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-rw-r--r--tools/h5repack/Makefile.in6
-rw-r--r--tools/h5repack/h5repack.h41
-rw-r--r--tools/h5repack/h5repack_copy.c233
-rw-r--r--tools/h5repack/h5repack_refs.c600
-rw-r--r--tools/h5repack/testh5repack_attr.c (renamed from tools/h5repack/test_h5repack_add.c)300
-rw-r--r--tools/h5repack/testh5repack_dset.c668
-rw-r--r--tools/h5repack/testh5repack_filters.c295
-rw-r--r--tools/h5repack/testh5repack_main.c (renamed from tools/h5repack/test_h5repack_main.c)4
8 files changed, 1751 insertions, 396 deletions
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
index 617e4c6..dc4d686 100644
--- a/tools/h5repack/Makefile.in
+++ b/tools/h5repack/Makefile.in
@@ -50,10 +50,10 @@ MOSTLYCLEAN=*.h5
## Source and object files for programs...
##
-PROG_SRC=h5repack.c h5repack_copy.c h5repack_list.c h5repack_main.c h5repack_opttable.c h5repack_parse.c test_h5repack_add.c test_h5repack_main.c
+PROG_SRC=h5repack.c h5repack_copy.c h5repack_refs.c h5repack_list.c h5repack_main.c h5repack_opttable.c h5repack_parse.c testh5repack_attr.c testh5repack_dset.c testh5repack_filters.c testh5repack_main.c
PROG_OBJ=$(PROG_SRC:.c=.lo)
-OBJS=h5repack.lo h5repack_copy.lo h5repack_list.lo h5repack_main.lo h5repack_opttable.lo h5repack_parse.lo
-TEST_OBJS=h5repack.lo h5repack_copy.lo h5repack_list.lo h5repack_opttable.lo h5repack_parse.lo test_h5repack_add.lo test_h5repack_main.lo
+OBJS=h5repack.lo h5repack_copy.lo h5repack_refs.lo h5repack_list.lo h5repack_main.lo h5repack_opttable.lo h5repack_parse.lo
+TEST_OBJS=h5repack.lo h5repack_copy.lo h5repack_refs.lo h5repack_list.lo h5repack_opttable.lo h5repack_parse.lo testh5repack_attr.lo testh5repack_dset.lo testh5repack_filters.lo testh5repack_main.lo
PRIVATE_HDR=
diff --git a/tools/h5repack/h5repack.h b/tools/h5repack/h5repack.h
index bb0f8fc..9e857e7 100644
--- a/tools/h5repack/h5repack.h
+++ b/tools/h5repack/h5repack.h
@@ -64,6 +64,7 @@ typedef struct {
char path[MAX_NC_NAME]; /* name of object */
comp_info_t comp; /* compression information */
chunk_info_t chunk; /* chunk information */
+ hid_t refobj_id; /* object ID */
} pack_info_t;
/* store a table of all objects */
@@ -129,7 +130,7 @@ int copy_file(const char* fnamein,
void print_objlist(const char *filename,
int nobjects,
- trav_info_t *info );
+ trav_info_t *travi );
int do_copy_file(hid_t fidin,
hid_t fidout,
@@ -139,13 +140,39 @@ int do_copy_file(hid_t fidin,
int copy_attr(hid_t loc_in,
hid_t loc_out,
- pack_opt_t *options
+ pack_opt_t *options,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ hid_t fidout /*for saving references */
);
void read_info(const char *filename,pack_opt_t *options);
+void close_obj(H5G_obj_t obj_type, hid_t obj_id);
+
+const char* MapIdToName(hid_t refobj_id,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ pack_opt_t *options) /* repack options */;
+
+
+
+int do_copy_refobjs(hid_t fidin,
+ hid_t fidout,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ pack_opt_t *options); /* repack options */
+
+int do_copy_refobjs_inattr(hid_t loc_in,
+ hid_t loc_out,
+ pack_opt_t *options,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ hid_t fidout /* for saving references */
+ );
+
/*-------------------------------------------------------------------------
* options table
@@ -224,6 +251,16 @@ int write_attr(hid_t loc_id,
hid_t type_id,
void *buf);
+
+void write_attr_in(hid_t loc_id,
+ const char* dset_name, /* for saving reference to dataset*/
+ hid_t fid, /* for reference create */
+ int make_diffs /* flag to modify data buffers */);
+
+void write_dset_in(hid_t loc_id,
+ const char* dset_name, /* for saving reference to dataset*/
+ hid_t file_id,
+ int make_diffs /* flag to modify data buffers */);
diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c
index 5c28b17..f236889 100644
--- a/tools/h5repack/h5repack_copy.c
+++ b/tools/h5repack/h5repack_copy.c
@@ -19,8 +19,6 @@
#include "H5private.h"
#include "h5repack.h"
-
-
/*-------------------------------------------------------------------------
* Function: copy_file
*
@@ -42,7 +40,7 @@ int copy_file(const char* fnamein,
hid_t fidin;
hid_t fidout;
int nobjects;
- trav_info_t *info=NULL;
+ trav_info_t *travi=NULL;
/*-------------------------------------------------------------------------
* open the files
@@ -84,11 +82,11 @@ int copy_file(const char* fnamein,
*-------------------------------------------------------------------------
*/
- if ((info = (trav_info_t*) malloc( nobjects * sizeof(trav_info_t)))==NULL){
+ if ((travi = (trav_info_t*) malloc( nobjects * sizeof(trav_info_t)))==NULL){
printf("h5repack: <%s>: Could not allocate object list\n", fnamein );
return -1;
}
- if (h5trav_getinfo(fidin, info )<0) {
+ if (h5trav_getinfo(fidin, travi )<0) {
printf("h5repack: <%s>: Could not obtain object list\n", fnamein );
return -1;
}
@@ -97,8 +95,16 @@ int copy_file(const char* fnamein,
* do the copy
*-------------------------------------------------------------------------
*/
-
- if(do_copy_file(fidin,fidout,nobjects,info,options)<0) {
+ if(do_copy_file(fidin,fidout,nobjects,travi,options)<0) {
+ printf("h5repack: <%s>: Could not copy data to: %s\n", fnamein, fnameout);
+ return -1;
+ }
+
+/*-------------------------------------------------------------------------
+ * do the copy of referenced objects
+ *-------------------------------------------------------------------------
+ */
+ if(do_copy_refobjs(fidin,fidout,nobjects,travi,options)<0) {
printf("h5repack: <%s>: Could not copy data to: %s\n", fnamein, fnameout);
return -1;
}
@@ -109,7 +115,7 @@ int copy_file(const char* fnamein,
*/
H5Fclose(fidin);
H5Fclose(fidout);
- h5trav_freeinfo(info,nobjects);
+ h5trav_freeinfo(travi,nobjects);
return 0;
}
@@ -131,9 +137,9 @@ int copy_file(const char* fnamein,
int do_copy_file(hid_t fidin,
hid_t fidout,
- int nobjects,
- trav_info_t *info,
- pack_opt_t *options)
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ pack_opt_t *options) /* repack options */
{
hid_t grp_in; /* group ID */
hid_t grp_out; /* group ID */
@@ -152,7 +158,6 @@ int do_copy_file(hid_t fidin,
hsize_t dims[H5S_MAX_RANK];/* dimensions of dataset */
int i, j;
-
/*-------------------------------------------------------------------------
* copy the suppplied object list
*-------------------------------------------------------------------------
@@ -160,7 +165,8 @@ int do_copy_file(hid_t fidin,
for ( i = 0; i < nobjects; i++)
{
- switch ( info[i].type )
+
+ switch ( travi[i].type )
{
/*-------------------------------------------------------------------------
* H5G_GROUP
@@ -168,19 +174,19 @@ int do_copy_file(hid_t fidin,
*/
case H5G_GROUP:
if (options->verbose)
- printf(" %-10s %s\n", "group",info[i].name );
+ printf(" %-10s %s\n", "group",travi[i].name );
- if ((grp_out=H5Gcreate(fidout, info[i].name, 0))<0)
+ if ((grp_out=H5Gcreate(fidout,travi[i].name, 0))<0)
goto error;
- if((grp_in = H5Gopen (fidin, info[i].name))<0)
+ if((grp_in = H5Gopen (fidin,travi[i].name))<0)
goto error;
/*-------------------------------------------------------------------------
