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diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c
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-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-* Copyright by The HDF Group. *
-* Copyright by the Board of Trustees of the University of Illinois. *
-* All rights reserved. *
-* *
-* This file is part of HDF5. The full HDF5 copyright notice, including *
-* terms governing use, modification, and redistribution, is contained in *
-* the files COPYING and Copyright.html. COPYING can be found at the root *
-* of the source code distribution tree; Copyright.html can be found at the *
-* root level of an installed copy of the electronic HDF5 document set and *
-* is linked from the top-level documents page. It can also be found at *
-* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
-* access to either file, you may request a copy from help@hdfgroup.org. *
-* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-#include "h5repack.h"
-#include "h5test.h"
-#include "h5diff.h"
-#include "h5tools.h"
-#include "h5tools_utils.h"
-
-#define GOERROR {H5_FAILED(); goto error;}
-
-
-/* fill value test */
-#define FNAME0 "h5repack_fill.h5"
-#define FNAME0OUT "h5repack_fill_out.h5"
-/* HDF5 objects and all dataset datatypes */
-#define FNAME1 "h5repack_objs.h5"
-#define FNAME1OUT "h5repack_objs_out.h5"
-/* attributes, all datatypes */
-#define FNAME2 "h5repack_attr.h5"
-#define FNAME2OUT "h5repack_attr_out.h5"
-/* hard links */
-#define FNAME3 "h5repack_hlink.h5"
-#define FNAME3OUT "h5repack_hlink_out.h5"
-/* layout */
-#define FNAME4 "h5repack_layout.h5"
-#define FNAME4OUT "h5repack_layout_out.h5"
-/* H5D_ALLOC_TIME_EARLY */
-#define FNAME5 "h5repack_early.h5"
-#define FNAME5OUT "h5repack_early_out.h5"
-#define FNAME6 "h5repack_early2.h5"
-#ifdef H5_HAVE_FILTER_SZIP
-/* SZIP filter */
-#define FNAME7 "h5repack_szip.h5"
-#define FNAME7OUT "h5repack_szip_out.h5"
-#endif
-/* GZIP filter */
-#define FNAME8 "h5repack_deflate.h5"
-#define FNAME8OUT "h5repack_deflate_out.h5"
-/* GZIP filter */
-#define FNAME9 "h5repack_shuffle.h5"
-#define FNAME9OUT "h5repack_shuffle_out.h5"
-/* Fletcher filter */
-#define FNAME10 "h5repack_fletcher.h5"
-#define FNAME10OUT "h5repack_fletcher_out.h5"
-/* All filters */
-#define FNAME11 "h5repack_filters.h5"
-#define FNAME11OUT "h5repack_filters_out.h5"
-/* NBit filter */
-#define FNAME12 "h5repack_nbit.h5"
-#define FNAME12OUT "h5repack_nbit_out.h5"
-/* Scale Offset filter */
-#define FNAME13 "h5repack_soffset.h5"
-#define FNAME13OUT "h5repack_soffset_out.h5"
-/* Big file to test read by hyperslabs */
-#define FNAME14 "h5repack_big.h5"
-#define FNAME14OUT "h5repack_big_out.h5"
-/* external file */
-#define FNAME15 "h5repack_ext.h5"
-#define FNAME15OUT "h5repack_ext_out.h5"
-/* File w/userblock */
-#define FNAME16 "h5repack_ub.h5"
-#define FNAME16OUT "h5repack_ub_out.h5"
-/* Named datatypes */
-#define FNAME17 "h5repack_named_dtypes.h5"
-#define FNAME17OUT "h5repack_named_dtypes_out.h5"
-
-#define FNAME18 "h5repack_layout2.h5"
-
-#define FNAME_UB "ublock.bin"
-
-/* obj and region references */
-#define FNAME_REF "h5repack_refs.h5"
-
-/* obj and region references in attr of compound and vlen type */
-#define FNAME_ATTR_REF "h5repack_attr_refs.h5"
-
-const char *H5REPACK_FILENAMES[] = {
- "h5repack_big_out",
- NULL
-};
-
-#define H5REPACK_EXTFILE "h5repack_ext.bin"
-
-/* Name of tool */
-#define PROGRAMNAME "h5repacktst"
-
-
-#define DIM1 40
-#define DIM2 20
-#define CDIM1 DIM1/2
-#define CDIM2 DIM2/2
-#define RANK 2
-
-/* Size of userblock (for userblock test) */
-#define USERBLOCK_SIZE 2048
-
-/* obj and region references */
-#define NAME_OBJ_DS1 "Dset1"
-#define NAME_OBJ_GRP "Group"
-#define NAME_OBJ_NDTYPE "NamedDatatype"
-#define NAME_OBJ_DS2 "Dset2"
-#define REG_REF_DS1 "Dset_REGREF"
-
-/*-------------------------------------------------------------------------
-* prototypes
-*-------------------------------------------------------------------------
-*/
-static int make_all_objects(hid_t loc_id);
-static int make_attributes(hid_t loc_id);
-static int make_hlinks(hid_t loc_id);
-static int make_early(void);
-static int make_layout(hid_t loc_id);
-static int make_layout2(hid_t loc_id);
-static int make_layout3(hid_t loc_id);
-#ifdef H5_HAVE_FILTER_SZIP
-static int make_szip(hid_t loc_id);
-#endif /* H5_HAVE_FILTER_SZIP */
-static int make_deflate(hid_t loc_id);
-static int make_shuffle(hid_t loc_id);
-static int make_fletcher32(hid_t loc_id);
-static int make_nbit(hid_t loc_id);
-static int make_scaleoffset(hid_t loc_id);
-static int make_all_filters(hid_t loc_id);
-static int make_fill(hid_t loc_id);
-static int make_big(hid_t loc_id);
-static int make_testfiles(void);
-static int write_dset_in(hid_t loc_id,const char* dset_name,hid_t file_id,int make_diffs );
-static int write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs );
-static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *dset_name,hid_t tid,void *buf );
-static int make_dset(hid_t loc_id,const char *name,hid_t sid,hid_t dcpl,void *buf);
-static int make_attr(hid_t loc_id,int rank,hsize_t *dims,const char *attr_name,hid_t tid,void *buf);
-static int make_dset_reg_ref(hid_t loc_id);
-static int make_external(hid_t loc_id);
-static int make_userblock(void);
-static int verify_userblock( const char* filename);
-static int make_userblock_file(void);
-static int make_named_dtype(hid_t loc_id);
-static int make_references(hid_t loc_id);
-static int make_complex_attr_references(hid_t loc_id);
-
-
-/*-------------------------------------------------------------------------
-* Function: main
-*
-* Purpose: Executes h5repack tests
-*
-* Return: Success: zero
-* Failure: 1
-*
-* Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
-* January, 6, 2004
-*
-*-------------------------------------------------------------------------
-*/
-
-int main (void)
-{
- pack_opt_t pack_options;
- diff_opt_t diff_options;
- hsize_t fs_size = 0; /* free space section threshold */
- H5F_file_space_type_t fs_type = H5F_FILE_SPACE_DEFAULT; /* file space handling strategy */
- h5_stat_t file_stat;
- h5_stat_size_t fsize1, fsize2; /* file sizes */
-#if defined (H5_HAVE_FILTER_SZIP)
- int szip_can_encode = 0;
-#endif
-
- h5tools_setprogname(PROGRAMNAME);
- h5tools_setstatus(EXIT_SUCCESS);
-
- /* Initialize h5tools lib */
- h5tools_init();
-
- /* initialize */
- HDmemset(&diff_options, 0, sizeof (diff_opt_t));
- HDmemset(&pack_options, 0, sizeof (pack_opt_t));
-
- /* run tests */
- puts("Testing h5repack:");
-
- /* make the test files */
- TESTING(" generating datasets");
- if (make_testfiles() < 0)
- GOERROR;
- PASSED();
-
- /*-------------------------------------------------------------------------
- * Format of the tests:
- *
- * 1) make a copy of the file with h5repack
- * 2) use the h5diff function to compare the input and output file
- *-------------------------------------------------------------------------
- */
-
-
- /*-------------------------------------------------------------------------
- * file with fill values
- *-------------------------------------------------------------------------
- */
-
- TESTING(" copy of datasets (fill values)");
-
- /* fs_type = 0; fs_size = 0 */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME0,FNAME0OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME0, FNAME0OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_cmp_pl(FNAME0,FNAME0OUT)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
-
- /*-------------------------------------------------------------------------
- * file with all kinds of dataset datatypes
- *-------------------------------------------------------------------------
- */
- TESTING(" copy of datasets (all datatypes)");
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_cmp_pl(FNAME1,FNAME1OUT)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
-
- /*-------------------------------------------------------------------------
- * file with attributes
- *-------------------------------------------------------------------------
- */
- TESTING(" copy of datasets (attributes)");
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME2,FNAME2OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME2, FNAME2OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_cmp_pl(FNAME2,FNAME2OUT)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- /*-------------------------------------------------------------------------
- * file with hardlinks
- *-------------------------------------------------------------------------
- */
- TESTING(" copy of datasets (hardlinks)");
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME3,FNAME3OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME3, FNAME3OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_cmp_pl(FNAME3,FNAME3OUT)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
- /*-------------------------------------------------------------------------
- * alloc early test
- *-------------------------------------------------------------------------
- */
- TESTING(" copy of allocation early file");
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME5,FNAME5OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME5, FNAME5OUT, &pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- /*-------------------------------------------------------------------------
- * the remaining files differ in the dcpl's
- *-------------------------------------------------------------------------
- */
-
- /*-------------------------------------------------------------------------
- * deflate
- *-------------------------------------------------------------------------
- */
- TESTING(" adding deflate filter (old_format)");
-
-#ifdef H5_HAVE_FILTER_DEFLATE
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-#else
- SKIPPED();
-#endif
-
- TESTING(" adding deflate filter (new format)");
-#ifdef H5_HAVE_FILTER_DEFLATE
- /*-------------------------------------------------------------------------
- * test an individual object option
- * For new format, "dset1" should be using Fixed Array indexing
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, TRUE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-#else
- SKIPPED();
-#endif
-
- /*-------------------------------------------------------------------------
- * test all objects option
- *-------------------------------------------------------------------------
- */
-
- TESTING(" adding deflate filter to all");
-
-#ifdef H5_HAVE_FILTER_DEFLATE
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("GZIP=1",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-#else
- SKIPPED();
-#endif
-
- /*-------------------------------------------------------------------------
- * SZIP
- *-------------------------------------------------------------------------
- */
-
- TESTING(" adding szip filter");
-
-#if defined (H5_HAVE_FILTER_SZIP)
- if (h5tools_can_encode(H5Z_FILTER_SZIP) >0) {
- szip_can_encode = 1;
- }
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- *-------------------------------------------------------------------------
- */
-
- if (szip_can_encode) {
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("dset2:CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
- } else {
- SKIPPED();
- }
-#else
- SKIPPED();
-#endif
-
-
- /*-------------------------------------------------------------------------
- * test all objects option
- *-------------------------------------------------------------------------
- */
- TESTING(" adding szip filter to all");
-
-#if defined (H5_HAVE_FILTER_SZIP)
- if (szip_can_encode) {
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("SZIP=8,NN",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
- } else {
- SKIPPED();
- }
-#else
- SKIPPED();
-#endif
-
-
- TESTING(" addding shuffle filter");
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
- /*-------------------------------------------------------------------------
- * test all objects option
- *-------------------------------------------------------------------------
- */
-
- TESTING(" addding shuffle filter to all");
-
- /* fs_type = H5F_FILE_SPACE_ALL_PERSIST; fs_size = 1 */
- if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("SHUF",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" adding checksum filter");
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset1:FLET",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
- /*-------------------------------------------------------------------------
- * test all objects option
- *-------------------------------------------------------------------------
- */
-
-
- TESTING(" adding checksum filter to all");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("FLET",&pack_options) < 0)
- GOERROR;
- if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" filter queue fletcher, shuffle, deflate, szip");
-
- /*-------------------------------------------------------------------------
- * add some filters
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack_addfilter("dset1:FLET",&pack_options) < 0)
- GOERROR;
- if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0)
- GOERROR;
-
-#if defined (H5_HAVE_FILTER_SZIP)
- if (szip_can_encode) {
- if (h5repack_addfilter("dset1:SZIP=8,NN",&pack_options) < 0)
- GOERROR;
- }
-#endif
-
-#ifdef H5_HAVE_FILTER_DEFLATE
- if (h5repack_addfilter("dset1:GZIP=1",&pack_options) < 0)
- GOERROR;
-#endif
-
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" adding layout chunked (old format)");
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" adding layout chunked (new format)");
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- * For new format, "dset1" should be using Fixed Array indexing
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, TRUE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- /*-------------------------------------------------------------------------
- * test all objects option
- *-------------------------------------------------------------------------
- */
- TESTING(" adding layout chunked to all");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
- TESTING(" adding layout contiguous");
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:CONTI",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
- TESTING(" adding layout contiguous to all");
-
- /*-------------------------------------------------------------------------
- * test all objects option
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("CONTI",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- /*-------------------------------------------------------------------------
- * do the same test for a file with filters (chunked)
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("CONTI",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
- TESTING(" adding layout compact");
-
- /*-------------------------------------------------------------------------
- * test an individual object option
- *-------------------------------------------------------------------------
- */
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset1:COMPA",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" adding layout compact to all");
-
- /*-------------------------------------------------------------------------
- * test all objects option
- *-------------------------------------------------------------------------
- */
-
- /* fs_type = H5F_FILE_SPACE_ALL; fs_size = 2 */
- if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("COMPA",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" layout compact to contiguous conversion");
-
- /*-------------------------------------------------------------------------
- * layout compact to contiguous conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_compact:CONTI",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout compact to chunk conversion");
-
- /*-------------------------------------------------------------------------
- * layout compact to chunk conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout compact to compact conversion");
-
- /*-------------------------------------------------------------------------
- * layout compact to compact conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_compact:COMPA",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout contiguous to compact conversion");
- /*-------------------------------------------------------------------------
- * layout contiguous to compact conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout contiguous to chunk conversion");
- /*-------------------------------------------------------------------------
- * layout contiguous to chunk conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout contiguous to contiguous conversion");
-
- /*-------------------------------------------------------------------------
- * layout contiguous to contiguous conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout chunked to compact conversion");
- /*-------------------------------------------------------------------------
- * layout chunked to compact conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_chunk:COMPA",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout chunked to contiguous conversion");
-
- /*-------------------------------------------------------------------------
- * layout chunked to contiguous conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_chunk:CONTI",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- TESTING(" layout chunked to chunk conversion");
- /*-------------------------------------------------------------------------
- * layout chunked to chunked conversion
- *-------------------------------------------------------------------------
- */
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
-
- /*-------------------------------------------------------------------------
- * the following tests assume the input files have filters
- * FNAME7
- * FNAME8
- * FNAME9
- * FNAME10
- * FNAME11
- *-------------------------------------------------------------------------
- */
-
-
- TESTING(" copy of szip filter");
-
-#if defined (H5_HAVE_FILTER_SZIP)
- if (szip_can_encode) {
- /* fs_type = H5F_FILE_SPACE_AGGR_VFD; fs_size = 3 */
- if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_cmp_pl(FNAME7,FNAME7OUT)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
- } else {
- SKIPPED();
- }
-#else
- SKIPPED();
-#endif
-
- TESTING(" removing szip filter");
-
-#if defined (H5_HAVE_FILTER_SZIP)
- if (szip_can_encode) {
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_szip:NONE",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
- } else {
- SKIPPED();
- }
-#else
- SKIPPED();
-#endif
-
-
- TESTING(" copy of deflate filter");
-
-#ifdef H5_HAVE_FILTER_DEFLATE
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-#else
- SKIPPED();
-#endif
-
-
- TESTING(" removing deflate filter");
-
-#ifdef H5_HAVE_FILTER_DEFLATE
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, ++fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_deflate:NONE",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-#else
- SKIPPED();
-#endif
-
-
-
- TESTING(" copy of shuffle filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" removing shuffle filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_shuffle:NONE",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" copy of fletcher filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" removing fletcher filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" copy of nbit filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" removing nbit filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_nbit:NONE",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" adding nbit filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_int31:NBIT",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" copy of scaleoffset filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" removing scaleoffset filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- TESTING(" adding scaleoffset filter");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-
-
- /*-------------------------------------------------------------------------
- * file with all filters
- * dset_all
- * dset_deflate
- * dset_szip
- * dset_shuffle
- * dset_fletcher32
- *-------------------------------------------------------------------------
- */
-
-
- TESTING(" filter conversion from deflate to szip");
-
-#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE)
-
- if (szip_can_encode) {
- /* fs_type = H5F_FILE_SPACE_VFD; fs_size = 4 */
- if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
- } else {
- SKIPPED();
- }
-#else
- SKIPPED();
