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-rw-r--r--tools/h5dumputil.c331
1 files changed, 192 insertions, 139 deletions
diff --git a/tools/h5dumputil.c b/tools/h5dumputil.c
index d033092..4ae9012 100644
--- a/tools/h5dumputil.c
+++ b/tools/h5dumputil.c
@@ -36,69 +36,6 @@
extern int indent;
extern int ischar;
-
-/*-------------------------------------------------------------------------
- * Function: h5dump_prefix
- *
- * Purpose: Prints the prefix to show up at the begining of the line.
- *
- * Return: void
- *
- * Programmer: Robb Matzke
- * Thursday, July 23, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-/*
-static void
-h5dump_prefix(char *s, const h5dump_t *info, hsize_t elmtno, int ndims,
- hsize_t min_idx[], hsize_t max_idx[])
-{
- hsize_t p_prod[8], p_idx[8];
- hsize_t n, i;
- char temp[1024];
-
-*/
- /*
- * Calculate the number of elements represented by a unit change in a
- * certain index position.
- */
-/*
- for (i=ndims-1, p_prod[ndims-1]=1; i>0; --i) {
- p_prod[i-1] = (max_idx[i]-min_idx[i]) * p_prod[i];
- }
-*/
- /*
- * Calculate the index values from the element number.
- */
-/*
- for (i=0, n=elmtno; i<(hsize_t)ndims; i++) {
- p_idx[i] = n / p_prod[i] + min_idx[i];
- n %= p_prod[i];
- }
-*/
- /*
- * Print the index values.
- */
-/*
- *temp = '\0';
- for (i=0; i<(hsize_t)ndims; i++) {
- if (i) strcat(temp, OPT(info->idx_sep, ","));
- sprintf(temp+strlen(temp), OPT(info->idx_n_fmt, "%lu"),
- (unsigned long)p_idx[i]);
- }
-*/
-
- /*
- * Add prefix and suffix to the index.
- */
-/*
- sprintf(s, OPT(info->idx_fmt, "%s: "), temp);
-}
-*/
-
/*-------------------------------------------------------------------------
* Function: h5dump_sprint
*
@@ -121,11 +58,23 @@ h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
char temp[1024], *name;
hid_t memb;
int nmembs, j, k, ndims;
-
+
if (H5Tequal(type, H5T_NATIVE_DOUBLE)) {
sprintf(temp, "%g", *((double*)vp));
} else if (H5Tequal(type, H5T_NATIVE_FLOAT)) {
sprintf(temp, "%g", *((float*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
+ sprintf(temp, "%d", *((short*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
+ sprintf(temp, "%u", *((unsigned short*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_INT)) {
+ sprintf(temp, "%d", *((int*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_UINT)) {
+ sprintf(temp, "%u", *((unsigned*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_LONG)) {
+ sprintf(temp, "%ld", *((long*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
+ sprintf(temp, "%lu", *((unsigned long*)vp));
} else if (H5Tequal(type, H5T_NATIVE_SCHAR) ||
H5Tequal(type, H5T_NATIVE_UCHAR)) {
switch (*((char*)vp)) {
@@ -155,19 +104,7 @@ h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
else sprintf(temp, "\\%03o", *((unsigned char*)vp));
break;
}
- } else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
- sprintf(temp, "%d", *((short*)vp));
- } else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
- sprintf(temp, "%u", *((unsigned short*)vp));
- } else if (H5Tequal(type, H5T_NATIVE_INT)) {
- sprintf(temp, "%d", *((int*)vp));
- } else if (H5Tequal(type, H5T_NATIVE_UINT)) {
- sprintf(temp, "%u", *((unsigned*)vp));
- } else if (H5Tequal(type, H5T_NATIVE_LONG)) {
- sprintf(temp, "%ld", *((long*)vp));
- } else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
- sprintf(temp, "%lu", *((unsigned long*)vp));
- } else if (H5T_COMPOUND==H5Tget_class(type)) {
+ } else if (H5T_COMPOUND==H5Tget_class(type)) {
nmembs = H5Tget_nmembers(type);
strcpy(temp, OPT(info->cmpd_pre, "{"));