* copy attrs
*-------------------------------------------------------------------------
*/
- if (copy_attr(grp_in,grp_out,options)<0)
+ if (copy_attr(grp_in,grp_out,options,nobjects,travi,fidout)<0)
goto error;
if (H5Gclose(grp_out)<0)
@@ -196,9 +202,9 @@ int do_copy_file(hid_t fidin,
*/
case H5G_DATASET:
if (options->verbose)
- printf(" %-10s %s\n", "dataset",info[i].name );
+ printf(" %-10s %s\n", "dataset",travi[i].name );
- if ((dset_in=H5Dopen(fidin,info[i].name))<0)
+ if ((dset_in=H5Dopen(fidin,travi[i].name))<0)
goto error;
if ((space_id=H5Dget_space(dset_in))<0)
goto error;
@@ -210,11 +216,6 @@ int do_copy_file(hid_t fidin,
goto error;
if ( H5Sget_simple_extent_dims(space_id,dims,NULL)<0)
goto error;
-
-/*-------------------------------------------------------------------------
- * read to memory
- *-------------------------------------------------------------------------
- */
nelmts=1;
for (j=0; j<rank; j++)
nelmts*=dims[j];
@@ -222,30 +223,55 @@ int do_copy_file(hid_t fidin,
goto error;
if ((msize=H5Tget_size(mtype_id))==0)
goto error;
- buf=(void *) HDmalloc((unsigned)(nelmts*msize));
- if ( buf==NULL){
- printf( "cannot read into memory\n" );
- goto error;
- }
- if (H5Dread(dset_in,mtype_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
- goto error;
-/*-------------------------------------------------------------------------
- * create/write dataset/close
- *-------------------------------------------------------------------------
- */
- if ((dset_out=H5Dcreate(fidout,info[i].name,ftype_id,space_id,dcpl_id))<0)
- goto error;
- if (H5Dwrite(dset_out,mtype_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
- goto error;
-
/*-------------------------------------------------------------------------
- * copy attrs
+ * object references are a special case
+ * we cannot just copy the buffers, but instead we recreate the reference
+ * in a second traversal of the output file
*-------------------------------------------------------------------------
*/
- if (copy_attr(dset_in,dset_out,options)<0)
- goto error;
+ if ( ! H5Tequal(mtype_id, H5T_STD_REF_OBJ) )
+ {
+
+ /*-------------------------------------------------------------------------
+ * read to memory
+ *-------------------------------------------------------------------------
+ */
+
+ buf=(void *) HDmalloc((unsigned)(nelmts*msize));
+ if ( buf==NULL){
+ printf( "cannot read into memory\n" );
+ goto error;
+ }
+ if (H5Dread(dset_in,mtype_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ goto error;
+
+ /*-------------------------------------------------------------------------
+ * create/write dataset/close
+ *-------------------------------------------------------------------------
+ */
+ if ((dset_out=H5Dcreate(fidout,travi[i].name,ftype_id,space_id,dcpl_id))<0)
+ goto error;
+ if (H5Dwrite(dset_out,mtype_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ goto error;
+
+ /*-------------------------------------------------------------------------
+ * copy attrs
+ *-------------------------------------------------------------------------
+ */
+ if (copy_attr(dset_in,dset_out,options,nobjects,travi,fidout)<0)
+ goto error;
+
+ /*close */
+ if (H5Dclose(dset_out)<0)
+ goto error;
+
+ if (buf)
+ free(buf);
+
+ }/*H5T_STD_REF_OBJ*/
+
/*-------------------------------------------------------------------------
* close
@@ -262,11 +288,8 @@ int do_copy_file(hid_t fidin,
goto error;
if (H5Dclose(dset_in)<0)
goto error;
- if (H5Dclose(dset_out)<0)
- goto error;
+
- if (buf)
- free(buf);
break;
@@ -276,20 +299,20 @@ int do_copy_file(hid_t fidin,
*/
case H5G_TYPE:
- if ((type_in = H5Topen (fidin, info[i].name))<0)
+ if ((type_in = H5Topen (fidin,travi[i].name))<0)
goto error;
if ((type_out = H5Tcopy(type_in))<0)
goto error;
- if ((H5Tcommit(fidout, info[i].name, type_out))<0)
+ if ((H5Tcommit(fidout,travi[i].name,type_out))<0)
goto error;
/*-------------------------------------------------------------------------
* copy attrs
*-------------------------------------------------------------------------
*/
- if (copy_attr(type_in,type_out,options)<0)
+ if (copy_attr(type_in,type_out,options,nobjects,travi,fidout)<0)
goto error;
if (H5Tclose(type_in)<0)
@@ -298,10 +321,16 @@ int do_copy_file(hid_t fidin,
goto error;
if (options->verbose)
- printf(" %-10s %s\n", "datatype",info[i].name );
+ printf(" %-10s %s\n","datatype",travi[i].name );
break;
+
+/*-------------------------------------------------------------------------
+ * H5G_LINK
+ *-------------------------------------------------------------------------
+ */
+
case H5G_LINK:
{
@@ -309,32 +338,32 @@ int do_copy_file(hid_t fidin,
H5G_stat_t statbuf;
char *targbuf=NULL;
- if (H5Gget_objinfo(fidin,info[i].name,FALSE,&statbuf)<0)
+ if (H5Gget_objinfo(fidin,travi[i].name,FALSE,&statbuf)<0)
goto error;
targbuf = malloc(statbuf.linklen);
- if (H5Gget_linkval(fidin,info[i].name,statbuf.linklen,targbuf)<0)
+ if (H5Gget_linkval(fidin,travi[i].name,statbuf.linklen,targbuf)<0)
goto error;
if (H5Glink(fidout,
H5G_LINK_SOFT,
- targbuf, /* current name of object */
- info[i].name /* new name of object */
+ targbuf, /* current name of object */
+ travi[i].name /* new name of object */
)<0)
goto error;
free(targbuf);
if (options->verbose)
- printf(" %-10s %s\n", "link",info[i].name );
+ printf(" %-10s %s\n","link",travi[i].name );
}
break;
default:
if (options->verbose)
- printf(" %-10s %s\n", "User defined object", info[i].name);
+ printf(" %-10s %s\n","User defined object",travi[i].name);
break;
}
}
@@ -355,17 +384,14 @@ int do_copy_file(hid_t fidin,
if ((grp_in = H5Gopen(fidin,"/"))<0)
goto error;
- if (copy_attr(grp_in,grp_out,options)<0)
+ if (copy_attr(grp_in,grp_out,options,nobjects,travi,fidout)<0)
goto error;
if (H5Gclose(grp_out)<0)
goto error;
if (H5Gclose(grp_in)<0)
goto error;
-
-
-
-
+
return 0;
error:
@@ -407,7 +433,10 @@ error:
int copy_attr(hid_t loc_in,
hid_t loc_out,
- pack_opt_t *options
+ pack_opt_t *options,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ hid_t fidout /* for saving references */
)
{
hid_t attr_id; /* attr ID */
@@ -415,20 +444,26 @@ int copy_attr(hid_t loc_in,
hid_t space_id; /* space ID */
hid_t ftype_id; /* file data type ID */
hid_t mtype_id; /* memory data type ID */
- size_t msize; /* memory size of memory type */
- void *buf=NULL; /* data buffer */
+ size_t msize; /* memory size of type */
+ void *buf; /* data buffer */
hsize_t nelmts; /* number of elements in dataset */
int rank; /* rank of dataset */
hsize_t dims[H5S_MAX_RANK];/* dimensions of dataset */
char name[255];
int n, j;
- unsigned u;
+ unsigned u;
+ int have_ref=0;
if ((n = H5Aget_num_attrs(loc_in))<0)
goto error;
for ( u = 0; u < (unsigned)n; u++)
{
+
+ /* set data buffer to NULL each iteration
+ we might not use it in the case of references
+ */
+ buf=NULL;
/*-------------------------------------------------------------------------
* open
*-------------------------------------------------------------------------
@@ -452,18 +487,31 @@ int copy_attr(hid_t loc_in,
