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-rw-r--r--tools/h5dump/CMakeLists.txt6
-rw-r--r--tools/h5dump/h5dump.c6
-rw-r--r--tools/h5dump/h5dumpgentest.c208
-rw-r--r--tools/h5dump/testh5dump.sh.in2
4 files changed, 219 insertions, 3 deletions
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt
index 6f4ea22..2a74419 100644
--- a/tools/h5dump/CMakeLists.txt
+++ b/tools/h5dump/CMakeLists.txt
@@ -38,6 +38,7 @@ IF (BUILD_TESTING)
# Copy all the HDF5 files from the test directory into the source directory
# --------------------------------------------------------------------
SET (HDF5_REFERENCE_FILES
+ packedbits.ddl
tall-1.ddl
tall-2.ddl
tall-2A.ddl
@@ -217,6 +218,7 @@ IF (BUILD_TESTING)
tbin3.ddl
tbin4.ddl
out3.h5import
+ packedbits.h5
taindices.h5
tall.h5
tarray1.h5
@@ -476,6 +478,8 @@ IF (BUILD_TESTING)
NAME H5DUMP-clearall-objects
COMMAND ${CMAKE_COMMAND}
-E remove
+ packedbits.out
+ packedbits.out.err
tall-1.out
tall-1.out.err
tall-2.out
@@ -699,6 +703,8 @@ IF (BUILD_TESTING)
ADD_TEST (NAME H5DUMP-thlink COMMAND h5dump thlink.h5)
ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
+ # test for signed/unsigned datasets
+ ADD_H5_TEST (packedbits 0 packedbits.h5)
# test for displaying groups
ADD_H5_TEST (tgroup-1 0 tgroup.h5)
# test for displaying the selected groups
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index 261fe15..33750f3 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -132,7 +132,7 @@ static h5tool_format_t dataformat = {
"", /*fmt_raw */
"%d", /*fmt_int */
"%u", /*fmt_uint */
- "%d", /*fmt_schar */
+ "%hhd", /*fmt_schar */
"%u", /*fmt_uchar */
"%d", /*fmt_short */
"%u", /*fmt_ushort */
@@ -216,7 +216,7 @@ static h5tool_format_t xml_dataformat = {
"", /*fmt_raw */
"%d", /*fmt_int */
"%u", /*fmt_uint */
- "%d", /*fmt_schar */
+ "%hhd", /*fmt_schar */
"%u", /*fmt_uchar */
"%d", /*fmt_short */
"%u", /*fmt_ushort */
@@ -3988,7 +3988,7 @@ parse_start:
leave(EXIT_SUCCESS);
break;
case 'w':
- nCols = atoi(opt_arg);
+ nCols = HDatoi(opt_arg);
last_was_dset = FALSE;
break;
case 'a':
diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c
index 95caa5e..7701651 100644
--- a/tools/h5dump/h5dumpgentest.c
+++ b/tools/h5dump/h5dumpgentest.c
@@ -95,6 +95,7 @@
/*#define FILE64 "tarray8.h5"*/
#define FILE65 "tattrreg.h5"
#define FILE66 "file_space.h5"
+#define FILE67 "packedbits.h5"
@@ -253,6 +254,22 @@ typedef struct s1_t {
#define STRATEGY H5F_FILE_SPACE_AGGR_VFD /* File space handling strategy */
#define THRESHOLD10 10 /* Free space section threshold */
+/* "FILE67" macros */
+#define F67_XDIM 8
+#define F67_DATASETU08 "DU08BITS"
+#define F67_DATASETS08 "DS08BITS"
+#define F67_YDIM8 8
+#define F67_DATASETU16 "DU16BITS"
+#define F67_DATASETS16 "DS16BITS"
+#define F67_YDIM16 16
+#define F67_DATASETU32 "DU32BITS"
+#define F67_DATASETS32 "DS32BITS"
+#define F67_YDIM32 32
+#define F67_DATASETU64 "DU64BITS"
+#define F67_DATASETS64 "DS64BITS"
+#define F67_YDIM64 64
+#define F67_DUMMYDBL "DummyDBL"
+
static void
gent_group(void)
{
@@ -6775,6 +6792,196 @@ gent_fs_strategy_threshold(void)
}
/*-------------------------------------------------------------------------
+ * Function: gent_packedbits
+ *
+ * Purpose: Generate a file to be used in the h5dump packed bits tests.
+ * Three datasets of 1, 2 and 4 bytes of unsigned int types are created.
+ * Three more datasets of 1, 2 and 4 bytes of signed int types are created.
+ * Fill them with raw data such that no bit will be all zero in a dataset.
+ * A dummy dataset of double type is created for failure test.
+ * Created: Albert Cheng, 2010/5/10.