for (j=0; j<nmembs; j++) {
@@ -196,6 +133,10 @@ h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
H5Tclose(memb);
}
strcat(temp, OPT(info->cmpd_suf, "}"));
+ } else if (H5T_STRING==H5Tget_class(type)) {
+ for (i = 0; i < H5Tget_size(type); i++)
+ h5dump_sprint(s+i, info, H5T_NATIVE_SCHAR, (char*)vp+i);
+ goto done;
} else {
strcpy(temp, "0x");
n = H5Tget_size(type);
@@ -205,8 +146,12 @@ h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
}
sprintf(s, OPT(info->elmt_fmt, "%s"), temp);
+done:
+ ;
+
}
+
/*-------------------------------------------------------------------------
* Function: h5dump_simple
@@ -226,14 +171,14 @@ h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
*-------------------------------------------------------------------------
*/
static int
-h5dump_simple(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type, int data_flag)
+h5dump_simple(FILE *stream, const h5dump_t *info, hid_t oid, hid_t p_type, int obj_type)
{
hid_t f_space; /*file data space */
int ndims; /*dimensionality */
hsize_t elmtno, i; /*counters */
- int carry; /*counter carry value */
+ /*int carry;*/ /*counter carry value */
hssize_t zero[8]; /*vector of zeros */
- int need_prefix=1; /*indices need printing */
+ /* int need_prefix=1;*/ /*indices need printing */
/* Print info */
hsize_t p_min_idx[8]; /*min selected index */
@@ -241,9 +186,10 @@ h5dump_simple(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type, int
size_t p_type_nbytes; /*size of memory type */
hsize_t p_nelmts; /*total selected elmts */
char p_buf[256]; /*output string */
- size_t p_column=0; /*output column */
+/* size_t p_column=0;*/ /*output column */
size_t p_ncolumns=80; /*default num columns */
- char p_prefix[1024]; /*line prefix string */
+/*
+ char p_prefix[1024]; */ /*line prefix string */
/* Stripmine info */
hsize_t sm_size[8]; /*stripmine size */
@@ -256,19 +202,31 @@ h5dump_simple(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type, int
hssize_t hs_offset[8]; /*starting offset */
hsize_t hs_size[8]; /*size this pass */
hsize_t hs_nelmts; /*elements in request */
-int j, print_once=1;
+int j, row_size, ntokens;
+char out_buf[80], prefix[80];
+
+/*
+ prefix[0] = NULL;
+ out_buf[0] = NULL;
+*/
+ prefix[0] = '\0';
+ out_buf[0] = '\0';
+ if ((indent+col) > 80) indent = 0;
+ for (j=0;j<indent+col;j++) strcat (prefix, " ");
+
+ if (obj_type == DATASET_DATA)
+ f_space = H5Dget_space(oid);
+ else
+ f_space = H5Aget_space(oid);
+
/*
* Check that everything looks okay. The dimensionality must not be too
* great and the dimensionality of the items selected for printing must
* match the dimensionality of the dataset.
*/
- if (data_flag == DATASET_DATA)
- f_space = H5Dget_space(dset);
- else
- f_space = H5Aget_space(dset);
-
ndims = H5Sget_simple_extent_ndims(f_space);
+
if ((size_t)ndims>NELMTS(sm_size)) return -1;
/* Assume entire data space to be printed */
@@ -300,6 +258,40 @@ int j, print_once=1;
/* The stripmine loop */
memset(hs_offset, 0, sizeof hs_offset);
memset(zero, 0, sizeof zero);
+
+ if (ndims == 0) { /* scalar space */
+
+ if (obj_type == DATASET_DATA) {
+ if (H5Dread(oid, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf)<0)
+ return -1;
+ } else {
+ if (H5Aread(oid, p_type, sm_buf) < 0) return -1;
+ }
+
+ if (ischar) {
+
+ for (j = 0; j < (int)p_type_nbytes; j++) {
+ h5dump_sprint(p_buf, info, H5T_NATIVE_SCHAR, sm_buf+j);
+ if ((strlen(out_buf)+strlen(p_buf)+5) > (80-strlen(prefix))) {
+ printf("%s\"%s\" //\n", prefix, out_buf);
+ strcpy(out_buf, p_buf);