-#endif
-
- TESTING(" filter conversion from szip to deflate");
-
-#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE)
-
- if (szip_can_encode) {
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
- } else {
- SKIPPED();
- }
-#else
- SKIPPED();
-#endif
-
-
- /*-------------------------------------------------------------------------
- * test the NONE global option
- *-------------------------------------------------------------------------
- */
-
- TESTING(" removing all filters");
-
-#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE)
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("NONE",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-#else
- SKIPPED();
-#endif
-
- /*-------------------------------------------------------------------------
- * test a big file
- *-------------------------------------------------------------------------
- */
- TESTING(" big file");
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME14,FNAME14OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME14, FNAME14OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- /*-------------------------------------------------------------------------
- * test external dataset
- *-------------------------------------------------------------------------
- */
- TESTING(" external datasets");
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack(FNAME15,FNAME15OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME15,FNAME15OUT,NULL,NULL,&diff_options) > 0)
- GOERROR;
- if (h5repack_verify(FNAME15, FNAME15OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
- /*-------------------------------------------------------------------------
- * test file with userblock
- *-------------------------------------------------------------------------
- */
- TESTING(" file with userblock");
- if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if(h5repack(FNAME16, FNAME16OUT, &pack_options) < 0)
- GOERROR;
- if(h5diff(FNAME16, FNAME16OUT, NULL, NULL, &diff_options) > 0)
- GOERROR;
- if(h5repack_verify(FNAME16, FNAME16OUT, &pack_options) <= 0)
- GOERROR;
- if(verify_userblock(FNAME16OUT) < 0)
- GOERROR;
- if(h5repack_end(&pack_options) < 0)
- GOERROR;
- PASSED();
-
- /*-------------------------------------------------------------------------
- * test --latest options
- *-------------------------------------------------------------------------
- */
- TESTING(" latest file format options");
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- pack_options.latest=1;
- pack_options.grp_compact=10;
- pack_options.grp_indexed=5;
- pack_options.msg_size[0] = 10;
- pack_options.msg_size[1] = 20;
- pack_options.msg_size[2] = 30;
- pack_options.msg_size[3] = 40;
- pack_options.msg_size[4] = 50;
- if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) > 0)
- GOERROR;
- if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
- PASSED();
-
-
- /*-------------------------------------------------------------------------
- * test several global filters
- *-------------------------------------------------------------------------
- */
-
- TESTING(" several global filters");
-
-#if defined (H5_HAVE_FILTER_DEFLATE)
-
- if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
- if (h5repack_addfilter("GZIP=1",&pack_options) < 0)
- GOERROR;
- if (h5repack_addfilter("SHUF",&pack_options) < 0)
- GOERROR;
- if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
- GOERROR;
- if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0)
- GOERROR;
- if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0)
- GOERROR;
- if (h5repack_end (&pack_options) < 0)
- GOERROR;
-
- PASSED();
-#else
- SKIPPED();
-#endif
-
-
- /*-------------------------------------------------------------------------
- * test file with userblock
- *-------------------------------------------------------------------------
- */
- TESTING(" file with added userblock");
-
-#ifdef H5_HAVE_FILTER_DEFLATE
-
- if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
-
- /* add the options for a user block size and user block filename */
- pack_options.ublock_size = USERBLOCK_SIZE;
- pack_options.ublock_filename = FNAME_UB;
-
- if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0)
- GOERROR;
- if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0)
- GOERROR;
- if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0)
- GOERROR;
- if(verify_userblock(FNAME8OUT) < 0)
- GOERROR;
- if(h5repack_end(&pack_options) < 0)
- GOERROR;
-
-
- PASSED();
-#else
- SKIPPED();
-#endif
-
-
- /*-------------------------------------------------------------------------
- * test file with aligment
- *-------------------------------------------------------------------------
- */
- TESTING(" file with aligment");
-
-#ifdef H5_HAVE_FILTER_DEFLATE
-
- if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
-
- /* add the options for aligment */
- pack_options.alignment = 1;
- pack_options.threshold = 1;
-
- if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0)
- GOERROR;
- if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0)
- GOERROR;
- if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0)
- GOERROR;
-
- /* verify aligment */
- {
- hsize_t threshold;
- hsize_t alignment;
- hid_t fapl;
- hid_t fid;
-
- if (( fid = H5Fopen(FNAME8OUT, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0 )
- GOERROR;
- if ((fapl = H5Fget_access_plist(fid)) < 0)
- GOERROR;
- if ( H5Pget_alignment(fapl, &threshold, &alignment ) < 0)
- GOERROR;
- if ( threshold != 1 )
- GOERROR;
- if ( alignment != 1 )
- GOERROR;
- if ( H5Pclose(fapl) < 0)
- GOERROR;
- if (H5Fclose(fid) < 0)
- GOERROR;
-
- }
-
-
- if(h5repack_end(&pack_options) < 0)
- GOERROR;
-
-
- PASSED();
-#else
- SKIPPED();
-#endif
-
- /*-------------------------------------------------------------------------
- * test file with userblock
- *-------------------------------------------------------------------------
- */
- TESTING(" file with committed datatypes");
-
- if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0)
- GOERROR;
-
- if(h5repack(FNAME17, FNAME17OUT, &pack_options) < 0)
- GOERROR;
- if(h5diff(FNAME17, FNAME17OUT, NULL, NULL, &diff_options) > 0)
- GOERROR;
- if(h5repack_verify(FNAME17, FNAME17OUT, &pack_options) <= 0)
- GOERROR;
- if(h5repack_end(&pack_options) < 0)
- GOERROR;
-
-
- PASSED();
-
- /*-------------------------------------------------------------------------
- * test --metadata_block_size option
- * Also verify that output file using the metadata_block_size option is
- * larger than the output file one not using it.
- * FNAME4 is used because it is the same as the test file used for the
- * shell script version of this test (h5repack.sh).
- *-------------------------------------------------------------------------
- */
- TESTING(" metadata block size option");
- /* First run without metadata option. No need to verify the correctness */
- /* since this has been verified by earlier tests. Just record the file */
- /* size of the output file. */
- if(h5repack_init(&pack_options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0)
- GOERROR;
- if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0)
- GOERROR;
- if(HDstat(FNAME4OUT, &file_stat) < 0)
- GOERROR;
- fsize1 = file_stat.st_size;
- if(h5repack_end(&pack_options) < 0)
- GOERROR;
-
- /* run it again with metadata option */
- if(h5repack_init(&pack_options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0)
- GOERROR;
- pack_options.meta_block_size = 8192;
- if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0)
- GOERROR;
- if(h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0)
- GOERROR;
- if(h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0)
- GOERROR;
- /* record the file size of the output file */
- if(HDstat(FNAME4OUT, &file_stat) < 0)
- GOERROR;
- fsize2 = file_stat.st_size;
- /* verify second file size is larger than the first one */
- if(fsize2 <= fsize1)
- GOERROR;
- if(h5repack_end(&pack_options) < 0)
- GOERROR;
- PASSED();
-
-
- /*-------------------------------------------------------------------------
- * clean temporary test files
- *-------------------------------------------------------------------------
- */
- {
- hid_t fapl;
-
- fapl = h5_fileaccess();
- h5_clean_files(H5REPACK_FILENAMES, fapl);
-
- }
-
- puts("All h5repack tests passed.");
-
- h5tools_close();
-
- return 0;
-
-error:
- puts("***** H5REPACK TESTS FAILED *****");
- return 1;
-
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_testfiles
-*
-* Purpose: make a test file with all types of HDF5 objects,
-* datatypes and filters
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_testfiles(void)
-{
- hid_t fid;
-
- /*-------------------------------------------------------------------------
- * create a file for general copy test
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME0,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_fill(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create another file for general copy test (all datatypes)
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_all_objects(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file for attributes copy test
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_attributes(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file for hard links test
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_hlinks(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file for layouts test
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME4,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_layout(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file for layout conversion test
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- return -1;
-
- if(make_layout2(fid) < 0)
- goto out;
-
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * for test layout conversions form chunk with unlimited max dims
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate("h5repack_layout3.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- return -1;
-
- if(make_layout3(fid) < 0)
- goto out;
-
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file for the H5D_ALLOC_TIME_EARLY test
- *-------------------------------------------------------------------------
- */
- if (make_early() < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * create a file with the SZIP filter
- *-------------------------------------------------------------------------
- */
-#ifdef H5_HAVE_FILTER_SZIP
- if((fid = H5Fcreate(FNAME7,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_szip(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-#endif /* H5_HAVE_FILTER_SZIP */
-
-
- /*-------------------------------------------------------------------------
- * create a file with the deflate filter
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME8,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_deflate(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with the shuffle filter
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME9,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_shuffle(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with the fletcher32 filter
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME10,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_fletcher32(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with all the filters
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME11,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_all_filters(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with the nbit filter
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME12,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_nbit(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with the scaleoffset filter
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME13,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_scaleoffset(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a big dataset
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME14,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_big(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with external dataset
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME15,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_external(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with userblock
- *-------------------------------------------------------------------------
- */
- if(make_userblock() < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * create a userblock file
- *-------------------------------------------------------------------------
- */
- if(make_userblock_file() < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * create a file with named datatypes
- *-------------------------------------------------------------------------
- */
- if((fid = H5Fcreate(FNAME17,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_named_dtype(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create obj and region reference type datasets (bug1814)
- * add attribute with int type (bug1726)
- * add attribute with obj and region reference type (bug1726)
- *-------------------------------------------------------------------------*/
- if((fid = H5Fcreate(FNAME_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- /* create reference type datasets */
- if (make_references(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a file with obj and region references in attribute of compound and
- * vlen datatype
- *-------------------------------------------------------------------------*/
- if((fid = H5Fcreate(FNAME_ATTR_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0)
- return -1;
- if (make_complex_attr_references(fid) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- return -1;
-
- return 0;
-
-out:
- H5Fclose(fid);
- return -1;
-}
-
-
-
-/*-------------------------------------------------------------------------
-* Function: make_all_objects
-*
-* Purpose: make a test file with all types of HDF5 objects
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_all_objects(hid_t loc_id)
-{
- hid_t did=-1;
- hid_t gid=-1;
- hid_t tid=-1;
- hid_t rid=-1;
- hid_t sid=-1;
- hid_t gcplid=-1;
- hsize_t dims[1]={2};
- /* compound datatype */
- typedef struct s_t
- {
- int a;
- float b;
- } s_t;
-
- /*-------------------------------------------------------------------------
- * H5G_DATASET
- *-------------------------------------------------------------------------
- */
- if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "dset_referenced", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * H5G_GROUP
- *-------------------------------------------------------------------------
- */
- if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Gclose(gid) < 0)
- goto out;
-
- /* create a group "g2" with H5P_CRT_ORDER_TRACKED set */
- if ((gcplid = H5Pcreate(H5P_GROUP_CREATE)) < 0)
- goto out;
- if (H5Pset_link_creation_order(gcplid, H5P_CRT_ORDER_TRACKED) < 0)
- goto out;
- if ((gid = H5Gcreate2(loc_id, "g2", H5P_DEFAULT, gcplid, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Gclose(gid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5G_TYPE
- *-------------------------------------------------------------------------
- */
-
- /* create a compound datatype */
- if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0)
- goto out;
- if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_INT) < 0)
- goto out;
- if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT) < 0)
- goto out;
- if (H5Tcommit2(loc_id, "type", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5G_LINK
- *-------------------------------------------------------------------------
- */
-
- if (H5Lcreate_soft("dset", loc_id, "link", H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5G_UDLINK
- *-------------------------------------------------------------------------
- */
- /* Create an external link. Other UD links are not supported by h5repack */
- if (H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * write a series of datasetes at root
- *-------------------------------------------------------------------------
- */
-
- if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0)
- goto out;
- if (write_dset_in(rid,"dset_referenced",loc_id,0) < 0)
- goto out;
- if (H5Gclose(rid) < 0)
- goto out;
-
- /* close */
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- if (H5Pclose(gcplid) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Dclose(did);
- H5Gclose(gid);
- H5Gclose(rid);
- H5Sclose(sid);
- H5Tclose(tid);
- H5Pclose(gcplid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_attributes
-*
-* Purpose: make a test file with all types of attributes
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_attributes(hid_t loc_id)
-{
- hid_t did=-1;
- hid_t gid=-1;
- hid_t rid=-1;
- hid_t sid=-1;
- hsize_t dims[1]={2};
-
- /*-------------------------------------------------------------------------
- * H5G_DATASET
- *-------------------------------------------------------------------------
- */
- if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5G_GROUP
- *-------------------------------------------------------------------------
- */
- if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * write a series of attributes on the dataset, group, and root group
- *-------------------------------------------------------------------------
- */
-
- if ( write_attr_in(did,"dset",loc_id,0) < 0)
- goto out;
- if (write_attr_in(gid,"dset",loc_id,0) < 0)
- goto out;
- if (write_attr_in(rid,"dset",loc_id,0) < 0)
- goto out;
-
- /* close */
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Gclose(gid) < 0)
- goto out;
- if (H5Gclose(rid) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Dclose(did);
- H5Gclose(gid);
- H5Gclose(rid);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-
-}
-
-/*-------------------------------------------------------------------------
-* Function: make_hlinks
-*
-* Purpose: make a test file with hard links
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_hlinks(hid_t loc_id)
-{
- hid_t g1id=-1;
- hid_t g2id=-1;
- hid_t g3id=-1;
- hsize_t dims[2]={3,2};
- int buf[3][2]= {{1,1},{1,2},{2,2}};
-
- /*-------------------------------------------------------------------------
- * create a dataset and some hard links to it
- *-------------------------------------------------------------------------
- */
-
- if(write_dset(loc_id, 2, dims, "dset", H5T_NATIVE_INT, buf) < 0)
- return -1;
- if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link1 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
- return -1;
- if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link2 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
- return -1;
- if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link3 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0)
- return -1;
-
- /*-------------------------------------------------------------------------
- * create a group and some hard links to it
- *-------------------------------------------------------------------------
- */
-
- if((g1id = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if((g2id = H5Gcreate2(g1id, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if((g3id = H5Gcreate2(g2id, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- if(H5Lcreate_hard(loc_id, "g1", g2id, "link1 to g1", H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
- if(H5Lcreate_hard(g1id, "g2", g3id, "link1 to g2", H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
-
-
- /* close */
- if (H5Gclose(g1id) < 0)
- goto out;
- if (H5Gclose(g2id) < 0)
- goto out;
- if (H5Gclose(g3id) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Gclose(g1id);
- H5Gclose(g2id);
- H5Gclose(g3id);
- } H5E_END_TRY;
- return -1;
-
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_szip
-*
-* Purpose: make a dataset with the SZIP filter
-*
-*-------------------------------------------------------------------------
-*/
-#ifdef H5_HAVE_FILTER_SZIP
-static
-int make_szip(hid_t loc_id)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t sid; /* dataspace ID */
- unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
- unsigned szip_pixels_per_block=8;
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- int i, j, n;
- int szip_can_encode = 0;
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dcpl */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- /* set up chunk */
- if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * SZIP
- *-------------------------------------------------------------------------
- */
- /* Make sure encoding is enabled */
- if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1)
- {
- szip_can_encode = 1;
- }
- if (szip_can_encode)
- {
- /* set szip data */