+ * Modified: Allen Byrne, 2011/1/5 Use file to test Signed/Unsigned datatypes
+ *-------------------------------------------------------------------------
+ */
+static void
+gent_packedbits(void)
+{
+ hid_t fid, dataset, space;
+ hsize_t dims[2];
+ uint8_t dsetu8[F67_XDIM][F67_YDIM8], valu8bits;
+ uint16_t dsetu16[F67_XDIM][F67_YDIM16], valu16bits;
+ uint32_t dsetu32[F67_XDIM][F67_YDIM32], valu32bits;
+ uint64_t dsetu64[F67_XDIM][F67_YDIM64], valu64bits;
+ int8_t dset8[F67_XDIM][F67_YDIM8], val8bits;
+ int16_t dset16[F67_XDIM][F67_YDIM16], val16bits;
+ int32_t dset32[F67_XDIM][F67_YDIM32], val32bits;
+ int64_t dset64[F67_XDIM][F67_YDIM64], val64bits;
+ double dsetdbl[F67_XDIM][F67_YDIM8];
+ unsigned int i, j;
+
+ fid = H5Fcreate(FILE66, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Dataset of 8 bits unsigned int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM8;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETU08, H5T_STD_U8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ valu8bits = (uint8_t) ~0u; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dsetu8[i][0] = valu8bits;
+ for(j = 1; j < dims[1]; j++) {
+ dsetu8[i][j] = dsetu8[i][j-1] << 1;
+ }
+ valu8bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_UINT8, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu8);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Dataset of 16 bits unsigned int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM16;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETU16, H5T_STD_U16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ valu16bits = (uint16_t) ~0u; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dsetu16[i][0] = valu16bits;
+ for(j = 1; j < dims[1]; j++) {
+ dsetu16[i][j] = dsetu16[i][j-1] << 1;
+ }
+ valu16bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_UINT16, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu16);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Dataset of 32 bits unsigned int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM32;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETU32, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ valu32bits = (uint32_t) ~0u; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dsetu32[i][0] = valu32bits;
+ for(j = 1; j < dims[1]; j++) {
+ dsetu32[i][j] = dsetu32[i][j-1] << 1;
+ }
+ valu32bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_UINT32, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu32);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Dataset of 64 bits unsigned int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM64;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETU64, H5T_STD_U64LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ valu64bits = (uint64_t) ~0Lu; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dsetu64[i][0] = valu64bits;
+ for(j = 1; j < dims[1]; j++) {
+ dsetu64[i][j] = dsetu64[i][j-1] << 1;
+ }
+ valu64bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_UINT64, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu64);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Dataset of 8 bits signed int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM8;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETS08, H5T_STD_I8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ val8bits = (int8_t) ~0; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dset8[i][0] = val8bits;
+ for(j = 1; j < dims[1]; j++) {
+ dset8[i][j] = dset8[i][j-1] << 1;
+ }
+ val8bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_INT8, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset8);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Dataset of 16 bits signed int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM16;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETS16, H5T_STD_I16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ val16bits = (int16_t) ~0; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dset16[i][0] = val16bits;
+ for(j = 1; j < dims[1]; j++) {
+ dset16[i][j] = dset16[i][j-1] << 1;
+ }
+ val16bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_INT16, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset16);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Dataset of 32 bits signed int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM32;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETS32, H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ val32bits = (int32_t) ~0; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dset32[i][0] = val32bits;
+ for(j = 1; j < dims[1]; j++) {
+ dset32[i][j] = dset32[i][j-1] << 1;
+ }
+ val32bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_INT32, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset32);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Dataset of 64 bits signed int */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM64;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DATASETS64, H5T_STD_I64LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ val64bits = (int64_t) ~0L; /* all 1s */
+ for(i = 0; i < dims[0]; i++){
+ dset64[i][0] = val64bits;
+ for(j = 1; j < dims[1]; j++) {
+ dset64[i][j] = dset64[i][j-1] << 1;
+ }
+ val64bits <<= 1;
+ }
+
+ H5Dwrite(dataset, H5T_NATIVE_INT64, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset64);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ /* Double Dummy set for failure tests */
+ dims[0] = F67_XDIM; dims[1] = F67_YDIM8;
+ space = H5Screate_simple(2, dims, NULL);
+ dataset = H5Dcreate2(fid, F67_DUMMYDBL, H5T_IEEE_F64BE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ for(i = 0; i < dims[0]; i++)
+ for(j = 0; j < dims[1]; j++)
+ dsetdbl[i][j] = 0.0001 * j + i;
+
+ H5Dwrite(dataset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetdbl);
+
+ H5Sclose(space);
+ H5Dclose(dataset);
+ H5Fclose(fid);
+}
+
+/*-------------------------------------------------------------------------
* Function: main
*
*-------------------------------------------------------------------------
@@ -6847,6 +7054,7 @@ int main(void)
gent_fpformat();
gent_extlinks();
gent_fs_strategy_threshold();
+ gent_packedbits();
return 0;
}
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in
index 50ff098..c29297e 100644
--- a/tools/h5dump/testh5dump.sh.in
+++ b/tools/h5dump/testh5dump.sh.in
@@ -270,6 +270,8 @@ IMPORTTEST()
##############################################################################
##############################################################################
+# test for signed/unsigned datasets
+TOOLTEST packedbits.ddl packedbits.h5
# test for displaying groups
TOOLTEST tgroup-1.ddl tgroup.h5
# test for displaying the selected groups
generated by cgit v0.12 at 2024-08-28 11:03:19 (GMT)