentation(indent + COL);
+ printf("%s %d\n","BTREE_LEAF", sym_lk);
+
+ if (H5FD_CORE==fdriver)
+ HDstrcpy(dname,"H5FD_CORE");
+ else if (H5FD_FAMILY==fdriver)
+ HDstrcpy(dname,"H5FD_FAMILY");
+ else if (H5FD_LOG==fdriver)
+ HDstrcpy(dname,"H5FD_LOG");
+ else if (H5FD_MPIO==fdriver)
+ HDstrcpy(dname,"H5FD_MPIO");
+ else if (H5FD_MULTI==fdriver)
+ HDstrcpy(dname,"H5FD_MULTI");
+ else if (H5FD_SEC2==fdriver)
+ HDstrcpy(dname,"H5FD_SEC2");
+ else if (H5FD_STDIO==fdriver)
+ HDstrcpy(dname,"H5FD_STDIO");
#ifdef H5_HAVE_STREAM
- else if (H5FD_STREAM==fdriver)
- {
- strcpy(dname,"H5FD_STREAM");
- }
+ else if (H5FD_STREAM==fdriver)
+ HDstrcpy(dname,"H5FD_STREAM");
#endif
- indentation(indent + COL);
- printf("%s %s\n","FILE_DRIVER", dname);
- indentation(indent + COL);
- printf("%s %u\n","ISTORE_K", istore_ik);
- printf("%s\n",END);
-
-/*-------------------------------------------------------------------------
- * USER_BLOCK
- *-------------------------------------------------------------------------
- */
- printf("USER_BLOCK %s\n",BEGIN);
- indentation(indent + COL);
- HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock);
- printf("%s\n",END);
+ indentation(indent + COL);
+ printf("%s %s\n","FILE_DRIVER", dname);
+ indentation(indent + COL);
+ printf("%s %u\n","ISTORE_K", istore_ik);
+ printf("%s\n",END);
+
+ /*-------------------------------------------------------------------------
+ * USER_BLOCK
+ *-------------------------------------------------------------------------
+ */
+ printf("USER_BLOCK %s\n",BEGIN);
+ indentation(indent + COL);
+ HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock);
+ printf("%s\n",END);
}
/*-------------------------------------------------------------------------
@@ -2916,15 +2898,15 @@ handle_groups(hid_t fid, char *group, void UNUSED * data)
dump_header_format->groupblockend);
d_status = EXIT_FAILURE;
} else {
- size_t new_len = strlen(group) + 1;
+ size_t new_len = HDstrlen(group) + 1;
if (prefix_len <= new_len) {
prefix_len = new_len;
- prefix = realloc(prefix, prefix_len);
+ prefix = HDrealloc(prefix, prefix_len);
}
H5Gget_objinfo(gid, ".", TRUE, &statbuf);
- strcpy(prefix, group);
+ HDstrcpy(prefix, group);
dump_group(gid, group);
if (H5Gclose(gid) < 0)
@@ -2952,15 +2934,10 @@ handle_links(hid_t fid, char *links, void UNUSED * data)
H5G_stat_t statbuf;
if (H5Gget_objinfo(fid, links, FALSE, &statbuf) < 0) {
- begin_obj(dump_header_format->softlinkbegin, links,
- dump_header_format->softlinkblockbegin);
- indentation(COL);
error_msg(progname, "unable to get obj info from \"%s\"\n", links);
- end_obj(dump_header_format->softlinkend,
- dump_header_format->softlinkblockend);
d_status = EXIT_FAILURE;
} else if (statbuf.type == H5G_LINK) {
- char *buf = malloc(statbuf.u.slink.linklen);
+ char *buf = HDmalloc(statbuf.u.slink.linklen);
begin_obj(dump_header_format->softlinkbegin, links,
dump_header_format->softlinkblockbegin);
@@ -2976,14 +2953,10 @@ handle_links(hid_t fid, char *links, void UNUSED * data)
end_obj(dump_header_format->softlinkend,
dump_header_format->softlinkblockend);
- free(buf);
+
+ HDfree(buf);
} else {
- begin_obj(dump_header_format->softlinkbegin, links,
- dump_header_format->softlinkblockbegin);
- indentation(COL);
error_msg(progname, "\"%s\" is not a link\n", links);
- end_obj(dump_header_format->softlinkend,
- dump_header_format->softlinkblockend);
d_status = EXIT_FAILURE;
}
}
@@ -3453,13 +3426,13 @@ main(int argc, const char *argv[])
/* find all objects that might be targets of a refernce */