- if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
- goto out;
- if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0)
- goto out;
- }
- else
- {
- /* WARNING? SZIP is decoder only, can't generate test files */
- }
-
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-#endif /* H5_HAVE_FILTER_SZIP */
-
-
-
-/*-------------------------------------------------------------------------
-* Function: make_deflate
-*
-* Purpose: make a dataset with the deflate filter
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_deflate(hid_t loc_id)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t sid; /* dataspace ID */
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- hobj_ref_t bufref[1]; /* reference */
- hsize_t dims1r[1]={1};
- int i, j, n;
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
-
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dcpl */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- /* set up chunk */
- if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * GZIP
- *-------------------------------------------------------------------------
- */
-#if defined (H5_HAVE_FILTER_DEFLATE)
- /* set deflate data */
- if(H5Pset_deflate(dcpl, 9) < 0)
- goto out;
- if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0)
- goto out;
-
- /* create a reference to the dataset, test second seeep of file for references */
-
- if (H5Rcreate(&bufref[0],loc_id,"dset_deflate",H5R_OBJECT,(hid_t)-1) < 0)
- goto out;
- if (write_dset(loc_id,1,dims1r,"ref",H5T_STD_REF_OBJ,bufref) < 0)
- goto out;
-#endif
-
-
- /*-------------------------------------------------------------------------
- * close space and dcpl
- *-------------------------------------------------------------------------
- */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_shuffle
-*
-* Purpose: make a dataset with the shuffle filter
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_shuffle(hid_t loc_id)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t sid; /* dataspace ID */
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- int i, j, n;
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dcpl */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- /* set up chunk */
- if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * shuffle
- *-------------------------------------------------------------------------
- */
-
- /* set the shuffle filter */
- if (H5Pset_shuffle(dcpl) < 0)
- goto out;
- if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * close space and dcpl
- *-------------------------------------------------------------------------
- */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-/*-------------------------------------------------------------------------
-* Function: make_fletcher32
-*
-* Purpose: make a dataset with the fletcher32 filter
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_fletcher32(hid_t loc_id)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t sid; /* dataspace ID */
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- int i, j, n;
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- /* set up chunk */
- if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * fletcher32
- *-------------------------------------------------------------------------
- */
-
- /* remove the filters from the dcpl */
- if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
- goto out;
- /* set the checksum filter */
- if (H5Pset_fletcher32(dcpl) < 0)
- goto out;
- if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * close space and dcpl
- *-------------------------------------------------------------------------
- */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_nbit
-*
-* Purpose: make a dataset with the nbit filter
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_nbit(hid_t loc_id)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t sid; /* dataspace ID */
- hid_t dtid;
- hid_t dsid;
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- int i, j, n;
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- /* set up chunk */
- if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
-
- dtid = H5Tcopy(H5T_NATIVE_INT);
- if (H5Tset_precision(dtid,(H5Tget_precision(dtid) - 1)) < 0)
- {
- H5Tclose(dtid);
- goto out;
- }
-
- /* remove the filters from the dcpl */
- if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0)
- {
- H5Tclose(dtid);
- goto out;
- }
- if(H5Pset_nbit(dcpl) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- H5Dclose(dsid);
-
- if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if((dsid = H5Dcreate2(loc_id, "dset_int31", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- H5Dclose(dsid);
-
- /*-------------------------------------------------------------------------
- * close
- *-------------------------------------------------------------------------
- */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
- if (H5Tclose(dtid) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_scaleoffset
-*
-* Purpose: make a dataset with the scaleoffset filter
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_scaleoffset(hid_t loc_id)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t sid; /* dataspace ID */
- hid_t dtid;
- hid_t dsid;
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- int i, j, n;
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- /* set up chunk */
- if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
-
- dtid = H5Tcopy(H5T_NATIVE_INT);
-
- /* remove the filters from the dcpl */
- if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if(H5Pset_scaleoffset(dcpl, H5Z_SO_INT, 31) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if((dsid = H5Dcreate2(loc_id, "dset_scaleoffset", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- H5Dclose(dsid);
- if((dsid = H5Dcreate2(loc_id, "dset_none", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) {
- H5Tclose(dtid);
- goto out;
- }
- H5Tclose(dtid);
- H5Dclose(dsid);
-
- /*-------------------------------------------------------------------------
- * close space and dcpl
- *-------------------------------------------------------------------------
- */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_all_filters
-*
-* Purpose: make a file with all filters
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_all_filters(hid_t loc_id)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t sid; /* dataspace ID */
- hid_t dtid;
- hid_t dsid;
-#if defined (H5_HAVE_FILTER_SZIP)
- unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
- unsigned szip_pixels_per_block=8;
-#endif /* H5_HAVE_FILTER_SZIP */
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- int i, j, n;
-#if defined (H5_HAVE_FILTER_SZIP)
- int szip_can_encode = 0;
-#endif
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- /* set up chunk */
- if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
-
- /* set the shuffle filter */
- if (H5Pset_shuffle(dcpl) < 0)
- goto out;
-
- /* set the checksum filter */
- if (H5Pset_fletcher32(dcpl) < 0)
- goto out;
-
-#if defined (H5_HAVE_FILTER_SZIP)
- if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1)
- {
- szip_can_encode = 1;
- }
- if (szip_can_encode)
- {
- /* set szip data */
- if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
- goto out;
- } else {
- /* WARNING? SZIP is decoder only, can't generate test data using szip */
- }
-#endif
-
-#if defined (H5_HAVE_FILTER_DEFLATE)
- /* set deflate data */
- if(H5Pset_deflate(dcpl, 9) < 0)
- goto out;
-#endif
-
- if (make_dset(loc_id,"dset_all",sid,dcpl,buf) < 0)
- goto out;
-
- /* remove the filters from the dcpl */
- if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
- goto out;
- /* set the checksum filter */
- if (H5Pset_fletcher32(dcpl) < 0)
- goto out;
- if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0)
- goto out;
-
-
- /* Make sure encoding is enabled */
-#if defined (H5_HAVE_FILTER_SZIP)
- if (szip_can_encode)
- {
- /* remove the filters from the dcpl */
- if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
- goto out;
- /* set szip data */
- if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0)
- goto out;
- if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0)
- goto out;
- } else
- {
- /* WARNING? SZIP is decoder only, can't generate test dataset */
- }
-#endif
-
-
- /* remove the filters from the dcpl */
- if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
- goto out;
- /* set the shuffle filter */
- if (H5Pset_shuffle(dcpl) < 0)
- goto out;
- if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0)
- goto out;
-
-
-#if defined (H5_HAVE_FILTER_DEFLATE)
- /* remove the filters from the dcpl */
- if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0)
- goto out;
- /* set deflate data */
- if(H5Pset_deflate(dcpl, 1) < 0)
- goto out;
- if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0)
- goto out;
-#endif
-
-
-
- /* remove the filters from the dcpl */
- if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0)
- goto out;
- /* set the shuffle filter */
- if (H5Pset_nbit(dcpl) < 0)
- goto out;
- if ((dtid = H5Tcopy(H5T_NATIVE_INT)) < 0)
- goto out;
- if (H5Tset_precision(dtid, (H5Tget_precision(dtid) - 1)) < 0)
- goto out;
- if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
- goto out;
-
- /* close */
- if(H5Tclose(dtid) < 0)
- return -1;
- if(H5Dclose(dsid) < 0)
- return -1;
-
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-
-/*-------------------------------------------------------------------------
-* Function: make_early
-*
-* Purpose: create a file for the H5D_ALLOC_TIME_EARLY test
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_early(void)
-{
- hsize_t dims[1] ={3000};
- hsize_t cdims[1]={30};
- hid_t fid=-1;
- hid_t did=-1;
- hid_t sid=-1;
- hid_t tid=-1;
- hid_t dcpl=-1;
- int i;
- char name[10];
- int iter=100;
-
- if ((fid = H5Fcreate(FNAME5, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- return -1;
- if (H5Fclose(fid) < 0)
- goto out;
-
- if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
- goto out;
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- if (H5Pset_chunk(dcpl, 1, cdims) < 0)
- goto out;
- if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
- goto out;
-
- for(i = 0; i < iter; i++)
- {
- if ((fid = H5Fopen(FNAME5, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
- goto out;
- if ((did = H5Dcreate2(fid, "early", H5T_NATIVE_DOUBLE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
- goto out;
- if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0)
- goto out;
- sprintf(name, "%d", i);
- if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Ldelete(fid, "early", H5P_DEFAULT) < 0)
- goto out;
- if (H5Fclose(fid) < 0)
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * do the same without close/opening the file and creating the dataset
- *-------------------------------------------------------------------------
- */
-
- if ((fid = H5Fcreate(FNAME6, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- return -1;
-
- for(i = 0; i < iter; i++)
- {
- if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0)
- goto out;
- sprintf(name, "%d", i);
- if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- }
-
- if (H5Sclose(sid) < 0)
- goto out;
- if (H5Pclose(dcpl) < 0)
- goto out;
- if (H5Fclose(fid) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Tclose(tid);
- H5Pclose(dcpl);
- H5Sclose(sid);
- H5Dclose(did);
- H5Fclose(fid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_layout
-*
-* Purpose: make several datasets with several layouts in location LOC_ID
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_layout(hid_t loc_id)
-{
- hid_t dcpl=-1; /* dataset creation property list */
- hid_t sid=-1; /* dataspace ID */
- hsize_t dims[RANK]={DIM1,DIM2};
- hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
- int buf[DIM1][DIM2];
- int i, j, n;
- char name[6];
-
-
- for (i=n=0; i<DIM1; i++)
- {
- for (j=0; j<DIM2; j++)
- {
- buf[i][j]=n++;
- }
- }
-
- /*-------------------------------------------------------------------------
- * make several dataset with no filters
- *-------------------------------------------------------------------------
- */
- for (i=0; i<4; i++)
- {
- sprintf(name,"dset%d",i+1);
- if (write_dset(loc_id,RANK,dims,name,H5T_NATIVE_INT,buf) < 0)
- return -1;
- }
-
-
- /*-------------------------------------------------------------------------
- * make several dataset with several layout options
- *-------------------------------------------------------------------------
- */
- /* create a space */
- if((sid = H5Screate_simple(RANK, dims, NULL)) < 0)
- return -1;
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- {
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * H5D_COMPACT
- *-------------------------------------------------------------------------
- */
- if(H5Pset_layout (dcpl,H5D_COMPACT) < 0)
- goto out;
- if (make_dset(loc_id,"dset_compact",sid,dcpl,buf) < 0)
- {
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * H5D_CONTIGUOUS
- *-------------------------------------------------------------------------
- */
- if(H5Pset_layout (dcpl,H5D_CONTIGUOUS) < 0)
- goto out;
- if (make_dset(loc_id,"dset_contiguous",sid,dcpl,buf) < 0)
- {
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * H5D_CHUNKED
- *-------------------------------------------------------------------------
- */
- if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0)
- goto out;
- if (make_dset(loc_id,"dset_chunk",sid,dcpl,buf) < 0)
- {
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * close space and dcpl
- *-------------------------------------------------------------------------
- */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Pclose(dcpl);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-/*-------------------------------------------------------------------------
- * Function: make_layout2
- *
- * Purpose: create datasets with contiguous and chunked layouts:
- *
- * contig_small: < 1k, fixed dims datspace
- * chunked_small_fixed: < 1k, fixed dims dataspace
- *
- *-------------------------------------------------------------------------
- */
-#define S_DIM1 4
-#define S_DIM2 10
-#define CONTIG_S "contig_small"
-#define CHUNKED_S_FIX "chunked_small_fixed"
-
-static
-int make_layout2(hid_t loc_id)
-{
-
- hid_t contig_dcpl = -1; /* dataset creation property list */
- hid_t chunked_dcpl = -1; /* dataset creation property list */
-
- int i, j, n; /* Local index variables */
- int ret_value = -1; /* Return value */
- hid_t s_sid = -1; /* dataspace ID */
-
- hsize_t s_dims[RANK] = {S_DIM1,S_DIM2}; /* Dataspace (< 1 k) */
- hsize_t chunk_dims[RANK] = {S_DIM1/2, S_DIM2/2}; /* Dimension sizes for chunks */
-
- int s_buf[S_DIM1][S_DIM2]; /* Temporary buffer */
-
- for(i = n = 0; i < S_DIM1; i++) {
- for (j = 0; j < S_DIM2; j++) {
- s_buf[i][j] = n++;
- }
- }
-
- /* Create dataspaces */
- if((s_sid = H5Screate_simple(RANK, s_dims, NULL)) < 0)
- goto out;
-
- /* Create contiguous datasets */
- if((contig_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- if(H5Pset_layout(contig_dcpl, H5D_CONTIGUOUS) < 0)
- goto out;
- if(make_dset(loc_id, CONTIG_S, s_sid, contig_dcpl, s_buf) < 0)
- goto out;
-
- /* Create chunked datasets */
- if((chunked_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- if(H5Pset_chunk(chunked_dcpl, RANK, chunk_dims) < 0)
- goto out;
- if(make_dset(loc_id, CHUNKED_S_FIX, s_sid, chunked_dcpl, s_buf) < 0)
- goto out;
-
- ret_value = 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(contig_dcpl);
- H5Pclose(chunked_dcpl);
-
- H5Sclose(s_sid);
-
- } H5E_END_TRY;
-
- return(ret_value);
-
-} /* make_layout2() */
-
-/*-------------------------------------------------------------------------
-* Function: make_layout3
-*
-* Purpose: make chunked datasets with unlimited max dim and chunk dim is
-* bigger than current dim. (HDFFV-7933)
-* Test for converting chunk to chunk , chunk to conti and chunk
-* to compact.
-* - The chunk to chunk changes layout bigger than any current dim
-* again.
-* - The chunk to compact test dataset bigger than 64K, should
-* remain original layout.*
-*
-*-------------------------------------------------------------------------
-*/
-#define DIM1_L3 300
-#define DIM2_L3 200
-/* small size */
-#define SDIM1_L3 4
-#define SDIM2_L3 50
-static
-int make_layout3(hid_t loc_id)
-{
- hid_t dcpl1=-1; /* dataset creation property list */
- hid_t dcpl2=-1; /* dataset creation property list */
- hid_t dcpl3=-1; /* dataset creation property list */
- hid_t sid1=-1; /* dataspace ID */
- hid_t sid2=-1; /* dataspace ID */
- hsize_t dims1[RANK]={DIM1_L3,DIM2_L3};
- hsize_t dims2[RANK]={SDIM1_L3,SDIM2_L3};
- hsize_t maxdims[RANK]={H5S_UNLIMITED, H5S_UNLIMITED};
- hsize_t chunk_dims1[RANK]={DIM1_L3*2,5};
- hsize_t chunk_dims2[RANK]={SDIM1_L3 + 2, SDIM2_L3/2};
- hsize_t chunk_dims3[RANK]={SDIM1_L3 - 2, SDIM2_L3/2};
- int buf1[DIM1_L3][DIM2_L3];
- int buf2[SDIM1_L3][SDIM2_L3];
- int i, j, n;
-
- /* init buf1 */
- for (i=n=0; i<DIM1_L3; i++)
- {
- for (j=0; j<DIM2_L3; j++)
- {
- buf1[i][j]=n++;
- }
- }
-
- /* init buf2 */
- for (i=n=0; i<SDIM1_L3; i++)
- {
- for (j=0; j<SDIM2_L3; j++)
- {
- buf2[i][j]=n++;
- }
- }
-
- /*-------------------------------------------------------------------------
- * make chunked dataset with
- * - dset maxdims are UNLIMIT
- * - a chunk dim is bigger than dset dim
- * - dset size bigger than compact max (64K)
- *-------------------------------------------------------------------------
- */
- /* create a space */
- if((sid1 = H5Screate_simple(RANK, dims1, maxdims)) < 0)
- return -1;
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl1 = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- {
- goto out;
- }
-
- if(H5Pset_chunk(dcpl1, RANK, chunk_dims1) < 0)
- goto out;
- if (make_dset(loc_id,"chunk_unlimit1",sid1,dcpl1,buf1) < 0)
- {
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * make chunked dataset with
- * - dset maxdims are UNLIMIT
- * - a chunk dim is bigger than dset dim
- * - dset size smaller than compact (64K)
- *-------------------------------------------------------------------------
- */
-
- /* create a space */
- if((sid2 = H5Screate_simple(RANK, dims2, maxdims)) < 0)
- return -1;
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl2 = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
-
- if(H5Pset_chunk(dcpl2, RANK, chunk_dims2) < 0)
- goto out;
-
- if (make_dset(loc_id,"chunk_unlimit2",sid2,dcpl2,buf2) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * make chunked dataset with
- * - dset maxdims are UNLIMIT
- * - a chunk dims are smaller than dset dims
- * - dset size smaller than compact (64K)
- *-------------------------------------------------------------------------
- */
- /* create a dataset creation property list; the same DCPL is used for all dsets */
- if ((dcpl3 = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
-
- if(H5Pset_chunk(dcpl3, RANK, chunk_dims3) < 0)
- goto out;
-
- if (make_dset(loc_id,"chunk_unlimit3",sid2,dcpl3,buf2) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * close space and dcpl
- *-------------------------------------------------------------------------
- */
- if(H5Sclose(sid1) < 0)
- goto out;
- if(H5Sclose(sid2) < 0)
- goto out;
- if(H5Pclose(dcpl1) < 0)
- goto out;
- if(H5Pclose(dcpl2) < 0)
- goto out;
- if(H5Pclose(dcpl3) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Sclose(sid1);
- H5Sclose(sid2);
- H5Pclose(dcpl1);
- H5Pclose(dcpl2);
- H5Pclose(dcpl3);
- } H5E_END_TRY;
- return -1;
-}
-
-/*-------------------------------------------------------------------------
-* Function: make a file with an integer dataset with a fill value
-*
-* Purpose: test copy of fill values
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_fill(hid_t loc_id)
-{
- hid_t did=-1;
- hid_t sid=-1;
- hid_t dcpl;
- hsize_t dims[2]={3,2};
- int buf[3][2]= {{1,1},{1,2},{2,2}};
- int fillvalue = 2;
-
- /*-------------------------------------------------------------------------
- * H5T_INTEGER, write a fill value
- *-------------------------------------------------------------------------
- */
- if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue) < 0)
- goto out;
- if((sid = H5Screate_simple(2,dims,NULL)) < 0)
- goto out;
- if((did = H5Dcreate2(loc_id, "dset_fill", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
- goto out;
-
- /* close */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
- if(H5Dclose(did) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(sid);
- H5Dclose(did);
- } H5E_END_TRY;
- return -1;
-
-}
-
-/*-------------------------------------------------------------------------
-* Function: make_big
-*
-* Purpose: used in test read by hyperslabs. Creates a 128MB dataset.
