diff options
Diffstat (limited to 'tools/h5toh4.c')
| -rw-r--r-- | tools/h5toh4.c | 2592 |
1 files changed, 0 insertions, 2592 deletions
diff --git a/tools/h5toh4.c b/tools/h5toh4.c deleted file mode 100644 index 30b381c..0000000 --- a/tools/h5toh4.c +++ /dev/null @@ -1,2592 +0,0 @@ -/****************************************************************************** - - Description: This file contains routines to translate H5 files to H4 files. - - Author: Paul Harten for the University of Illinois, NCSA - - Creation Date: 04 October 1998 - - History: - - -*****************************************************************************/ - -#include "h5toh4.h" -#include <errno.h> -#include <string.h> -#include <fcntl.h> -#include <h5tools.h> - - -#ifdef WIN32 -typedef unsigned int mode_t; -#endif - -#ifndef S_ISDIR -#define S_ISDIR(mode) (((mode)&0xF000) == S_IFDIR) -#endif -extern void PrintOptions_h5toh4(void); -extern char *BuildFilename(char *h5_filename, char *h4_extension); -extern int test_file(char *filename, int oflag, mode_t mode); -extern int test_dir(char *); -extern int h5toh4(char *, char *); - -extern herr_t convert_group(hid_t, char *, op_data_t *); -extern herr_t convert_dataset(hid_t, char *, op_data_t *); -extern herr_t convert_all(hid_t, char *, op_data_t *); -extern herr_t convert_attr(hid_t, char *, op_data_t *); -extern herr_t convert_shared_dataset(hid_t, int, op_data_t *); -extern herr_t convert_shared_group(hid_t, int, op_data_t *); -extern herr_t convert_dataset_string(hid_t, char *, op_data_t *); -extern int32 h5type_to_h4type(hid_t); -extern hid_t h4type_to_memtype(int32); - -extern void free_table(table_t **temp); -extern void dump_tables(char* name, table_t* table); -extern int get_table_idx(table_t*, unsigned long *); -extern int get_tableflag(table_t*, int); -extern int set_tableflag(table_t*, int); -extern char* get_objectname(table_t*, int); - -typedef herr_t (*H5G_operator_t)(hid_t, const char*, void*); - -static int prefix_len = 1024; -static char *prefix; -static table_t *group_table, *dset_table, *type_table; - -static herr_t h5atomic_type_to_h4type(const hid_t h5type, hid_t* h5memtype, size_t* h5memsize, int32* h4type); - - -/***************************************************************************** - - Routine: main() - - Description: This routine check out arguments sent, makes sure everything is - ok, chooses between the acceptable argument formats and then - calls h5toh4(). - - Input: arg - the number of arguments from the call + 1; - argv - a pointer to an array of strings which are the arguments. - This includes the routine name as the first string. - - Output: function return - error status - -*****************************************************************************/ - -int -main(int argc, char *argv[]) -{ - char *h5_filename=NULL; - char *h4_filename=NULL; - char *h4_extension; - int status = 0; - int status2 = 0; - - - argc--; - argv++; - - if (argc == 0) { - fprintf(stderr,"\nError: Invalid Arguments\n"); - PrintOptions_h5toh4(); - return -1; - } - - /* take care -h (help) option first */ - { int i; - for (i=0; i < argc; i++) - if ( HDstrcmp(argv[i],"-h") == 0 ) { - PrintOptions_h5toh4(); - return 0; - } - } - - /*fargv = argv; */ - - /* Change -m with 1 filename to as 1 filename case */ - if (argc == 2 && HDstrcmp(argv[0],"-m") == 0) { - argv++; - argc--; - } - - switch(argc) { - - case 0: - - PrintOptions_h5toh4(); - break; - - case 1: /* h5toh4 file1 */ - h5_filename = argv[0]; - - if (HDstrcmp(h5_filename,"-m") == 0) { - fprintf(stderr,"\nError: Invalid Arguments\n"); - PrintOptions_h5toh4(); - status = -1; - break; - } -#ifndef WIN32 - if (test_file(h5_filename,O_EXCL,(mode_t)(S_IRUSR|S_IRGRP|S_IROTH)) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */ - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } - if (test_dir(h5_filename) != 0 ) { - fprintf(stderr,"%s: Is a directory\n",h5_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } -#endif - h4_extension = HDstrdup("hdf"); - - h4_filename = BuildFilename(h5_filename,h4_extension); - if (h4_filename == NULL) { - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } -#ifndef WIN32 - if (test_file(h4_filename,O_CREAT|O_EXCL,(mode_t)(S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH)) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */ - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } -#endif - status = h5toh4(h5_filename, h4_filename); - if ( status != 0 ) { - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - } - if (h4_filename != NULL) { - HDfree(h4_filename); - } - - break; - - case 2: /* h5toh4 file_in file_out */ - h5_filename = argv[0]; - h4_filename = argv[1]; - - if (HDstrcmp(h4_filename,"-m") == 0) { - fprintf(stderr,"\nError: Invalid Arguments\n"); - PrintOptions_h5toh4(); - status = -1; - break; - } -#ifndef WIN32 - if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */ - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } - if (test_dir(h5_filename) != 0 ) { - fprintf(stderr,"%s: Is a directory\n",h5_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } - if (test_file(h4_filename,O_CREAT|O_RDWR,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */ - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } - if (test_dir(h4_filename) != 0 ) { - fprintf(stderr,"%s: Is a directory\n",h4_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status = -1; - break; - } -#endif - status = h5toh4(h5_filename, h4_filename); - if ( status != 0 ) { - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - } - break; - - default: /* h5toh4 -m file1 file2 file3 ... */ - if (HDstrcmp(argv[0],"-m") != 0) { - fprintf(stderr,"\nError: Invalid Arguments\n"); - PrintOptions_h5toh4(); - status = -1; - break; - } - argv++; - argc--; - - while ( argc > 0 ) { - h5_filename = argv[0]; - argv++; - argc--; - - if (HDstrcmp(h5_filename,"-m") == 0) { - fprintf(stderr,"\nError: Invalid Arguments\n"); - PrintOptions_h5toh4(); - status2 = -1; - break; - } -#ifndef WIN32 - if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */ - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status2 = -1; - continue; - } - if (test_dir(h5_filename) != 0 ) { - fprintf(stderr,"%s: Is a directory\n",h5_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status2 = -1; - continue; - } -#endif - h4_extension = HDstrdup("hdf"); - - h4_filename = BuildFilename(h5_filename,h4_extension); - if (h4_filename == NULL) { - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status2 = -1; - continue; - } -#ifndef WIN32 - if (test_file(h4_filename,O_CREAT|O_EXCL,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */ - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status2 = -1; - continue; - } -#endif - status = h5toh4(h5_filename, h4_filename); - if ( status != 0 ) { - fprintf(stderr,"Error: Problem with %s\n",h5_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); - status2 = status; - } - if (h4_filename != NULL) { - HDfree(h4_filename); - } - - } - status = status2; - break; - } - - return status; - -} - - -/***************************************************************************** - - Routine: PrintOptions_h5toh4() - - Description: This routine prints the acceptable argument formats out to stderr. - - Input: None - - Output: output to stderr - -*****************************************************************************/ - -void PrintOptions_h5toh4(void) -{ - fprintf(stderr,"\nh5toh4 -h (gives this print-out)\n"); - fprintf(stderr,"h5toh4 file.h5 file.hdf\n"); - fprintf(stderr,"h5toh4 file.h5\n"); - fprintf(stderr,"h5toh4 -m file1.h5 file2.h5 ...\n\n"); -} - - -/***************************************************************************** - - Routine: h5toh4() - - Description: This routine translates information from a HDF5 file into a - HDF4 file. - - Input: h5_filename - filename of HDF5 file, - h4_filename - filename of HDF4 file - - Output: function return - error status - -*****************************************************************************/ - -int h5toh4(char *h5_filename, char *h4_filename) -{ - - hid_t fid, gid; - hid_t plist=H5P_DEFAULT; - int status = 0; - int32 hfile_id; - int32 sd_id; - op_data_t op_data; - void *edata; - hid_t (*func)(void*); - - - find_objs_t *info = malloc(sizeof(find_objs_t)); - - - - /* open hdf5 file */ - if ((fid = H5Fopen (h5_filename, H5F_ACC_RDONLY, plist)) <= 0) { - fprintf(stderr,"Error: Unable to open file %s\n",h5_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - return (fid); - } - - /* open root group */ - if ((gid = H5Gopen (fid, "/")) <= 0 ) { - fprintf(stderr,"Error: Unable to open root group\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - return (gid); - } else { - - /* open hdf4 file */ - if ((hfile_id = Hopen(h4_filename, DFACC_CREATE, 0)) <= 0) { - fprintf(stderr,"Error: Unable to open file %s\n", h4_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - return (hfile_id); - } else { - - if ((sd_id = SDstart(h4_filename, DFACC_RDWR)) <= 0) { - fprintf(stderr,"Error: Unable to open file %s, using SDstart\n", h4_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - return (sd_id); - } else { - - /* Initialize Vgroup interface */ - if ((status = Vstart(hfile_id)) != SUCCEED) { - fprintf(stderr,"Error: Unable to initialize Vgroup interface\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - status = FAIL; - } - - /* allocate and initialize internal data structure */ - init_table(&group_table); - init_table(&type_table); - init_table(&dset_table); - init_prefix(&prefix, prefix_len); - - /* init the find_objs_t*/ - info->threshold = 0; - info->prefix_len = prefix_len; - info->prefix = prefix; - info->group_table = group_table; - info->type_table = type_table; - info->dset_table = dset_table; - info->status = status; - - - - /* Disable error reporting */ - H5Eget_auto (&func, &edata); - H5Eset_auto (NULL, NULL); - - /* find all objects one time */ - if ((status = H5Giterate(fid, "/", NULL, (H5G_operator_t)find_objs, (void*)info)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to iterate over all of the groups\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - } - - /* Enable error reporting */ - H5Eset_auto (func, edata); - -#ifdef H5DUMP_DEBUG - dump_tables(); -#endif - - if (status != SUCCEED) { - fprintf(stderr,"Error: internal error! \n"); - goto done; - } - - op_data.hfile_id = hfile_id; - op_data.sd_id = sd_id; - op_data.vgroup_id = 0; - - /* start at root group */ - if (( status = convert_group (gid, HDstrdup("/"), &op_data)) != SUCCEED) { - fprintf(stderr,"Error: convert_group did not work for %s\n","/"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - status = FAIL; - } - - /* Terminate access to Vgroup interface */ - if ((status = Vend(hfile_id)) != SUCCEED) { - fprintf(stderr,"Error: Unable to terminate Vgroup interface\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - status = FAIL; - } - } - - /* close hdf4 SDS */ - if ((status = SDend(sd_id)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close file %s, from SDstart\n", h4_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - status = FAIL; - } - - } - - /* close hdf4 file */ - if ((status = Hclose(hfile_id)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close file %s\n", h4_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - status = FAIL; - } - - } - - if ((status = H5Gclose (gid)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close root group\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - status = FAIL; - } - - if ((status = H5Fclose (fid)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close file %s\n", h5_filename); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); - status = FAIL; - } - -done: - free_table(&group_table); - free_table(&dset_table); - free_table(&type_table); - - return status; - -} - -/*------------------------------------------------------------------------- - * Function: convert_group - * - * Purpose: Dump everything within the specified group - * - * Return: status - * - * Programmer: Paul Harten - * - * Modifications: - * - *-----------------------------------------------------------------------*/ -herr_t -convert_group (hid_t gid, char *name, op_data_t *op_data) { -H5G_stat_t statbuf; - - int32 hfile_id; - int32 vgroup_id; - int32 obj_idx; - int32 status; - int idx, flag; - - hfile_id = op_data->hfile_id; - - if ((vgroup_id = Vattach(hfile_id, -1, "w")) <= 0 ) { - fprintf(stderr,"Error: Unable to create new vgroup\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(vgroup_id); - } - - if ((status = Vsetname(vgroup_id, name)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to set name on new vgroup\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - if ((status = Vsetclass(vgroup_id, "HDF5")) != SUCCEED ) { - fprintf(stderr,"Error: Unable to set class on new vgroup\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - if (op_data->vgroup_id == 0) { - obj_idx = -1; /* Indexes assigned below start from 0 */ - } else { - if ((obj_idx = Vinsert(op_data->vgroup_id, vgroup_id)) < 0) { - fprintf(stderr,"Error: Index %d of the new vgroup is illegal\n",(int)obj_idx); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(obj_idx); - } - } - op_data->vgroup_id = vgroup_id; - op_data->sds_id = 