init_ref_path_table(fid); /* Insert the root group into the ref. path table */
- H5Giterate(fid, "/", NULL, fill_ref_path_table, (void *)"");
+ H5Giterate(fid, (const char *)"/", NULL, fill_ref_path_table, (void *)"");
if (doxml) {
/* initialize XML */
/* reset prefix! */
- strcpy(prefix, "");
+ HDstrcpy(prefix, "");
/* make sure the URI is initialized to something */
if (xml_dtd_uri == NULL) {
@@ -3584,7 +3557,7 @@ done:
free_table(dset_table);
free_table(type_table);
- free(prefix);
+ HDfree(prefix);
/* To Do: clean up XML table */
@@ -4485,7 +4458,7 @@ xml_dump_dataspace(hid_t space)
static void
xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNUSED pindex)
{
- h5dump_t *outputformat = &xml_dataformat;
+ h5tool_format_t *outputformat = &xml_dataformat;
int status = -1;
void *buf;
hid_t space, type, p_type;
@@ -4723,14 +4696,14 @@ xml_dump_named_datatype(hid_t type, const char *name)
char *t_prefix;
char *t_name;
- tmp = malloc(strlen(prefix) + strlen(name) + 2);
- strcpy(tmp, prefix);
- strcat(tmp, "/");
- strcat(tmp, name);
+ tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ HDstrcat(tmp, "/");
+ HDstrcat(tmp, name);
indentation(indent);
- /*char **/ dtxid = malloc(100);
- /*char **/ parentxid = malloc(100);
+ /*char **/ dtxid = HDmalloc(100);
+ /*char **/ parentxid = HDmalloc(100);
/*char **/t_tmp = xml_escape_the_name(tmp);
/*char **/t_prefix = xml_escape_the_name(prefix);
/*char **/t_name = xml_escape_the_name(name);
@@ -4749,20 +4722,20 @@ xml_dump_named_datatype(hid_t type, const char *name)
"Parents=\"%s\" H5ParentPaths=\"%s\">\n",
xmlnsprefix,
name, dtxid,
- parentxid,(strcmp(prefix, "") ? t_prefix : "/"));
+ parentxid,(HDstrcmp(prefix, "") ? t_prefix : "/"));
} else {
printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
"H5Path=\"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",
xmlnsprefix,
t_name, dtxid,
- t_tmp, parentxid, (strcmp(prefix, "") ? t_prefix : "/"));
+ t_tmp, parentxid, (HDstrcmp(prefix, "") ? t_prefix : "/"));
}
- free(dtxid);
- free(parentxid);
- free(t_tmp);
- free(t_prefix);
- free(t_name);
- free(tmp);
+ HDfree(dtxid);
+ HDfree(parentxid);
+ HDfree(t_tmp);
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(tmp);
indent += COL;
indentation(indent);
@@ -4807,17 +4780,17 @@ xml_dump_group(hid_t gid, const char *name)
char *t_objname;
char *par_name;
- if (strcmp(name, "/") == 0) {
+ if (HDstrcmp(name, "/") == 0) {
isRoot = 1;
- tmp = malloc(2);
- strcpy(tmp, "/");
+ tmp = HDmalloc(2);
+ HDstrcpy(tmp, "/");
} else {
- tmp = malloc(strlen(prefix) + strlen(name) + 2);
- strcpy(tmp, prefix);
+ tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
par = HDstrdup(tmp);
- cp = strrchr(par, '/');
+ cp = HDstrrchr(par, '/');
if (cp != NULL) {
- if ((cp == par) && strlen(par) > 1) {
+ if ((cp == par) && HDstrlen(par) > 1) {
*(cp + 1) = '\0';
} else {
*cp = '\0';
@@ -5212,59 +5185,6 @@ xml_print_strs(hid_t did, int source)
}
/*-------------------------------------------------------------------------
- * Function: check_compression
- *
- * Purpose: private function to check for compression and
- * put a comment in the XML. (Not fully implemented.)
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-#ifdef LATER
-static void
-check_compression(hid_t dcpl)
-{
- int nfilt;
- int i;
- H5Z_filter_t filter;
- char namebuf[20];
- size_t cd_nelmts = 1;
- unsigned int cd_values;
- unsigned int flags;
-/* not used yet: will need to do somehting more elaborate to handle future
- * compression methods.
