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-rw-r--r--tools/h5repack/h5repack.c6
-rw-r--r--tools/h5repack/h5repack.h1
-rw-r--r--tools/h5repack/h5repack.sh.in5
-rw-r--r--tools/h5repack/h5repack_copy.c152
-rw-r--r--tools/h5repack/h5repack_main.c34
-rw-r--r--tools/h5repack/h5repacktst.c32
6 files changed, 110 insertions, 120 deletions
diff --git a/tools/h5repack/h5repack.c b/tools/h5repack/h5repack.c
index 28d66c5..9778fdd 100644
--- a/tools/h5repack/h5repack.c
+++ b/tools/h5repack/h5repack.c
@@ -87,10 +87,12 @@ int h5repack(const char* infile,
*/
int
-h5repack_init(pack_opt_t *options, int verbose, H5F_file_space_type_t strategy, hsize_t threshold)
+h5repack_init(pack_opt_t *options, int verbose, H5F_file_space_type_t strategy,
+ hsize_t threshold)
{
int k, n;
- HDmemset(options,0,sizeof(pack_opt_t));
+
+ HDmemset(options, 0, sizeof(pack_opt_t));
options->min_comp = 1024;
options->verbose = verbose;
diff --git a/tools/h5repack/h5repack.h b/tools/h5repack/h5repack.h
index 6415d3a..3907178 100644
--- a/tools/h5repack/h5repack.h
+++ b/tools/h5repack/h5repack.h
@@ -111,6 +111,7 @@ typedef struct {
datatype, fill value, filter pipleline, attribute */
const char *ublock_filename; /* user block file name */
hsize_t ublock_size; /* user block size */
+ hsize_t meta_block_size; /* metadata aggregation block size (for H5Pset_meta_block_size) */
hsize_t threshold; /* alignment threshold for H5Pset_alignment */
hsize_t alignment ; /* alignment for H5Pset_alignment */
H5F_file_space_type_t fs_strategy; /* File space handling strategy */
diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in
index c1cbba1..2271f34 100644
--- a/tools/h5repack/h5repack.sh.in
+++ b/tools/h5repack/h5repack.sh.in
@@ -801,7 +801,6 @@ TOOLTEST h5repack_refs.h5
# the references in attribute of compund or vlen datatype
TOOLTEST h5repack_attr_refs.h5
-
# Add test for memory leak in attirbute. This test is verified by CTEST.
# 1. leak from vlen string
# 2. leak from compound type without reference member
@@ -809,6 +808,10 @@ TOOLTEST h5repack_attr_refs.h5
# Note: this test is experimental for sharing test file among tools
TOOLTEST h5diff_attr1.h5
+# tests for metadata block size option ('-M')
+TOOLTEST h5diff_layout.h5 -M 8192
+TOOLTEST h5diff_layout.h5 --metadata_block_size=8192
+
if test $nerrors -eq 0 ; then
echo "All $TESTNAME tests passed."