/* get dimensions */
if ( (rank = H5Sget_simple_extent_dims(space_id, dims, NULL)) < 0 )
goto error;
-
+
+ nelmts=1;
+ for (j=0; j<rank; j++)
+ nelmts*=dims[j];
+ if ((mtype_id=H5Tget_native_type(ftype_id,H5T_DIR_DEFAULT))<0)
+ goto error;
+ if ((msize=H5Tget_size(mtype_id))==0)
+ goto error;
+
/*-------------------------------------------------------------------------
- * read to memory
+ * object references are a special case
+ * we cannot just copy the buffers, but instead we recreate the reference
+ * this is done on a second sweep of the file that just copies
+ * the referenced objects
*-------------------------------------------------------------------------
*/
- nelmts=1;
- for (j=0; j<rank; j++)
- nelmts*=dims[j];
- if ((mtype_id=H5Tget_native_type(ftype_id,H5T_DIR_DEFAULT))<0)
- goto error;
- if ((msize=H5Tget_size(mtype_id))==0)
- goto error;
+ if ( ! H5Tequal(mtype_id, H5T_STD_REF_OBJ))
+ {
+
+
+ /*-------------------------------------------------------------------------
+ * read to memory
+ *-------------------------------------------------------------------------
+ */
+
buf=(void *) HDmalloc((unsigned)(nelmts*msize));
if ( buf==NULL){
printf( "cannot read into memory\n" );
@@ -471,17 +519,28 @@ int copy_attr(hid_t loc_in,
}
if (H5Aread(attr_id,mtype_id,buf)<0)
goto error;
-
-/*-------------------------------------------------------------------------
- * copy
- *-------------------------------------------------------------------------
- */
+ /*-------------------------------------------------------------------------
+ * copy
+ *-------------------------------------------------------------------------
+ */
+
+ if ((attr_out=H5Acreate(loc_out,name,ftype_id,space_id,H5P_DEFAULT))<0)
+ goto error;
+ if(H5Awrite(attr_out,mtype_id,buf)<0)
+ goto error;
+
+ /*close*/
+ if (H5Aclose(attr_out)<0)
+ goto error;
+
+
+ if (buf)
+ free(buf);
+
+
+ } /*H5T_STD_REF_OBJ*/
- if ((attr_out=H5Acreate(loc_out,name,ftype_id,space_id,H5P_DEFAULT))<0)
- goto error;
- if(H5Awrite(attr_out,mtype_id,buf)<0)
- goto error;
if (options->verbose)
printf(" %-13s %s\n", "attr", name);
@@ -495,9 +554,7 @@ int copy_attr(hid_t loc_in,
if (H5Tclose(mtype_id)<0) goto error;
if (H5Sclose(space_id)<0) goto error;
if (H5Aclose(attr_id)<0) goto error;
- if (H5Aclose(attr_out)<0) goto error;
- if (buf)
- free(buf);
+
} /* u */
return 0;
@@ -514,3 +571,5 @@ error:
} H5E_END_TRY;
return -1;
}
+
+
diff --git a/tools/h5repack/h5repack_refs.c b/tools/h5repack/h5repack_refs.c
new file mode 100644
index 0000000..cd5fe80
--- /dev/null
+++ b/tools/h5repack/h5repack_refs.c
@@ -0,0 +1,600 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#include <stdlib.h>
+#include <string.h>
+#include <stdio.h>
+#include "H5private.h"
+#include "h5repack.h"
+
+
+/*-------------------------------------------------------------------------
+ * Function: do_copy_refobjs
+ *
+ * Purpose: duplicate all referenced HDF5 objects in the file
+ *
+ * Return: 0, ok, -1 no
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: December, 10, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int do_copy_refobjs(hid_t fidin,
+ hid_t fidout,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ pack_opt_t *options) /* repack options */
+{
+ hid_t grp_in; /* group ID */
+ hid_t grp_out; /* group ID */
+ hid_t dset_in; /* read dataset ID */
+ hid_t dset_out; /* write dataset ID */
+ hid_t type_in; /* named type ID */
+ hid_t dcpl_id; /* dataset creation property list ID */
+ hid_t space_id; /* space ID */
+ hid_t ftype_id; /* file data type ID */
+ hid_t mtype_id; /* memory data type ID */
+ size_t msize; /* memory size of memory type */
+ hsize_t nelmts; /* number of elements in dataset */
+ int rank; /* rank of dataset */
+ hsize_t dims[H5S_MAX_RANK];/* dimensions of dataset */
+ int i, j;
+
+ /* initialize to test for non reference cases */
+
+/*-------------------------------------------------------------------------
+ * browse
+ *-------------------------------------------------------------------------
+ */
+
+ for ( i = 0; i < nobjects; i++)
+ {
+
+ switch ( travi[i].type )
+ {
+ /*-------------------------------------------------------------------------
+ * H5G_GROUP
+ *-------------------------------------------------------------------------
+ */
+ case H5G_GROUP:
+
+ if((grp_in = H5Gopen (fidin,travi[i].name))<0)
+ goto error;
+
+ if (H5Gclose(grp_in)<0)
+ goto error;
+
+ break;
+
+ /*-------------------------------------------------------------------------
+ * H5G_DATASET
+ *-------------------------------------------------------------------------
+ */
+ case H5G_DATASET:
+
+ if ((dset_in=H5Dopen(fidin,travi[i].name))<0)
+ goto error;
+ if ((space_id=H5Dget_space(dset_in))<0)
+ goto error;
+ if ((ftype_id=H5Dget_type (dset_in))<0)
+ goto error;
+ if ((dcpl_id=H5Dget_create_plist(dset_in))<0)
+ goto error;
+ if ( (rank=H5Sget_simple_extent_ndims(space_id))<0)
+ goto error;
+ if ( H5Sget_simple_extent_dims(space_id,dims,NULL)<0)
+ goto error;
+ nelmts=1;
+ for (j=0; j<rank; j++)
+ nelmts*=dims[j];
+ if ((mtype_id=H5Tget_native_type(ftype_id,H5T_DIR_DEFAULT))<0)
+ goto error;
+ if ((msize=H5Tget_size(mtype_id))==0)
+ goto error;
+
+
+/*-------------------------------------------------------------------------
+ * object references are a special case
+ * we cannot just copy the buffers, but instead we recreate the reference
+ *-------------------------------------------------------------------------
+ */
+ if (H5Tequal(mtype_id, H5T_STD_REF_OBJ))
+ {
+ H5G_obj_t obj_type;
+ hid_t refobj_id;
+ hobj_ref_t *refbuf;
+ const char* refname;
+ hobj_ref_t *buf;
+
+ /*-------------------------------------------------------------------------
+ * read to memory
+ *-------------------------------------------------------------------------
+ */
+
+ buf=(void *) HDmalloc((unsigned)(nelmts*msize));
+ if ( buf==NULL){
+ printf( "cannot read into memory\n" );
+ goto error;
+ }
+ if (H5Dread(dset_in,mtype_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ goto error;
+
+
+ if ((obj_type = H5Rget_obj_type(dset_in,H5R_OBJECT,buf))<0)
+ goto error;
+ refbuf=HDmalloc((unsigned)nelmts*msize);
+ if ( refbuf==NULL){
+ printf( "cannot allocate memory\n" );
+ goto error;
+ }
+ for ( j=0; j<nelmts; j++)
+ {
+ if ((refobj_id = H5Rdereference(dset_in,H5R_OBJECT,&buf[j]))<0)
+ goto error;
+
+ /* get the name. a valid name could only occur in the
+ second traversal of the file */
+ if ((refname=MapIdToName(refobj_id,nobjects,travi,options))!=NULL)
+ {
+ /* create the reference */
+ if (H5Rcreate(&refbuf[j],fidout,refname,H5R_OBJECT,-1)<0)
+ goto error;
+
+ if (options->verbose)
+ printf("object <%s> reference created to <%s>\n",travi[i].name,refname);
+ }
+ close_obj(obj_type,refobj_id);
+ }/* j */
+
+
+
+ /*-------------------------------------------------------------------------
+ * create/write dataset/close
+ *-------------------------------------------------------------------------
+ */
+ if ((dset_out=H5Dcreate(fidout,travi[i].name,ftype_id,space_id,dcpl_id))<0)
+ goto error;