- char *t1 = "H5Z_FILTER_DEFLATE";
-*/
-
- nfilt = H5Pget_nfilters(dcpl);
- if (nfilt <= 0)
- return;
- for (i = 0; i < nfilt; i++) {
-#ifdef H5_WANT_H5_V1_6_COMPAT
- filter = H5Pget_filter(dcpl, i, &flags,
- (size_t *) &cd_nelmts,
- &cd_values, 20, namebuf);
-#else
- filter = H5Pget_filter(dcpl, i, &flags,
- (size_t *) &cd_nelmts,
- &cd_values, 20, namebuf, NULL);
-#endif /* H5_WANT_H5_V1_6_COMPAT */
- if (filter == H5Z_FILTER_DEFLATE) {
- indentation(indent + COL);
- printf("<%sCompression />\n",xmlnsprefix);
- indentation(indent + COL);
- printf("<!-- Compression parameter %d -->\n", cd_values);
- }
- }
-}
-#endif /* LATER */
-
-/*-------------------------------------------------------------------------
* Function: check_filters
*
* Purpose: private function to check for the filters and
@@ -5512,13 +5432,13 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
hsize_t tempi;
char *tmp;
char *t_name, *t_tmp, *t_prefix;
- char *rstr = malloc(100);
- char *pstr = malloc(100);
+ char *rstr = HDmalloc(100);
+ char *pstr = HDmalloc(100);
- tmp = malloc(strlen(prefix) + strlen(name) + 2);
- strcpy(tmp, prefix);
- strcat(tmp, "/");
- strcat(tmp, name);
+ tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ HDstrcat(tmp, "/");
+ HDstrcat(tmp, name);
indentation(indent);
t_name = xml_escape_the_name(name);
@@ -5530,12 +5450,12 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s\" H5Path= \"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",xmlnsprefix,
t_name, rstr, t_tmp, pstr, strcmp(prefix, "") ? t_prefix : "/");
- free(t_name);
- free(t_tmp);
- free(t_prefix);
- free(rstr);
- free(pstr);
- free(tmp);
+ HDfree(t_name);
+ HDfree(t_tmp);
+ HDfree(t_prefix);
+ HDfree(rstr);
+ HDfree(pstr);
+ HDfree(tmp);
dcpl = H5Dget_create_plist(did);
type = H5Dget_type(did);
@@ -5994,7 +5914,32 @@ h5_fileaccess(void)
static void
init_prefix(char **prfx, size_t prfx_len)
{
- assert(prfx_len > 0);
+ HDassert(prfx_len > 0);
*prfx = HDcalloc(prfx_len, 1);
}
+
+/*-------------------------------------------------------------------------
+ * Function: add_prefix
+ *
+ * Purpose: Add object to prefix
+ *
+ * Return: void
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+add_prefix(char **prfx, size_t *prfx_len, const char *name)
+{
+ size_t new_len = HDstrlen(*prfx) + HDstrlen(name) + 2;
+
+ /* Check if we need more space */
+ if(*prfx_len <= new_len) {
+ *prfx_len = new_len + 1;
+ *prfx = HDrealloc(*prfx, *prfx_len);
+ }
+
+ /* Append object name to prefix */
+ HDstrcat(HDstrcat(*prfx, "/"), name);
+} /* end add_prefix */
+
diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h
index 96e7d71..dbc5de9 100644
--- a/tools/h5dump/h5dump.h
+++ b/tools/h5dump/h5dump.h
@@ -18,4 +18,133 @@
#define H5DUMP_MAX_RANK H5S_MAX_RANK
+#define ATTRIBUTE_DATA 0
+#define DATASET_DATA 1
+#define ENUM_DATA 2
+#define COL 3
+
+/* Strings for output */
+#define ATTRIBUTE "ATTRIBUTE"
+#define BLOCK "BLOCK"
+#define SUPER_BLOCK "SUPER_BLOCK"
+#define COMPRESSION "COMPRESSION"
+#define CONCATENATOR "//"
+#define COMPLEX "COMPLEX"
+#define COUNT "COUNT"
+#define CSET "CSET"
+#define CTYPE "CTYPE"
+#define DATA "DATA"
+#define DATASPACE "DATASPACE"
+#define EXTERNAL "EXTERNAL"
+#define FILENO "FILENO"
+#define HARDLINK "HARDLINK"
+#define NLINK "NLINK"
+#define OBJID "OBJECTID"
+#define OBJNO "OBJNO"
+#define S_SCALAR "SCALAR"
+#define S_SIMPLE "SIMPLE"
+#define S_NULL "NULL"
+#define SOFTLINK "SOFTLINK"