exit $EXIT_SUCCESS
diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c
index 55cf932..15df639 100644
--- a/tools/h5repack/h5repack_copy.c
+++ b/tools/h5repack/h5repack_copy.c
@@ -132,23 +132,23 @@ int copy_objects(const char* fnamein,
goto out;
}
- if(!options->fs_strategy)
- {
- if(H5Pget_file_space(fcpl_in, &options->fs_strategy, NULL) < 0)
- {
- error_msg("failed to retrieve file space strategy\n");
- goto out;
- }
- }
-
- if(!options->fs_threshold)
- {
- if(H5Pget_file_space(fcpl_in, NULL, &options->fs_threshold) < 0)
- {
- error_msg("failed to retrieve file space threshold\n");
- goto out;
- }
- }
+ if(!options->fs_strategy)
+ {
+ if(H5Pget_file_space(fcpl_in, &options->fs_strategy, NULL) < 0)
+ {
+ error_msg("failed to retrieve file space strategy\n");
+ goto out;
+ }
+ }
+
+ if(!options->fs_threshold)
+ {
+ if(H5Pget_file_space(fcpl_in, NULL, &options->fs_threshold) < 0)
+ {
+ error_msg("failed to retrieve file space threshold\n");
+ goto out;
+ }
+ }
if(H5Pclose(fcpl_in) < 0)
{
@@ -254,135 +254,113 @@ int copy_objects(const char* fnamein,
} /* end if */
} /* end if */
} /* end if */
-
-
-
-
#if defined (H5REPACK_DEBUG_USER_BLOCK)
- print_user_block(fnamein,fidin);
+ print_user_block(fnamein, fidin);
#endif
-
/*-------------------------------------------------------------------------
* set the new user userblock options in the FCPL (before H5Fcreate )
*-------------------------------------------------------------------------
*/
-
if ( options->ublock_size > 0 )
{
/* either use the FCPL already created or create a new one */
- if(fcpl != H5P_DEFAULT)
+ if(fcpl == H5P_DEFAULT)
{
- /* set user block size */
- if(H5Pset_userblock(fcpl, options->ublock_size) < 0)
- {
- error_msg("failed to set userblock size\n");
- goto out;
- }
-
- }
-
- else
- {
-
/* create a file creation property list */
if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
{
error_msg("fail to create a file creation property list\n");
goto out;
}
-
- /* set user block size */
- if(H5Pset_userblock(fcpl, options->ublock_size) < 0)
- {
- error_msg("failed to set userblock size\n");
- goto out;
- }
-
}
-
-
+ /* set user block size */
+ if(H5Pset_userblock(fcpl, options->ublock_size) < 0)
+ {
+ error_msg("failed to set userblock size\n");
+ goto out;
+ }
}
-
/*-------------------------------------------------------------------------
* set alignment options
*-------------------------------------------------------------------------
*/
-
-
if ( options->alignment > 0 )
{
/* either use the FAPL already created or create a new one */
- if (fapl != H5P_DEFAULT)
+ if (fapl == H5P_DEFAULT)
{
-
- if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0)
+ /* create a file access property list */
+ if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
{
- error_msg("failed to set alignment\n");
+ error_msg("Could not create file access property list\n");
goto out;
}
-
}
- else
+ if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0)
{
+ error_msg("failed to set alignment\n");
+ goto out;
+ }
+ }
+ /*-------------------------------------------------------------------------
+ * set metadata block size option
+ *-------------------------------------------------------------------------
+ */
+ if ( options->meta_block_size > 0 )
+ {
+ /* either use the FAPL already created or create a new one */
+ if (fapl == H5P_DEFAULT)
+ {
/* create a file access property list */
if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
{
error_msg("Could not create file access property list\n");
goto out;
}
-
- if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0)
- {
- error_msg("failed to set alignment\n");
- goto out;
- }
-
}
+ if (H5Pset_meta_block_size(fapl, options->meta_block_size) < 0)
+ {
+ error_msg("failed to set metadata block size\n");
+ goto out;
+ }
}
+ /*-------------------------------------------------------------------------
+ * set free-space strategy options
+ *-------------------------------------------------------------------------
+ */
+
/* either use the FCPL already created or create a new one */
- if(fcpl != H5P_DEFAULT)
+ if(fcpl == H5P_DEFAULT)
{
- /* set file space strategy and free space threshold */
- if(H5Pset_file_space(fcpl, options->fs_strategy, options->fs_threshold) < 0)
- {
- error_msg("failed to set file space strategy & threshold\n");
- goto out;
- }
+ /* create a file creation property list */
+ if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
+ {
+ error_msg("fail to create a file creation property list\n");
+ goto out;
+ }
}
- else
+
+ /* set file space strategy and free space threshold */
+ if(H5Pset_file_space(fcpl, options->fs_strategy, options->fs_threshold) < 0)
{
- /* create a file creation property list */
- if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
- {
- error_msg("fail to create a file creation property list\n");
- goto out;
- }
-
- /* set file space strategy and free space threshold */
- if(H5Pset_file_space(fcpl, options->fs_strategy, options->fs_threshold) < 0)
- {
- error_msg("failed to set file space strategy & threshold \n");
- goto out;
- }
+ error_msg("failed to set file space strategy & threshold \n");
+ goto out;
}
/*-------------------------------------------------------------------------
* create the output file
*-------------------------------------------------------------------------
*/
-
-
if(options->verbose)
printf("Making file <%s>...\n",fnameout);
-
if((fidout = H5Fcreate(fnameout,H5F_ACC_TRUNC, fcpl, fapl)) < 0)
{
error_msg("<%s>: Could not create file\n", fnameout );
diff --git a/tools/h5repack/h5repack_main.c b/tools/h5repack/h5repack_main.c
index e1697ab..6004084 100644
--- a/tools/h5repack/h5repack_main.c
+++ b/tools/h5repack/h5repack_main.c
@@ -35,7 +35,7 @@ const char *outfile = NULL;
* Command-line options: The user can specify short or long-named
* parameters.