+ if (H5Dwrite(dset_out,mtype_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,refbuf)<0)
+ goto error;
+
+ free(buf);
+ free(refbuf);
+
+ }/*H5T_STD_REF_OBJ*/
+
+
+ /*-------------------------------------------------------------------------
+ * open previously created object in 1st traversal
+ *-------------------------------------------------------------------------
+ */
+
+ else
+ {
+ if ((dset_out=H5Dopen(fidout,travi[i].name))<0)
+ goto error;
+ }
+
+ /*-------------------------------------------------------------------------
+ * copy referenced objects in attributes
+ *-------------------------------------------------------------------------
+ */
+
+ if (do_copy_refobjs_inattr(dset_in,dset_out,options,nobjects,travi,fidout)<0)
+ goto error;
+
+
+ /*-------------------------------------------------------------------------
+ * close
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Tclose(ftype_id)<0)
+ goto error;
+ if (H5Tclose(mtype_id)<0)
+ goto error;
+ if (H5Pclose(dcpl_id)<0)
+ goto error;
+ if (H5Sclose(space_id)<0)
+ goto error;
+ if (H5Dclose(dset_in)<0)
+ goto error;
+ if (H5Dclose(dset_out)<0)
+ goto error;
+
+
+ break;
+
+ /*-------------------------------------------------------------------------
+ * H5G_TYPE
+ *-------------------------------------------------------------------------
+ */
+ case H5G_TYPE:
+
+ if ((type_in = H5Topen (fidin,travi[i].name))<0)
+ goto error;
+
+ if (H5Tclose(type_in)<0)
+ goto error;
+
+
+ break;
+
+
+ /*-------------------------------------------------------------------------
+ * H5G_LINK
+ *-------------------------------------------------------------------------
+ */
+
+ case H5G_LINK:
+
+ /*nothing to do */
+ break;
+
+ default:
+
+ break;
+ }
+ }
+
+
+
+/*-------------------------------------------------------------------------
+ * the root is a special case, we get an ID for the root group
+ * and copy its attributes using that ID
+ * it must be done last, because the attributes might contain references to
+ * objects in the object list
+ *-------------------------------------------------------------------------
+ */
+
+ if ((grp_out = H5Gopen(fidout,"/"))<0)
+ goto error;
+
+ if ((grp_in = H5Gopen(fidin,"/"))<0)
+ goto error;
+
+ if (do_copy_refobjs_inattr(grp_in,grp_out,options,nobjects,travi,fidout)<0)
+ goto error;
+
+ if (H5Gclose(grp_out)<0)
+ goto error;
+ if (H5Gclose(grp_in)<0)
+ goto error;
+
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ H5Gclose(grp_in);
+ H5Gclose(grp_out);
+ H5Pclose(dcpl_id);
+ H5Sclose(space_id);
+ H5Dclose(dset_in);
+ H5Dclose(dset_out);
+ H5Tclose(ftype_id);
+ H5Tclose(mtype_id);
+ H5Tclose(type_in);
+ } H5E_END_TRY;
+ return -1;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: do_copy_refobjs_inattr
+ *
+ * Purpose: copy attributes located in LOC_IN, which is obtained either from
+ * loc_id = H5Gopen( fid, name);
+ * loc_id = H5Dopen( fid, name);
+ * loc_id = H5Topen( fid, name);
+ *
+ * Return: 0, ok, -1 no
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: October, 28, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int do_copy_refobjs_inattr(hid_t loc_in,
+ hid_t loc_out,
+ pack_opt_t *options,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ hid_t fidout /* for saving references */
+ )
+{
+ hid_t attr_id; /* attr ID */
+ hid_t attr_out; /* attr ID */
+ hid_t space_id; /* space ID */
+ hid_t ftype_id; /* file data type ID */
+ hid_t mtype_id; /* memory data type ID */
+ size_t msize; /* memory size of type */
+ hsize_t nelmts; /* number of elements in dataset */
+ int rank; /* rank of dataset */
+ hsize_t dims[H5S_MAX_RANK];/* dimensions of dataset */
+ char name[255];
+ int n, j;
+ unsigned u;
+
+ if ((n = H5Aget_num_attrs(loc_in))<0)
+ goto error;
+
+ for ( u = 0; u < (unsigned)n; u++)
+ {
+
+/*-------------------------------------------------------------------------
+ * open
+ *-------------------------------------------------------------------------
+ */
+ /* open attribute */
+ if ((attr_id = H5Aopen_idx(loc_in, u))<0)
+ goto error;
+
+ /* get name */
+ if (H5Aget_name( attr_id, 255, name )<0)
+ goto error;
+
+ /* get the file datatype */
+ if ((ftype_id = H5Aget_type( attr_id )) < 0 )
+ goto error;
+
+ /* get the dataspace handle */
+ if ((space_id = H5Aget_space( attr_id )) < 0 )
+ goto error;
+
+ /* get dimensions */
+ if ( (rank = H5Sget_simple_extent_dims(space_id, dims, NULL)) < 0 )
+ goto error;
+
+
+ /*-------------------------------------------------------------------------
+ * elements
+ *-------------------------------------------------------------------------
+ */
+ nelmts=1;
+ for (j=0; j<rank; j++)
+ nelmts*=dims[j];
+ if ((mtype_id=H5Tget_native_type(ftype_id,H5T_DIR_DEFAULT))<0)
+ goto error;
+ if ((msize=H5Tget_size(mtype_id))==0)
+ goto error;
+
+
+
+/*-------------------------------------------------------------------------
+ * object references are a special case
+ * we cannot just copy the buffers, but instead we recreate the reference
+ *-------------------------------------------------------------------------
+ */
+ if (H5Tequal(mtype_id, H5T_STD_REF_OBJ))
+ {
+ H5G_obj_t obj_type;
+ hid_t refobj_id;
+ hobj_ref_t *refbuf;
+ int i;
+ const char* refname;
+ hobj_ref_t *buf;
+
+
+ buf=(void *) HDmalloc((unsigned)(nelmts*msize));
+ if ( buf==NULL){
+ printf( "cannot read into memory\n" );
+ goto error;
+ }
+ if (H5Aread(attr_id,mtype_id,buf)<0)
+ goto error;
+
+ if ((obj_type = H5Rget_obj_type(attr_id,H5R_OBJECT,buf))<0)
+ goto error;
+ refbuf=HDmalloc((unsigned)nelmts*msize);
+ if ( refbuf==NULL){
+ printf( "cannot allocate memory\n" );
+ goto error;
+ }
+ for ( i=0; i<nelmts; i++)
+ {
+ if ((refobj_id = H5Rdereference(attr_id,H5R_OBJECT,&buf[i]))<0)
+ goto error;
+
+ /* get the name. a valid name could only occur in the
+ second traversal of the file */
+ if ((refname=MapIdToName(refobj_id,nobjects,travi,options))!=NULL)
+ {
+ /* create the reference */
+ if (H5Rcreate(&refbuf[i],fidout,refname,H5R_OBJECT,-1)<0)
+ goto error;
+
+ if (options->verbose)
+ printf("object <%s> reference created to <%s>\n",name,refname);
+ }
+ close_obj(obj_type,refobj_id);
+ }/* i */
+
+
+ /*-------------------------------------------------------------------------
+ * copy
+ *-------------------------------------------------------------------------
+ */
+
+ if ((attr_out=H5Acreate(loc_out,name,ftype_id,space_id,H5P_DEFAULT))<0)
+ goto error;
+ if(H5Awrite(attr_out,mtype_id,refbuf)<0)
+ goto error;
+
+ if (H5Aclose(attr_out)<0)
+ goto error;
+
+ free(refbuf);
+ free(buf);
+
+ }/*H5T_STD_REF_OBJ*/
+
+
+/*-------------------------------------------------------------------------
+ * close
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Tclose(ftype_id)<0) goto error;
+ if (H5Tclose(mtype_id)<0) goto error;
+ if (H5Sclose(space_id)<0) goto error;
+ if (H5Aclose(attr_id)<0) goto error;
+ } /* u */
+
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ H5Tclose(ftype_id);
+ H5Tclose(mtype_id);
+ H5Sclose(space_id);
+ H5Aclose(attr_id);
+ H5Aclose(attr_out);
+ } H5E_END_TRY;