-* Only 1 1024Kb hyperslab is written.
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_big(hid_t loc_id)
-{
- hid_t did=-1;
- hid_t f_sid=-1;
- hid_t m_sid=-1;
- hid_t tid;
- hid_t dcpl;
- hsize_t dims[1]={ H5TOOLS_MALLOCSIZE + 1}; /* dataset dimensions */
- hsize_t hs_size[1]; /* hyperslab dimensions */
- hsize_t hs_start[1]; /* hyperslab start */
- hsize_t chunk_dims[1]={1024}; /* chunk dimensions */
- size_t size;
- size_t nelmts=(size_t)1024;
- signed char fillvalue=-1;
- signed char *buf=NULL;
-
- /* write one 1024 byte hyperslab */
- hs_start[0] = 0;
- hs_size[0] = 1024;
-
- /* create */
- if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- if(H5Pset_fill_value(dcpl, H5T_NATIVE_SCHAR, &fillvalue) < 0)
- goto out;
- if(H5Pset_chunk(dcpl, 1, chunk_dims) < 0)
- goto out;
- if((f_sid = H5Screate_simple(1,dims,NULL)) < 0)
- goto out;
- if((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_SCHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
- goto out;
- if((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0)
- goto out;
- if((tid = H5Dget_type(did)) < 0)
- goto out;
- if((size = H5Tget_size(tid))<=0)
- goto out;
-
- /* initialize buffer to 0 */
- buf=(signed char *) HDcalloc( nelmts, size);
-
- if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0)
- goto out;
- if (H5Dwrite (did,H5T_NATIVE_SCHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0)
- goto out;
-
- HDfree(buf);
- buf=NULL;
-
- /* close */
- if(H5Sclose(f_sid) < 0)
- goto out;
- if(H5Sclose(m_sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
- if(H5Dclose(did) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(dcpl);
- H5Sclose(f_sid);
- H5Sclose(m_sid);
- H5Dclose(did);
- } H5E_END_TRY;
- return -1;
-
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_external
-*
-* Purpose: create a external dataset
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_external(hid_t loc_id)
-{
- hid_t did=-1;
- hid_t sid=-1;
- hid_t dcpl;
- int buf[2]={1,2};
- hsize_t cur_size[1]; /* data space current size */
- hsize_t max_size[1]; /* data space maximum size */
- hsize_t size;
-
- cur_size[0] = max_size[0] = 2;
- size = max_size[0] * sizeof(int);
-
- /* create */
- if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- if(H5Pset_external(dcpl, H5REPACK_EXTFILE, (off_t)0, size) < 0)
- goto out;
- if((sid = H5Screate_simple(1,cur_size, max_size)) < 0)
- goto out;
- if((did = H5Dcreate2(loc_id, "external", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
- goto out;
-
- /* close */
- if(H5Sclose(sid) < 0)
- goto out;
- if(H5Pclose(dcpl) < 0)
- goto out;
- if(H5Dclose(did) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Pclose(dcpl);
- H5Sclose(sid);
- H5Dclose(did);
- } H5E_END_TRY;
- return -1;
-
-}
-
-/*-------------------------------------------------------------------------
-* Function: make_userblock
-*
-* Purpose: create a file for the userblock copying test
-*
-*-------------------------------------------------------------------------
-*/
-static int
-make_userblock(void)
-{
- hid_t fid = -1;
- hid_t fcpl = -1;
- int fd = -1; /* File descriptor for writing userblock */
- char ub[USERBLOCK_SIZE]; /* User block data */
- ssize_t nwritten; /* # of bytes written */
- size_t u; /* Local index variable */
-
- /* Create file creation property list with userblock set */
- if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
- goto out;
- if(H5Pset_userblock(fcpl, (hsize_t)USERBLOCK_SIZE) < 0)
- goto out;
-
- /* Create file with userblock */
- if((fid = H5Fcreate(FNAME16, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Fclose(fid) < 0)
- goto out;
-
- /* Close file creation property list */
- if(H5Pclose(fcpl) < 0)
- goto out;
-
-
- /* Initialize userblock data */
- for(u = 0; u < USERBLOCK_SIZE; u++)
- ub[u] = (char)('a' + (char)(u % 26));
-
- /* Re-open HDF5 file, as "plain" file */
- if((fd = HDopen(FNAME16, O_WRONLY, 0644)) < 0)
- goto out;
-
- /* Write userblock data */
- nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE);
- HDassert(nwritten == USERBLOCK_SIZE);
-
- /* Close file */
- HDclose(fd);
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(fcpl);
- H5Fclose(fid);
- } H5E_END_TRY;
- if(fd > 0)
- HDclose(fd);
-
- return -1;
-} /* end make_userblock() */
-
-/*-------------------------------------------------------------------------
-* Function: verify_userblock
-*
-* Purpose: Verify that the userblock was copied correctly
-*
-*-------------------------------------------------------------------------
-*/
-static int
-verify_userblock( const char* filename)
-{
- hid_t fid = -1;
- hid_t fcpl = -1;
- int fd = -1; /* File descriptor for writing userblock */
- char ub[USERBLOCK_SIZE]; /* User block data */
- hsize_t ub_size = 0; /* User block size */
- ssize_t nread; /* # of bytes read */
- size_t u; /* Local index variable */
-
- /* Open file with userblock */
- if((fid = H5Fopen(filename, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Retrieve file creation property list & userblock size */
- if((fcpl = H5Fget_create_plist(fid)) < 0)
- goto out;
- if(H5Pget_userblock(fcpl, &ub_size) < 0)
- goto out;
-
- /* Verify userblock size is correct */
- if(ub_size != USERBLOCK_SIZE)
- goto out;
-
- /* Close file creation property list */
- if(H5Pclose(fcpl) < 0)
- goto out;
-
- if(H5Fclose(fid) < 0)
- goto out;
-
-
- /* Re-open HDF5 file, as "plain" file */
- if((fd = HDopen(filename, O_RDONLY, 0)) < 0)
- goto out;
-
- /* Read userblock data */
- nread = HDread(fd, ub, (size_t)USERBLOCK_SIZE);
- HDassert(nread == USERBLOCK_SIZE);
-
- /* Verify userblock data */
- for(u = 0; u < USERBLOCK_SIZE; u++)
- if(ub[u] != (char)('a' + (u % 26)))
- goto out;
-
- /* Close file */
- HDclose(fd);
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(fcpl);
- H5Fclose(fid);
- } H5E_END_TRY;
- if(fd > 0)
- HDclose(fd);
-
- return -1;
-} /* end verify_userblock() */
-
-
-/*-------------------------------------------------------------------------
-* Function: make_userblock_file
-*
-* Purpose: create a file for the userblock add test
-*
-*-------------------------------------------------------------------------
-*/
-static int
-make_userblock_file(void)
-{
- int fd = -1; /* File descriptor for writing userblock */
- char ub[USERBLOCK_SIZE]; /* User block data */
- ssize_t nwritten; /* # of bytes written */
- size_t u; /* Local index variable */
-
- /* initialize userblock data */
- for(u = 0; u < USERBLOCK_SIZE; u++)
- ub[u] = (char)('a' + (char)(u % 26));
-
- /* open file */
- if((fd = HDopen(FNAME_UB,O_WRONLY|O_CREAT|O_TRUNC, 0644 )) < 0)
- goto out;
-
- /* write userblock data */
- nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE);
- HDassert(nwritten == USERBLOCK_SIZE);
-
- /* close file */
- HDclose(fd);
-
- return 0;
-
-out:
-
- if(fd > 0)
- HDclose(fd);
-
- return -1;
-}
-
-/*-------------------------------------------------------------------------
-* Function: write_dset_in
-*
-* Purpose: write datasets in LOC_ID
-*
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
-*
-* Date: November 12, 2003
-*
-*-------------------------------------------------------------------------
-*/
-static
-int write_dset_in(hid_t loc_id,
- const char* dset_name, /* for saving reference to dataset*/
- hid_t file_id,
- int make_diffs /* flag to modify data buffers */)
-{
- /* compound datatype */
- typedef struct s_t
- {
- char a;
- double b;
- } s_t;
-
- typedef enum
- {
- RED,
- GREEN
- } e_t;
-
- hid_t did=-1;
- hid_t sid=-1;
- hid_t tid=-1;
- hid_t pid=-1;
- unsigned i, j;
- int val, k, n;
- float f;
-
- /* create 1D attributes with dimension [2], 2 elements */
- hsize_t dims[1]={2};
- hsize_t dims1r[1]={2};
- char buf1[2][3]= {"ab","de"}; /* string */
- char buf2[2]= {1,2}; /* bitfield, opaque */
- s_t buf3[2]= {{1,2},{3,4}}; /* compound */
- hobj_ref_t buf4[2]; /* reference */
- e_t buf45[2]= {RED,GREEN}; /* enum */
- hvl_t buf5[2]; /* vlen */
- hsize_t dimarray[1]={3}; /* array dimension */
- int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
- int buf7[2]= {1,2}; /* integer */
- float buf8[2]= {1,2}; /* float */
-
- /* create 2D attributes with dimension [3][2], 6 elements */
- hsize_t dims2[2]={3,2};
- hsize_t dims2r[2]={1,1};
- char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */
- char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
- s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
- hobj_ref_t buf42[1][1]; /* reference */
- hvl_t buf52[3][2]; /* vlen */
- int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
- int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
- float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
-
- /* create 3D attributes with dimension [4][3][2], 24 elements */
- hsize_t dims3[3]={4,3,2};
- hsize_t dims3r[3]={1,1,1};
- char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq",
- "rs","tu","vw","xz","AB","CD","EF","GH",
- "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
- char buf23[4][3][2]; /* bitfield, opaque */
- s_t buf33[4][3][2]; /* compound */
- hobj_ref_t buf43[1][1][1]; /* reference */
- hvl_t buf53[4][3][2]; /* vlen */
- int buf63[24][3]; /* array */
- int buf73[4][3][2]; /* integer */
- float buf83[4][3][2]; /* float */
-
-
- /*-------------------------------------------------------------------------
- * 1D
- *-------------------------------------------------------------------------
- */
-
- /*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
-
- if(make_diffs) {
- for(i = 0; i < 2; i++)
- for(j = 0; j < 2; j++)
- buf1[i][j] = 'z';
- }
-
-
- if ((tid = H5Tcopy(H5T_C_S1)) < 0)
- goto out;
- if (H5Tset_size(tid, (size_t)2) < 0)
- goto out;
- if (write_dset(loc_id,1,dims,"string",tid,buf1) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
-
- /* create hard link */
- if (H5Lcreate_hard(loc_id, "string", H5L_SAME_LOC, "string_link", H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
- if(make_diffs) {
- for(i = 0; i < 2; i++)
- buf2[i] = buf2[1] = 0;
- }
-
- if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
- goto out;
- if (write_dset(loc_id,1,dims,"bitfield",tid,buf2) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
-
- if(make_diffs) {
- for(i = 0; i < 2; i++) {
- buf3[i].a = 0;
- buf3[i].b = 0;
- }
- }
-
- if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
- goto out;
- if (H5Tset_tag(tid, "1-byte opaque type") < 0)
- goto out;
- if (write_dset(loc_id,1,dims,"opaque",tid,buf2) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
-
- if(make_diffs) {
- for(i = 0; i < 2; i++)
- buf45[i] = GREEN;
- }
-
- if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
- goto out;
- if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
- goto out;
- if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
- goto out;
- if (write_dset(loc_id,1,dims,"compound",tid,buf3) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* object references ( H5R_OBJECT ) */
- buf4[0]=0;
- buf4[1]=0;
- if (dset_name)
- {
- if (H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,(hid_t)-1) < 0)
- goto out;
- if (write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4) < 0)
- goto out;
- }
-
- /* Dataset region reference ( H5R_DATASET_REGION ) */
- if (make_dset_reg_ref(loc_id) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
- if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
- goto out;
- if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
- goto out;
- if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
- goto out;
- if (write_dset(loc_id,1,dims,"enum",tid,buf45) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
-
- buf5[0].len = 1;
- buf5[0].p = HDmalloc( 1 * sizeof(int));
- ((int *)buf5[0].p)[0]=1;
- buf5[1].len = 2;
- buf5[1].p = HDmalloc( 2 * sizeof(int));
- ((int *)buf5[1].p)[0] = 2;
- ((int *)buf5[1].p)[1] = 3;
-
- if(make_diffs) {
- ((int *)buf5[0].p)[0] = 0;
- ((int *)buf5[1].p)[0] = 0;
- ((int *)buf5[1].p)[1] = 0;
- }
-
- if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
- goto out;
- if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5) < 0)
- goto out;
- if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0)
- goto out;
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
- if(make_diffs) {
- for(i = 0; i < 2; i++)
- for(j = 0; j < 3; j++)
- buf6[i][j] = 0;
- }
-
- if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
- goto out;
- if (write_dset(loc_id, 1, dims, "array", tid, buf6) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- {
-
- hsize_t TEST_BUFSIZE = (128 * 1024 * 1024); /* 128MB */
- double *dbuf; /* information to write */
- size_t size;
- hsize_t sdims[] = {1};
- hsize_t tdims[] = {TEST_BUFSIZE / sizeof(double) + 1};
- unsigned u;
-
- /* allocate and initialize array data to write */
- size = ( TEST_BUFSIZE / sizeof(double) + 1 ) * sizeof(double);
- dbuf = (double*)HDmalloc( size );
- if (NULL == dbuf)
- {
- printf ("\nError: Cannot allocate memory for \"arrayd\" data buffer size %dMB.\n", (int) size / 1000000 );
- goto out;
- }
-
- for( u = 0; u < TEST_BUFSIZE / sizeof(double) + 1; u++)
- dbuf[u] = u;
-
- if (make_diffs)
- {
- dbuf[5] = 0;
- dbuf[6] = 0;
- }
-
- /* create a type larger than TEST_BUFSIZE */
- if ((tid = H5Tarray_create2(H5T_NATIVE_DOUBLE, 1, tdims)) < 0)
- goto out;
- size = H5Tget_size(tid);
- if ((sid = H5Screate_simple(1, sdims, NULL)) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "arrayd", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-#if defined(WRITE_ARRAY)
- H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, dbuf);
-#endif
-
- /* close */
- H5Dclose(did);
- H5Tclose(tid);
- H5Sclose(sid);
- HDfree( dbuf );
- }
-
- /*-------------------------------------------------------------------------
- * H5T_INTEGER and H5T_FLOAT
- *-------------------------------------------------------------------------
- */
-
- if(make_diffs) {
- for(i = 0; i < 2; i++) {
- buf7[i] = 0;
- buf8[i] = 0;
- }
- }
-
- if (write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0)
- goto out;
- if (write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * 2D
- *-------------------------------------------------------------------------
- */
-
- /*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- HDmemset(buf12, 'z', sizeof buf12);
- }
-
-
- if ((tid = H5Tcopy(H5T_C_S1)) < 0)
- goto out;
- if (H5Tset_size(tid, (size_t)2) < 0)
- goto out;
- if (write_dset(loc_id,2,dims2,"string2D",tid,buf12) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
-
- if (make_diffs)
- {
- HDmemset(buf22,0,sizeof buf22);
- }
-
- if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
- goto out;
- if (write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
- if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
