diff options
Diffstat (limited to 'tools/h5stat')
| -rw-r--r-- | tools/h5stat/Makefile.am | 52 | ||||
| -rw-r--r-- | tools/h5stat/Makefile.in | 891 | ||||
| -rw-r--r-- | tools/h5stat/h5stat.c | 1377 | ||||
| -rw-r--r-- | tools/h5stat/h5stat_gentest.c | 84 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_filters-F.ddl | 21 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_filters-d.ddl | 33 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_filters-dT.ddl | 42 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_filters-file.ddl | 13 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_filters-g.ddl | 9 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_filters.ddl | 78 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_filters.h5 | bin | 0 -> 46272 bytes | |||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_help1.ddl | 24 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_help2.ddl | 24 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_newgrat.ddl | 74 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_newgrat.h5 | bin | 0 -> 72236 bytes | |||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_tsohm.ddl | 72 | ||||
| -rw-r--r-- | tools/h5stat/testfiles/h5stat_tsohm.h5 | bin | 0 -> 3603 bytes | |||
| -rw-r--r-- | tools/h5stat/testh5stat.sh.in | 135 |
18 files changed, 2929 insertions, 0 deletions
diff --git a/tools/h5stat/Makefile.am b/tools/h5stat/Makefile.am new file mode 100644 index 0000000..b1c2024 --- /dev/null +++ b/tools/h5stat/Makefile.am @@ -0,0 +1,52 @@ +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +# +# HDF5 Library Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# Include src directory +INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib + +#test script and program +TEST_PROG=h5stat_gentest +TEST_SCRIPT=testh5stat.sh + +check_PROGRAMS=$(TEST_PROG) +check_SCRIPTS=$(TEST_SCRIPT) +SCRIPT_DEPEND=h5stat$(EXEEXT) + +# These are our main targets, the tools +bin_PROGRAMS=h5stat +bin_SCRIPTS= + +# Tell automake to clean h5redeploy script +CLEANFILES= + +# Temporary files. *.h5 are generated by h5repart_gentest. They should +# copied to the testfiles/ directory if update is required. fst_family*.h5 +# and scd_family*.h5 were created by setting the HDF5_NOCLEANUP variable. +CHECK_CLEANFILES+=*.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 + +# These were generated by configure. Remove them only when distclean. +DISTCLEANFILES=testh5stat.sh + +# All programs rely on hdf5 library and h5tools library +LDADD=$(LIBH5TOOLS) $(LIBHDF5) + +include $(top_srcdir)/config/conclude.am diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in new file mode 100644 index 0000000..33a3060 --- /dev/null +++ b/tools/h5stat/Makefile.in @@ -0,0 +1,891 @@ +# Makefile.in generated by automake 1.10 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, +# 2003, 2004, 2005, 2006 Free Software Foundation, Inc. +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +# +# HDF5 Library Makefile(.in) +# + + +VPATH = @srcdir@ +pkgdatadir = $(datadir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkgincludedir = $(includedir)/@PACKAGE@ +am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd +install_sh_DATA = $(install_sh) -c -m 644 +install_sh_PROGRAM = $(install_sh) -c +install_sh_SCRIPT = $(install_sh) -c +INSTALL_HEADER = $(INSTALL_DATA) +transform = $(program_transform_name) +NORMAL_INSTALL = : +PRE_INSTALL = : +POST_INSTALL = : +NORMAL_UNINSTALL = : +PRE_UNINSTALL = : +POST_UNINSTALL = : +build_triplet = @build@ +host_triplet = @host@ +DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/testh5stat.sh.in $(top_srcdir)/config/commence.am \ + $(top_srcdir)/config/conclude.am +check_PROGRAMS = $(am__EXEEXT_1) +bin_PROGRAMS = h5stat$(EXEEXT) +TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +subdir = tools/h5stat +ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 +am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) +mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs +CONFIG_HEADER = $(top_builddir)/src/H5config.h +CONFIG_CLEAN_FILES = testh5stat.sh +am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)" +binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) +am__EXEEXT_1 = h5stat_gentest$(EXEEXT) +PROGRAMS = $(bin_PROGRAMS) +h5stat_SOURCES = h5stat.c +h5stat_OBJECTS = h5stat.$(OBJEXT) +h5stat_LDADD = $(LDADD) +h5stat_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5stat_gentest_SOURCES = h5stat_gentest.c +h5stat_gentest_OBJECTS = h5stat_gentest.$(OBJEXT) +h5stat_gentest_LDADD = $(LDADD) +h5stat_gentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +binSCRIPT_INSTALL = $(INSTALL_SCRIPT) +SCRIPTS = $(bin_SCRIPTS) +DEFAULT_INCLUDES = -I. -I$(top_builddir)/src@am__isrc@ +depcomp = $(SHELL) $(top_srcdir)/bin/depcomp +am__depfiles_maybe = depfiles +COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \ + $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +CCLD = $(CC) +LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \ + $(LDFLAGS) -o $@ +SOURCES = h5stat.c h5stat_gentest.c +DIST_SOURCES = h5stat.c h5stat_gentest.c +ETAGS = etags +CTAGS = ctags +DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) +ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ +AMTAR = @AMTAR@ +AM_MAKEFLAGS = @AM_MAKEFLAGS@ +AR = @AR@ + +# Set the paths for AFS installs of autotools for Linux machines +# Ideally, these tools should never be needed during the build. +AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf +AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader +AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AWK = @AWK@ +BYTESEX = @BYTESEX@ +CC = @CC@ +CCDEPMODE = @CCDEPMODE@ +CC_VERSION = @CC_VERSION@ + +# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5, +# but which shouldn't be exported to h5cc for building other programs. +CFLAGS = @CFLAGS@ @H5_CFLAGS@ +CLEARFILEBUF = @CLEARFILEBUF@ +CONFIG_DATE = @CONFIG_DATE@ +CONFIG_MODE = @CONFIG_MODE@ +CONFIG_USER = @CONFIG_USER@ +CPP = @CPP@ +CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@ +CXX = @CXX@ +CXXCPP = @CXXCPP@ +CXXDEPMODE = @CXXDEPMODE@ +CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@ +CYGPATH_W = @CYGPATH_W@ +DEBUG_PKG = @DEBUG_PKG@ +DEFAULT_API_VERSION = @DEFAULT_API_VERSION@ +DEFS = @DEFS@ +DEPDIR = @DEPDIR@ +DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@ +DYNAMIC_DIRS = @DYNAMIC_DIRS@ +ECHO = @ECHO@ +ECHO_C = @ECHO_C@ +ECHO_N = @ECHO_N@ +ECHO_T = @ECHO_T@ +EGREP = @EGREP@ +EXEEXT = @EXEEXT@ +F77 = @F77@ + +# Make sure that these variables are exported to the Makefiles +F9XMODEXT = @F9XMODEXT@ +F9XMODFLAG = @F9XMODFLAG@ +F9XSUFFIXFLAG = @F9XSUFFIXFLAG@ +FC = @FC@ +FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@ +FCFLAGS_f90 = @FCFLAGS_f90@ +FCLIBS = @FCLIBS@ +FFLAGS = @FFLAGS@ +FILTERS = @FILTERS@ +FSEARCH_DIRS = @FSEARCH_DIRS@ +GREP = @GREP@ +H5_CFLAGS = @H5_CFLAGS@ +H5_CPPFLAGS = @H5_CPPFLAGS@ +H5_CXXFLAGS = @H5_CXXFLAGS@ +H5_FCFLAGS = @H5_FCFLAGS@ +H5_LONE_COLON = @H5_LONE_COLON@ +H5_VERSION = @H5_VERSION@ +HADDR_T = @HADDR_T@ +HDF5_INTERFACES = @HDF5_INTERFACES@ +HID_T = @HID_T@ +HL = @HL@ +HL_FOR = @HL_FOR@ +HSIZET = @HSIZET@ +HSIZE_T = @HSIZE_T@ +HSSIZE_T = @HSSIZE_T@ +INSTALL = @INSTALL@ +INSTALL_DATA = @INSTALL_DATA@ +INSTALL_PROGRAM = @INSTALL_PROGRAM@ +INSTALL_SCRIPT = @INSTALL_SCRIPT@ +INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ +INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ +LDFLAGS = @LDFLAGS@ +LIBOBJS = @LIBOBJS@ +LIBS = @LIBS@ +LIBTOOL = @LIBTOOL@ +LN_S = @LN_S@ +LTLIBOBJS = @LTLIBOBJS@ +LT_STATIC_EXEC = @LT_STATIC_EXEC@ +MAINT = @MAINT@ +MAKEINFO = @MAKEINFO@ +MKDIR_P = @MKDIR_P@ +MPE = @MPE@ +MPI_GET_SIZE = @MPI_GET_SIZE@ +OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@ +OBJEXT = @OBJEXT@ +PACKAGE = @PACKAGE@ +PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ +PACKAGE_NAME = @PACKAGE_NAME@ +PACKAGE_STRING = @PACKAGE_STRING@ +PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_VERSION = @PACKAGE_VERSION@ +PARALLEL = @PARALLEL@ +PATH_SEPARATOR = @PATH_SEPARATOR@ +PERL = @PERL@ +PTHREAD = @PTHREAD@ +RANLIB = @RANLIB@ +ROOT = @ROOT@ +RUNPARALLEL = @RUNPARALLEL@ +RUNSERIAL = @RUNSERIAL@ +R_INTEGER = @R_INTEGER@ +R_LARGE = @R_LARGE@ +SEARCH = @SEARCH@ +SETX = @SETX@ +SET_MAKE = @SET_MAKE@ + +# Hardcode SHELL to be /bin/sh. Most machines have this shell, and +# on at least one machine configure fails to detect its existence (janus). +# Also, when HDF5 is configured on one machine but run on another, +# configure's automatic SHELL detection may not work on the build machine. +SHELL = /bin/sh +SIZE_T = @SIZE_T@ +STATIC_SHARED = @STATIC_SHARED@ +STRIP = @STRIP@ +TESTPARALLEL = @TESTPARALLEL@ +TIME = @TIME@ +TR = @TR@ +TRACE_API = @TRACE_API@ +USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ +USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@ +USE_FILTER_NBIT = @USE_FILTER_NBIT@ +USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@ +USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@ +USE_FILTER_SZIP = @USE_FILTER_SZIP@ +USINGMEMCHECKER = @USINGMEMCHECKER@ +VERSION = @VERSION@ +abs_builddir = @abs_builddir@ +abs_srcdir = @abs_srcdir@ +abs_top_builddir = @abs_top_builddir@ +abs_top_srcdir = @abs_top_srcdir@ +ac_ct_CC = @ac_ct_CC@ +ac_ct_CXX = @ac_ct_CXX@ +ac_ct_F77 = @ac_ct_F77@ +ac_ct_FC = @ac_ct_FC@ +am__include = @am__include@ +am__leading_dot = @am__leading_dot@ +am__quote = @am__quote@ +am__tar = @am__tar@ +am__untar = @am__untar@ +bindir = @bindir@ +build = @build@ +build_alias = @build_alias@ +build_cpu = @build_cpu@ +build_os = @build_os@ +build_vendor = @build_vendor@ +builddir = @builddir@ +datadir = @datadir@ +datarootdir = @datarootdir@ +docdir = $(exec_prefix)/doc +dvidir = @dvidir@ +exec_prefix = @exec_prefix@ +host = @host@ +host_alias = @host_alias@ +host_cpu = @host_cpu@ +host_os = @host_os@ +host_vendor = @host_vendor@ +htmldir = @htmldir@ + +# Install directories that automake doesn't know about +includedir = $(exec_prefix)/include +infodir = @infodir@ +install_sh = @install_sh@ +libdir = @libdir@ +libexecdir = @libexecdir@ +localedir = @localedir@ +localstatedir = @localstatedir@ +mandir = @mandir@ +mkdir_p = @mkdir_p@ +oldincludedir = @oldincludedir@ +pdfdir = @pdfdir@ +prefix = @prefix@ +program_transform_name = @program_transform_name@ +psdir = @psdir@ +sbindir = @sbindir@ +sharedstatedir = @sharedstatedir@ +srcdir = @srcdir@ +sysconfdir = @sysconfdir@ +target_alias = @target_alias@ +top_builddir = @top_builddir@ +top_srcdir = @top_srcdir@ + +# Shell commands used in Makefiles +RM = rm -f +CP = cp + +# Some machines need a command to run executables; this is that command +# so that our tests will run. +# We use RUNTESTS instead of RUNSERIAL directly because it may be that +# some tests need to be run with a different command. Older versions +# of the makefiles used the command +# $(LIBTOOL) --mode=execute +# in some directories, for instance. +RUNTESTS = $(RUNSERIAL) + +# Libraries to link to while building +LIBHDF5 = $(top_builddir)/src/libhdf5.la +LIBH5TEST = $(top_builddir)/test/libh5test.la +LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la +LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la +LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la +LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la +LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la +LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la +LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la + +# Scripts used to build examples +# If only shared libraries have been installed, have h5cc build examples with +# shared libraries instead of static libraries +H5CC = $(bindir)/h5cc +H5CC_PP = $(bindir)/h5pcc +H5FC = $(bindir)/h5fc +H5FC_PP = $(bindir)/h5pfc +H5CPP = $(bindir)/h5c++ + +# The trace script; this is used on source files from the C library to +# insert tracing macros. +TRACE = perl $(top_srcdir)/bin/trace + +# .chkexe files are used to mark tests that have run successfully. +# .chklog files are output from those tests. +# *.clog are from the MPE option. + +# Temporary files. *.h5 are generated by h5repart_gentest. They should +# copied to the testfiles/ directory if update is required. fst_family*.h5 +# and scd_family*.h5 were created by setting the HDF5_NOCLEANUP variable. +CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 \ + ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 + +# Include src directory +INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib + +#test script and program +TEST_PROG = h5stat_gentest +TEST_SCRIPT = testh5stat.sh +check_SCRIPTS = $(TEST_SCRIPT) +SCRIPT_DEPEND = h5stat$(EXEEXT) +bin_SCRIPTS = + +# Tell automake to clean h5redeploy script +CLEANFILES = + +# These were generated by configure. Remove them only when distclean. +DISTCLEANFILES = testh5stat.sh + +# All programs rely on hdf5 library and h5tools library +LDADD = $(LIBH5TOOLS) $(LIBHDF5) + +# Automake needs to be taught how to build lib, progs, and tests targets. +# These will be filled in automatically for the most part (e.g., +# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and +# EXTRA_TEST variables are supplied to allow the user to force targets to +# be built at certain times. +LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ + $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) + +PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ + $(EXTRA_PROG) + +TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) +TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) +TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) +TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_) +all: all-am + +.SUFFIXES: +.SUFFIXES: .c .lo .o .obj +$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps) + @for dep in $?; do \ + case '$(am__configure_deps)' in \ + *$$dep*) \ + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \ + && exit 0; \ + exit 1;; \ + esac; \ + done; \ + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5stat/Makefile'; \ + cd $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5stat/Makefile +.PRECIOUS: Makefile +Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ + *config.status*) \ + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ + *) \ + echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ + esac; + +$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh + +$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +testh5stat.sh: $(top_builddir)/config.status $(srcdir)/testh5stat.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +install-binPROGRAMS: $(bin_PROGRAMS) + @$(NORMAL_INSTALL) + test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" + @list='$(bin_PROGRAMS)'; 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The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include <stdlib.h> +#include <string.h> +#include "H5private.h" /* Generic Functions */ +#include "h5tools.h" +#include "h5tools_utils.h" +#include "h5tools_ref.h" +#include "h5trav.h" +#include "hdf5.h" + +/* Parameters to control statistics gathered */ +#define SIZE_SMALL_GROUPS 10 +#define SIZE_SMALL_ATTRS 10 +#define SIZE_SMALL_DSETS 10 + +#define H5_NFILTERS_IMPL 8 /* Number of currently implemented filters + one to + accommodate for user-define filters + one + to accomodate datasets whithout any filters */ + + + +/* Datatype statistics for datasets */ +typedef struct dtype_info_t { + hid_t tid; /* ID of datatype */ + unsigned long count; /* Number of types found */ + unsigned long named; /* Number of types that are named */ +} dtype_info_t; + +typedef struct ohdr_info_t { + hsize_t total_size; /* Total size of object headers */ + hsize_t free_size; /* Total free space in object headers */ +} ohdr_info_t; + +/* Info to pass to the iteration functions */ +typedef struct iter_t { + const char *container; /* Full name of the container object */ + unsigned long curr_depth; /* Current depth of hierarchy */ + + unsigned long uniq_groups; /* Number of unique groups */ + unsigned long uniq_dsets; /* Number of unique datasets */ + unsigned long uniq_types; /* Number of unique named datatypes */ + unsigned long uniq_links; /* Number of unique links */ + unsigned long uniq_others; /* Number of other unique objects */ + + unsigned long max_depth; /* Maximum depth of hierarchy */ + unsigned long max_links; /* Maximum # of links to an object */ + hsize_t max_fanout; /* Maximum fanout from a group */ + unsigned long num_small_groups[SIZE_SMALL_GROUPS]; /* Size of small groups tracked */ + unsigned group_nbins; /* Number of bins for group counts */ + unsigned long *group_bins; /* Pointer to array of bins for group counts */ + ohdr_info_t group_ohdr_info; /* Object header information for groups */ + + hsize_t max_attrs; /* Maximum attributes from a group */ + unsigned long num_small_attrs[SIZE_SMALL_ATTRS]; /* Size of small attributes tracked */ + unsigned attr_nbins; + unsigned long *attr_bins; + + unsigned long max_dset_rank; /* Maximum rank of dataset */ + unsigned long dset_rank_count[H5S_MAX_RANK]; /* Number of datasets of each rank */ + hsize_t max_dset_dims; /* Maximum dimension size of dataset */ + unsigned long small_dset_dims[SIZE_SMALL_DSETS]; /* Size of dimensions of small datasets tracked */ + unsigned long dset_layouts[H5D_NLAYOUTS]; /* Type of storage for each dataset */ + unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */ + unsigned long dset_ntypes; /* Number of diff. dataset datatypes found */ + dtype_info_t *dset_type_info; /* Pointer to dataset datatype information found */ + unsigned dset_dim_nbins; /* Number of bins for dataset dimensions */ + unsigned long *dset_dim_bins; /* Pointer to array of bins for dataset dimensions */ + ohdr_info_t dset_ohdr_info; /* Object header information for datasets */ + hsize_t dset_storage_size; /* Size of raw data for datasets */ + hsize_t groups_btree_storage_size; /* btree size for group */ + hsize_t