+ return -1;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: close_obj
+ *
+ * Purpose: Auxiliary function to close an object
+ *
+ *-------------------------------------------------------------------------
+ */
+
+static void close_obj(H5G_obj_t obj_type, hid_t obj_id)
+{
+
+ switch (obj_type) {
+ case H5G_GROUP:
+ H5Gclose(obj_id);
+ break;
+ case H5G_DATASET:
+ H5Dclose(obj_id);
+ break;
+ case H5G_TYPE:
+ H5Tclose(obj_id);
+ break;
+ default:
+ assert(0);
+ break;
+ }
+}
+
+/*-------------------------------------------------------------------------
+ * Function: MapIdToName
+ *
+ * Purpose: map an object ID to a name
+ *
+ *-------------------------------------------------------------------------
+ */
+
+const char* MapIdToName(hid_t refobj_id,
+ int nobjects, /* number of objects */
+ trav_info_t *travi, /* array of object names */
+ pack_opt_t *options) /* repack options */
+{
+ hid_t id;
+ hid_t fid;
+ int i;
+
+ if ((fid = H5Iget_file_id(refobj_id))<0)
+ {
+ assert(0);
+ return NULL;
+ }
+
+
+ for ( i=0; i<nobjects; i++)
+ {
+ switch ( travi[i].type )
+ {
+
+ /*-------------------------------------------------------------------------
+ * H5G_GROUP
+ *-------------------------------------------------------------------------
+ */
+
+ case H5G_GROUP:
+
+
+ break;
+
+ /*-------------------------------------------------------------------------
+ * H5G_DATASET
+ *-------------------------------------------------------------------------
+ */
+
+ case H5G_DATASET:
+
+ if ((id = H5Dopen(fid,travi[i].name))<0)
+ {
+ assert(0);
+ return NULL;
+ }
+
+ if (H5Dclose(id)<0)
+ {
+ assert(0);
+ return NULL;
+ }
+
+ if (id==refobj_id)
+ {
+ H5Fclose(fid);
+ return travi[i].name;
+ }
+
+
+ break;
+
+ /*-------------------------------------------------------------------------
+ * H5G_TYPE
+ *-------------------------------------------------------------------------
+ */
+
+ case H5G_TYPE:
+
+
+
+ break;
+
+
+ /*-------------------------------------------------------------------------
+ * H5G_LINK
+ *-------------------------------------------------------------------------
+ */
+
+ case H5G_LINK:
+ break;
+
+ default:
+ assert(0);
+ break;
+
+ }
+
+
+ } /* i */
+
+ if (H5Fclose(fid)<0)
+ return NULL;
+
+ return NULL;
+}
diff --git a/tools/h5repack/test_h5repack_add.c b/tools/h5repack/testh5repack_attr.c
index 40a7af5..9862b80 100644
--- a/tools/h5repack/test_h5repack_add.c
+++ b/tools/h5repack/testh5repack_attr.c
@@ -16,190 +16,6 @@
#include "h5test.h"
#include "h5repack.h"
-
-/*-------------------------------------------------------------------------
- * Function: make_deflate
- *
- * Purpose: make a dataset using DEFLATE (GZIP) compression in FID
- *
- * Return: Success: zero
- * Failure: 1
- *
- * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
- * September, 19, 2003
- *
- *-------------------------------------------------------------------------
- */
-static int
-make_deflate(hid_t fid)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t dsid; /* dataset ID */
- hid_t sid; /* dataspace ID */
- int rank=2;
- hsize_t dims[2]={4,2};
- hsize_t chunk_dims[2]={2,1};
- int buf[4][2]={{1,2},{3,4},{5,6},{7,8}};
-
- /* create a space */
- if((sid = H5Screate_simple(rank, dims, NULL))<0)
- TEST_ERROR;
-
- /* create the dataset creation property list */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
- TEST_ERROR;
-
- /* set up for deflated data */
- if(H5Pset_chunk(dcpl, rank, chunk_dims)<0)
- TEST_ERROR;
- if(H5Pset_deflate(dcpl, 9)<0)
- TEST_ERROR;
-
- /* create the dataset */
- if((dsid = H5Dcreate (fid, "dset_gzip", H5T_NATIVE_INT, sid, dcpl))<0)
- TEST_ERROR;
-
- /* write the data to the dataset */
- if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)<0)
- TEST_ERROR;
-
- /* close */
- if(H5Dclose(dsid)<0)
- TEST_ERROR;
- if(H5Pclose(dcpl)<0)
- TEST_ERROR;
- if(H5Sclose(sid)<0)
- TEST_ERROR;
-
- return 0;
-
-error:
- return 1;
-}
-
-/*-------------------------------------------------------------------------
- * Function: make_szip
- *
- * Purpose: make a dataset using SZIP compression in FID
- *
- * Return: Success: zero
- * Failure: 1
- *
- * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
- * September, 19, 2003
- *
- *-------------------------------------------------------------------------
- */
-static int
-make_szip(hid_t fid)
-{
- hid_t dcpl; /* dataset creation property list */
- hid_t dsid; /* dataset ID */
- hid_t sid; /* dataspace ID */
- int rank=2;
- hsize_t dims[2]={4,2};
- hsize_t chunk_dims[2]={2,1};
- int buf[4][2]={{1,2},{3,4},{5,6},{7,8}};
- unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
- unsigned szip_pixels_per_block;
-
- /*
- pixels_per_block must be an even number, and <= pixels_per_scanline
- and <= MAX_PIXELS_PER_BLOCK
- */
- szip_pixels_per_block=16;
-
- /* create a space */
- if((sid = H5Screate_simple(rank, dims, NULL))<0)
- TEST_ERROR;
-
- /* create the dataset creation property list */
- if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
- TEST_ERROR;
-
- /* set up for sziped data */
- if(H5Pset_chunk(dcpl, rank, chunk_dims)<0)
- TEST_ERROR;
- if(H5Pset_szip (dcpl, szip_options_mask, szip_pixels_per_block)<0)
- TEST_ERROR;
-
- /* create the dataset */
- if((dsid = H5Dcreate (fid, "dset_szip", H5T_NATIVE_INT, sid, dcpl))<0)
- TEST_ERROR;
-
- /* write the data to the dataset */
- if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)<0)
- TEST_ERROR;
-
- /* close */
- if(H5Dclose(dsid)<0)
- TEST_ERROR;
- if(H5Pclose(dcpl)<0)
- TEST_ERROR;
- if(H5Sclose(sid)<0)
- TEST_ERROR;
-
- return 0;
-
-error:
- return 1;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: make_testfile
- *
- * Purpose: make a test file with all types of HDF5 objects,
- * datatypes and filters
- *
- * Return: Success: zero
- * Failure: 1
- *
- * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
- * September, 19, 2003
- *
- *-------------------------------------------------------------------------
- */
-int make_testfiles(void)
-{
- hid_t fid; /* file ID */
- int nerrors=0;
-
- TESTING(" generating datasets");
-
- /* create a file for the copy test */
- if((fid = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
- TEST_ERROR;
-
- nerrors += make_all_objects(fid);
-
- /* close */
- if(H5Fclose(fid)<0)
- TEST_ERROR;
-
- /* create a file for the filters test */
- if((fid = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
- TEST_ERROR;
-
- nerrors += make_deflate(fid);
- nerrors += make_szip(fid);
-
- /* close */
- if(H5Fclose(fid)<0)
- TEST_ERROR;
-
- if (nerrors)
- goto error;
-
- PASSED();
- return 0;
-
-error:
- return 1;
-}
-
-
-
/*-------------------------------------------------------------------------
* Function: write_attr_in
*
@@ -1213,77 +1029,6 @@ etc
-/*-------------------------------------------------------------------------
- * Check all HDF5 classes
- * H5T_INTEGER, H5T_FLOAT
- * H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE,
- * H5T_ENUM, H5T_VLEN, H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
-
-int make_attr(hid_t fid)
-{
- hid_t dset_id;