+#define STORAGELAYOUT "STORAGELAYOUT"
+#define START "START"
+#define STRIDE "STRIDE"
+#define STRSIZE "STRSIZE"
+#define STRPAD "STRPAD"
+#define SUBSET "SUBSET"
+#define FILTERS "FILTERS"
+#define DEFLATE "COMPRESSION DEFLATE"
+#define DEFLATE_LEVEL "LEVEL"
+#define SHUFFLE "PREPROCESSING SHUFFLE"
+#define FLETCHER32 "CHECKSUM FLETCHER32"
+#define SZIP "COMPRESSION SZIP"
+#define NBIT "COMPRESSION NBIT"
+#define SCALEOFFSET "COMPRESSION SCALEOFFSET"
+#define SCALEOFFSET_MINBIT "MIN BITS"
+#define STORAGE_LAYOUT "STORAGE_LAYOUT"
+#define CONTIGUOUS "CONTIGUOUS"
+#define COMPACT "COMPACT"
+#define CHUNKED "CHUNKED"
+#define EXTERNAL_FILE "EXTERNAL_FILE"
+#define FILLVALUE "FILLVALUE"
+#define FILE_CONTENTS "FILE_CONTENTS"
+
+#define BEGIN "{"
+#define END "}"
+
+typedef struct h5dump_header_t {
+ const char *name;
+ const char *filebegin;
+ const char *fileend;
+ const char *bootblockbegin;
+ const char *bootblockend;
+ const char *groupbegin;
+ const char *groupend;
+ const char *datasetbegin;
+ const char *datasetend;
+ const char *attributebegin;
+ const char *attributeend;
+ const char *datatypebegin;
+ const char *datatypeend;
+ const char *dataspacebegin;
+ const char *dataspaceend;
+ const char *databegin;
+ const char *dataend;
+ const char *softlinkbegin;
+ const char *softlinkend;
+ const char *subsettingbegin;
+ const char *subsettingend;
+ const char *startbegin;
+ const char *startend;
+ const char *stridebegin;
+ const char *strideend;
+ const char *countbegin;
+ const char *countend;
+ const char *blockbegin;
+ const char *blockend;
+
+ const char *fileblockbegin;
+ const char *fileblockend;
+ const char *bootblockblockbegin;
+ const char *bootblockblockend;
+ const char *groupblockbegin;
+ const char *groupblockend;
+ const char *datasetblockbegin;
+ const char *datasetblockend;
+ const char *attributeblockbegin;
+ const char *attributeblockend;
+ const char *datatypeblockbegin;
+ const char *datatypeblockend;
+ const char *dataspaceblockbegin;
+ const char *dataspaceblockend;
+ const char *datablockbegin;
+ const char *datablockend;
+ const char *softlinkblockbegin;
+ const char *softlinkblockend;
+ const char *strblockbegin;
+ const char *strblockend;
+ const char *enumblockbegin;
+ const char *enumblockend;
+ const char *structblockbegin;
+ const char *structblockend;
+ const char *vlenblockbegin;
+ const char *vlenblockend;
+ const char *subsettingblockbegin;
+ const char *subsettingblockend;
+ const char *startblockbegin;
+ const char *startblockend;
+ const char *strideblockbegin;
+ const char *strideblockend;
+ const char *countblockbegin;
+ const char *countblockend;
+ const char *blockblockbegin;
+ const char *blockblockend;
+
+ const char *dataspacedescriptionbegin;
+ const char *dataspacedescriptionend;
+ const char *dataspacedimbegin;
+ const char *dataspacedimend;
+
+} h5dump_header_t;
+
+
#endif /* !H5DUMP_H__ */
diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c
index 4f1c0f5..8345e5a 100644
--- a/tools/h5dump/h5dumpgentest.c
+++ b/tools/h5dump/h5dumpgentest.c
@@ -4664,7 +4664,7 @@ static void gent_filters(void)
assert(ret>=0);
/* set the scaleoffset filter */
- ret=H5Pset_scaleoffset(dcpl,H5Z_SO_INT,H5Tget_size(H5T_NATIVE_INT));
+ ret=H5Pset_scaleoffset(dcpl,H5Z_SO_INT,(int)H5Tget_size(H5T_NATIVE_INT));
assert(ret>=0);
ret=make_dset(fid,"scaleoffset",sid,H5T_NATIVE_INT,dcpl,buf1);
generated by cgit v0.12 at 2024-11-06 12:34:39 (GMT)