groups_heap_storage_size; /* heap size for group */ + hsize_t attrs_btree_storage_size; /* btree size for attributes (1.8) */ + hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */ + hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */ + hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */ + hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */ + hsize_t super_ext_size; /* superblock extension size */ + hsize_t datasets_btree_storage_size; /* btree size for chunked dataset */ + unsigned long nexternal; /* Number of external files for a dataset */ + int local; /* Flag to indicate iteration over the object*/ +} iter_t; + + +/* Table containing object id and object name */ +static struct { + int nalloc; /* number of slots allocated */ + int nobjs; /* number of objects */ + struct { + haddr_t id; /* object number */ + char *name; /* full object name */ + } *obj; +} idtab_g; + +const char *progname = "h5stat"; +int d_status = EXIT_SUCCESS; +static int display_all = TRUE; +static int display_file_metadata = FALSE; +static int display_file = FALSE; +static int display_group_metadata = FALSE; +static int display_group = FALSE; +static int display_dset_metadata = FALSE; +static int display_dset = FALSE; +static int display_dtype_metadata = FALSE; +/* Not used yet 11/17/06 EIP +static int display_dtype = FALSE; +*/ +static int display_object = FALSE; +static int display_attr = FALSE; + +/* a structure for handling the order command-line parameters come in */ +struct handler_t { + void (*func)(void *); + int flag; + char *obj; +}; + + +static const char *s_opts ="AFfhGgDdTO:V"; +static struct long_options l_opts[] = { + {"help", no_arg, 'h'}, + {"hel", no_arg, 'h'}, + {"file", no_arg, 'f'}, + {"fil", no_arg, 'f'}, + {"fi", no_arg, 'f'}, + {"FILEmetadata", no_arg, 'F'}, + {"FILEmetadat", no_arg, 'F'}, + {"FILEmetada", no_arg, 'F'}, + {"FILEmetad", no_arg, 'F'}, + {"FILEmeta", no_arg, 'F'}, + {"FILEmet", no_arg, 'F'}, + {"FILEme", no_arg, 'F'}, + {"FILEm", no_arg, 'F'}, + {"group", no_arg, 'g'}, + {"grou", no_arg, 'g'}, + {"gro", no_arg, 'g'}, + {"gr", no_arg, 'g'}, + {"groupmetadata", no_arg, 'G'}, + {"groupmetadat", no_arg, 'G'}, + {"groupmetada", no_arg, 'G'}, + {"groupmetad", no_arg, 'G'}, + {"groupmeta", no_arg, 'G'}, + {"groupmet", no_arg, 'G'}, + {"groupme", no_arg, 'G'}, + {"groupm", no_arg, 'G'}, + {"dset", no_arg, 'd'}, + {"dse", no_arg, 'd'}, + {"ds", no_arg, 'd'}, + {"d", no_arg, 'd'}, + {"dsetmetadata", no_arg, 'D'}, + {"dsetmetadat", no_arg, 'D'}, + {"dsetmetada", no_arg, 'D'}, + {"dsetmetad", no_arg, 'D'}, + {"dsetmeta", no_arg, 'D'}, + {"dsetmet", no_arg, 'D'}, + {"dsetme", no_arg, 'D'}, + {"dsetm", no_arg, 'D'}, + {"dtypemetadata", no_arg, 'T'}, + {"dtypemetadat", no_arg, 'T'}, + {"dtypemetada", no_arg, 'T'}, + {"dtypemetad", no_arg, 'T'}, + {"dtypemeta", no_arg, 'T'}, + {"dtypemet", no_arg, 'T'}, + {"dtypeme", no_arg, 'T'}, + {"dtypem", no_arg, 'T'}, + {"dtype", no_arg, 'T'}, + { "object", require_arg, 'O' }, + { "objec", require_arg, 'O' }, + { "obje", require_arg, 'O' }, + { "obj", require_arg, 'O' }, + { "ob", require_arg, 'O' }, + { "version", no_arg, 'V' }, + { "versio", no_arg, 'V' }, + { "versi", no_arg, 'V' }, + { "vers", no_arg, 'V' }, + { "ver", no_arg, 'V' }, + { "ve", no_arg, 'V' }, + { "attribute", no_arg, 'A' }, + { "attribut", no_arg, 'A' }, + { "attribu", no_arg, 'A' }, + { "attrib", no_arg, 'A' }, + { "attri", no_arg, 'A' }, + { "attr", no_arg, 'A' }, + { "att", no_arg, 'A' }, + { "at", no_arg, 'A' }, + { "a", no_arg, 'A' }, + { NULL, 0, '\0' } +}; + +static void +leave(int ret) +{ + h5tools_close(); + exit(ret); +} + + +static void usage(const char *prog) +{ + fflush(stdout); + fprintf(stdout, "\n"); + fprintf(stdout, "This tool is under development. For detailed information\n"); + fprintf(stdout, "please see the specification document at\n"); + fprintf(stdout, "http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf\n"); + fprintf(stdout, "\n"); + fprintf(stdout, "Please send your comments and questions to help@hdfgroup.org\n"); + fprintf(stdout, "\n"); + fprintf(stdout, "Usage: %s [OPTIONS] file\n", prog); + fprintf(stdout, "\n"); + fprintf(stdout, " OPTIONS\n"); + fprintf(stdout, " -h, --help Print a usage message and exit\n"); + fprintf(stdout, " -V, --version Print version number and exit\n"); + fprintf(stdout, " -f, --file Print file information\n"); + fprintf(stdout, " -F, --filemetadata Print file metadata\n"); + fprintf(stdout, " -g, --group Print group information\n"); + fprintf(stdout, " -G, --groupmetadata Print group metadata\n"); + fprintf(stdout, " -d, --dset Print dataset information\n"); + fprintf(stdout, " -D, --dsetmetadata Print dataset metadata\n"); + fprintf(stdout, " -T, --dtypemetadata Print datatype metadata\n"); + fprintf(stdout, " -A, --attribute Print attribute information\n"); + fprintf(stdout, "\n"); +} + + +/*------------------------------------------------------------------------- + * Function: ceil_log10 + * + * Purpose: Compute the ceiling of log_10(x) + * + * Return: >0 on success, 0 on failure + * + * Programmer: Quincey Koziol + * Monday, August 22, 2005 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static unsigned +ceil_log10(unsigned long x) +{ + unsigned long pow10 = 1; + unsigned ret = 0; + + while(x >= pow10) { + pow10 *= 10; + ret++; + } /* end while */ + + return(ret); +} + + +/*------------------------------------------------------------------------- + * Function: sym_insert + * + * Purpose: Add a symbol to the table. + * + * Return: void + * + * Programmer: Robb Matzke + * Thursday, January 21, 1999 + * + *------------------------------------------------------------------------- + */ +static void +sym_insert(H5O_info_t *oi, const char *name) +{ + /* Don't add it if the link count is 1 because such an object can only + * have one name. */ + if(oi->rc > 1) { + int n; + + /* Extend the table */ + if(idtab_g.nobjs >= idtab_g.nalloc) { + idtab_g.nalloc = MAX(256, 2 * idtab_g.nalloc); + idtab_g.obj = realloc(idtab_g.obj, idtab_g.nalloc * sizeof(idtab_g.obj[0])); + } /* end if */ + + /* Insert the entry */ + n = idtab_g.nobjs++; + idtab_g.obj[n].id = oi->addr; + idtab_g.obj[n].name = strdup(name); + } /* end if */ +} /* end sym_insert() */ + + +/*------------------------------------------------------------------------- + * Function: sym_lookup + * + * Purpose: Find another name for the specified object. + * + * Return: Success: Ptr to another name. + * + * Failure: NULL + * + * Programmer: Robb Matzke + * Thursday, January 21, 1999 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static char * +sym_lookup(H5O_info_t *oi) +{ + int n; + + /*only one name possible*/ + if(oi->rc < 2) + return NULL; + + for(n = 0; n < idtab_g.nobjs; n++) + if(idtab_g.obj[n].id == oi->addr) + return idtab_g.obj[n].name; + + return NULL; +} /* end sym_lookup() */ + + +/*------------------------------------------------------------------------- + * Function: fix_name + * + * Purpose: Returns a malloc'd buffer that contains the PATH and BASE + * names separated by a single slash. It also removes duplicate + * and trailing slashes. + * + * Return: Success: Ptr to fixed name from malloc() + * + * Failure: NULL + * + * Programmer: Robb Matzke + * Thursday, January 21, 1999 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static char * +fix_name(const char *path, const char *base) +{ + size_t n = (path ? strlen(path) : 0) + (base ? strlen(base) : 0) + 3; + char *s = malloc(n), prev='\0'; + size_t len = 0; + + if (path) { + /* Path, followed by slash */ + for (/*void*/; *path; path++) + if ('/'!=*path || '/'!=prev) + prev = s[len++] = *path; + if ('/' != prev) + prev = s[len++] = '/'; + } + + if (base) { + /* Base name w/o trailing slashes */ + const char *end = base + strlen(base); + while (end > base && '/' == end[-1]) + --end; + + for (/*void*/; base < end; base++) + if ('/' != *base || '/' != prev) + prev = s[len++] = *base; + } + + s[len] = '\0'; + return s; +} + + +/*------------------------------------------------------------------------- + * Function: attribute_stats + * + * Purpose: Gather statistics about attributes on an object + * + * Return: Success: 0 + * + * Failure: -1 + * + * Programmer: Quincey Koziol + * Tuesday, July 17, 2007 + * + *------------------------------------------------------------------------- + */ +static herr_t +attribute_stats(iter_t *iter, const H5O_info_t *oi) +{ + unsigned bin; /* "bin" the number of objects falls in */ + + /* Update dataset & attribute metadata info */ + iter->attrs_btree_storage_size += oi->meta_size.attr.index_size; + iter->attrs_heap_storage_size += oi->meta_size.attr.heap_size; + + /* Update small # of attribute count & limits */ + if(oi->num_attrs < SIZE_SMALL_ATTRS) + (iter->num_small_attrs[(size_t)oi->num_attrs])++; + if(oi->num_attrs > iter->max_attrs) + iter->max_attrs = oi->num_attrs; + + /* Add attribute count to proper bin */ + bin = ceil_log10((unsigned