- hid_t group_id;
- hid_t root_id;
- hid_t space_id;
- hsize_t dims[1]={2};
-
- /* Create a 1D dataset */
- space_id = H5Screate_simple(1,dims,NULL);
- dset_id = H5Dcreate(fid,"dset_ref",H5T_NATIVE_INT,space_id,H5P_DEFAULT);
- H5Sclose(space_id);
-
- /* Create groups */
- group_id = H5Gcreate(fid,"g1",0);
- root_id = H5Gopen(fid, "/");
-
-/*-------------------------------------------------------------------------
- * write a series of attributes on the dataset, group, and root group
- *-------------------------------------------------------------------------
- */
-
- write_attr_in(dset_id,"dset_ref",fid,0);
- write_attr_in(group_id,"dset_ref",fid,0);
- write_attr_in(root_id,"dset_ref",fid,0);
-
-
- /* Close */
- H5Dclose(dset_id);
- H5Gclose(group_id);
- H5Gclose(root_id);
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: make_all_objects
- *
- * Purpose: make a test file with all types of HDF5 objects, datatypes
- *
- * Return: Success: zero
- * Failure: 1
- *
- * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
- * September, 19, 2003
- *
- *-------------------------------------------------------------------------
- */
-int make_all_objects(hid_t fid)
-{
-
-
- /* create attributes */
- if((make_attr(fid))<0)
- TEST_ERROR;
-
- return 0;
-
-error:
- return 1;
-}
@@ -1327,48 +1072,3 @@ int write_attr(hid_t loc_id,
return status;
}
-/*-------------------------------------------------------------------------
- * Function: write_dset
- *
- * Purpose: utility function to create and write a dataset in LOC_ID
- *
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
- *
- * Date: November 12, 2003
- *
- *-------------------------------------------------------------------------
- */
-
-
-int write_dset( hid_t loc_id,
- int rank,
- hsize_t *dims,
- const char *dset_name,
- hid_t type_id,
- void *buf )
-{
- hid_t dset_id;
- hid_t space_id;
- herr_t status;
-
- /* Create a buf space */
- space_id = H5Screate_simple(rank,dims,NULL);
-
- /* Create a dataset */
- dset_id = H5Dcreate(loc_id,dset_name,type_id,space_id,H5P_DEFAULT);
-
- /* Write the buf */
- if ( buf )
- status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf);
-
- /* Close */
- status = H5Dclose(dset_id);
- status = H5Sclose(space_id);
-
- return status;
-
-}
-
-
-
-
diff --git a/tools/h5repack/testh5repack_dset.c b/tools/h5repack/testh5repack_dset.c
new file mode 100644
index 0000000..e5fe500
--- /dev/null
+++ b/tools/h5repack/testh5repack_dset.c
@@ -0,0 +1,668 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "h5test.h"
+#include "h5repack.h"
+
+/*-------------------------------------------------------------------------
+ * Function: write_dset
+ *
+ * Purpose: utility function to create and write a dataset in LOC_ID
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: November 12, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int write_dset( hid_t loc_id,
+ int rank,
+ hsize_t *dims,
+ const char *dset_name,
+ hid_t type_id,
+ void *buf )
+{
+ hid_t dset_id;
+ hid_t space_id;
+
+ /* Create a buf space */
+ if ((space_id = H5Screate_simple(rank,dims,NULL))<0)
+ return -1;
+
+ /* Create a dataset */
+ if ((dset_id = H5Dcreate(loc_id,dset_name,type_id,space_id,H5P_DEFAULT))<0)
+ return -1;
+
+ /* Write the buf */
+ if ( buf )
+ if (H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ return -1;
+
+ /* Close */
+ if (H5Dclose(dset_id)<0)
+ return -1;
+ if (H5Sclose(space_id)<0)
+ return -1;
+
+ return 0;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: write_dset_in
+ *
+ * Purpose: write datasets in LOC_ID
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: November 12, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+void write_dset_in(hid_t loc_id,
+ const char* dset_name, /* for saving reference to dataset*/
+ hid_t file_id,
+ int make_diffs /* flag to modify data buffers */)
+{
+ /* Compound datatype */
+ typedef struct s_t
+ {
+ char a;
+ double b;
+ } s_t;
+
+ typedef enum
+ {
+ RED,
+ GREEN
+ } e_t;
+
+ hid_t dset_id;
+ hid_t space_id;
+ hid_t type_id;
+ hid_t plist_id;
+ herr_t status;
+ int val, i, j, k, n;
+ float f;
+ int fillvalue=2;
+
+ /* create 1D attributes with dimension [2], 2 elements */
+ hsize_t dims[1]={2};
+ char buf1[2][2]= {"ab","de"}; /* string */
+ char buf2[2]= {1,2}; /* bitfield, opaque */
+ s_t buf3[2]= {{1,2},{3,4}}; /* compound */
+ hobj_ref_t buf4[2]; /* reference */
+ e_t buf45[2]= {RED,GREEN}; /* enum */
+ hvl_t buf5[2]; /* vlen */
+ hsize_t dimarray[1]={3}; /* array dimension */
+ int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
+ int buf7[2]= {1,2}; /* integer */
+ float buf8[2]= {1,2}; /* float */
+
+ /* create 2D attributes with dimension [3][2], 6 elements */
+ hsize_t dims2[2]={3,2};
+ char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */
+ char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
+ s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
+ hobj_ref_t buf42[3][2]; /* reference */
+ e_t buf452[3][2]; /* enum */
+ hvl_t buf52[3][2]; /* vlen */
+ int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
+ int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
+ float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
+
+ /* create 3D attributes with dimension [4][3][2], 24 elements */
+ hsize_t dims3[3]={4,3,2};
+ char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
+ "rs","tu","vw","xz","AB","CD","EF","GH",
+ "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
+ char buf23[4][3][2]; /* bitfield, opaque */
+ s_t buf33[4][3][2]; /* compound */
+ hobj_ref_t buf43[4][3][2]; /* reference */
+ e_t buf453[4][3][2]; /* enum */
+ hvl_t buf53[4][3][2]; /* vlen */
+ int buf63[24][3]; /* array */
+ int buf73[4][3][2]; /* integer */
+ float buf83[4][3][2]; /* float */
+
+
+/*-------------------------------------------------------------------------
+ * 1D
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ for (j=0; j<2; j++)
+ {
+ buf1[i][j]='z';
+ }
+ }
+
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ write_dset(loc_id,1,dims,"string",type_id,buf1);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ buf2[i]=buf2[1]=0;
+ }
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ write_dset(loc_id,1,dims,"bitfield",type_id,buf2);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf3[i].a=0; buf3[i].b=0;
+ }
+ }
+
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ write_dset(loc_id,1,dims,"opaque",type_id,buf2);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf45[i]=GREEN;
+ }
+ }
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ write_dset(loc_id,1,dims,"compound",type_id,buf3);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* Create references to dataset */
+ if (dset_name)
+ {
+ status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1);
+ status=H5Rcreate(&buf4[1],file_id,dset_name,H5R_OBJECT,-1);
+ write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4);
+ }
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ write_dset(loc_id,1,dims,"enum",type_id,buf45);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+ /* Allocate and initialize VL dataset to write */
