diff options
Diffstat (limited to 'tools/h5stat')
| -rw-r--r-- | tools/h5stat/h5stat.c | 166 | ||||
| -rw-r--r-- | tools/h5stat/testh5stat.sh.in | 1 |
2 files changed, 103 insertions, 64 deletions
diff --git a/tools/h5stat/h5stat.c b/tools/h5stat/h5stat.c index c58a9ef..708821e 100644 --- a/tools/h5stat/h5stat.c +++ b/tools/h5stat/h5stat.c @@ -15,7 +15,7 @@ #include <stdlib.h> #include <string.h> -#include "H5private.h" /* Generic Functions */ +#include "H5private.h" /* Generic Functions */ #include "h5tools.h" #include "h5tools_utils.h" #include "h5tools_ref.h" @@ -27,7 +27,7 @@ /* Parameters to control statistics gathered */ #define SIZE_SMALL_GROUPS 10 -#define SIZE_SMALL_ATTRS 10 +#define SIZE_SMALL_ATTRS 10 #define SIZE_SMALL_DSETS 10 #define H5_NFILTERS_IMPL 8 /* Number of currently implemented filters + one to @@ -65,7 +65,7 @@ typedef struct iter_t { unsigned long *group_bins; /* Pointer to array of bins for group counts */ ohdr_info_t group_ohdr_info; /* Object header information for groups */ - hsize_t max_attrs; /* Maximum attributes from a group */ + hsize_t max_attrs; /* Maximum attributes from a group */ unsigned long num_small_attrs[SIZE_SMALL_ATTRS]; /* Size of small attributes tracked */ unsigned attr_nbins; /* Number of bins for attribute counts */ unsigned long *attr_bins; /* Pointer to array of bins for attribute counts */ @@ -90,8 +90,8 @@ typedef struct iter_t { hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */ hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */ hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */ - hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */ - hsize_t super_ext_size; /* superblock extension size */ + hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */ + hsize_t super_ext_size; /* superblock extension size */ hsize_t ublk_size; /* user block size (if exists) */ hsize_t datasets_index_storage_size;/* meta size for chunked dataset's indexing type */ hsize_t datasets_heap_storage_size; /* heap size for dataset with external storage */ @@ -268,7 +268,7 @@ ceil_log10(unsigned long x) static herr_t attribute_stats(iter_t *iter, const H5O_info_t *oi) { - unsigned bin; /* "bin" the number of objects falls in */ + unsigned bin; /* "bin" the number of objects falls in */ /* Update dataset & attribute metadata info */ iter->attrs_btree_storage_size += oi->meta_size.attr.index_size; @@ -283,12 +283,12 @@ attribute_stats(iter_t *iter, const H5O_info_t *oi) /* Add attribute count to proper bin */ bin = ceil_log10((unsigned long)oi->num_attrs); if((bin + 1) > iter->attr_nbins) { - iter->attr_bins = (unsigned long *)realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long)); + iter->attr_bins = (unsigned long *)realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long)); assert(iter->attr_bins); - /* Initialize counts for intermediate bins */ + /* Initialize counts for intermediate bins */ while(iter->attr_nbins < bin) - iter->attr_bins[iter->attr_nbins++] = 0; + iter->attr_bins[iter->attr_nbins++] = 0; iter->attr_nbins++; /* Initialize count for new bin */ @@ -316,23 +316,23 @@ attribute_stats(iter_t *iter, const H5O_info_t *oi) * Modifications: Refactored code from the walk_function * EIP, Wednesday, August 16, 2006 * - * Vailin Choi 12 July 2007 - * 1. Gathered storage info for btree and heap - * (groups and attributes) - * 2. Gathered info for attributes + * Vailin Choi 12 July 2007 + * 1. Gathered storage info for btree and heap + * (groups and attributes) + * 2. Gathered info for attributes * - * Vailin Choi 14 July 2007 - * Cast "num_objs" and "num_attrs" to size_t - * Due to the -Mbounds problem for the pgi-32 bit compiler on indexing + * Vailin Choi 14 July 2007 + * Cast "num_objs" and "num_attrs" to size_t + * Due to the -Mbounds problem for the pgi-32 bit compiler on indexing * *------------------------------------------------------------------------- */ static herr_t group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) { - H5G_info_t ginfo; /* Group information */ - unsigned bin; /* "bin" the number of objects falls in */ - herr_t ret; + H5G_info_t ginfo; /* Group information */ + unsigned bin; /* "bin" the number of objects falls in */ + herr_t ret; /* Gather