long)oi->num_attrs); + if((bin + 1) > iter->attr_nbins) { + iter->attr_bins = realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long)); + assert(iter->attr_bins); + + /* Initialize counts for intermediate bins */ + while(iter->attr_nbins < bin) + iter->attr_bins[iter->attr_nbins++] = 0; + iter->attr_nbins++; + + /* Initialize count for new bin */ + iter->attr_bins[bin] = 1; + } /* end if */ + else + (iter->attr_bins[bin])++; + + return 0; +} /* end attribute_stats() */ + + +/*------------------------------------------------------------------------- + * Function: group_stats + * + * Purpose: Gather statistics about the group + * + * Return: Success: 0 + * + * Failure: -1 + * + * Programmer: Quincey Koziol + * Tuesday, August 16, 2005 + * + * Modifications: Refactored code from the walk_function + * EIP, Wednesday, August 16, 2006 + * + * Vailin Choi 12 July 2007 + * 1. Gathered storage info for btree and heap + * (groups and attributes) + * 2. Gathered info for attributes + * + * Vailin Choi 14 July 2007 + * Cast "num_objs" and "num_attrs" to size_t + * Due to the -Mbounds problem for the pgi-32 bit compiler on indexing + * + *------------------------------------------------------------------------- + */ +static herr_t +group_stats(hid_t group, const char *name, const char *fullname, + const H5O_info_t *oi, H5G_iterate_t walk, iter_t *iter) +{ + hid_t gid; /* Group ID */ + const char *last_container; + hsize_t num_objs; + unsigned bin; /* "bin" the number of objects falls in */ + herr_t ret; + + /* Gather statistics about this type of object */ + iter->uniq_groups++; + if(iter->curr_depth > iter->max_depth) + iter->max_depth = iter->curr_depth; + + /* Get object header information */ + iter->group_ohdr_info.total_size += oi->hdr.space.total; + iter->group_ohdr_info.free_size += oi->hdr.space.free; + + gid = H5Gopen(group, name); + assert(gid > 0); + + /* Get number of links in this group */ + ret = H5Gget_num_objs(gid, &num_objs); + assert(ret >= 0); + + /* Update link stats */ + if(num_objs < SIZE_SMALL_GROUPS) + (iter->num_small_groups[(size_t)num_objs])++; + if(num_objs > iter->max_fanout) + iter->max_fanout = num_objs; + + /* Add group count to proper bin */ + bin = ceil_log10((unsigned long)num_objs); + if((bin + 1) > iter->group_nbins) { + /* Allocate more storage for info about dataset's datatype */ + iter->group_bins = realloc(iter->group_bins, (bin + 1) * sizeof(unsigned long)); + assert(iter->group_bins); + + /* Initialize counts for intermediate bins */ + while(iter->group_nbins < bin) + iter->group_bins[iter->group_nbins++] = 0; + iter->group_nbins++; + + /* Initialize count for new bin */ + iter->group_bins[bin] = 1; + } /* end if */ + else + (iter->group_bins[bin])++; + + /* Update group metadata info */ + iter->groups_btree_storage_size += oi->meta_size.obj.index_size; + iter->groups_heap_storage_size += oi->meta_size.obj.heap_size; + + /* Update attribute metadata info */ + ret = attribute_stats(iter, oi); + assert(ret >= 0); + + /* Close current group */ + ret = H5Gclose(gid); + assert(ret >= 0); + + /* Update current container info */ + last_container = iter->container; + iter->container = fullname; + iter->curr_depth++; + + /* Recursively descend into current group's objects */ + H5Giterate(group, name, NULL, walk, iter); + + /* Revert current container info */ + iter->container = last_container; + iter->curr_depth--; + + return 0; +} /* end group_stats() */ + + +/*------------------------------------------------------------------------- + * Function: dataset_stats + * + * Purpose: Gather statistics about the dataset + * + * Return: Success: 0 + * + * Failure: -1 + * + * Programmer: Quincey Koziol + * Tuesday, August 16, 2005 + * + * Modifications: Refactored code from the walk_function + * EIP, Wednesday, August 16, 2006 + * + * Vailin Choi 12 July 2007 + * 1. Gathered storage info for btree and heap + * (chunked datasets and attributes) + * 2. Gathered info for attributes + * + * Vailin Choi 14 July 2007 + * Cast "dims" and "num_attrs" to size_t + * Due to the -Mbounds problem for the pgi-32bit compiler on indexing + * + *------------------------------------------------------------------------- + */ +static herr_t +dataset_stats(hid_t group, const char *name, const H5O_info_t *oi, iter_t *iter) +{ + unsigned bin; /* "bin" the number of objects falls in */ + hid_t did; /* Dataset ID */ + hid_t sid; /* Dataspace ID */ + hid_t tid; /* Datatype ID */ + hid_t dcpl; /* Dataset creation property list ID */ + hsize_t dims[H5S_MAX_RANK];/* Dimensions of dataset */ + H5D_layout_t lout; /* Layout of dataset */ + unsigned type_found; /* Whether the dataset's datatype was */ + /* already found */ + int ndims; /* Number of dimensions of dataset */ + hsize_t storage; /* Size of dataset storage */ + unsigned u; /* Local index variable */ + int num_ext; /* Number of external files for a dataset */ + int nfltr; /* Number of filters for a dataset */ + H5Z_filter_t fltr; /* Filter identifier */ + herr_t ret; + + /* Gather statistics about this type of object */ + iter->uniq_dsets++; + + /* Get object header information */ + iter->dset_ohdr_info.total_size += oi->hdr.space.total; + iter->dset_ohdr_info.free_size += oi->hdr.space.free; + + did = H5Dopen(group, name); + assert(did > 0); + + /* Update dataset metadata info */ + iter->datasets_btree_storage_size += oi->meta_size.obj.index_size; + + /* Update attribute metadata info */ + ret = attribute_stats(iter, oi); + assert(ret >= 0); + + /* Get storage info */ + storage = H5Dget_storage_size(did); + iter->dset_storage_size += storage; + + /* Gather dataspace statistics */ + sid = H5Dget_space(did); + assert(sid > 0); + + ndims = H5Sget_simple_extent_dims(sid, dims, NULL); + assert(ndims >= 0); + + /* Check for larger rank of dataset */ + if((unsigned)ndims > iter->max_dset_rank) + iter->max_dset_rank = ndims; + + /* Track the number of datasets with each rank */ + (iter->dset_rank_count[ndims])++; + + /* Only gather dim size statistics on 1-D datasets */ + if(ndims == 1) { + iter->max_dset_dims = dims[0]; + if(dims[0] < SIZE_SMALL_DSETS) + (iter->small_dset_dims[(size_t)dims[0]])++; + + /* Add dim count to proper bin */ + bin = ceil_log10((unsigned long)dims[0]); + if((bin + 1) > iter->dset_dim_nbins) { + /* Allocate more storage for info about dataset's datatype */ + iter->dset_dim_bins = realloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long)); + assert(iter->dset_dim_bins); + + /* Initialize counts for intermediate bins */ + while(iter->dset_dim_nbins < bin) + iter->dset_dim_bins[iter->dset_dim_nbins++] = 0; + iter->dset_dim_nbins++; + + /* Initialize count for this bin */ + iter->dset_dim_bins[bin] = 1; + } /* end if */ + else + (iter->dset_dim_bins[bin])++; + } /* end if */ + + ret = H5Sclose(sid); + assert(ret >= 0); + + /* Gather datatype statistics */ + tid = H5Dget_type(did); + assert(tid > 0); + + type_found = FALSE; + for(u = 0; u < iter->dset_ntypes; u++) + if(H5Tequal(iter->dset_type_info[u].tid, tid) > 0) { + type_found = TRUE; + break; + } /* end for */ + if(type_found) + (iter->dset_type_info[u].count)++; + else { + unsigned curr_ntype = iter->dset_ntypes; + + /* Increment # of datatypes seen for datasets */ + iter->dset_ntypes++; + + /* Allocate more storage for info about dataset's datatype */ + iter->dset_type_info = realloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t)); + assert(iter->dset_type_info); + + /* Initialize information about datatype */ + iter->dset_type_info[curr_ntype].tid = H5Tcopy(tid); + assert(iter->dset_type_info[curr_ntype].tid > 0); + iter->dset_type_info[curr_ntype].count = 1; + iter->dset_type_info[curr_ntype].named = 0; + + /* Set index for later */ + u = curr_ntype; + } /* end else */ + + /* Check if the datatype is a named datatype */ + if(H5Tcommitted(tid) > 0) + (iter->dset_type_info[u].named)++; + + ret = H5Tclose(tid); + assert(ret >= 0); + + /* Gather layout statistics */ + dcpl = H5Dget_create_plist(did); + assert(dcpl > 0); + + lout = H5Pget_layout(dcpl); + assert(lout >= 0); + + /* Track the layout type for dataset */ + (iter->dset_layouts[lout])++; + + num_ext = H5Pget_external_count(dcpl); + assert (num_ext >= 0); + + if(num_ext) + iter->nexternal = iter->nexternal + num_ext; + + /* Track different filters */ + if((nfltr = H5Pget_nfilters(dcpl)) >= 0) { + if(nfltr == 0) + iter->dset_comptype[0]++; + for(u = 0; u < (unsigned)nfltr; u++) { +#ifdef H5_WANT_H5_V1_6_COMPAT + fltr = H5Pget_filter(dcpl, u, 0, 0, 0, 0, 0); +#else /* H5_WANT_H5_V1_6_COMPAT */ + fltr = H5Pget_filter(dcpl, u, 0, 0, 0, 0, 0, NULL); +#endif /* H5_WANT_H5_V1_6_COMPAT */ + if(fltr < (H5_NFILTERS_IMPL - 1)) + iter->dset_comptype[fltr]++; + else + iter->dset_comptype[H5_NFILTERS_IMPL - 1]++; /*other filters*/ + } /* end for */ + } /* endif nfltr */ + + ret = H5Pclose(dcpl); + assert(ret >= 0); + + ret = H5Dclose(did); + assert(ret >= 0); + + return 0; +} /* end dataset_stats() */ + + +/*------------------------------------------------------------------------- + * Function: walk + * + * Purpose: Gather statistics about the file + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Quincey Koziol + * Tuesday, August 16, 2005 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static herr_t +walk(hid_t group, const char *name, void *_iter) +{ + iter_t *iter = (iter_t *)_iter; + H5O_info_t oi; + char *fullname = NULL; + char *s; + herr_t ret; /* Generic return value */ + + /* Get the full object name */ + fullname = fix_name(iter->container, name); + + /* Get object information */ + ret = H5Oget_info(group, name, &oi, H5P_DEFAULT); + assert(ret >= 0); + + /* If the object has already been printed then just show the object ID + * and return. */ + if((s = sym_lookup(&oi))) { + printf("%s same as %s\n", name, s); + } else { + sym_insert(&oi, fullname); + + /* Gather some statistics about the object */ + if(oi.rc > iter->max_links) + iter->max_links = oi.rc; + + switch(oi.type) { + case H5G_GROUP: + group_stats(group, name, fullname, &oi, walk, iter); + break; + + case H5G_DATASET: + dataset_stats(group, name, &oi, iter); + break; + + case H5G_TYPE: + /* Gather statistics about this type of object */ + iter->uniq_types++; + break; + + case H5G_LINK: + /* Gather statistics about links and UD links */ + iter->uniq_links++; + break; + + default: + /* Gather statistics about this type of object */ + iter->uniq_others++; + break; + } /* end switch */ + } + + if(fullname) + free(fullname); + + return 0; +} + + +/*------------------------------------------------------------------------- + * Function: parse_command_line + * + * Purpose: Parses command line and sets up global variable to control output + * + * Return: Success: 0 + * + * Failure: -1 + * + * Programmer: Elena Pourmal + * Saturday, August 12, 2006 + * + * Modifications: + * Vailin Choi 12 July 2007 + * Added 'A' option to display attribute info + * + *------------------------------------------------------------------------- + */ +static struct handler_t * +parse_command_line(int argc, const char *argv[]) +{ + int opt, i; + struct handler_t *hand; + + /* Allocate space to hold the command line info */ + hand = calloc((size_t)argc, sizeof(struct handler_t)); + + /* parse command line options */ + while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { + switch ((char)opt) { + case 'A': + display_all = FALSE; + display_attr = TRUE; + break; + case 'F': + display_all = FALSE; + display_file_metadata = TRUE; + break; + case 'f': + display_all = FALSE; + display_file = TRUE; + break; + case 'G': + display_all = FALSE; + display_group_metadata = TRUE; + break; + case 'g': + display_all = FALSE; + display_group = TRUE; + break; + case 'T': + display_all = FALSE; + display_dtype_metadata = TRUE; + break; + case 'D': + display_all = FALSE; + display_dset_metadata = TRUE; + break; + case 'd': + display_all = FALSE; + display_dset = TRUE; + break; + case 'h': + usage(progname); + leave(EXIT_SUCCESS); + case 'V': + print_version(progname); + leave(EXIT_SUCCESS); + break; + case 'O': + display_object = TRUE; + for (i = 0; i < argc; i++) + if (!hand[i].obj) { + hand[i].obj = HDstrdup(opt_arg); + hand[i].flag = 1; + break; + } + break; + default: + usage(progname); + leave(EXIT_FAILURE); + } + } + + /* check for file name to be processed */ + if (argc <= opt_ind) { + error_msg(progname, "missing file name\n"); + usage(progname); + leave(EXIT_FAILURE); + } + return hand; +} + + +/*------------------------------------------------------------------------- + * Function: init_iter + * + * Purpose: Initialize iter structure + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Saturday, August 12, 2006 + * + *------------------------------------------------------------------------- + */ +static herr_t +iter_init(iter_t *iter) +{ + /* Clear everything to zeros */ + memset(iter, 0, sizeof(*iter)); + + /* Initialize non-zero information */ + iter->container = "/"; + + return 0; +} + + +/*------------------------------------------------------------------------- + * Function: print_file_info + * + * Purpose: Prints information about file + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Saturday, August 12, 2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static herr_t +print_file_info(const iter_t *iter) +{ + printf("File information\n"); + printf("\t# of unique groups: %lu\n", iter->uniq_groups); + printf("\t# of unique datasets: %lu\n", iter->uniq_dsets); + printf("\t# of unique named dataypes: %lu\n", iter->uniq_types); + printf("\t# of unique links: %lu\n", iter->uniq_links); + printf("\t# of unique other: %lu\n", iter->uniq_others); + printf("\tMax. # of links to object: %lu\n", iter->max_links); + printf("\tMax. depth of hierarchy: %lu\n", iter->max_depth); + HDfprintf(stdout, "\tMax. # of objects in group: %Hu\n", iter->max_fanout); + + return 0; +} + + +/*------------------------------------------------------------------------- + * Function: print_file_metadata + * + * Purpose: Prints metadata information about file + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Saturday, August 12, 2006 + * + * Modifications: + * Vailin Choi 12 July 2007 + * Print storage info for: + * 1. btree/heap storage for groups and attributes + * 2. btree storage for chunked dataset + * 3. hdr/btree/list/heap storage for SOHM table + * 4. superblock extension size + * + *------------------------------------------------------------------------- + */ +static herr_t +print_file_metadata(const iter_t *iter) +{ + printf("Object header size: (total/unused)\n"); + HDfprintf(stdout, "\tGroups: %Hu/%Hu\n", iter->group_ohdr_info.total_size, + iter->group_ohdr_info.free_size); + HDfprintf(stdout, "\tDatasets: %Hu/%Hu\n", iter->dset_ohdr_info.total_size, + iter->dset_ohdr_info.free_size); + + printf("Storage information:\n"); + HDfprintf(stdout, "\tGroups:\n"); + HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->groups_btree_storage_size); + HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->groups_heap_storage_size); + + HDfprintf(stdout, "\tAttributes:\n"); + HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->attrs_btree_storage_size); + HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->attrs_heap_storage_size); + + HDfprintf(stdout, "\tChunked datasets:\n"); + HDfprintf(stdout, "\t\tB-tree: %Hu\n", iter->datasets_btree_storage_size); + + HDfprintf(stdout, "\tShared Messages:\n"); + HDfprintf(stdout, "\t\tHeader: %Hu\n", iter->SM_hdr_storage_size); + HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->SM_index_storage_size); + HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->SM_heap_storage_size); + + HDfprintf(stdout, "\tSuperblock extension: %Hu\n", iter->super_ext_size); + + return 0; +} + + +/*------------------------------------------------------------------------- + * Function: print_group_info + * + * Purpose: Prints information about groups in the file + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Saturday, August 12, 2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static herr_t +print_group_info(const iter_t *iter) +{ + unsigned long power; /* Temporary "power" for bins */ + unsigned long total; /* Total count for various statistics */ + unsigned u; /* Local index variable */ + + printf("Small groups:\n"); + total = 0; + for(u = 0; u < SIZE_SMALL_GROUPS; u++) { + if(iter->num_small_groups[u] > 0) { + printf("\t# of groups of size %u: %lu\n", u, iter->num_small_groups[u]); + total += iter->num_small_groups[u]; + } /* end if */ + } /* end for */ + printf("\tTotal # of small groups: %lu\n", total); + + printf("Group bins:\n"); + total = 0; + if(iter->group_bins[0] > 0) { + printf("\t# of groups of size 0: %lu\n", iter->group_bins[0]); + total = iter->group_bins[0]; + } /* end if */ + power = 1; + for(u = 1; u < iter->group_nbins; u++) { + if(iter->group_bins[u] > 0) { + printf("\t# of groups of size %lu - %lu: %lu\n", power, (power * 10) - 1, + iter->group_bins[u]); + total += iter->group_bins[u]; + } /* end if */ + power *= 10; + } /* end for */ + printf("\tTotal # of groups: %lu\n", total); + + return 0; +} + + +/*------------------------------------------------------------------------- + * Function: print_attr_info + * + * Purpose: Prints information about attributes in the file + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Vailin Choi + * July 12, 2007 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static herr_t +print_attr_info(const iter_t *iter) +{ + unsigned long power; /* Temporary "power" for bins */ + unsigned long total; /* Total count for various statistics */ + unsigned u; /* Local index variable */ + + printf("Small # of attributes:\n"); + total = 0; + for(u = 1; u < SIZE_SMALL_ATTRS; u++) { + if(iter->num_small_attrs[u] > 0) { + printf("\t# of objects with %u attributes: %lu\n", u, iter->num_small_attrs[u]); + total += iter->num_small_attrs[u]; + } /* end if */ + } /* end