+
+ buf5[0].len = 1;
+ buf5[0].p = malloc( 1 * sizeof(int));
+ ((int *)buf5[0].p)[0]=1;
+ buf5[1].len = 2;
+ buf5[1].p = malloc( 2 * sizeof(int));
+ ((int *)buf5[1].p)[0]=2;
+ ((int *)buf5[1].p)[1]=3;
+
+ if (make_diffs)
+ {
+ ((int *)buf5[0].p)[0]=0;
+ ((int *)buf5[1].p)[0]=0;
+ ((int *)buf5[1].p)[1]=0;
+ }
+
+ space_id = H5Screate_simple(1,dims,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ dset_id = H5Dcreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT);
+ status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf5);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5);
+ assert(status>=0);
+ status = H5Dclose(dset_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ for (j=0; j<3; j++)
+ {
+ buf6[i][j]=0;
+ }
+ }
+
+ type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
+ write_dset(loc_id,1,dims,"array",type_id,buf6);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER and H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf7[i]=0;
+ buf8[i]=0;
+ }
+ }
+
+ write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
+ write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
+
+
+/*-------------------------------------------------------------------------
+ * 2D
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf12, 'z', sizeof buf12);
+ }
+
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ write_dset(loc_id,2,dims2,"string2D",type_id,buf12);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ memset(buf22,0,sizeof buf22);
+ }
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ write_dset(loc_id,2,dims2,"bitfield2D",type_id,buf22);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ write_dset(loc_id,2,dims2,"opaque2D",type_id,buf22);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf32,0,sizeof buf32);
+ }
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ write_dset(loc_id,2,dims2,"compound2D",type_id,buf32);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* Create references to dataset */
+ if (dset_name)
+ {
+ for (i = 0; i < 3; i++) {
+ for (j = 0; j < 2; j++) {
+ status=H5Rcreate(&buf42[i][j],file_id,dset_name,H5R_OBJECT,-1);
+ }
+ }
+ write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42);
+ }
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+
+ for (i=0; i<3; i++)
+ for (j=0; j<2; j++)
+ {
+ if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
+ }
+
+
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ write_dset(loc_id,2,dims2,"enum2D",type_id,0);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+/* Allocate and initialize VL dataset to write */
+ n=0;
+ for (i = 0; i < 3; i++) {
+ for (j = 0; j < 2; j++) {
+ int l;
+ buf52[i][j].p = malloc((i + 1) * sizeof(int));
+ buf52[i][j].len = i + 1;
+ for (l = 0; l < i + 1; l++)
+ if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
+ else ((int *)buf52[i][j].p)[l] = n++;
+ }
+ }
+
+ space_id = H5Screate_simple(2,dims2,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ dset_id = H5Dcreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT);
+ status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf52);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52);
+ assert(status>=0);
+ status = H5Dclose(dset_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf62,0,sizeof buf62);
+ }
+
+
+ type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
+ write_dset(loc_id,2,dims2,"array2D",type_id,buf62);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER, write a fill value
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ memset(buf72,0,sizeof buf72);
+ memset(buf82,0,sizeof buf82);
+ }
+
+
+ plist_id = H5Pcreate(H5P_DATASET_CREATE);
+ status = H5Pset_fill_value(plist_id, H5T_NATIVE_INT, &fillvalue);
+ space_id = H5Screate_simple(2,dims2,NULL);
+ dset_id = H5Dcreate(loc_id,"integer2D",H5T_NATIVE_INT,space_id,plist_id);
+ status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf72);
+ status = H5Pclose(plist_id);
+ status = H5Dclose(dset_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+
+ write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
+
+
+/*-------------------------------------------------------------------------
+ * 3D
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf13,'z',sizeof buf13);
+ }
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ write_dset(loc_id,3,dims3,"string3D",type_id,buf13);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+
+ n=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) buf23[i][j][k]=0;
+ else buf23[i][j][k]=n++;
+ }
+ }
+ }
+
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ write_dset(loc_id,3,dims3,"bitfield3D",type_id,buf23);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ write_dset(loc_id,3,dims3,"opaque3D",type_id,buf23);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+ n=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) {
+ buf33[i][j][k].a=0;
+ buf33[i][j][k].b=0;
+ }
+ else {
+ buf33[i][j][k].a=n++;
+ buf33[i][j][k].b=n++;
+ }
+ }
+ }
+ }
+
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ write_dset(loc_id,3,dims3,"compound3D",type_id,buf33);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* Create references to dataset */
+ if (dset_name)
+ {
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++)
+ status=H5Rcreate(&buf43[i][j][k],file_id,dset_name,H5R_OBJECT,-1);
+ }
+ }
+ write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43);
+ }
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+
+
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN;
+ }
+ }
+ }
+
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ write_dset(loc_id,3,dims3,"enum3D",type_id,0);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+ /* Allocate and initialize VL dataset to write */
+ n=0;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ int l;
+ buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
+ buf53[i][j][k].len = i + 1;
+ for (l = 0; l < i + 1; l++)
+ if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0;
+ else ((int *)buf53[i][j][k].p)[l] = n++;
+ }
+ }
+ }
+
+ space_id = H5Screate_simple(3,dims3,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ dset_id = H5Dcreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT);
+ status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf53);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53);
+ assert(status>=0);
+ status = H5Dclose(dset_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+
+ n=1;
+ for (i = 0; i < 24; i++) {
+ for (j = 0; j < (int)dimarray[0]; j++) {
+ if (make_diffs) buf63[i][j]=0;
+ else buf63[i][j]=n++;
+ }
+ }
+
+ type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
+ write_dset(loc_id,3,dims3,"array3D",type_id,buf63);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER and H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+ n=1; f=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) {
+ buf73[i][j][k]=0;
+ buf83[i][j][k]=0;
+ }
+ else {
+ buf73[i][j][k]=n++;
+ buf83[i][j][k]=f++;
+ }
+ }
+ }
+ }