+ if ( j+1 == (int)p_type_nbytes )
+ printf("%s\"%s\"\n", prefix, out_buf);
+ } else {
+ strcat(out_buf, p_buf);
+ if ( j+1 == (int)p_type_nbytes )
+ printf("%s\"%s\"\n", prefix, out_buf);
+ }
+ }
+ } else {
+ h5dump_sprint(p_buf, info, p_type, sm_buf);
+ printf("%s%s\n", prefix, p_buf);
+ }
+
+ return 0 ;
+ }
+
+row_size = 0;
for (elmtno=0; elmtno<p_nelmts; elmtno+=hs_nelmts) {
/* Calculate the hyperslab size */
@@ -314,25 +306,81 @@ int j, print_once=1;
H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL,
&hs_nelmts, NULL);
- if (data_flag == DATASET_DATA) {
- if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf)<0) {
+ if (obj_type == DATASET_DATA) {
+ if (H5Dread(oid, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf)<0) {
return -1;
}
} else {
- if (H5Aread(dset, p_type, sm_buf) < 0)
+ if (H5Aread(oid, p_type, sm_buf) < 0)
return -1;
}
-
/* Print the data */
+
+ if (ischar)
+ ntokens = 5;
+ else
+ ntokens = 1;
+
for (i=0; i<hs_nelmts; i++) {
- /* Render the element */
+ row_size++;
+ h5dump_sprint(p_buf, info, p_type, sm_buf+i*p_type_nbytes);
+
+ if (H5T_COMPOUND==H5Tget_class(p_type))
+ printf("%s%s\n", prefix, p_buf);
+
+ else {
+ if ((strlen(out_buf)+strlen(p_buf)+ntokens) > (80-strlen(prefix))) {
+ printf("%s", prefix);
+ if (ischar) printf("\"");
+ printf("%s", out_buf);
+ if (ischar) printf("\" //");
+ printf("\n");
+
+ strcpy(out_buf, p_buf);
+ if (row_size == (int)p_max_idx[ndims-1]) {
+ printf("%s", prefix);
+ if (ischar) printf("\"");
+ printf("%s", out_buf);
+ *out_buf = '\0';
+ if (ischar) printf("\"");
+ if ((i+1) != hs_nelmts) {
+ if (ischar) printf(" //");
+ else printf(",");
+ }
+ printf("\n");
+ row_size = 0;
+ } else
+ if (!ischar) strcat(out_buf, ", ");
+ } else {
+ strcat(out_buf, p_buf);
+ if (row_size == (int)p_max_idx[ndims-1]) {
+ printf("%s", prefix);
+ if (ischar) printf("\"");
+ printf("%s", out_buf);
+ if (ischar) printf("\"");
+ if ((i+1) != hs_nelmts) {
+ if (ischar) printf(" //");
+ else printf(",");
+ }
+ printf("\n");
+ *out_buf = '\0';
+ row_size = 0;
+ } else
+ if (!ischar) strcat(out_buf, ", ");
+
+ }
+ }
+
+ }
+/*
+ for (i=0; i<hs_nelmts; i++) {
+ Render the element
h5dump_sprint(p_buf, info, p_type, sm_buf+i*p_type_nbytes);
if (elmtno+i+1<p_nelmts) {
strcat(p_buf, OPT(info->elmt_suf1, ","));
}
- /* Print the prefix */
if ((p_column +
strlen(p_buf) +
strlen(OPT(info->elmt_suf2, " ")) +
@@ -340,10 +388,6 @@ int j, print_once=1;
need_prefix = 1;
}
if (need_prefix) {
-/*
- h5dump_prefix(p_prefix, info, elmtno+i, ndims,
- p_min_idx, p_max_idx);
-*/
if (p_column) {
fputs(OPT(info->line_suf, ""), stream);
@@ -356,9 +400,7 @@ int j, print_once=1;
putc('"', stream);
print_once=0;
}
-/*
fputs(p_prefix, stream);
-*/
p_column = strlen(p_prefix);
need_prefix = 0;
} else {
@@ -370,8 +412,10 @@ int j, print_once=1;
p_column += strlen(p_buf);
}
+*/
/* Calculate the next hyperslab offset */
+/*
for (i=ndims, carry=1; i>0 && carry; --i) {
hs_offset[i-1] += hs_size[i-1];
if (hs_offset[i-1]==(hssize_t)p_max_idx[i-1]) {
@@ -380,19 +424,18 @@ int j, print_once=1;
carry = 0;
}
}
+*/
}
- if (p_column) {
/*
+ if (p_column) {
fputs(OPT(info->line_suf, ""), stream);
-*/
if (ischar)
putc('"',stream);
putc('\n', stream);
-/*
fputs(OPT(info->line_sep, ""), stream);
-*/
}
+*/
H5Sclose(sm_space);
H5Sclose(f_space);
return 0;
@@ -422,8 +465,10 @@ h5dump_fixtype(hid_t f_type)
hid_t m_type=-1, f_memb;
hid_t *memb=NULL;
char **name=NULL;
- int nmembs=0, i, j, *ndims=NULL;
+ int nmembs=0, i, j, *ndims=NULL, perm[4];
size_t size, offset, *dims=NULL, nelmts;
+ H5T_str_t strpad;