0; - op_data->vdata_id = 0; - op_data->obj_idx = obj_idx; - - - /* hard link */ - if ((status = H5Gget_objinfo(gid, ".", TRUE, &statbuf)) != SUCCEED ) { - fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return (status); - } - - if (HDstrcmp(name,"/") == 0) { /* this is the root group, just iterate */ - - if ((status = H5Aiterate(gid, NULL, (H5A_operator_t)convert_attr, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to iterate over all of the attributes\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - if ((status = H5Giterate(gid, ".", NULL, (H5G_operator_t)convert_all, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to iterate over all of the groups\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - } else { - - if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) { - - fprintf(stderr,"Error: object not found, %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - status = FAIL; - - } else if((flag = get_tableflag(group_table,idx)) < 0 ) { - - fprintf(stderr,"Error: get_tableflag() should never return < 0\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - status = FAIL; - - } else if(flag == TRUE ) { /* this has already been converted, don't convert the attributes again */ - - if ((status = H5Giterate(gid, ".", NULL, (H5G_operator_t)convert_all, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to iterate over all of the groups\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - } else { /* flag == FALSE */ - - /* this is now being converted */ - if ((status = set_tableflag(group_table,idx)) < 0 ) { - fprintf(stderr,"Error: set_tableflag should never return < 0\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - if ((status = H5Aiterate(gid, NULL, (H5A_operator_t)convert_attr, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to iterate over all of the attributes\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - if ((status = H5Giterate(gid, ".", NULL, (H5G_operator_t)convert_all, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to iterate over all of the groups\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - return(status); - } - - } - - } - - - if ((status = Vdetach(vgroup_id)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to detach the new Vgroup\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); - status = FAIL; - } - - return status; - -} - - -/*------------------------------------------------------------------------- - * Function: convert_dataset - * - * Purpose: Convert the specified data set - * - * Return: status - * - * Programmer: Paul Harten - * - * Modifications: - * - *-----------------------------------------------------------------------*/ -herr_t -convert_dataset (hid_t did, char *name, op_data_t *op_data) { -hid_t type, space, class, mem_type, type2; -/* H5G_stat_t statbuf; */ -size_t typesize; -int i, idx; -int32 dim_sizes[32], start[32], edges[32]; -int ndims; -int ndimf; -hsize_t dims[32], maxdims[32]; -hsize_t dimf[4]; -int permf[4]; -int32 hfile_id; -int32 sd_id; -int32 sds_id; -int32 vdata_id; -int32 vgroup_id; -int32 n_values; -int32 status; -int32 h4_type; -int32 recsize; -int32 n_records, num_of_recs, record_pos; -intn nmembers; -char *buffer=NULL; /* read/write buffer*/ -char fieldname_list[4096] = "\0"; -char *fieldname=NULL; -hid_t fieldtype; -int32 order; -off_t offset; -off_t offset_array[512]; -hid_t h4type_array[512], memtype_array[512]; -int32 order_array[512]; - - - /* hard link */ -/* - if ((status = H5Gget_objinfo(did, ".", TRUE, &statbuf)) != SUCCEED ) { - fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return (status); - } -*/ - - if ((type = H5Dget_type(did)) <= 0) { - fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((space = H5Dget_space(did)) <= 0) { - fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) { - fprintf(stderr, "Error: H5Sget_simple_extent_npoints() returned inappropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((ndims = H5Sget_simple_extent_dims(space,dims,maxdims)) < 0 ) { - fprintf(stderr, "Error: Problems getting ndims, dims, and maxdims of dataset\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = ndims; - return status; - } - - if ((class = H5Tget_class(type)) < 0 ) { - fprintf(stderr,"Error: problem with getting class\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = class; - return status; - } - - switch (class) { - case H5T_INTEGER: - case H5T_FLOAT: - sd_id = op_data->sd_id; -#define