+ write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
+ write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
+}
+
diff --git a/tools/h5repack/testh5repack_filters.c b/tools/h5repack/testh5repack_filters.c
new file mode 100644
index 0000000..36abc06
--- /dev/null
+++ b/tools/h5repack/testh5repack_filters.c
@@ -0,0 +1,295 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "h5test.h"
+#include "h5repack.h"
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_deflate
+ *
+ * Purpose: make a dataset using DEFLATE (GZIP) compression in FID
+ *
+ * Return: Success: zero
+ * Failure: 1
+ *
+ * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
+ * September, 19, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+make_deflate(hid_t fid)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t dsid; /* dataset ID */
+ hid_t sid; /* dataspace ID */
+ int rank=2;
+ hsize_t dims[2]={4,2};
+ hsize_t chunk_dims[2]={2,1};
+ int buf[4][2]={{1,2},{3,4},{5,6},{7,8}};
+
+ /* create a space */
+ if((sid = H5Screate_simple(rank, dims, NULL))<0)
+ TEST_ERROR;
+
+ /* create the dataset creation property list */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ TEST_ERROR;
+
+ /* set up for deflated data */
+ if(H5Pset_chunk(dcpl, rank, chunk_dims)<0)
+ TEST_ERROR;
+ if(H5Pset_deflate(dcpl, 9)<0)
+ TEST_ERROR;
+
+ /* create the dataset */
+ if((dsid = H5Dcreate (fid, "dset_gzip", H5T_NATIVE_INT, sid, dcpl))<0)
+ TEST_ERROR;
+
+ /* write the data to the dataset */
+ if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)<0)
+ TEST_ERROR;
+
+ /* close */
+ if(H5Dclose(dsid)<0)
+ TEST_ERROR;
+ if(H5Pclose(dcpl)<0)
+ TEST_ERROR;
+ if(H5Sclose(sid)<0)
+ TEST_ERROR;
+
+ return 0;
+
+error:
+ return 1;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: make_szip
+ *
+ * Purpose: make a dataset using SZIP compression in FID
+ *
+ * Return: Success: zero
+ * Failure: 1
+ *
+ * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
+ * September, 19, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+make_szip(hid_t fid)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t dsid; /* dataset ID */
+ hid_t sid; /* dataspace ID */
+ int rank=2;
+ hsize_t dims[2]={4,2};
+ hsize_t chunk_dims[2]={2,1};
+ int buf[4][2]={{1,2},{3,4},{5,6},{7,8}};
+ unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
+ unsigned szip_pixels_per_block;
+
+ /*
+ pixels_per_block must be an even number, and <= pixels_per_scanline
+ and <= MAX_PIXELS_PER_BLOCK
+ */
+ szip_pixels_per_block=16;
+
+ /* create a space */
+ if((sid = H5Screate_simple(rank, dims, NULL))<0)
+ TEST_ERROR;
+
+ /* create the dataset creation property list */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ TEST_ERROR;
+
+ /* set up for sziped data */
+ if(H5Pset_chunk(dcpl, rank, chunk_dims)<0)
+ TEST_ERROR;
+ if(H5Pset_szip (dcpl, szip_options_mask, szip_pixels_per_block)<0)
+ TEST_ERROR;
+
+ /* create the dataset */
+ if((dsid = H5Dcreate (fid, "dset_szip", H5T_NATIVE_INT, sid, dcpl))<0)
+ TEST_ERROR;
+
+ /* write the data to the dataset */
+ if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)<0)
+ TEST_ERROR;
+
+ /* close */
+ if(H5Dclose(dsid)<0)
+ TEST_ERROR;
+ if(H5Pclose(dcpl)<0)
+ TEST_ERROR;
+ if(H5Sclose(sid)<0)
+ TEST_ERROR;
+
+ return 0;
+
+error:
+ return 1;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_testfiles
+ *
+ * Purpose: make a test file with all types of HDF5 objects,
+ * datatypes and filters
+ *
+ * Return: Success: zero
+ * Failure: 1
+ *
+ * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
+ * September, 19, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_testfiles(void)
+{
+ hid_t fid; /* file ID */
+ int nerrors=0;
+
+ TESTING(" generating datasets");
+
+ /* create a file for the copy test */
+ if((fid = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ TEST_ERROR;
+
+ nerrors += make_all_objects(fid);
+
+ /* close */
+ if(H5Fclose(fid)<0)
+ TEST_ERROR;
+
+ /* create a file for the filters test */
+ if((fid = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ TEST_ERROR;
+
+ nerrors += make_deflate(fid);
+ nerrors += make_szip(fid);
+
+ /* close */
+ if(H5Fclose(fid)<0)
+ TEST_ERROR;
+
+ if (nerrors)
+ goto error;
+
+ PASSED();
+ return 0;
+
+error:
+ return 1;
+}
+
+
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_all_objects
+ *
+ * Purpose: make a test file with all types of HDF5 objects, datatypes
+ *
+ * Return: Success: zero
+ * Failure: 1
+ *
+ * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
+ * September, 19, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_all_objects(hid_t fid)
+{
+ hid_t dset_id;
+ hid_t group_id;
+ hid_t type_id;
+ hid_t root_id;
+ hid_t space_id;
+ hsize_t dims[1]={2};
+ /* Compound datatype */
+ typedef struct s_t
+ {
+ int a;
+ float b;
+ } s_t;
+
+/*-------------------------------------------------------------------------
+ * H5G_DATASET
+ *-------------------------------------------------------------------------
+ */
+
+ space_id = H5Screate_simple(1,dims,NULL);
+ dset_id = H5Dcreate(fid,"dset_ref",H5T_NATIVE_INT,space_id,H5P_DEFAULT);
+ H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5G_GROUP
+ *-------------------------------------------------------------------------
+ */
+ group_id = H5Gcreate(fid,"g1",0);
+ root_id = H5Gopen(fid, "/");
+
+/*-------------------------------------------------------------------------
+ * H5G_TYPE
+ *-------------------------------------------------------------------------
+ */
+
+ /* Create a memory compound datatype */
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_INT);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT);
+ /* Commit compound datatype and close it */
+ H5Tcommit(fid, "type", type_id);
+ H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5G_LINK
+ *-------------------------------------------------------------------------
+ */
+
+ H5Glink(fid, H5G_LINK_SOFT, "dset", "link");
+
+/*-------------------------------------------------------------------------
+ * write a series of attributes on the dataset, group, and root group
+ *-------------------------------------------------------------------------
+ */
+
+ write_attr_in(dset_id,"dset_ref",fid,0);
+ write_attr_in(group_id,"dset_ref",fid,0);
+ write_attr_in(root_id,"dset_ref",fid,0);
+
+/*-------------------------------------------------------------------------
+ * write a series of datasetes on the group, and root group
+ *-------------------------------------------------------------------------
+ */
+
+ write_dset_in(root_id,"dset_ref",fid,0);
+ write_dset_in(group_id,"dset_ref",fid,0);
+
+
+ /* Close */
+ H5Dclose(dset_id);
+ H5Gclose(group_id);
+ H5Gclose(root_id);
+
+ return 0;
+
+}
+
diff --git a/tools/h5repack/test_h5repack_main.c b/tools/h5repack/testh5repack_main.c
index 5bfed95..0acd632 100644
--- a/tools/h5repack/test_h5repack_main.c
+++ b/tools/h5repack/testh5repack_main.c
@@ -112,10 +112,6 @@ error:
}
-
-
-
-
/*-------------------------------------------------------------------------
* Function: main
*
generated by cgit v0.12 at 2024-11-11 17:21:29 (GMT)