+
size = H5Tget_size(f_type);
switch (H5Tget_class(f_type)) {
@@ -487,7 +532,7 @@ h5dump_fixtype(hid_t f_type)
if (memb[i]<0) goto done;
/* Get the member dimensions */
- ndims[i] = H5Tget_member_dims(f_type, i, dims+i*4, NULL);
+ ndims[i] = H5Tget_member_dims(f_type, i, dims+i*4, perm);
assert(ndims[i]>=0 && ndims[i]<=4);
for (j=0, nelmts=1; j<ndims[i]; j++) nelmts *= dims[i*4+j];
@@ -506,15 +551,33 @@ h5dump_fixtype(hid_t f_type)
m_type = H5Tcreate(H5T_COMPOUND, size);
for (i=0, offset=0; i<nmembs; i++) {
H5Tinsert_array(m_type, name[i], offset, ndims[i], dims+i*4,
- NULL, memb[i]);
+ perm, memb[i]);
for (j=0, nelmts=1; j<ndims[i]; j++) nelmts *= dims[i*4+j];
offset = ALIGN(offset, H5Tget_size(memb[i])) +
nelmts * H5Tget_size(memb[i]);
}
+/* free name */
break;
case H5T_TIME:
case H5T_STRING:
+
+ m_type = H5Tcopy(H5T_C_S1);
+ H5Tset_size(m_type, size);
+ strpad = H5Tget_strpad(f_type) ;
+ H5Tset_strpad(m_type, strpad);
+
+ if (H5Tequal(m_type,f_type) < 0) {
+ H5Tclose(m_type);
+ m_type = H5Tcopy(H5T_FORTRAN_S1);
+ H5Tset_size(m_type, size);
+ H5Tset_strpad(m_type, strpad);
+ if (H5Tequal(m_type,f_type) < 0)
+ m_type = -1;
+ }
+
+ break;
+
case H5T_BITFIELD:
case H5T_OPAQUE:
/*
@@ -545,7 +608,7 @@ h5dump_fixtype(hid_t f_type)
/*-------------------------------------------------------------------------
- * Function: h5dump
+ * Function: h5dump1
*
* Purpose: Print some values from a dataset DSET to the file STREAM
* after converting all types to P_TYPE (which should be a
@@ -564,17 +627,14 @@ h5dump_fixtype(hid_t f_type)
*-------------------------------------------------------------------------
*/
int
-h5dump1(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type, int data_flag)
+h5dump1 (FILE *stream, const h5dump_t *info, hid_t oid, hid_t _p_type, int obj_type)
{
hid_t f_space;
hid_t p_type = _p_type;
hid_t f_type;
- int status;
+ int status = -1;
h5dump_t info_dflt;
- char p_buf[256], sm_buf[256]; /*tmp for scala */
- int j;
-
/* Use default values */
if (!stream) stream = stdout;
if (!info) {
@@ -582,42 +642,35 @@ h5dump1(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type, int data_
info = &info_dflt;
}
- if (p_type<0) {
- if (data_flag == DATASET_DATA)
- f_type = H5Dget_type(dset);
+ if (p_type < 0) {
+
+ if (obj_type == DATASET_DATA)
+ f_type = H5Dget_type(oid);
else
- f_type = H5Aget_type(dset);
+ f_type = H5Aget_type(oid);
+
+ if (f_type < 0) return status;
p_type = h5dump_fixtype(f_type);
+
H5Tclose(f_type);
- if (p_type<0) return -1;
+
+ if (p_type < 0) return status;
}
/* Check the data space */
- if (data_flag == DATASET_DATA)
- f_space = H5Dget_space(dset);
+ if (obj_type == DATASET_DATA)
+ f_space = H5Dget_space(oid);
else
- f_space = H5Aget_space(dset);
+ f_space = H5Aget_space(oid);
+
+ if (f_space < 0) return status;
- if (H5Sis_simple(f_space)<=0) return -1;
-
-
- if ( H5Sget_simple_extent_ndims(f_space) == 0){
- if (data_flag == ATTRIBUTE_DATA) {
- if (H5Aread(dset, p_type, sm_buf) < 0)
- return -1;
- } else return -1;
- h5dump_sprint(p_buf, info, p_type, sm_buf);
- for (j=0;j<indent+col;j++) putc(' ', stream);
- fputs(p_buf, stream);
- putc('\n', stream);
- H5Sclose(f_space);
- } else {
+ if (H5Sis_simple(f_space) >= 0)
+ status = h5dump_simple(stream, info, oid, p_type, obj_type);
+
H5Sclose(f_space);
- /* Print the data */
- status = h5dump_simple(stream, info, dset, p_type, data_flag);
- }
- if (p_type!=_p_type) H5Tclose(p_type);
+ if (p_type != _p_type) H5Tclose(p_type);
return status;
}
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