- goto out;
- if (H5Tset_tag(tid, "1-byte opaque type") < 0)
- goto out;
- if (write_dset(loc_id,2,dims2,"opaque2D",tid,buf22) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- HDmemset(buf32,0,sizeof buf32);
- }
-
- if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
- goto out;
- if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
- goto out;
- if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
- goto out;
- if (write_dset(loc_id,2,dims2,"compound2D",tid,buf32) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* Create references to dataset */
- if (dset_name)
- {
- if (H5Rcreate(&buf42[0][0], file_id, dset_name, H5R_OBJECT, (hid_t)-1) < 0)
- goto out;
- if (write_dset(loc_id, 2, dims2r, "refobj2D", H5T_STD_REF_OBJ, buf42) < 0)
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
-
- if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
- goto out;
- if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
- goto out;
- if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
- goto out;
- if (write_dset(loc_id,2,dims2,"enum2D",tid,0) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
- n = 0;
- for(i = 0; i < 3; i++) {
- for(j = 0; j < 2; j++) {
- unsigned l;
-
- buf52[i][j].p = HDmalloc((i + 1) * sizeof(int));
- buf52[i][j].len = (size_t)(i + 1);
- for(l = 0; l < i + 1; l++) {
- if(make_diffs)
- ((int *)buf52[i][j].p)[l] = 0;
- else
- ((int *)buf52[i][j].p)[l] = n++;
- }
- }
- }
-
- if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
- goto out;
- if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf52) < 0)
- goto out;
- if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0)
- goto out;
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- HDmemset(buf62,0,sizeof buf62);
- }
-
-
- if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
- goto out;
- if (write_dset(loc_id, 2, dims2, "array2D", tid, buf62) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_INTEGER, write a fill value
- *-------------------------------------------------------------------------
- */
-
-
- if(make_diffs) {
- HDmemset(buf72, 0, sizeof buf72);
- HDmemset(buf82, 0, sizeof buf82);
- }
-
-
- if ((pid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- goto out;
- if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "integer2D", H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf72) < 0)
- goto out;
- if (H5Pclose(pid) < 0)
- goto out;
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_FLOAT
- *-------------------------------------------------------------------------
- */
-
- if (write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * 3D
- *-------------------------------------------------------------------------
- */
-
- /*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- HDmemset(buf13,'z',sizeof buf13);
- }
-
- if ((tid = H5Tcopy(H5T_C_S1)) < 0)
- goto out;
- if (H5Tset_size(tid, (size_t)2) < 0)
- goto out;
- if (write_dset(loc_id,3,dims3,"string3D",tid,buf13) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
-
- n=1;
- for(i = 0; i < 4; i++) {
- for(j = 0; j < 3; j++) {
- for(k = 0; k < 2; k++) {
- if(make_diffs)
- buf23[i][j][k] = 0;
- else
- buf23[i][j][k] = (char)(n++);
- }
- }
- }
-
-
- if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
- goto out;
- if (write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
- if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
- goto out;
- if (H5Tset_tag(tid, "1-byte opaque type") < 0)
- goto out;
- if (write_dset(loc_id,3,dims3,"opaque3D",tid,buf23) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
- n=1;
- for(i = 0; i < 4; i++) {
- for(j = 0; j < 3; j++) {
- for(k = 0; k < 2; k++) {
- if(make_diffs) {
- buf33[i][j][k].a = 0;
- buf33[i][j][k].b = 0;
- }
- else {
- buf33[i][j][k].a = (char)(n++);
- buf33[i][j][k].b = n++;
- }
- }
- }
- }
-
-
- if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
- goto out;
- if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
- goto out;
- if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
- goto out;
- if (write_dset(loc_id,3,dims3,"compound3D",tid,buf33) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* Create references to dataset */
- if (dset_name)
- {
- if (H5Rcreate(&buf43[0][0][0], file_id, dset_name, H5R_OBJECT, (hid_t)-1) < 0)
- goto out;
- if (write_dset(loc_id, 3, dims3r, "refobj3D", H5T_STD_REF_OBJ, buf43) < 0)
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
-
- if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
- goto out;
- if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
- goto out;
- if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
- goto out;
- if (write_dset(loc_id,3,dims3,"enum3D",tid,0) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
- n = 0;
- for(i = 0; i < 4; i++) {
- for(j = 0; j < 3; j++) {
- for(k = 0; k < 2; k++) {
- unsigned l;
-
- buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int));
- buf53[i][j][k].len = (size_t)(i + 1);
- for(l = 0; l < i + 1; l++) {
- if(make_diffs)
- ((int *)buf53[i][j][k].p)[l] = 0;
- else
- ((int *)buf53[i][j][k].p)[l] = n++;
- }
- }
- }
- }
-
- if ((sid = H5Screate_simple(3, dims3, NULL)) < 0)
- goto out;
- if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf53) < 0)
- goto out;
-
- if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0)
- goto out;
-
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
-
- n = 1;
- for(i = 0; i < 24; i++) {
- for(j = 0; j < dimarray[0]; j++) {
- if(make_diffs)
- buf63[i][j] = 0;
- else
- buf63[i][j] = n++;
- }
- }
-
- if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
- goto out;
- if (write_dset(loc_id, 3, dims3, "array3D", tid, buf63) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * H5T_INTEGER and H5T_FLOAT
- *-------------------------------------------------------------------------
- */
- n=1; f=1;
- for (i = 0; i < 4; i++) {
- for (j = 0; j < 3; j++) {
- for (k = 0; k < 2; k++) {
- if (make_diffs) {
- buf73[i][j][k]=0;
- buf83[i][j][k]=0;
- }
- else {
- buf73[i][j][k]=n++;
- buf83[i][j][k]=f++;
- }
- }
- }
- }
- if (write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0)
- goto out;
- if (write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Pclose(pid);
- H5Sclose(sid);
- H5Dclose(did);
- H5Tclose(tid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-
-/*-------------------------------------------------------------------------
-* Function: make_dset_reg_ref
-*
-* Purpose: write dataset region references
-*
-*-------------------------------------------------------------------------
-*/
-
-#define SPACE1_RANK 1
-#define SPACE1_DIM1 1
-#define SPACE2_RANK 2
-#define SPACE2_DIM1 10
-#define SPACE2_DIM2 10
-static
-int make_dset_reg_ref(hid_t loc_id)
-{
- hid_t did1=-1; /* Dataset ID */
- hid_t did2=-1; /* Dereferenced dataset ID */
- hid_t sid1=-1; /* Dataspace ID #1 */
- hid_t sid2=-1; /* Dataspace ID #2 */
- hsize_t dims1[] = {SPACE1_DIM1};
- hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
- hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
- hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
- hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
- hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
- hdset_reg_ref_t *wbuf=NULL; /* buffer to write to disk */
- int *dwbuf=NULL; /* Buffer for writing numeric data to disk */
- int i; /* counting variables */
- int retval = -1; /* return value */
-
- /* Allocate write & read buffers */
- wbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
- dwbuf = (int *)HDmalloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2);
-
- /* Create dataspace for datasets */
- if ((sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL)) < 0)
- goto out;
-
- /* Create a dataset */
- if ((did2 = H5Dcreate2(loc_id, "dsetreg", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- for (i = 0; i < SPACE2_DIM1 * SPACE2_DIM2; i++)
- dwbuf[i] = i * 3;
-
- /* Write selection to disk */
- if (H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf) < 0)
- goto out;
-
- /* Create dataspace for the reference dataset */
- if ((sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL)) < 0)
- goto out;
-
- /* Create a dataset */
- if ((did1 = H5Dcreate2(loc_id, "refreg", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Select 6x6 hyperslab for first reference */
- start[0] = 2; start[1] = 2;
- stride[0] = 1; stride[1] = 1;
- count[0] = 6; count[1] = 6;
- block[0] = 1; block[1] = 1;
- if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block) < 0)
- goto out;
-
-
- /* Store dataset region */
- if (H5Rcreate(&wbuf[0], loc_id, "dsetreg", H5R_DATASET_REGION, sid2) < 0)
- goto out;
-
- /* Write selection to disk */
- if (H5Dwrite(did1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf) < 0)
- goto out;
-
- /* Close all objects */
- if (H5Sclose(sid1) < 0)
- goto out;
- if (H5Dclose(did1) < 0)
- goto out;
- if (H5Sclose(sid2) < 0)
- goto out;
- if (H5Dclose(did2) < 0)
- goto out;
-
- retval = 0;
-
-out:
- if(wbuf)
- HDfree(wbuf);
- if(dwbuf)
- HDfree(dwbuf);
-
- H5E_BEGIN_TRY
- {
- H5Sclose(sid1);
- H5Sclose(sid2);
- H5Dclose(did1);
- H5Dclose(did2);
- } H5E_END_TRY;
-
- return retval;
-}
-
-/*-------------------------------------------------------------------------
-* Function: write_attr_in
-*
-* Purpose: write attributes in LOC_ID (dataset, group, named datatype)
-*
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
-*
-* Date: November 12, 2003
-*
-*-------------------------------------------------------------------------
-*/
-
-static
-int write_attr_in(hid_t loc_id,
- const char* dset_name, /* for saving reference to dataset*/
- hid_t fid, /* for reference create */
- int make_diffs /* flag to modify data buffers */)
-{
- /* Compound datatype */
- typedef struct s_t
- {
- char a;
- double b;
- } s_t;
-
- typedef enum
- {
- RED,
- GREEN
- } e_t;
-
- hid_t aid = -1;
- hid_t sid = -1;
- hid_t tid = -1;
- int val, j, k, n;
- unsigned i;
- float f;
-
- /* create 1D attributes with dimension [2], 2 elements */
- hsize_t dims[1]={2};
- char buf1[2][3]= {"ab","de"}; /* string */
- char buf2[2]= {1,2}; /* bitfield, opaque */
- s_t buf3[2]= {{1,2},{3,4}}; /* compound */
- hobj_ref_t buf4[2]; /* reference */
- e_t buf45[2]= {RED,RED}; /* enum */
- hvl_t buf5[2]; /* vlen */
- hsize_t dimarray[1]={3}; /* array dimension */
- int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
- int buf7[2]= {1,2}; /* integer */
- float buf8[2]= {1,2}; /* float */
-
- /* create 2D attributes with dimension [3][2], 6 elements */
- hsize_t dims2[2]={3,2};
- char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */
- char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
- s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
- hobj_ref_t buf42[3][2]; /* reference */
- e_t buf452[3][2]; /* enum */
- hvl_t buf52[3][2]; /* vlen */
- int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
- int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
- float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
-
- /* create 3D attributes with dimension [4][3][2], 24 elements */
- hsize_t dims3[3]={4,3,2};
- char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq",
- "rs","tu","vw","xz","AB","CD","EF","GH",
- "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
- char buf23[4][3][2]; /* bitfield, opaque */
- s_t buf33[4][3][2]; /* compound */
- hobj_ref_t buf43[4][3][2]; /* reference */
- e_t buf453[4][3][2]; /* enum */
- hvl_t buf53[4][3][2]; /* vlen */
- int buf63[24][3]; /* array */
- int buf73[4][3][2]; /* integer */
- float buf83[4][3][2]; /* float */
-
-
- /*-------------------------------------------------------------------------
- * 1D attributes
- *-------------------------------------------------------------------------
- */
-
- /*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- for (i=0; i<2; i++)
- for (j=0; j<2; j++)
- {
- buf1[i][j]='z';
- }
- }
- /*
- buf1[2][2]= {"ab","de"};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- Attribute: <string> and <string>
- position string of </g1> string of </g1> difference
- ------------------------------------------------------------
- [ 0 ] a z
- [ 0 ] b z
- [ 1 ] d z
- [ 1 ] e z
- */
- if ((tid = H5Tcopy(H5T_C_S1)) < 0)
- goto out;
- if (H5Tset_size(tid, (size_t)2) < 0)
- goto out;
- if (make_attr(loc_id,1,dims,"string",tid,buf1) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- for (i=0; i<2; i++)
- buf2[i]=buf2[1]=0;
- }
- /*
- buf2[2]= {1,2};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- Attribute: <bitfield> and <bitfield>
- position bitfield of </g1> bitfield of </g1> difference
- position opaque of </g1> opaque of </g1> difference
- ------------------------------------------------------------
- [ 0 ] 1 0 1
- [ 1 ] 2 0 2
- */
-
- if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
- goto out;
- if (make_attr(loc_id,1,dims,"bitfield",tid,buf2) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
-
- /*
- buf2[2]= {1,2};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- Attribute: <opaque> and <opaque>
- position opaque of </g1> opaque of </g1> difference
- position opaque of </g1> opaque of </g1> difference
- ------------------------------------------------------------
- [ 0 ] 1 0 1
- [ 1 ] 2 0 2
- */
-
- if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
- goto out;
- if (H5Tset_tag(tid, "1-byte opaque type") < 0)
- goto out;
- if (make_attr(loc_id,1,dims,"opaque",tid,buf2) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- for (i=0; i<2; i++)
- {
- buf3[i].a=0; buf3[i].b=0;
- }
- }
-
- /*
- buf3[2]= {{1,2},{3,4}};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- Attribute: <compound> and <compound>
- position compound of </g1> compound of </g1> difference
- ------------------------------------------------------------
- [ 0 ] 1 5 4
- [ 0 ] 2 5 3
- [ 1 ] 3 5 2
- [ 1 ] 4 5 1
- */
-
- if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
- goto out;
- if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
- goto out;
- if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
- goto out;
- if (make_attr(loc_id,1,dims,"compound",tid,buf3) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* object references ( H5R_OBJECT */
- if (dset_name)
- {
- if (H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0)
- goto out;
- if (H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0)
- goto out;
- if (make_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4) < 0)
- goto out;
- }
-
-
- /*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
- if (make_diffs)
- {
- for (i=0; i<2; i++)
- {
- buf45[i]=GREEN;
- }
- }
- /*
- buf45[2]= {RED,RED};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- Attribute: <enum> and <enum>