*/
-static const char *s_opts = "hVvf:l:m:e:nLc:d:s:u:b:t:a:i:o:S:T:";
+static const char *s_opts = "hVvf:l:m:e:nLc:d:s:u:b:M:t:a:i:o:S:T:";
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "version", no_arg, 'V' },
@@ -51,6 +51,7 @@ static struct long_options l_opts[] = {
{ "ssize", require_arg, 's' },
{ "ublock", require_arg, 'u' },
{ "block", require_arg, 'b' },
+ { "metadata_block_size", require_arg, 'M' },
{ "threshold", require_arg, 't' },
{ "alignment", require_arg, 'a' },
{ "infile", require_arg, 'i' }, /* -i for backward compability */
@@ -78,24 +79,6 @@ static struct long_options l_opts[] = {
*
* Comments:
*
- * Modifications:
- * July 2004: Introduced the extra EC or NN option for SZIP
- * October 2006: Added a new switch -n, that allows to write the dataset
- * using a native type. The default to write is the file type.
- *
- * Modification:
- * Peter Cao, June 13, 2007
- * Add "-L, --latest" option to pack a file with the latest file format
- * PVN, November 19, 2007
- * adopted the syntax h5repack [OPTIONS] file1 file2
- * PVN, November 28, 2007
- * added support for multiple global filters
- * PVN, May 16, 2008
- * added backward compatibility for -i infile -o outfile
- * PVN, August 20, 2008
- * add a user block to repacked file (switches -u -b)
- * PVN, August 28, 2008
- * add options to set alignment (H5Pset_alignment) (switches -t -a)
*-------------------------------------------------------------------------
*/
int main(int argc, const char **argv)
@@ -115,7 +98,7 @@ int main(int argc, const char **argv)
HDexit(EXIT_FAILURE);
/* initialize options */
- h5repack_init(&options, 0, 0, (hsize_t)0);
+ h5repack_init(&options, 0, H5F_FILE_SPACE_DEFAULT, (hsize_t)0);
parse_command_line(argc, argv, &options);
@@ -187,6 +170,7 @@ static void usage(const char *prog)
printf(" -e E, --file=E Name of file E with the -f and -l options\n");
printf(" -u U, --ublock=U Name of file U with user block data to be added\n");
printf(" -b B, --block=B Size of user block to be added\n");
+ printf(" -M A, --metadata_block_size=A Metadata block size for H5Pset_meta_block_size\n");
printf(" -t T, --threshold=T Threshold value for H5Pset_alignment\n");
printf(" -a A, --alignment=A Alignment value for H5Pset_alignment\n");
printf(" -f FILT, --filter=FILT Filter type\n");
@@ -428,7 +412,6 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options)
break;
-
case 'u':
options->ublock_filename = opt_arg;
@@ -439,6 +422,11 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options)
options->ublock_size = (hsize_t)HDatol( opt_arg );
break;
+ case 'M':
+
+ options->meta_block_size = (hsize_t)HDatol( opt_arg );
+ break;
+
case 't':
options->threshold = (hsize_t)HDatol( opt_arg );
@@ -455,7 +443,7 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options)
break;
case 'S':
- {
+ {