for */ + printf("\tTotal # of objects with small # of attributes: %lu\n", total); + + printf("Attribute bins:\n"); + total = 0; + power = 1; + for(u = 1; u < iter->attr_nbins; u++) { + if(iter->attr_bins[u] > 0) { + printf("\t# of objects with %lu - %lu attributes: %lu\n", power, (power * 10) - 1, + iter->attr_bins[u]); + total += iter->attr_bins[u]; + } /* end if */ + power *= 10; + } /* end for */ + printf("\tTotal # of objects with attributes: %lu\n", total); + printf("\tMax. # of attributes to objects: %lu\n", (unsigned long)iter->max_attrs); + + return 0; +} + + +/*------------------------------------------------------------------------- + * Function: print_dataset_info + * + * Purpose: Prints information about datasets in the file + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Saturday, August 12, 2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static herr_t +print_dataset_info(const iter_t *iter) +{ + unsigned long power; /* Temporary "power" for bins */ + unsigned long total; /* Total count for various statistics */ + size_t dtype_size; /* Size of encoded datatype */ + unsigned u; /* Local index variable */ + + if(iter->uniq_dsets > 0) { + printf("Dataset dimension information:\n"); + printf("\tMax. rank of datasets: %lu\n", iter->max_dset_rank); + printf("\tDataset ranks:\n"); + for(u = 0; u < H5S_MAX_RANK; u++) + if(iter->dset_rank_count[u] > 0) + printf("\t\t# of dataset with rank %u: %lu\n", u, iter->dset_rank_count[u]); + + printf("1-D Dataset information:\n"); + HDfprintf(stdout, "\tMax. dimension size of 1-D datasets: %Hu\n", iter->max_dset_dims); + printf("\tSmall 1-D datasets:\n"); + total = 0; + for(u = 0; u < SIZE_SMALL_DSETS; u++) { + if(iter->small_dset_dims[u] > 0) { + printf("\t\t# of dataset dimensions of size %u: %lu\n", u, + iter->small_dset_dims[u]); + total += iter->small_dset_dims[u]; + } /* end if */ + } /* end for */ + printf("\t\tTotal small datasets: %lu\n", total); + + /* Protect against no datasets in file */ + if(iter->dset_dim_nbins > 0) { + printf("\t1-D Dataset dimension bins:\n"); + total = 0; + if(iter->dset_dim_bins[0] > 0) { + printf("\t\t# of datasets of size 0: %lu\n", iter->dset_dim_bins[0]); + total = iter->dset_dim_bins[0]; + } /* end if */ + power = 1; + for(u = 1; u < iter->dset_dim_nbins; u++) { + if(iter->dset_dim_bins[u] > 0) { + printf("\t\t# of datasets of size %lu - %lu: %lu\n", power, (power * 10) - 1, + iter->dset_dim_bins[u]); + total += iter->dset_dim_bins[u]; + } /* end if */ + power *= 10; + } /* end for */ + printf("\t\tTotal # of datasets: %lu\n", total); + } /* end if */ + + printf("Dataset storage information:\n"); + HDfprintf(stdout, "\tTotal raw data size: %Hu\n", iter->dset_storage_size); + + printf("Dataset layout information:\n"); + for(u = 0; u < H5D_NLAYOUTS; u++) + printf("\tDataset layout counts[%s]: %lu\n", (u == 0 ? "COMPACT" : + (u == 1 ? "CONTIG" : "CHUNKED")), iter->dset_layouts[u]); + printf("\tNumber of external files : %lu\n", iter->nexternal); + + printf("Dataset filters information:\n"); + printf("\tNumber of datasets with:\n"); + printf("\t\tNO filter: %lu\n", iter->dset_comptype[H5Z_FILTER_ERROR+1]); + printf("\t\tGZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_DEFLATE]); + printf("\t\tSHUFFLE filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SHUFFLE]); + printf("\t\tFLETCHER32 filter: %lu\n", iter->dset_comptype[H5Z_FILTER_FLETCHER32]); + printf("\t\tSZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SZIP]); + printf("\t\tNBIT filter: %lu\n", iter->dset_comptype[H5Z_FILTER_NBIT]); + printf("\t\tSCALEOFFSET filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SCALEOFFSET]); + printf("\t\tUSER-DEFINED filter: %lu\n", iter->dset_comptype[H5_NFILTERS_IMPL-1]); + + if(display_dtype_metadata) { + printf("Dataset datatype information:\n"); + printf("\t# of unique datatypes used by datasets: %lu\n", iter->dset_ntypes); + total = 0; + for(u = 0; u < iter->dset_ntypes; u++) { + H5Tencode(iter->dset_type_info[u].tid, NULL, &dtype_size); + printf("\tDataset datatype #%u:\n", u); + printf("\t\tCount (total/named) = (%lu/%lu)\n", iter->dset_type_info[u].count, iter->dset_type_info[u].named); + printf("\t\tSize (desc./elmt) = (%lu/%lu)\n", (unsigned long)dtype_size, + (unsigned long)H5Tget_size(iter->dset_type_info[u].tid)); + H5Tclose(iter->dset_type_info[u].tid); + total += iter->dset_type_info[u].count; + } /* end for */ + printf("\tTotal dataset datatype count: %lu\n", total); + } + } /* end if */ + + return 0; +} + + +/*------------------------------------------------------------------------- + * Function: print_file_statistics + * + * Purpose: Prints file statistics + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Saturday, August 12, 2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static void +print_file_statistics(const iter_t *iter) +{ + if(display_all) { + display_file = TRUE; + display_file_metadata = TRUE; + display_group = TRUE; + display_group_metadata = TRUE; + display_dset = TRUE; + display_dtype_metadata = TRUE; + display_attr = TRUE; + } + + if(display_file) print_file_info(iter); + if(display_file_metadata) print_file_metadata(iter); + if(display_group) print_group_info(iter); + if(display_dset) print_dataset_info(iter); + if(display_attr) print_attr_info(iter); +} + + +/*------------------------------------------------------------------------- + * Function: print_object_statistics + * + * Purpose: Prints object statistics + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Thursday, August 17, 2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static void +print_object_statistics(const char *name) +{ + printf("Object name %s\n", name); +} + + +/*------------------------------------------------------------------------- + * Function: print_statistics + * + * Purpose: Prints statistics + * + * Return: Success: 0 + * + * Failure: Never fails + * + * Programmer: Elena Pourmal + * Thursday, August 17, 2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static void +print_statistics(const char *name, const iter_t *iter) +{ + if(display_object) + print_object_statistics(name); + else + print_file_statistics(iter); +} + + +int +main(int argc, const char *argv[]) +{ + iter_t iter; + const char *fname = NULL; + hid_t fid; + struct handler_t *hand; + char root[] = "/"; + int i; + H5F_info_t finfo; + + + /* Disable error reporting */ + H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + + /* Initialize h5tools lib */ + h5tools_init(); + hand = parse_command_line (argc, argv); + if (!hand) { + error_msg(progname, "unable to parse command line arguments \n"); + leave(EXIT_FAILURE); + } + + fname = argv[opt_ind]; + hand[opt_ind].obj = root; + hand[opt_ind].flag = 1; + if (display_object) hand[opt_ind].flag = 0; + + printf("Filename: %s\n", fname); + + fid = H5Fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT); + if (fid < 0) { + error_msg(progname, "unable to open file \"%s\"\n", fname); + leave(EXIT_FAILURE); + } + + /* Initialize iter structure */ + iter_init(&iter); + + /* Get storge info for SOHM's btree/list/heap and superblock extension */ + if(H5Fget_info(fid, &finfo) < 0) + warn_msg(progname, "Unable to retrieve SOHM info\n"); + else { + iter.super_ext_size = finfo.super_ext_size; + iter.SM_hdr_storage_size = finfo.sohm.hdr_size; + iter.SM_index_storage_size = finfo.sohm.msgs_info.index_size; + iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size; + } + + /* Walk the objects or all file */ + for(i = 0; i < argc; i++) { + if(hand[i].obj) { + if(hand[i].flag) { + walk(fid, hand[i].obj, &iter); + print_statistics(hand[i].obj, &iter); + } + } + } + + free(hand); + + if(H5Fclose(fid) < 0) { + error_msg(progname, "unable to close file \"%s\"\n", fname); + leave(EXIT_FAILURE); + } + + leave(EXIT_SUCCESS); +} + diff --git a/tools/h5stat/h5stat_gentest.c b/tools/h5stat/h5stat_gentest.c new file mode 100644 index 0000000..f0219bd --- /dev/null +++ b/tools/h5stat/h5stat_gentest.c @@ -0,0 +1,84 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * Generate the binary hdf5 files for the h5stat tests. + * Usage: just execute the program without any arguments will + * generate all the binary hdf5 files in the ./testfiles directory. + * + * If you regenerate the test files (e.g., changing some code, + * trying it on a new platform, ...), you need to verify the correctness + * of the expected output and update the corresponding *.ddl files. + */ + +#include "hdf5.h" + +#define FILE "h5stat_newgrat.h5" +#define DATASET_NAME "DATASET_NAME" +#define GROUP_NAME "GROUP" +#define ATTR_NAME "ATTR" +#define NUM_GRPS 350 +#define NUM_ATTRS 100 + +/* + * Generate 1.8 HDF5 file + * with NUM_GRPS groups + * with NUM_ATTRS for the + */ +static void gen_file(void) +{ + int ret, i; + hid_t fapl, gid; + hid_t file, type_id, space_id, attr_id, dset_id; + char name[30]; + char attrname[30]; + + + fapl = H5Pcreate(H5P_FILE_ACCESS); + ret = H5Pset_latest_format(fapl,1); + + /* Create dataset */ + file=H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + for (i=1; i<=NUM_GRPS; i++) { + sprintf(name, "%s%d", GROUP_NAME,i); + gid = H5Gcreate(file, name, (size_t)0); + H5Gclose(gid); + } + + + /* Create a datatype to commit and use */ + type_id=H5Tcopy(H5T_NATIVE_INT); + /* Create dataspace for dataset */ + space_id=H5Screate(H5S_SCALAR); + /* Create dataset */ + dset_id=H5Dcreate(file, DATASET_NAME,type_id,space_id,H5P_DEFAULT); + for (i=1; i<=NUM_ATTRS; i++) { + sprintf(attrname, "%s%d", ATTR_NAME,i); + attr_id=H5Acreate(dset_id,attrname, type_id,space_id,H5P_DEFAULT); + ret=H5Aclose(attr_id); + } + + ret=H5Dclose(dset_id); + ret=H5Sclose(space_id); + ret=H5Tclose(type_id); + ret=H5Fclose(file); +} + +int main(void) +{ + gen_file(); + + return 0; +} diff --git a/tools/h5stat/testfiles/h5stat_filters-F.ddl b/tools/h5stat/testfiles/h5stat_filters-F.ddl new file mode 100644 index 0000000..544d0c7 --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_filters-F.ddl @@ -0,0 +1,21 @@ +############################# +Expected output for 'h5stat -F h5stat_filters.h5' +############################# +Filename: h5stat_filters.h5 +Object header size: (total/unused) + Groups: 48/8 + Datasets: 4936/1344 +Storage information: + Groups: + B-tree/List: 1200 + Heap: 288 + Attributes: + B-tree/List: 0 + Heap: 0 + Chunked datasets: + B-tree: 31392 + Shared Messages: + Header: 0 + B-tree/List: 0 + Heap: 0 + Superblock extension: 0 diff --git a/tools/h5stat/testfiles/h5stat_filters-d.ddl b/tools/h5stat/testfiles/h5stat_filters-d.ddl new file mode 100644 index 0000000..e83c6c4 --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_filters-d.ddl @@ -0,0 +1,33 @@ +############################# +Expected output for 'h5stat -d h5stat_filters.h5' +############################# +Filename: h5stat_filters.h5 +Dataset dimension information: + Max. rank of datasets: 2 + Dataset ranks: + # of dataset with rank 1: 1 + # of dataset with rank 2: 14 +1-D Dataset information: + Max. dimension size of 1-D datasets: 100 + Small 1-D datasets: + Total small datasets: 0 + 1-D Dataset dimension bins: + # of datasets of size 100 - 999: 1 + Total # of datasets: 1 +Dataset storage information: + Total raw data size: 8659 +Dataset layout information: + Dataset layout counts[COMPACT]: 1 + Dataset layout counts[CONTIG]: 2 + Dataset layout counts[CHUNKED]: 12 + Number of external files : 2 +Dataset filters information: + Number of datasets with: + NO filter: 7 + GZIP filter: 2 + SHUFFLE filter: 2 + FLETCHER32 filter: 2 + SZIP filter: 2 + NBIT filter: 2 + SCALEOFFSET filter: 1 + USER-DEFINED filter: 1 diff --git a/tools/h5stat/testfiles/h5stat_filters-dT.ddl b/tools/h5stat/testfiles/h5stat_filters-dT.ddl new file mode 100644 index 0000000..62735f0 --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_filters-dT.ddl @@ -0,0 +1,42 @@ +############################# +Expected output for 'h5stat -dT h5stat_filters.h5' +############################# +Filename: h5stat_filters.h5 +Dataset dimension information: + Max. rank of datasets: 2 + Dataset ranks: + # of dataset with rank 1: 1 + # of dataset with rank 2: 14 +1-D Dataset information: + Max. dimension size of 1-D datasets: 100 + Small 1-D datasets: + Total small datasets: 0 + 1-D Dataset dimension bins: + # of datasets of size 100 - 999: 1 + Total # of datasets: 1 +Dataset storage information: + Total raw data size: 8659 +Dataset layout information: + Dataset layout counts[COMPACT]: 1 + Dataset layout counts[CONTIG]: 2 + Dataset layout counts[CHUNKED]: 12 + Number of external files : 2 +Dataset filters information: + Number of datasets with: + NO filter: 7 + GZIP filter: 2 + SHUFFLE filter: 2 + FLETCHER32 filter: 2 + SZIP filter: 2 + NBIT filter: 2 + SCALEOFFSET filter: 1 + USER-DEFINED filter: 1 +Dataset datatype information: + # of unique datatypes used by datasets: 2 + Dataset datatype #0: + Count (total/named) = (14/0) + Size (desc./elmt) = (14/4) + Dataset datatype #1: + Count (total/named) = (1/0) + Size (desc./elmt) = (14/4) + Total dataset datatype count: 15 diff --git a/tools/h5stat/testfiles/h5stat_filters-file.ddl b/tools/h5stat/testfiles/h5stat_filters-file.ddl new file mode 100644 index 0000000..c6aeef0 --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_filters-file.ddl @@ -0,0 +1,13 @@ +############################# +Expected output for 'h5stat -f h5stat_filters.h5' +############################# +Filename: h5stat_filters.h5 +File information + # of unique groups: 1 + # of unique datasets: 15 + # of unique named dataypes: 1 + # of unique links: 0 + # of unique other: 0 + Max. # of links to object: 1 + Max. depth of hierarchy: 0 + Max. # of objects in group: 16 diff --git a/tools/h5stat/testfiles/h5stat_filters-g.ddl b/tools/h5stat/testfiles/h5stat_filters-g.ddl new file mode 100644 index 0000000..d488b8f --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_filters-g.ddl @@ -0,0 +1,9 @@ +############################# +Expected output for 'h5stat -g h5stat_filters.h5' +############################# +Filename: h5stat_filters.h5 +Small groups: + Total # of small groups: 0 +Group bins: + # of groups of size 10 - 99: 1 + Total # of groups: 1 diff --git a/tools/h5stat/testfiles/h5stat_filters.ddl b/tools/h5stat/testfiles/h5stat_filters.ddl new file mode 100644 index 0000000..4dd6aee --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_filters.ddl @@ -0,0 +1,78 @@ +############################# +Expected output for 'h5stat h5stat_filters.h5' +############################# +Filename: h5stat_filters.h5 +File information + # of unique groups: 1 + # of unique datasets: 15 + # of unique named dataypes: 1 + # of unique links: 0 + # of unique other: 0 + Max. # of links to object: 1 + Max. depth of hierarchy: 0 + Max. # of objects in group: 16 +Object header size: (total/unused) + Groups: 48/8 + Datasets: 4936/1344 +Storage information: + Groups: + B-tree/List: 1200 + Heap: 288 + Attributes: + B-tree/List: 0 + Heap: 0 + Chunked datasets: + B-tree: 31392 + Shared Messages: + Header: 0 + B-tree/List: 0 + Heap: 0 + Superblock extension: 0 +Small groups: + Total # of small groups: 0 +Group bins: + # of groups of size 10 - 99: 1 + Total # of groups: 1 +Dataset dimension information: + Max. rank of datasets: 2 + Dataset ranks: + # of dataset with rank 1: 1 + # of dataset with rank 2: 14 +1-D Dataset information: + Max. dimension size of 1-D datasets: 100 + Small 1-D datasets: + Total small datasets: 0 + 1-D Dataset dimension bins: + # of datasets of size 100 - 999: 1 + Total # of datasets: 1 +Dataset storage information: + Total raw data size: 8659 +Dataset layout information: + Dataset layout counts[COMPACT]: 1 + Dataset layout counts[CONTIG]: 2 + Dataset layout counts[CHUNKED]: 12 + Number of external files : 2 +Dataset filters information: + Number of datasets with: + NO filter: 7 + GZIP filter: 2 + SHUFFLE filter: 2 + FLETCHER32 filter: 2 + SZIP filter: 2 + NBIT filter: 2 + SCALEOFFSET filter: 1 + USER-DEFINED filter: 1 +Dataset datatype information: + # of unique datatypes used by datasets: 2 + Dataset datatype #0: + Count (total/named) = (14/0) + Size (desc./elmt) = (14/4) + Dataset datatype #1: + Count (total/named) = (1/0) + Size (desc./elmt) = (14/4) + Total dataset datatype count: 15 +Small # of attributes: + Total # of objects with small # of attributes: 0 +Attribute bins: + Total # of objects with attributes: 0 + Max. # of attributes to objects: 0 diff --git a/tools/h5stat/testfiles/h5stat_filters.h5 b/tools/h5stat/testfiles/h5stat_filters.h5 Binary files differnew file mode 100644 index 0000000..5b5f4bb --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_filters.h5 diff --git a/tools/h5stat/testfiles/h5stat_help1.ddl b/tools/h5stat/testfiles/h5stat_help1.ddl new file mode 100644 index 0000000..0841572 --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_help1.ddl @@ -0,0 +1,24 @@ +############################# +Expected output for 'h5stat -h' +############################# + +This tool is under development. For detailed information +please see the specification document at +http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf + +Please send your comments and questions to help@hdfgroup.org + +Usage: h5stat [OPTIONS] file + + OPTIONS + -h, --help Print a usage message and exit + -V, --version Print version number and exit + -f, --file Print file information + -F, --filemetadata Print file metadata + -g, --group Print group information + -G, --groupmetadata Print group metadata + -d, --dset Print dataset information + -D, --dsetmetadata Print dataset metadata + -T, --dtypemetadata Print datatype metadata + -A, --attribute Print attribute information + diff --git a/tools/h5stat/testfiles/h5stat_help2.ddl b/tools/h5stat/testfiles/h5stat_help2.ddl new file mode 100644 index 0000000..1e6295b --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_help2.ddl @@ -0,0 +1,24 @@ +############################# +Expected