statistics about this type of object */ iter->uniq_groups++; @@ -358,7 +358,7 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) iter->group_bins = (unsigned long *)realloc(iter->group_bins, (bin + 1) * sizeof(unsigned long)); assert(iter->group_bins); - /* Initialize counts for intermediate bins */ + /* Initialize counts for intermediate bins */ while(iter->group_nbins < bin) iter->group_bins[iter->group_nbins++] = 0; iter->group_nbins++; @@ -402,22 +402,22 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) static herr_t dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) { - unsigned bin; /* "bin" the number of objects falls in */ - hid_t did; /* Dataset ID */ - hid_t sid; /* Dataspace ID */ - hid_t tid; /* Datatype ID */ - hid_t dcpl; /* Dataset creation property list ID */ - hsize_t dims[H5S_MAX_RANK];/* Dimensions of dataset */ - H5D_layout_t lout; /* Layout of dataset */ - unsigned type_found; /* Whether the dataset's datatype was */ - /* already found */ - int ndims; /* Number of dimensions of dataset */ - hsize_t storage; /* Size of dataset storage */ - unsigned u; /* Local index variable */ - int num_ext; /* Number of external files for a dataset */ - int nfltr; /* Number of filters for a dataset */ - H5Z_filter_t fltr; /* Filter identifier */ - herr_t ret; + unsigned bin; /* "bin" the number of objects falls in */ + hid_t did; /* Dataset ID */ + hid_t sid; /* Dataspace ID */ + hid_t tid; /* Datatype ID */ + hid_t dcpl; /* Dataset creation property list ID */ + hsize_t dims[H5S_MAX_RANK];/* Dimensions of dataset */ + H5D_layout_t lout; /* Layout of dataset */ + unsigned type_found; /* Whether the dataset's datatype was */ + /* already found */ + int ndims; /* Number of dimensions of dataset */ + hsize_t storage; /* Size of dataset storage */ + unsigned u; /* Local index variable */ + int num_ext; /* Number of external files for a dataset */ + int nfltr; /* Number of filters for a dataset */ + H5Z_filter_t fltr; /* Filter identifier */ + herr_t ret; /* Gather statistics about this type of object */ iter->uniq_dsets++; @@ -615,7 +615,7 @@ datatype_stats(iter_t *iter, const H5O_info_t *oi) * Purpose: Gather statistics about an object * * Return: Success: 0 - * Failure: -1 + * Failure: -1 * * Programmer: Quincey Koziol * Tuesday, November 6, 2007 @@ -644,7 +644,7 @@ obj_stats(const char *path, const H5O_info_t *oi, const char *already_visited, break; case H5O_TYPE_NAMED_DATATYPE: - datatype_stats(iter, oi); + datatype_stats(iter, oi); break; default: @@ -771,7 +771,7 @@ parse_command_line(int argc, const char *argv[]) case 'G': display_all = FALSE; - display_group_metadata = TRUE; + display_group_metadata = TRUE; break; case 'g': @@ -781,7 +781,7 @@ parse_command_line(int argc, const char *argv[]) case 'D': display_all = FALSE; - display_dset_metadata = TRUE; + display_dset_metadata = TRUE; break; case 'd': @@ -791,7 +791,7 @@ parse_command_line(int argc, const char *argv[]) case 'T': display_all = FALSE; - display_dset_dtype_meta = TRUE; + display_dset_dtype_meta = TRUE; break; case 'A': @@ -871,6 +871,41 @@ iter_init(iter_t *iter, hid_t fid) /*------------------------------------------------------------------------- + * Function: free_iter + * + * Purpose: Freee iter structure + * + * Return: Success: 0 + * + * Failure: Never fails + * + *------------------------------------------------------------------------- + */ +static herr_t +iter_free(iter_t *iter) +{ + /* Clear array of bins for group counts */ + if(iter->group_bins) + free(iter->group_bins); + iter->group_bins = NULL; + /* Clear array of bins for attribute counts */ + if(iter->attr_bins) + free(iter->attr_bins); + iter->attr_bins = NULL; + /* Clear dataset datatype information found */ + if(iter->dset_type_info) + free(iter->dset_type_info); + iter->dset_type_info = NULL; + /* Clear array of bins for dataset dimensions */ + if(iter->dset_dim_bins) + free(iter->dset_dim_bins); + iter->dset_dim_bins = NULL; + + return 0; +} + + +/*------------------------------------------------------------------------- * Function: print_file_info * * Purpose: Prints information about file @@ -931,13 +966,13 @@ print_file_metadata(const iter_t *iter) HDfprintf(stdout, "\tObject