char strategy[MAX_NC_NAME];
HDstrcpy(strategy, opt_arg);
@@ -472,7 +460,7 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options)
HDexit(EXIT_FAILURE);
}
break;
- }
+ }
case 'T':
diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c
index 17a6190..5d72ce4 100644
--- a/tools/h5repack/h5repacktst.c
+++ b/tools/h5repack/h5repacktst.c
@@ -78,7 +78,6 @@
#define FNAME17OUT "h5repack_named_dtypes_out.h5"
#define FNAME18 "h5repack_layout2.h5"
-#define FNAME18OUT "h5repack_layout2_out.h5"
#define FNAME_UB "ublock.bin"
@@ -1561,6 +1560,25 @@ int main (void)
PASSED();
/*-------------------------------------------------------------------------
+ * test --metadata_block_size option
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" metadata block size option");
+ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0)
+ GOERROR;
+ pack_options.meta_block_size = 8192;
+ if(h5repack(FNAME1, FNAME1OUT, &pack_options) < 0)
+ GOERROR;
+ if(h5diff(FNAME1, FNAME1OUT, NULL, NULL, &diff_options) > 0)
+ GOERROR;
+ if(h5repack_verify(FNAME1, FNAME1OUT, &pack_options) <= 0)
+ GOERROR;
+ if(h5repack_end(&pack_options) < 0)
+ GOERROR;
+ PASSED();
+
+
+ /*-------------------------------------------------------------------------
* clean temporary test files
*-------------------------------------------------------------------------
*/
@@ -3253,7 +3271,7 @@ make_userblock(void)
/* Initialize userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
- ub[u] = 'a' + (u % 26);
+ ub[u] = 'a' + (char)(u % 26);
/* Re-open HDF5 file, as "plain" file */
if((fd = HDopen(FNAME16, O_WRONLY, 0644)) < 0)
@@ -3366,7 +3384,7 @@ make_userblock_file(void)
/* initialize userblock data */
for(u = 0; u < USERBLOCK_SIZE; u++)
- ub[u] = 'a' + (u % 26);
+ ub[u] = 'a' + (char)(u % 26);
/* open file */
if((fd = HDopen(FNAME_UB,O_WRONLY|O_CREAT|O_TRUNC, 0644 )) < 0)
@@ -3842,7 +3860,7 @@ int write_dset_in(hid_t loc_id,
int l;
buf52[i][j].p = malloc((i + 1) * sizeof(int));
- buf52[i][j].len = i + 1;
+ buf52[i][j].len = (size_t)(i + 1);
for(l = 0; l < i + 1; l++)
{
if(make_diffs)
@@ -4063,7 +4081,7 @@ int write_dset_in(hid_t loc_id,
int l;
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
- buf53[i][j][k].len = i + 1;
+ buf53[i][j][k].len = (size_t)(i + 1);
for(l = 0; l < i + 1; l++)
{
if(make_diffs)
@@ -4854,7 +4872,7 @@ int write_attr_in(hid_t loc_id,
{
int l;
buf52[i][j].p = malloc((i + 1) * sizeof(int));
- buf52[i][j].len = i + 1;
+ buf52[i][j].len = (size_t)(i + 1);
for (l = 0; l < i + 1; l++)
if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
else ((int *)buf52[i][j].p)[l] = n++;
@@ -5320,7 +5338,7 @@ int write_attr_in(hid_t loc_id,
{
int l;
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
- buf53[i][j][k].len = i + 1;
+ buf53[i][j][k].len = (size_t)i + 1;
for (l = 0; l < i + 1; l++)
if (make_diffs)
{