output for 'h5stat --help' +############################# + +This tool is under development. For detailed information +please see the specification document at +http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf + +Please send your comments and questions to help@hdfgroup.org + +Usage: h5stat [OPTIONS] file + + OPTIONS + -h, --help Print a usage message and exit + -V, --version Print version number and exit + -f, --file Print file information + -F, --filemetadata Print file metadata + -g, --group Print group information + -G, --groupmetadata Print group metadata + -d, --dset Print dataset information + -D, --dsetmetadata Print dataset metadata + -T, --dtypemetadata Print datatype metadata + -A, --attribute Print attribute information + diff --git a/tools/h5stat/testfiles/h5stat_newgrat.ddl b/tools/h5stat/testfiles/h5stat_newgrat.ddl new file mode 100644 index 0000000..228d565 --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_newgrat.ddl @@ -0,0 +1,74 @@ +############################# +Expected output for 'h5stat h5stat_newgrat.h5' +############################# +Filename: h5stat_newgrat.h5 +File information + # of unique groups: 351 + # of unique datasets: 1 + # of unique named dataypes: 0 + # of unique links: 0 + # of unique other: 0 + Max. # of links to object: 1 + Max. depth of hierarchy: 1 + Max. # of objects in group: 351 +Object header size: (total/unused) + Groups: 51597/32292 + Datasets: 414/312 +Storage information: + Groups: + B-tree/List: 5158 + Heap: 7643 + Attributes: + B-tree/List: 2598 + Heap: 4442 + Chunked datasets: + B-tree: 0 + Shared Messages: + Header: 0 + B-tree/List: 0 + Heap: 0 + Superblock extension: 0 +Small groups: + # of groups of size 0: 350 + Total # of small groups: 350 +Group bins: + # of groups of size 0: 350 + # of groups of size 100 - 999: 1 + Total # of groups: 351 +Dataset dimension information: + Max. rank of datasets: 0 + Dataset ranks: + # of dataset with rank 0: 1 +1-D Dataset information: + Max. dimension size of 1-D datasets: 0 + Small 1-D datasets: + Total small datasets: 0 +Dataset storage information: + Total raw data size: 0 +Dataset layout information: + Dataset layout counts[COMPACT]: 0 + Dataset layout counts[CONTIG]: 1 + Dataset layout counts[CHUNKED]: 0 + Number of external files : 0 +Dataset filters information: + Number of datasets with: + NO filter: 1 + GZIP filter: 0 + SHUFFLE filter: 0 + FLETCHER32 filter: 0 + SZIP filter: 0 + NBIT filter: 0 + SCALEOFFSET filter: 0 + USER-DEFINED filter: 0 +Dataset datatype information: + # of unique datatypes used by datasets: 1 + Dataset datatype #0: + Count (total/named) = (1/0) + Size (desc./elmt) = (14/4) + Total dataset datatype count: 1 +Small # of attributes: + Total # of objects with small # of attributes: 0 +Attribute bins: + # of objects with 100 - 999 attributes: 1 + Total # of objects with attributes: 1 + Max. # of attributes to objects: 100 diff --git a/tools/h5stat/testfiles/h5stat_newgrat.h5 b/tools/h5stat/testfiles/h5stat_newgrat.h5 Binary files differnew file mode 100644 index 0000000..cab98bb --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_newgrat.h5 diff --git a/tools/h5stat/testfiles/h5stat_tsohm.ddl b/tools/h5stat/testfiles/h5stat_tsohm.ddl new file mode 100644 index 0000000..572965e --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_tsohm.ddl @@ -0,0 +1,72 @@ +############################# +Expected output for 'h5stat h5stat_tsohm.h5' +############################# +Filename: h5stat_tsohm.h5 +File information + # of unique groups: 1 + # of unique datasets: 2 + # of unique named dataypes: 0 + # of unique links: 0 + # of unique other: 0 + Max. # of links to object: 1 + Max. depth of hierarchy: 0 + Max. # of objects in group: 2 +Object header size: (total/unused) + Groups: 51/2 + Datasets: 568/358 +Storage information: + Groups: + B-tree/List: 872 + Heap: 120 + Attributes: + B-tree/List: 0 + Heap: 0 + Chunked datasets: + B-tree: 0 + Shared Messages: + Header: 38 + B-tree/List: 550 + Heap: 1316 + Superblock extension: 40 +Small groups: + # of groups of size 2: 1 + Total # of small groups: 1 +Group bins: + # of groups of size 1 - 9: 1 + Total # of groups: 1 +Dataset dimension information: + Max. rank of datasets: 2 + Dataset ranks: + # of dataset with rank 2: 2 +1-D Dataset information: + Max. dimension size of 1-D datasets: 0 + Small 1-D datasets: + Total small datasets: 0 +Dataset storage information: + Total raw data size: 0 +Dataset layout information: + Dataset layout counts[COMPACT]: 0 + Dataset layout counts[CONTIG]: 0 + Dataset layout counts[CHUNKED]: 2 + Number of external files : 0 +Dataset filters information: + Number of datasets with: + NO filter: 2 + GZIP filter: 0 + SHUFFLE filter: 0 + FLETCHER32 filter: 0 + SZIP filter: 0 + NBIT filter: 0 + SCALEOFFSET filter: 0 + USER-DEFINED filter: 0 +Dataset datatype information: + # of unique datatypes used by datasets: 1 + Dataset datatype #0: + Count (total/named) = (2/0) + Size (desc./elmt) = (14/4) + Total dataset datatype count: 2 +Small # of attributes: + Total # of objects with small # of attributes: 0 +Attribute bins: + Total # of objects with attributes: 0 + Max. # of attributes to objects: 0 diff --git a/tools/h5stat/testfiles/h5stat_tsohm.h5 b/tools/h5stat/testfiles/h5stat_tsohm.h5 Binary files differnew file mode 100644 index 0000000..45ee36c --- /dev/null +++ b/tools/h5stat/testfiles/h5stat_tsohm.h5 diff --git a/tools/h5stat/testh5stat.sh.in b/tools/h5stat/testh5stat.sh.in new file mode 100644 index 0000000..66d05be --- /dev/null +++ b/tools/h5stat/testh5stat.sh.in @@ -0,0 +1,135 @@ +#! /bin/sh +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +# +# Tests for the h5dump tool + +# Determine which filters are available +USE_FILTER_SZIP="@USE_FILTER_SZIP@" +USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" +USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@" +USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@" +USE_FILTER_NBIT="@USE_FILTER_NBIT@" +USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@" + +STAT=h5stat # The tool name +STAT_BIN=`pwd`/$STAT # The path of the tool binary + +CMP='cmp -s' +DIFF='diff -c' + +nerrors=0 +verbose=yes + +# The build (current) directory might be different than the source directory. +if test -z "$srcdir"; then + srcdir=. +fi + +test -d ./testfiles || mkdir ./testfiles + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Testing". +# +TESTING() { + SPACES=" " + echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012' +} + +# Run a test and print PASS or *FAIL*. If a test fails then increment +# the `nerrors' global variable and (if $verbose is set) display the +# difference between the actual output and the expected output. The +# expected output is given as the first argument to this function and +# the actual output file is calculated by replacing the `.ddl' with +# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a +# non-zero value. +# +TOOLTEST() { + expect="$srcdir/testfiles/$1" + actual="./testfiles/`basename $1 .ddl`.out" + actual_err="./testfiles/`basename $1 .ddl`.err" + shift + + # Run test. + TESTING $STAT $@ + ( + echo "#############################" + echo "Expected output for '$STAT $@'" + echo "#############################" + cd $srcdir/testfiles + $RUNSERIAL $STAT_BIN $@ + ) >$actual 2>$actual_err + cat $actual_err >> $actual + + + if [ ! -f $expect ]; then + # Create the expect file if it doesn't yet exist. + echo " CREATED" + cp $actual $expect + elif $CMP $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.ddl) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err + fi +} + + +# Print a "SKIP" message +SKIP() { + TESTING $STAT $@ + echo " -SKIP-" +} + + + +############################################################################## +############################################################################## +### T H E T E S T S ### +############################################################################## +############################################################################## + +# Test for help flag +TOOLTEST h5stat_help1.ddl -h +TOOLTEST h5stat_help2.ddl --help + +# Test file with groups, compressed datasets, user-applied fileters, etc. +# h5stat_filters.h5 is a copy of ../../testfiles/tfilters.h5 as of release 1.8.0-alpha4 +TOOLTEST h5stat_filters.ddl h5stat_filters.h5 +TOOLTEST h5stat_filters-file.ddl -f h5stat_filters.h5 +TOOLTEST h5stat_filters-F.ddl -F h5stat_filters.h5 +TOOLTEST h5stat_filters-d.ddl -d h5stat_filters.h5 +TOOLTEST h5stat_filters-g.ddl -g h5stat_filters.h5 +TOOLTEST h5stat_filters-dT.ddl -dT h5stat_filters.h5 +# h5stat_tsohm.h5 is a copy of ../../../test/tsohm.h5 generated by tsohm.c +# as of release 1.8.0-alpha4 +TOOLTEST h5stat_tsohm.ddl h5stat_tsohm.h5 +# h5stat_newgrat.h5 is generated by h5stat_gentest.c +TOOLTEST h5stat_newgrat.ddl h5stat_newgrat.h5 +echo + + +if test $nerrors -eq 0 ; then + echo "All $STAT tests passed." +fi + +exit $nerrors + |