headers: (total/unused)\n"); HDfprintf(stdout, "\t\tGroups: %Hu/%Hu\n", iter->group_ohdr_info.total_size, - iter->group_ohdr_info.free_size); + iter->group_ohdr_info.free_size); HDfprintf(stdout, "\t\tDatasets(exclude compact data): %Hu/%Hu\n", - iter->dset_ohdr_info.total_size, - iter->dset_ohdr_info.free_size); + iter->dset_ohdr_info.total_size, + iter->dset_ohdr_info.free_size); HDfprintf(stdout, "\t\tDatatypes: %Hu/%Hu\n", iter->dtype_ohdr_info.total_size, - iter->dtype_ohdr_info.free_size); + iter->dtype_ohdr_info.free_size); HDfprintf(stdout, "\tGroups:\n"); HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->groups_btree_storage_size); @@ -975,9 +1010,9 @@ print_file_metadata(const iter_t *iter) * Saturday, August 12, 2006 * * Modifications: - * bug #1253; Oct 6th 2008; Vailin Choi - * Fixed segmentation fault: print iter->group_bins[0] when - * there is iter->group_nbins + * bug #1253; Oct 6th 2008; Vailin Choi + * Fixed segmentation fault: print iter->group_bins[0] when + * there is iter->group_nbins * *------------------------------------------------------------------------- */ @@ -1115,7 +1150,7 @@ print_dataset_info(const iter_t *iter) printf("Dataset storage information:\n"); HDfprintf(stdout, "\tTotal raw data size: %Hu\n", iter->dset_storage_size); - HDfprintf(stdout, "\tTotal external raw data size: %Hu\n", iter->dset_external_storage_size); + HDfprintf(stdout, "\tTotal external raw data size: %Hu\n", iter->dset_external_storage_size); printf("Dataset layout information:\n"); for(u = 0; u < H5D_NLAYOUTS; u++) @@ -1367,12 +1402,12 @@ print_statistics(const char *name, const iter_t *iter) int main(int argc, const char *argv[]) { - iter_t iter; - const char *fname = NULL; - hid_t fid; + iter_t iter; + const char *fname = NULL; + hid_t fid; hid_t fcpl; struct handler_t *hand = NULL; - H5F_info_t finfo; + H5F_info_t finfo; int i; h5tools_setprogname(PROGRAMNAME); @@ -1403,12 +1438,12 @@ main(int argc, const char *argv[]) /* Get storge info for SOHM's btree/list/heap and superblock extension */ if(H5Fget_info(fid, &finfo) < 0) - warn_msg("Unable to retrieve SOHM info\n"); + warn_msg("Unable to retrieve SOHM info\n"); else { - iter.super_ext_size = finfo.super_ext_size; - iter.SM_hdr_storage_size = finfo.sohm.hdr_size; - iter.SM_index_storage_size = finfo.sohm.msgs_info.index_size; - iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size; + iter.super_ext_size = finfo.super_ext_size; + iter.SM_hdr_storage_size = finfo.sohm.hdr_size; + iter.SM_index_storage_size = finfo.sohm.msgs_info.index_size; + iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size; } /* end else */ if((fcpl = H5Fget_create_plist(fid)) < 0) @@ -1424,17 +1459,17 @@ main(int argc, const char *argv[]) u = 0; while(hand[u].obj) { if (h5trav_visit(fid, hand[u].obj, TRUE, TRUE, obj_stats, lnk_stats, &iter) < 0) - warn_msg("Unable to traverse object \"%s\"\n", hand[u].obj); - else - print_statistics(hand[u].obj, &iter); + warn_msg("Unable to traverse object \"%s\"\n", hand[u].obj); + else + print_statistics(hand[u].obj, &iter); u++; } /* end while */ } /* end if */ else { if (h5trav_visit(fid, "/", TRUE, TRUE, obj_stats, lnk_stats, &iter) < 0) - warn_msg("Unable to traverse objects/links in file \"%s\"\n", fname); - else - print_statistics("/", &iter); + warn_msg("Unable to traverse objects/links in file \"%s\"\n", fname); + else + print_statistics("/", &iter); } /* end else */ done: @@ -1448,6 +1483,9 @@ done: free(hand); hand = NULL; + /* Free iter structure */ + iter_free(&iter); + if(H5Fclose(fid) < 0) { error_msg("unable to close file \"%s\"\n", fname); h5tools_setstatus(EXIT_FAILURE); diff --git a/tools/h5stat/testh5stat.sh.in b/tools/h5stat/testh5stat.sh.in index 96673ef..0481f3f 100644 --- a/tools/h5stat/testh5stat.sh.in +++ b/tools/h5stat/testh5stat.sh.in @@ -125,6 +125,7 @@ TOOLTEST h5stat_filters-g.ddl -g h5stat_filters.h5 TOOLTEST h5stat_filters-dT.ddl -dT h5stat_filters.h5 TOOLTEST h5stat_filters-UD.ddl -D h5stat_filters.h5 TOOLTEST h5stat_filters-UT.ddl -T h5stat_filters.h5 +# # h5stat_tsohm.h5 is a copy of ../../../test/tsohm.h5 generated by tsohm.c # as of release 1.8.7-snap0 (on a 64-bit machine) TOOLTEST h5stat_tsohm.ddl h5stat_tsohm.h5 |