- position enum of </g1> enum of </g1> difference
- ------------------------------------------------------------
- [ 0 ] RED GREEN
- [ 1 ] RED GREEN
- */
- if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
- goto out;
- if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
- goto out;
- if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
- goto out;
- if (make_attr(loc_id,1,dims,"enum",tid,buf45) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
-
- buf5[0].len = 1;
- buf5[0].p = HDmalloc( 1 * sizeof(int));
- ((int *)buf5[0].p)[0]=1;
- buf5[1].len = 2;
- buf5[1].p = HDmalloc(2 * sizeof(int));
- ((int *)buf5[1].p)[0] = 2;
- ((int *)buf5[1].p)[1] = 3;
-
- if(make_diffs)
- {
- ((int *)buf5[0].p)[0] = 0;
- ((int *)buf5[1].p)[0] = 0;
- ((int *)buf5[1].p)[1] = 0;
- }
- /*
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- position vlen of </g1> vlen of </g1> difference
- ------------------------------------------------------------
- [ 0 ] 1 0 1
- [ 1 ] 2 0 2
- [ 1 ] 3 0 3
- */
-
- if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
- goto out;
- if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
- goto out;
- if ((aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Awrite(aid, tid, buf5) < 0)
- goto out;
- if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0)
- goto out;
- if (H5Aclose(aid) < 0)
- goto out;
- aid = -1;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
- if (H5Sclose(sid) < 0)
- goto out;
- sid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- for (i=0; i<2; i++)
- for (j=0; j<3; j++)
- {
- buf6[i][j]=0;
- }
- }
- /*
- buf6[2][3]= {{1,2,3},{4,5,6}};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- Attribute: <array> and <array>
- position array of </g1> array of </g1> difference
- ------------------------------------------------------------
- [ 0 ] 1 0 1
- [ 0 ] 2 0 2
- [ 0 ] 3 0 3
- [ 1 ] 4 0 4
- [ 1 ] 5 0 5
- [ 1 ] 6 0 6
- */
- if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
- goto out;
- if (make_attr(loc_id, 1, dims, "array", tid, buf6) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_INTEGER and H5T_FLOAT
- *-------------------------------------------------------------------------
- */
-
- if(make_diffs)
- {
- for(i = 0; i < 2; i++)
- {
- buf7[i]=0;
- buf8[i]=0;
- }
- }
-
- /*
- buf7[2]= {1,2};
- buf8[2]= {1,2};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- position integer of </g1> integer of </g1> difference
- ------------------------------------------------------------
- [ 0 ] 1 0 1
- [ 1 ] 2 0 2
- position float of </g1> float of </g1> difference
- ------------------------------------------------------------
- [ 0 ] 1 0 1
- [ 1 ] 2 0 2
- */
- if (make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0)
- goto out;
- if (make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * 2D attributes
- *-------------------------------------------------------------------------
- */
-
- /*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
- if (make_diffs)
- {
- HDmemset(buf12, 'z', sizeof buf12);
- }
-
- /*
- buf12[6][2]= {"ab","cd","ef","gh","ij","kl"};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Attribute: <string2D> and <string2D>
- position string2D of </g1> string2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] a z
- [ 0 0 ] b z
- [ 0 1 ] c z
- [ 0 1 ] d z
- [ 1 0 ] e z
- [ 1 0 ] f z
- [ 1 1 ] g z
- [ 1 1 ] h z
- [ 2 0 ] i z
- [ 2 0 ] j z
- [ 2 1 ] k z
- [ 2 1 ] l z
- */
-
- if ((tid = H5Tcopy(H5T_C_S1)) < 0)
- goto out;
- if (H5Tset_size(tid, (size_t)2) < 0)
- goto out;
- if (make_attr(loc_id,2,dims2,"string2D",tid,buf12) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- HDmemset(buf22,0,sizeof buf22);
- }
-
- /*
- buf22[3][2]= {{1,2},{3,4},{5,6}};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Attribute: <bitfield2D> and <bitfield2D>
- position bitfield2D of </g1> bitfield2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] 1 0 1
- [ 0 1 ] 2 0 2
- [ 1 0 ] 3 0 3
- [ 1 1 ] 4 0 4
- [ 2 0 ] 5 0 5
- [ 2 1 ] 6 0 6
- */
-
-
- if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
- goto out;
- if (make_attr(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
-
- /*
- buf22[3][2]= {{1,2},{3,4},{5,6}};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Attribute: <opaque2D> and <opaque2D>
- position opaque2D of </g1> opaque2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] 1 0 1
- [ 0 1 ] 2 0 2
- [ 1 0 ] 3 0 3
- [ 1 1 ] 4 0 4
- [ 2 0 ] 5 0 5
- [ 2 1 ] 6 0 6
- */
- if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
- goto out;
- if (H5Tset_tag(tid, "1-byte opaque type") < 0)
- goto out;
- if (make_attr(loc_id,2,dims2,"opaque2D",tid,buf22) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
- if (make_diffs)
- {
- HDmemset(buf32,0,sizeof buf32);
- }
-
- /*
- buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Attribute: <opaque2D> and <opaque2D>
- position opaque2D of </g1> opaque2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] 1 0 1
- [ 0 1 ] 2 0 2
- [ 1 0 ] 3 0 3
- [ 1 1 ] 4 0 4
- [ 2 0 ] 5 0 5
- [ 2 1 ] 6 0 6
- */
-
-
- if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
- goto out;
- if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
- goto out;
- if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
- goto out;
- if (make_attr(loc_id,2,dims2,"compound2D",tid,buf32) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* Create references to dataset */
- if (dset_name)
- {
- for (i = 0; i < 3; i++)
- {
- for (j = 0; j < 2; j++)
- {
- if (H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0)
- goto out;
- }
- }
- if (make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42) < 0)
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
- for (i=0; i<3; i++)
- {
- for (j=0; j<2; j++)
- {
- if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
- }
- }
-
- /*
- Attribute: <enum2D> and <enum2D>
- position enum2D of </g1> enum2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] RED GREEN
- [ 0 1 ] RED GREEN
- [ 1 0 ] RED GREEN
- [ 1 1 ] RED GREEN
- [ 2 0 ] RED GREEN
- [ 2 1 ] RED GREEN
- */
-
- if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
- goto out;
- if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
- goto out;
- if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
- goto out;
- if (make_attr(loc_id,2,dims2,"enum2D",tid,buf452) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
- n=0;
- for(i = 0; i < 3; i++) {
- for(j = 0; j < 2; j++) {
- unsigned l;
-
- buf52[i][j].p = HDmalloc((i + 1) * sizeof(int));
- buf52[i][j].len = (size_t)(i + 1);
- for(l = 0; l < i + 1; l++)
- if(make_diffs)
- ((int *)buf52[i][j].p)[l] = 0;
- else
- ((int *)buf52[i][j].p)[l] = n++;
- }
- }
-
- /*
- position vlen2D of </g1> vlen2D of </g1> difference
- ------------------------------------------------------------
- [ 0 1 ] 1 0 1
- [ 1 0 ] 2 0 2
- [ 1 0 ] 3 0 3
- [ 1 1 ] 4 0 4
- [ 1 1 ] 5 0 5
- [ 2 0 ] 6 0 6
- [ 2 0 ] 7 0 7
- [ 2 0 ] 8 0 8
- [ 2 1 ] 9 0 9
- [ 2 1 ] 10 0 10
- [ 2 1 ] 11 0 11
- */
-
- if ((sid = H5Screate_simple(2, dims2, NULL)) < 0)
- goto out;
- if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
- goto out;
- if ((aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Awrite(aid, tid, buf52) < 0)
- goto out;
- if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0)
- goto out;
- if (H5Aclose(aid) < 0)
- goto out;
- aid = -1;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
- if (H5Sclose(sid) < 0)
- goto out;
- sid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- HDmemset(buf62,0,sizeof buf62);
- }
- /*
- buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}};
- $h5diff file7.h5 file6.h5 g1 g1 -v
- Group: </g1> and </g1>
- Attribute: <array2D> and <array2D>
- position array2D of </g1> array2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] 1 0 1
- [ 0 0 ] 2 0 2
- [ 0 0 ] 3 0 3
- [ 0 1 ] 4 0 4
- [ 0 1 ] 5 0 5
- [ 0 1 ] 6 0 6
- [ 1 0 ] 7 0 7
- [ 1 0 ] 8 0 8
- [ 1 0 ] 9 0 9
- [ 1 1 ] 10 0 10
- [ 1 1 ] 11 0 11
- [ 1 1 ] 12 0 12
- [ 2 0 ] 13 0 13
- [ 2 0 ] 14 0 14
- [ 2 0 ] 15 0 15
- [ 2 1 ] 16 0 16
- [ 2 1 ] 17 0 17
- [ 2 1 ] 18 0 18
- */
- if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
- goto out;
- if (make_attr(loc_id, 2, dims2, "array2D", tid, buf62) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_INTEGER and H5T_FLOAT
- *-------------------------------------------------------------------------
- */
-
- if(make_diffs)
- {
- HDmemset(buf72, 0, sizeof buf72);
- HDmemset(buf82, 0, sizeof buf82);
- }
- /*
- Attribute: <integer2D> and <integer2D>
- position integer2D of </g1> integer2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] 1 0 1
- [ 0 1 ] 2 0 2
- [ 1 0 ] 3 0 3
- [ 1 1 ] 4 0 4
- [ 2 0 ] 5 0 5
- [ 2 1 ] 6 0 6
- 6 differences found
- Attribute: <float2D> and <float2D>
- position float2D of </g1> float2D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 ] 1 0 1
- [ 0 1 ] 2 0 2
- [ 1 0 ] 3 0 3
- [ 1 1 ] 4 0 4
- [ 2 0 ] 5 0 5
- [ 2 1 ] 6 0 6
- */
-
- if (make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72) < 0)
- goto out;
- if (make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0)
- goto out;
-
-
- /*-------------------------------------------------------------------------
- * 3D attributes
- *-------------------------------------------------------------------------
- */
-
- /*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
- HDmemset(buf13,'z',sizeof buf13);
- }
-
- /*
- buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
- "rs","tu","vw","xz","AB","CD","EF","GH",
- "IJ","KL","MN","PQ","RS","TU","VW","XZ"};
-
- Attribute: <string3D> and <string3D>
- position string3D of </g1> string3D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 0 ] a z
- [ 0 0 0 ] b z
- [ 0 0 1 ] c z
- [ 0 0 1 ] d z
- [ 0 1 0 ] e z
- [ 0 1 0 ] f z
- [ 0 1 1 ] g z
- [ 0 1 1 ] h z
- [ 0 2 0 ] i z
- [ 0 2 0 ] j z
- [ 0 2 1 ] k z
- [ 0 2 1 ] l z
- [ 1 0 0 ] m z
- [ 1 0 0 ] n z
- [ 1 0 1 ] p z
- [ 1 0 1 ] q z
- [ 1 1 0 ] r z
- [ 1 1 0 ] s z
- [ 1 1 1 ] t z
- [ 1 1 1 ] u z
- [ 1 2 0 ] v z
- [ 1 2 0 ] w z
- [ 1 2 1 ] x z
- [ 2 0 0 ] A z
- [ 2 0 0 ] B z
- [ 2 0 1 ] C z
- [ 2 0 1 ] D z
- [ 2 1 0 ] E z
- [ 2 1 0 ] F z
- [ 2 1 1 ] G z
- [ 2 1 1 ] H z
- [ 2 2 0 ] I z
- [ 2 2 0 ] J z
- [ 2 2 1 ] K z
- [ 2 2 1 ] L z
- [ 3 0 0 ] M z
- [ 3 0 0 ] N z
- [ 3 0 1 ] P z
- [ 3 0 1 ] Q z
- [ 3 1 0 ] R z
- [ 3 1 0 ] S z
- [ 3 1 1 ] T z
- [ 3 1 1 ] U z
- [ 3 2 0 ] V z
- [ 3 2 0 ] W z
- [ 3 2 1 ] X z
- [ 3 2 1 ] Z z
- */
-
- if ((tid = H5Tcopy(H5T_C_S1)) < 0)
- goto out;
- if (H5Tset_size(tid, (size_t)2) < 0)
- goto out;
- if (make_attr(loc_id,3,dims3,"string3D",tid,buf13) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
- n=1;
- for(i = 0; i < 4; i++) {
- for(j = 0; j < 3; j++) {
- for(k = 0; k < 2; k++) {
- if(make_diffs)
- buf23[i][j][k] = 0;
- else
- buf23[i][j][k] = (char)(n++);
- }
- }
- }
-
- /*
- position bitfield3D of </g1> bitfield3D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 0 ] 1 0 1
- [ 0 0 1 ] 2 0 2
- [ 0 1 0 ] 3 0 3
- [ 0 1 1 ] 4 0 4
- [ 0 2 0 ] 5 0 5
- [ 0 2 1 ] 6 0 6
- [ 1 0 0 ] 7 0 7
- [ 1 0 1 ] 8 0 8
- [ 1 1 0 ] 9 0 9
- [ 1 1 1 ] 10 0 10
- [ 1 2 0 ] 11 0 11
- [ 1 2 1 ] 12 0 12
- [ 2 0 0 ] 13 0 13
- [ 2 0 1 ] 14 0 14
- [ 2 1 0 ] 15 0 15
- [ 2 1 1 ] 16 0 16
- [ 2 2 0 ] 17 0 17
- [ 2 2 1 ] 18 0 18
- [ 3 0 0 ] 19 0 19
- [ 3 0 1 ] 20 0 20
- [ 3 1 0 ] 21 0 21
- [ 3 1 1 ] 22 0 22
- [ 3 2 0 ] 23 0 23
- [ 3 2 1 ] 24 0 24
- */
-
- if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0)
- goto out;
- if (make_attr(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
- if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0)
- goto out;
- if (H5Tset_tag(tid, "1-byte opaque type") < 0)
- goto out;
- if (make_attr(loc_id,3,dims3,"opaque3D",tid,buf23) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
- n=1;
- for(i = 0; i < 4; i++) {
- for(j = 0; j < 3; j++) {
- for(k = 0; k < 2; k++) {
- if(make_diffs) {
- buf33[i][j][k].a = 0;
- buf33[i][j][k].b = 0;
- }
- else {
- buf33[i][j][k].a = (char)(n++);
- buf33[i][j][k].b = n++;
- }
- }
- }
- }
- /*position compound3D of </g1> compound3D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 0 ] 1 0 1
- [ 0 0 0 ] 2 0 2
- [ 0 0 1 ] 3 0 3
- [ 0 0 1 ] 4 0 4
- [ 0 1 0 ] 5 0 5
- [ 0 1 0 ] 6 0 6
- [ 0 1 1 ] 7 0 7
- [ 0 1 1 ] 8 0 8
- [ 0 2 0 ] 9 0 9
- [ 0 2 0 ] 10 0 10
- [ 0 2 1 ] 11 0 11
- [ 0 2 1 ] 12 0 12
- [ 1 0 0 ] 13 0 13
- [ 1 0 0 ] 14 0 14
- [ 1 0 1 ] 15 0 15
- [ 1 0 1 ] 16 0 16
- [ 1 1 0 ] 17 0 17
- [ 1 1 0 ] 18 0 18
- [ 1 1 1 ] 19 0 19
- [ 1 1 1 ] 20 0 20
- [ 1 2 0 ] 21 0 21
- [ 1 2 0 ] 22 0 22
- [ 1 2 1 ] 23 0 23
- [ 1 2 1 ] 24 0 24
- [ 2 0 0 ] 25 0 25
- [ 2 0 0 ] 26 0 26
- [ 2 0 1 ] 27 0 27
- [ 2 0 1 ] 28 0 28
- [ 2 1 0 ] 29 0 29
- [ 2 1 0 ] 30 0 30
- [ 2 1 1 ] 31 0 31
- [ 2 1 1 ] 32 0 32
- [ 2 2 0 ] 33 0 33
- [ 2 2 0 ] 34 0 34
- [ 2 2 1 ] 35 0 35
- [ 2 2 1 ] 36 0 36
- [ 3 0 0 ] 37 0 37
- [ 3 0 0 ] 38 0 38
- [ 3 0 1 ] 39 0 39
- [ 3 0 1 ] 40 0 40
- [ 3 1 0 ] 41 0 41
- [ 3 1 0 ] 42 0 42
- [ 3 1 1 ] 43 0 43
- [ 3 1 1 ] 44 0 44
- [ 3 2 0 ] 45 0 45
- [ 3 2 0 ] 46 0 46
- [ 3 2 1 ] 47 0 47
- [ 3 2 1 ] 48 0 48
- */
-
-
-
- if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0)
- goto out;
- if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0)
- goto out;
- if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0)
- goto out;
- if (make_attr(loc_id,3,dims3,"compound3D",tid,buf33) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* Create references to dataset */
- if (dset_name)
- {
- for (i = 0; i < 4; i++)
- {
- for (j = 0; j < 3; j++)
- {
- for (k = 0; k < 2; k++)
- if (H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0)
- goto out;
- }
- }
- if (make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43) < 0)
- goto out;
- }
-
- /*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
-
- for (i = 0; i < 4; i++)
- {
- for (j = 0; j < 3; j++)
- {
- for (k = 0; k < 2; k++)
- {
- if (make_diffs)
- {
- buf453[i][j][k]=RED;
- }
- else
- {
- buf453[i][j][k]=GREEN;
- }
- }
- }
- }
-
- /*
- position enum3D of </g1> enum3D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 0 ] GREEN RED
- [ 0 0 1 ] GREEN RED
- [ 0 1 0 ] GREEN RED
- [ 0 1 1 ] GREEN RED
- [ 0 2 0 ] GREEN RED
- [ 0 2 1 ] GREEN RED
- [ 1 0 0 ] GREEN RED
- [ 1 0 1 ] GREEN RED
- [ 1 1 0 ] GREEN RED
- [ 1 1 1 ] GREEN RED
- [ 1 2 0 ] GREEN RED
- [ 1 2 1 ] GREEN RED
- [ 2 0 0 ] GREEN RED
- [ 2 0 1 ] GREEN RED
- [ 2 1 0 ] GREEN RED
- [ 2 1 1 ] GREEN RED
- [ 2 2 0 ] GREEN RED
- [ 2 2 1 ] GREEN RED
- [ 3 0 0 ] GREEN RED
- [ 3 0 1 ] GREEN RED
- [ 3 1 0 ] GREEN RED
- [ 3 1 1 ] GREEN RED
- [ 3 2 0 ] GREEN RED
- [ 3 2 1 ] GREEN RED
- */
-
-
- if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0)
- goto out;
- if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0)
- goto out;
- if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0)
- goto out;
- if (make_attr(loc_id,3,dims3,"enum3D",tid,buf453) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
- n=0;
- for (i = 0; i < 4; i++)
- {
- for (j = 0; j < 3; j++)
- {
- for (k = 0; k < 2; k++)
- {
- unsigned l;
-
- buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int));
- buf53[i][j][k].len = (size_t)i + 1;
- for (l = 0; l < i + 1; l++)
- if (make_diffs)
- ((int *)buf53[i][j][k].p)[l] = 0;
- else
- ((int *)buf53[i][j][k].p)[l] = n++;
- }
- }
- }
- /*
- position vlen3D of </g1> vlen3D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 1 ] 1 0 1
- [ 0 1 0 ] 2 0 2
- [ 0 1 1 ] 3 0 3
- [ 0 2 0 ] 4 0 4
- [ 0 2 1 ] 5 0 5
- [ 1 0 0 ] 6 0 6
- [ 1 0 0 ] 7 0 7
- [ 1 0 1 ] 8 0 8
- [ 1 0 1 ] 9 0 9
- [ 1 1 0 ] 10 0 10
- etc
- */
- if ((sid = H5Screate_simple(3, dims3, NULL)) < 0)
- goto out;
- if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0)
- goto out;
- if ((aid = H5Acreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (H5Awrite(aid, tid, buf53) < 0)
- goto out;
- if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0)
- goto out;
- if (H5Aclose(aid) < 0)
- goto out;
- aid = -1;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
- if (H5Sclose(sid) < 0)
- goto out;
- sid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
- n=1;
- for (i = 0; i < 24; i++)
- {
- for (j = 0; j < (int)dimarray[0]; j++)
- {
- if (make_diffs) buf63[i][j]=0;
- else buf63[i][j]=n++;
- }
- }
- /*
- position array3D of </g1> array3D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 0 ] 1 0 1
- [ 0 0 0 ] 2 0 2
- [ 0 0 0 ] 3 0 3
- [ 0 0 1 ] 4 0 4
- [ 0 0 1 ] 5 0 5
- [ 0 0 1 ] 6 0 6
- [ 0 1 0 ] 7 0 7
- etc
- */
-
- if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0)
- goto out;
- if (make_attr(loc_id, 3, dims3, "array3D", tid, buf63) < 0)
- goto out;
- if (H5Tclose(tid) < 0)
- goto out;
- tid = -1;
-
- /*-------------------------------------------------------------------------
- * H5T_INTEGER and H5T_FLOAT
- *-------------------------------------------------------------------------
- */
- n = 1; f = 1;
- for(i = 0; i < 4; i++)
- {
- for(j = 0; j < 3; j++)
- {
- for(k = 0; k < 2; k++)
- {
- if(make_diffs)
- {
- buf73[i][j][k] = 0;
- buf83[i][j][k] = 0;
- }
- else
- {
- buf73[i][j][k] = n++;
- buf83[i][j][k] = f++;
- }
- }
- }
- }
-
- /*
- position integer3D of </g1> integer3D of </g1> difference
- ------------------------------------------------------------
- [ 0 0 0 ] 1 0 1
- [ 0 0 1 ] 2 0 2
- [ 0 1 0 ] 3 0 3
- [ 0 1 1 ] 4 0 4
- [ 0 2 0 ] 5 0 5
- [ 0 2 1 ] 6 0 6
- [ 1 0 0 ] 7 0 7
- [ 1 0 1 ] 8 0 8
- [ 1 1 0 ] 9 0 9
- [ 1 1 1 ] 10 0 10
- etc
- */
- if (make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0)
- goto out;
- if (make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0)
- goto out;
-
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Aclose(aid);
- H5Sclose(sid);
- H5Tclose(tid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-
-
-/*-------------------------------------------------------------------------
-* Function: make_dset
-*
-* Purpose: utility function to create and write a dataset in LOC_ID
-*
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
-*
-* Date: November 12, 2003
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_dset(hid_t loc_id,
- const char *name,
- hid_t sid,
- hid_t dcpl,
- void *buf)
-{
- hid_t did=-1;
-
- if ((did = H5Dcreate2(loc_id, name, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
- return -1;
- if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
- goto out;
- if (H5Dclose(did) < 0)
- return -1;
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: write_dset
-*
-* Purpose: utility function to create and write a dataset in LOC_ID
-*
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
-*
-* Date: November 12, 2003
-*
-*-------------------------------------------------------------------------
-*/
-static
-int write_dset( hid_t loc_id,
- int rank,
- hsize_t *dims,
- const char *dset_name,
- hid_t tid,
- void *buf )
-{
- hid_t did=-1;
- hid_t sid=-1;
-
- if ((sid = H5Screate_simple(rank, dims, NULL)) < 0)
- return -1;
- if ((did = H5Dcreate2(loc_id, dset_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if (buf)
- {
- if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
- goto out;
- }
- if (H5Dclose(did) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-
-/*-------------------------------------------------------------------------
-* Function: make_attr
-*
-* Purpose: utility function to write an attribute in LOC_ID
-*
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
-*
-* Date: November 12, 2003
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_attr(hid_t loc_id,
- int rank,
- hsize_t *dims,
- const char *attr_name,
- hid_t tid,
- void *buf)
-{
- hid_t aid;
- hid_t sid;
-
- if ((sid = H5Screate_simple(rank, dims, NULL)) < 0)
- return -1;
- if ((aid = H5Acreate2(loc_id, attr_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(buf)
- {
- if(H5Awrite(aid, tid, buf) < 0)
- goto out;
- }
- if (H5Aclose(aid) < 0)
- goto out;
- if (H5Sclose(sid) < 0)
- goto out;
- return 0;
-
-out:
- H5E_BEGIN_TRY {
- H5Aclose(aid);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-}
-
-
-/*-------------------------------------------------------------------------
-* Function: make_named_dtype
-*
-* Purpose: create a file with named datatypes in various configurations
-*
-*-------------------------------------------------------------------------
-*/
-static
-int make_named_dtype(hid_t loc_id)
-{
- hsize_t dims[1] ={3};
- hid_t did=-1;
- hid_t aid=-1;
- hid_t sid=-1;
- hid_t tid=-1;
- hid_t gid=-1;
-
- if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
- goto out;
-
- /* Create a dataset with an anonymous committed datatype as the first thing
- * h5repack sees */
- if((tid = H5Tcopy(H5T_STD_I16LE)) < 0)
- goto out;
- if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
- if ((did = H5Dcreate2(loc_id, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Tclose(tid) < 0)
- goto out;
-
- /* Create an attribute on that dataset that uses a committed datatype in
- * a remote group */
- if((gid = H5Gcreate2(loc_id, "M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Gclose(gid) < 0)
- goto out;
- if((gid = H5Gcreate2(loc_id, "M/M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Gclose(gid) < 0)
- goto out;
- if((tid = H5Tcopy(H5T_STD_I16BE)) < 0)
- goto out;
- if(H5Tcommit2(loc_id, "/M/M/A", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
- if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Aclose(aid) < 0)
- goto out;
- if(H5Tclose(tid) < 0)
- goto out;
- if(H5Dclose(did) < 0)
- goto out;
-
- /* Create a dataset in the remote group that uses a committed datatype in
- * the root group */
- if((tid = H5Tcopy(H5T_STD_I32LE)) < 0)
- goto out;
- if(H5Tcommit2(loc_id, "N", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
- if((did = H5Dcreate2(loc_id, "M/M/B", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Tclose(tid) < 0)
- goto out;
-
- /* Create an attribute on the remote dataset that uses an anonymous
- * committed datatype */
- if((tid = H5Tcopy(H5T_STD_I32BE)) < 0)
- goto out;
- if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0)
- goto out;
- if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Aclose(aid) < 0)
- goto out;
-
- /* Create another attribute that uses the same anonymous datatype */
- if((aid = H5Acreate2(did, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Aclose(aid) < 0)
- goto out;
- if(H5Tclose(tid) < 0)
- goto out;
- if(H5Dclose(did) < 0)
- goto out;
-
- /* Create a dataset in the root group that uses the committed datatype in
- * the root group */
- if((tid = H5Topen2(loc_id, "N", H5P_DEFAULT)) < 0)
- goto out;
- if((did = H5Dcreate2(loc_id, "O", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Dclose(did) < 0)
- goto out;
-
- /* Create 2 attributes on the committed datatype that use that datatype */
- if((aid = H5Acreate2(tid, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Aclose(aid) < 0)
- goto out;
- if((aid = H5Acreate2(tid, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
- if(H5Aclose(aid) < 0)
- goto out;
- if(H5Tclose(tid) < 0)
- goto out;
-
- /* Close */
- if (H5Sclose(sid) < 0)
- goto out;
-
- return 0;
-
-out:
- H5E_BEGIN_TRY
- {
- H5Tclose(tid);
- H5Aclose(aid);
- H5Sclose(sid);
- H5Dclose(did);
- H5Gclose(gid);
- } H5E_END_TRY;
- return -1;
-} /* end make_named_dtype() */
-
-/*-------------------------------------------------------------------------
- * Function: add_attr_with_objref
- *
- * Purpose:
- * Create attributes with object reference to objects (dset,
- * group, datatype).
- *
- * Note:
- * this function depends on locally created objects, however can be modified
- * to be independent as necessary
- *
- * Programmer: Jonathan Kim (March 23, 2010)
- *------------------------------------------------------------------------*/
-static herr_t add_attr_with_objref(hid_t file_id, hid_t obj_id)
-{
- int ret = SUCCEED;
- int status;
- /* attr obj ref */
- hsize_t dim_attr_objref[1]={3};
- hobj_ref_t data_attr_objref[3];
-
- /* --------------------------------
- * add attribute with obj ref type
- */
- /* ref to dset */
- status = H5Rcreate(&data_attr_objref[0],file_id,NAME_OBJ_DS1,H5R_OBJECT,(hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* ref to group */
- status = H5Rcreate(&data_attr_objref[1],file_id,NAME_OBJ_GRP,H5R_OBJECT,(hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* ref to datatype */
- status = H5Rcreate(&data_attr_objref[2],file_id,NAME_OBJ_NDTYPE,H5R_OBJECT,(hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create attr with obj ref type */
- status = make_attr(obj_id,1,dim_attr_objref,"Attr_OBJREF",H5T_STD_REF_OBJ,data_attr_objref);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
-
- return ret;
-
-}
-
-/*-------------------------------------------------------------------------
- * Function: add_attr_with_regref
- *
- * Purpose:
- * Create attributes with region reference to dset
- *
- * Note:
- * this function depends on locally created objects, however can be modified
- * to be independent as necessary
- *
- * Programmer: Jonathan Kim (March 23, 2010)
- *------------------------------------------------------------------------*/
-static herr_t add_attr_with_regref(hid_t file_id, hid_t obj_id)
-{
- int ret = SUCCEED;
- int status;
-
- /* attr region ref */
- hid_t sid_regrefed_dset=0;
- hsize_t dim_regrefed_dset[2]={3,6};
- hsize_t coords_regrefed_dset[3][2] = {{0,1},{1,2},{2,3}};
- hsize_t dim_attr_regref[1]= {1}; /* dim of */
- hdset_reg_ref_t data_attr_regref[1];
-
-
- /* -----------------------------------
- * add attribute with region ref type
- */
- sid_regrefed_dset = H5Screate_simple (2, dim_regrefed_dset, NULL);
- if (sid_regrefed_dset < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* select elements space for reference */
- status = H5Sselect_elements (sid_regrefed_dset, H5S_SELECT_SET, (size_t)3, coords_regrefed_dset[0]);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create region reference from elements space */
- status = H5Rcreate (&data_attr_regref[0], file_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_regrefed_dset);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create attr with region ref type */
- status = make_attr(obj_id,1,dim_attr_regref,"Attr_REGREF",H5T_STD_REF_DSETREG,data_attr_regref);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if (sid_regrefed_dset > 0)
- H5Sclose (sid_regrefed_dset);
-
- return ret;
-
-}
-
-/*-------------------------------------------------------------------------
- * Function: gen_refered_objs
- *
- * Purpose:
- * Create objects (dataset, group, datatype) to be referenced
- *
- * Note:
- * This function is to use along with gen_obj_ref() gen_region_ref()
- *
- * Programmer: Jonathan Kim (March 23, 2010)
- *------------------------------------------------------------------------*/
-static herr_t gen_refered_objs(hid_t loc_id)
-{
- int status;
- herr_t ret = SUCCEED;
-
- /* objects (dset, group, datatype) */
- hid_t sid=0, did1=0, gid=0, tid=0;
- hsize_t dims1[1]={3};
- int data[3] = {10,20,30};
-
- /* Dset2 */
- hid_t sid2=0, did2=0;
- hsize_t dims2[2] = {3,16};
- char data2[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"};
-
- /*-----------------------
- * add short dataset
- * (define NAME_OBJ_DS1)
- */
- sid = H5Screate_simple(1, dims1, NULL);
- if (sid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- did1 = H5Dcreate2 (loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (did1 < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*--------------
- * add group
- * (define NAME_OBJ_GRP)
- */
- gid = H5Gcreate2 (loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (gid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*----------------------
- * add named datatype
- * (define NAME_OBJ_NDTYPE)
- */
- tid = H5Tcopy(H5T_NATIVE_INT);
- status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-
- /*--------------------------
- * create long dataset
- * (define NAME_OBJ_DS2)
- */
- sid2 = H5Screate_simple (2, dims2, NULL);
- if (sid2 < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create normal dataset which is refered */
- did2 = H5Dcreate2 (loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
- if (did2 < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* write values to dataset */
- status = H5Dwrite (did2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if(did1 > 0)
- H5Dclose(did1);
- if(gid > 0)
- H5Gclose(gid);
- if(tid > 0)
- H5Tclose(tid);
- if(sid > 0)
- H5Sclose(sid);
-
- if(did2 > 0)
- H5Dclose(did2);
- if(sid2 > 0)
- H5Sclose(sid2);
- return ret;
-
-}
-
-/*-------------------------------------------------------------------------
- * Function: gen_obj_ref
- *
- * Purpose:
- * Generate object references to objects (dataset,group and named datatype)
- *
- * Note:
- * copied from h5copygentest.c and upate to create named datatype
- *
- * Programmer: Jonathan Kim (March 18, 2010)
- *------------------------------------------------------------------------*/
-static herr_t gen_obj_ref(hid_t loc_id)
-{
- int status;
- herr_t ret = SUCCEED;
-
- hid_t sid=0, oid=0;
- hsize_t dims_dset_objref[1]={3};
-
- /* attr with int type */
- hsize_t dim_attr_int[1]={2};
- int data_attr_int[2] = {10,20};
-
- /* write buffer for obj reference */
- hobj_ref_t objref_buf[3];
-
- /*---------------------------------------------------------
- * create obj references to the previously created objects.
- * Passing -1 as reference is an object.*/
-
- /* obj ref to dataset */
- status = H5Rcreate (&objref_buf[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* obj ref to group */
- status = H5Rcreate (&objref_buf[1], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* obj ref to named-datatype */
- status = H5Rcreate (&objref_buf[2], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*---------------------------------------------------------
- * create dataset contain references
- */
- sid = H5Screate_simple (1, dims_dset_objref, NULL);
- if (sid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
- if (oid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, objref_buf);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* add attribute with int type */
- if (make_attr(oid,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0)
- goto out;
-
- /* add attribute with obj ref */
- status = add_attr_with_objref(loc_id, oid);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* add attribute with region ref */
- status = add_attr_with_regref(loc_id, oid);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if(oid > 0)
- H5Dclose(oid);
- if(sid > 0)
- H5Sclose(sid);
-
- return ret;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: gen_region_ref
- *
- * Purpose: Generate dataset region references
- *
- * Note:
- * copied from h5copygentest.c
- *
- * Programmer: Jonathan Kim (March 18, 2010)
- *------------------------------------------------------------------------*/
-static herr_t gen_region_ref(hid_t loc_id)
-{
- int status;
- herr_t ret = SUCCEED;
-
- /* target dataset */
- hid_t sid_trg=0;
- hsize_t dims_trg[2] = {3,16};
-
- /* dset with region ref type */
- hid_t sid_ref=0, oid_ref=0;
-
- /* region ref to target dataset */
- hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} };
- hdset_reg_ref_t rr_data[2];
- hsize_t start[2] = {0,0};
- hsize_t stride[2] = {2,11};
- hsize_t count[2] = {2,2};
- hsize_t block[2] = {1,3};
- hsize_t dims1[1] = {2};
-
- /* attr with int type */
- hsize_t dim_attr_int[1]={2};
- int data_attr_int[2] = {10,20};
-
- sid_trg = H5Screate_simple (2, dims_trg, NULL);
- if (sid_trg < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* select elements space for reference */
- status = H5Sselect_elements (sid_trg, H5S_SELECT_SET, (size_t)4, coords[0]);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create region reference from elements space */
- status = H5Rcreate (&rr_data[0], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* select hyperslab space for reference */
- status = H5Sselect_hyperslab (sid_trg, H5S_SELECT_SET, start, stride, count, block);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create region reference from hyperslab space */
- status = H5Rcreate (&rr_data[1], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* Create dataspace. */
- sid_ref = H5Screate_simple (1, dims1, NULL);
- if (sid_ref < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* create region reference dataset */
- oid_ref = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid_ref, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT);
- if (oid_ref < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* write data as region references */
- status = H5Dwrite (oid_ref, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* add attribute with int type */
- if (make_attr(oid_ref,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0)
- goto out;
-
- /* add attribute with obj ref */
- status = add_attr_with_objref(loc_id, oid_ref);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* add attribute with region ref */
- status = add_attr_with_regref(loc_id, oid_ref);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- if (oid_ref > 0)
- H5Dclose (oid_ref);
- if (sid_ref > 0)
- H5Sclose (sid_ref);
- if (sid_trg > 0)
- H5Sclose (sid_trg);
-
- return ret;
-}
-
-/*-------------------------------------------------------------------------
-* Function: make_references
-*
-* Purpose: create a file with obj and region references
-*
-* Programmer: Jonathan Kim (March 18, 2010)
-*-------------------------------------------------------------------------
-*/
-static herr_t make_references(hid_t loc_id)
-{
- herr_t ret = SUCCEED;
- herr_t status;
-
- /* add target objects */
- status = gen_refered_objs(loc_id);
- if (status == FAIL)
- {
- fprintf(stderr, "Failed to generate referenced object.\n");
- ret = FAIL;
- }
-
- /* add object reference */
- status = gen_obj_ref(loc_id);
- if (status == FAIL)
- {
- fprintf(stderr, "Failed to generate object reference.\n");
- ret = FAIL;
- }
-
- /* add region reference */
- status = gen_region_ref(loc_id);
- if (status == FAIL)
- {
- fprintf(stderr, "Failed to generate region reference.\n");
- ret = FAIL;
- }
-
- return ret;
-}
-
-/*-------------------------------------------------------------------------
-* Function: make_complex_attr_references
-*
-* Purpose:
-* create a file with :
-* 1. obj ref in attribute of compound type
-* 2. region ref in attribute of compound type
-* 3. obj ref in attribute of vlen type
-* 4. region ref in attribute of vlen type
-*
-* Programmer: Jonathan (March 25, 2010)
-*-------------------------------------------------------------------------
-*/
-/* obj dset */
-#define RANK_OBJ 2
-#define DIM0_OBJ 6
-#define DIM1_OBJ 10
-/* container dset */
-#define RANK_DSET 1
-#define DIM_DSET 4
-/* 1. obj references in compound attr */
-#define RANK_COMP_OBJREF 1
-#define DIM_COMP_OBJREF 3 /* for dataset, group, datatype */
-/* 2. region references in compound attr */
-#define RANK_COMP_REGREF 1
-#define DIM_COMP_REGREF 1 /* for element region */
-/* 3. obj references in vlen attr */
-#define RANK_VLEN_OBJREF 1
-#define DIM_VLEN_OBJREF 3 /* for dataset, group, datatype */
-#define LEN0_VLEN_OBJREF 1 /* dataset */
-#define LEN1_VLEN_OBJREF 1 /* group */
-#define LEN2_VLEN_OBJREF 1 /* datatype */
-/* 4. region references in vlen attr */
-#define RANK_VLEN_REGREF 1
-#define DIM_VLEN_REGREF 1 /* for element region */
-#define LEN0_VLEN_REGREF 1 /* element region */
-
-static herr_t make_complex_attr_references(hid_t loc_id)
-{
- herr_t ret = SUCCEED;
- herr_t status;
- /*
- * for objects
- */
- hid_t objgid=0, objdid=0, objtid=0, objsid=0;
- hsize_t obj_dims[RANK_OBJ] = {DIM0_OBJ, DIM1_OBJ};
- int obj_data[DIM0_OBJ][DIM1_OBJ]=
- {{ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9},
- {10,11,12,13,14,15,16,17,18,19},
- {20,21,22,23,24,25,26,27,28,29},
- {30,31,32,33,34,35,36,37,38,39},
- {40,41,42,43,44,45,46,47,48,49},
- {50,51,52,53,54,55,56,57,58,59}};
-
- /*
- * group main
- */
- hid_t main_gid=0;
- /*
- * dataset which the attribute will be attached to
- */
- hsize_t main_dset_dims[RANK_DSET] = {DIM_DSET};
- hid_t main_sid=0, main_did=0;
- /*
- * 1. obj references in compound attr
- */
- hid_t comp_objref_tid=0, comp_objref_aid=0;
- typedef struct comp_objref_t {
- hobj_ref_t val_objref;
- int val_int;
- } comp_objref_t;
- comp_objref_t comp_objref_data[DIM_COMP_OBJREF];
- hid_t comp_objref_attr_sid=0;
- hsize_t comp_objref_dim[RANK_COMP_OBJREF] = {DIM_COMP_OBJREF};
-
- /*
- * 2. region references in compound attr
- */
- hid_t comp_regref_tid=0, comp_regref_aid=0;
- typedef struct comp_regref_t {
- hdset_reg_ref_t val_regref;
- int val_int;
- } comp_regref_t;
- comp_regref_t comp_regref_data[DIM_COMP_REGREF];
- hid_t comp_regref_attr_sid=0;
- hsize_t comp_regref_dim[RANK_COMP_REGREF] = {DIM_COMP_REGREF};
- hsize_t coords[4][2] = { {0,1}, {2,3}, {3,4}, {4,5} };
-
- /*
- * 3. obj references in vlen attr
- */
- hid_t vlen_objref_attr_tid=0, vlen_objref_attr_sid=0;
- hid_t vlen_objref_attr_id=0;
- hvl_t vlen_objref_data[DIM_VLEN_OBJREF];
- hsize_t vlen_objref_dims[RANK_VLEN_OBJREF] = {DIM_VLEN_OBJREF};
-
- /*
- * 4. region references in vlen attr
- */
- hid_t vlen_regref_attr_tid=0, vlen_regref_attr_sid=0;
- hid_t vlen_regref_attr_id=0;
- hvl_t vlen_regref_data[DIM_VLEN_REGREF];
- hsize_t vlen_regref_dim[RANK_VLEN_REGREF] = {DIM_VLEN_REGREF};
-
-
- /* ---------------------------------------
- * create objects which to be referenced
- */
- /* object1 group */
- objgid = H5Gcreate2(loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
-
- /* object2 dataset */
- objsid = H5Screate_simple(RANK_OBJ, obj_dims, NULL);
- objdid = H5Dcreate2(loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, objsid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- status = H5Dwrite(objdid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* object3 named datatype */
- objtid = H5Tcopy(H5T_NATIVE_INT);
- status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, objtid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-
- /* ---------------------------------------------
- * Put testing objs in this group
- * create group contain dataset with attribute and the attribute has
- * compound type which contain obj and region reference */
- main_gid = H5Gcreate2(loc_id, "group_main", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- if (main_gid < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*----------------------------------------------------------
- * create dataset which the attribute will be attached to
- */
- main_sid = H5Screate_simple(RANK_DSET, main_dset_dims, NULL);
-
- main_did = H5Dcreate2(main_gid, "dset_main", H5T_NATIVE_INT, main_sid, H5P_DEFAULT,H5P_DEFAULT, H5P_DEFAULT);
-
- status = H5Dwrite(main_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*-------------------------------------------------------------------
- * 1. create obj references in a attribute of compound type
- */
-
- /*
- * create compound type for attribute
- */
- comp_objref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_objref_t));
-
- H5Tinsert(comp_objref_tid, "value_objref", HOFFSET(comp_objref_t, val_objref), H5T_STD_REF_OBJ);
- H5Tinsert(comp_objref_tid, "value_int", HOFFSET(comp_objref_t, val_int), H5T_NATIVE_INT);
-
- /*
- * Create the object references into compound type
- */
- /* references to dataset */
- status = H5Rcreate (&(comp_objref_data[0].val_objref), loc_id, NAME_OBJ_DS1, H5R_OBJECT,(hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- comp_objref_data[0].val_int = 0;
-
- /* references to group */
- status = H5Rcreate (&(comp_objref_data[1].val_objref), loc_id, NAME_OBJ_GRP, H5R_OBJECT,(hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- comp_objref_data[1].val_int = 10;
-
- /* references to datatype */
- status = H5Rcreate (&(comp_objref_data[2].val_objref), loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT,(hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- comp_objref_data[2].val_int = 20;
-
- /*
- * create attribute and write the object ref
- */
- comp_objref_attr_sid = H5Screate_simple (RANK_COMP_OBJREF, comp_objref_dim, NULL);
- comp_objref_aid = H5Acreate2 (main_did, "Comp_OBJREF", comp_objref_tid, comp_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
- status = H5Awrite (comp_objref_aid, comp_objref_tid, comp_objref_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*-------------------------------------------------------------------
- * 2. create region references in attribute of compound type
- */
- /*
- * create compound type for attribute
- */
- comp_regref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_regref_t));
-
- H5Tinsert(comp_regref_tid, "value_regref", HOFFSET(comp_regref_t, val_regref), H5T_STD_REF_DSETREG);
- H5Tinsert(comp_regref_tid, "value_int", HOFFSET(comp_regref_t, val_int), H5T_NATIVE_INT);
-
- /*
- * create the region reference
- */
- status = H5Sselect_elements (objsid, H5S_SELECT_SET, (size_t)4, coords[0]);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- status = H5Rcreate (&(comp_regref_data[0].val_regref), loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- comp_regref_data[0].val_int = 10;
-
- /*
- * create attribute and write the region ref
- */
- comp_regref_attr_sid = H5Screate_simple (RANK_COMP_REGREF, comp_regref_dim, NULL);
- comp_regref_aid = H5Acreate2 (main_did, "Comp_REGREF", comp_regref_tid, comp_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
- status = H5Awrite (comp_regref_aid, comp_regref_tid, comp_regref_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-
- /*-------------------------------------------------------------------
- * 3. create obj references in attribute of vlen type
- */
- /*
- * prepare vlen data
- */
- vlen_objref_data[0].len = LEN0_VLEN_OBJREF;
- vlen_objref_data[0].p = HDmalloc (vlen_objref_data[0].len * sizeof(hobj_ref_t));
- vlen_objref_data[1].len = LEN1_VLEN_OBJREF;
- vlen_objref_data[1].p = HDmalloc (vlen_objref_data[1].len * sizeof(hobj_ref_t));
- vlen_objref_data[2].len = LEN2_VLEN_OBJREF;
- vlen_objref_data[2].p = HDmalloc (vlen_objref_data[2].len * sizeof(hobj_ref_t));
-
- /*
- * create obj references
- */
- /* reference to dataset */
- status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- /* reference to group */
- status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[1].p)[0], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- /* reference to datatype */
- status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[2].p)[0], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*
- * create vlen type with obj reference
- */
- vlen_objref_attr_tid = H5Tvlen_create (H5T_STD_REF_OBJ);
- vlen_objref_attr_sid = H5Screate_simple (RANK_VLEN_OBJREF, vlen_objref_dims, NULL);
-
- /*
- * create attribute and write the object reference
- */
- vlen_objref_attr_id = H5Acreate2(main_did, "Vlen_OBJREF", vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
- status = H5Awrite (vlen_objref_attr_id, vlen_objref_attr_tid, vlen_objref_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* close resource for vlen data */
- status = H5Dvlen_reclaim (vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, vlen_objref_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*-------------------------------------------------------------------
- * 4. create region references in a attribute of vlen type
- */
-
- /*
- * prepare vlen data
- */
- vlen_regref_data[0].len = LEN0_VLEN_REGREF;
- vlen_regref_data[0].p = HDmalloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t));
-
- /*
- * create region reference
- */
- status = H5Sselect_elements(objsid, H5S_SELECT_SET, (size_t)4, coords[0]);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
- status = H5Rcreate (&((hdset_reg_ref_t*)vlen_regref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /*
- * create vlen type with region reference
- */
- vlen_regref_attr_tid = H5Tvlen_create(H5T_STD_REF_DSETREG);
- vlen_regref_attr_sid = H5Screate_simple(RANK_VLEN_REGREF, vlen_regref_dim, NULL);
-
- /*
- * create attribute and write the region reference
- */
- vlen_regref_attr_id = H5Acreate2(main_did, "Vlen_REGREF", vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT);
- status = H5Awrite(vlen_regref_attr_id, vlen_regref_attr_tid, vlen_regref_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
- /* close resource for vlen data */
- status = H5Dvlen_reclaim (vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, vlen_regref_data);
- if (status < 0)
- {
- fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__);
- ret = FAIL;
- goto out;
- }
-
-out:
- /* release resources */
- if (objgid > 0)
- H5Gclose(objgid);
- if (objsid > 0)
- H5Sclose(objsid);
- if (objdid > 0)
- H5Dclose(objdid);
- if (objtid > 0)
- H5Tclose(objtid);
-
- if (main_gid > 0)
- H5Gclose(main_gid);
- if (main_sid > 0)
- H5Sclose(main_sid);
- if (main_did > 0)
- H5Dclose(main_did);
- /* comp obj ref */
- if (comp_objref_tid > 0)
- H5Tclose(comp_objref_tid);
- if (comp_objref_aid > 0)
- H5Aclose(comp_objref_aid);
- if (comp_objref_attr_sid > 0)
- H5Sclose(comp_objref_attr_sid);
- /* comp region ref */
- if (comp_regref_tid > 0)
- H5Tclose(comp_regref_tid);
- if (comp_regref_aid > 0)
- H5Aclose(comp_regref_aid);
- if (comp_regref_attr_sid > 0)
- H5Sclose(comp_regref_attr_sid);
- /* vlen obj ref */
- if (vlen_objref_attr_id > 0)
- H5Aclose(vlen_objref_attr_id);
- if (vlen_objref_attr_sid > 0)
- H5Sclose(vlen_objref_attr_sid);
- if (vlen_objref_attr_tid > 0)
- H5Tclose(vlen_objref_attr_tid);
- /* vlen region ref */
- if (vlen_regref_attr_id > 0)
- H5Aclose(vlen_regref_attr_id);
- if (vlen_regref_attr_sid > 0)
- H5Sclose(vlen_regref_attr_sid);
- if (vlen_regref_attr_tid > 0)
- H5Tclose(vlen_regref_attr_tid);
-
- return ret;
-}