NEWWAY -#ifdef NEWWAY - if (FAIL==h5atomic_type_to_h4type(type, &mem_type, &typesize, &h4_type)){ - fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } -#else - if ((h4_type = h5type_to_h4type(type)) == FAIL ) { - fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } - if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) { - fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - return status; - } - if ((typesize = H5Tget_size(mem_type)) <= 0) { - fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } -#endif - if ((buffer = HDmalloc(n_values*typesize)) == NULL) { - fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } - if ((status = H5Dread(did, mem_type, space, space, H5P_DEFAULT, buffer)) != SUCCEED) { - fprintf(stderr, "Error: Problems with H5Dread\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } - for (i=0;i<ndims;i++) { - if (maxdims[i] == H5S_UNLIMITED) { - if ( i == 0 ) { - dim_sizes[0] = 0; /* this is how HDF4 communicates unlimited dimension */ - } else { - dim_sizes[i] = (int32)dims[i]; - } - } else { - dim_sizes[i] = (int32)maxdims[i]; - } - start[i] = 0; - edges[i] = (int32)dims[i]; - } - if ((sds_id = SDcreate(sd_id, name, h4_type, ndims, dim_sizes)) <= 0 ) { - fprintf(stderr, "Error: Unable to create SDS %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } - op_data->sds_id = sds_id; - if ((status = SDwritedata(sds_id, start, NULL, edges, buffer)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to write SDS %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - } - if ((status = H5Aiterate(did, NULL, (H5A_operator_t)convert_attr, op_data)) < 0 ) { - fprintf(stderr,"Error: iterate over attributes\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - } - if ((status = SDendaccess(sds_id)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to end access to SDS %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - } - break; - case H5T_TIME: - fprintf(stderr,"Warning: H5T_TIME not yet implemented.\n"); - break; - case H5T_STRING: - if (ndims==1) { - convert_dataset_string(did, name, op_data); - } else { - fprintf(stderr,"Warning: HDF5 datasets of H5T_STRING type with ndims > 1 are not converted.\n"); - } - break; - case H5T_BITFIELD: - fprintf(stderr,"Warning: H5T_BITFIELD not yet implemented.\n"); - break; - case H5T_OPAQUE: - fprintf(stderr,"Warning: H5T_OPAQUE not yet implemented.\n"); - break; - case H5T_ARRAY: - fprintf(stderr,"Warning: H5T_OPAQUE not yet implemented.\n"); - break; - case H5T_COMPOUND: - if (ndims==1) { - if ((nmembers = H5Tget_nmembers(type)) <= 0 ) { - fprintf(stderr, "Error: Unable to get information about compound datatype %d\n",nmembers); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - - offset = 0; - for (idx=0;idx<nmembers;idx++) { - if ((fieldtype = H5Tget_member_type(type, idx)) < 0 ) { - fprintf(stderr,"Error: H5 datasets of H5T_COMPOUND type with fieldtype %d, idx %d.\n",fieldtype,idx); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - /* Special case for array fields */ - if(H5Tget_class(fieldtype)==H5T_ARRAY) { - hid_t arr_base_type; - - /* Get the number of dimensions */ - if ((ndimf = H5Tget_array_ndims(fieldtype)) < 0 || ndimf > H5S_MAX_RANK ) { - fprintf(stderr, "Error: rank of members of compound type should not be %d\n",ndimf); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - /* Get the dimensions and dimension permutations */ - if (H5Tget_array_dims(fieldtype,dimf,permf) < 0) { - fprintf(stderr, "Error: cannot retrieve dimensions for array\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - /* Get the 'real' field type */ - if ((arr_base_type=H5Tget_super(fieldtype)) < 0) { - fprintf(stderr, "Error: cannot retrieve base type for array\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - if (H5Tclose(fieldtype) < 0 ) { - fprintf(stderr,"Error: closing type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - - /* Assign the array's base type as the field type for future use */ - fieldtype=arr_base_type; - } /* end if */ - else - ndimf=0; -#ifdef NEWWAY - if (FAIL==h5atomic_type_to_h4type(fieldtype, &mem_type, &typesize, &h4_type)){ - fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } -#else - if ((h4_type = h5type_to_h4type(fieldtype)) < 0 ) { - fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) { - fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - if ((typesize = H5Tget_size(mem_type)) <= 0) { - fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } -#endif - order = 1; - if (ndimf > 0) { - order *= dimf[permf[0]]; - if (ndimf > 1) { - order *= dimf[permf[1]]; - if (ndimf > 2) { - order *= dimf[permf[2]]; - if (ndimf > 3) { - order *= dimf[permf[3]]; - } - } - } - } - h4type_array[idx] = h4_type; /* used for VSfdefine */ - memtype_array[idx] = mem_type; /* used during the build of the memory compound type */ - offset_array[idx] = offset; /* used during the build of the memory compound type */ - order_array[idx] = order; /* used for VSfdefine */ - - offset += order * typesize; /* calculating packed size of memory compound type */ - } - hfile_id = op_data->hfile_id; - vgroup_id = op_data->vgroup_id; - if ((vdata_id = VSattach(hfile_id, -1, "w")) <= 0 ) { - fprintf(stderr, "Error: Unable to create vdata %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } -/* - * This step is done during the convert_shared_dataset() call instead of here. - * - if ((idx = Vinsert(vgroup_id, vdata_id)) < 0 ) { - fprintf(stderr, "Error: Unable to insert vdata %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } -*/ - op_data->vdata_id = vdata_id; - if ((status = VSsetname(vdata_id, name)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set vdata name %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - if ((status = VSsetclass(vdata_id, "HDF5")) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set class on vdata %s\n", name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - if ((type2 = H5Tcreate(H5T_COMPOUND, (size_t)offset)) <= 0 ) { - fprintf(stderr, "Error: unable to execute H5Tcreate()\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - for (idx=0;idx<nmembers;idx++) { - /* Special case for array fields */ - if(H5Tget_member_class(type,idx)==H5T_ARRAY) { - hid_t arr_type; - - if ((arr_type = H5Tget_member_type(type, idx)) < 0 ) { - fprintf(stderr,"Error: H5 datasets of H5T_COMPOUND type with fieldtype %d, idx %d.\n",arr_type,idx); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - /* Get the number of dimensions */ - if ((ndimf = H5Tget_array_ndims(arr_type)) < 0 || ndimf > H5S_MAX_RANK ) { - fprintf(stderr, "Error: rank of members of compound type should not be %d\n",ndimf); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - /* Get the dimensions and dimension permutations */ - if (H5Tget_array_dims(arr_type,dimf,permf) < 0) { - fprintf(stderr, "Error: cannot retrieve dimensions for array\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - if (H5Tclose(arr_type) < 0 ) { - fprintf(stderr,"Error: closing type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - } /* end if */ - else - ndimf=0; - - if ((fieldname = H5Tget_member_name(type, idx)) == NULL ) { - fprintf(stderr, "Error: Unable to get fieldname for compound type %d, idx %d\n", type, idx); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - if ((offset = H5Tget_offset(memtype_array[idx])) < 0 || offset >= 128 ) { - fprintf(stderr, "Error: H5Tget_offset() is returning a bad value %d\n",(int)offset); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - if (ndimf == 0 ) { - if ((status = H5Tinsert(type2,fieldname,offset_array[idx]+offset,memtype_array[idx])) != SUCCEED ) { - fprintf(stderr, "Error: Problems inserting field into compound datatype\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - } else { - hid_t arr_type; - - /* Create the array datatype */ - if ((arr_type = H5Tarray_create(memtype_array[idx], ndimf, dimf, permf)) < 0 ) { - fprintf(stderr,"Error: cannot create array datatype\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - - if ((status = H5Tinsert(type2,fieldname,offset_array[idx]+offset,arr_type)) != SUCCEED ) { - fprintf(stderr, "Error: Problems inserting field into compound datatype\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - - if (H5Tclose(arr_type) < 0 ) { - fprintf(stderr,"Error: closing type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - return FAIL; - } - } - if ((status = VSfdefine(vdata_id, fieldname, h4type_array[idx], order_array[idx])) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set field %d\n", idx); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - strcat(fieldname_list,fieldname); - if (idx<nmembers-1) { - strcat(fieldname_list,", "); - } - - if (fieldname != NULL) { - HDfree(fieldname); - } - } - if ((status = VSsetfields(vdata_id, fieldname_list)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set fieldname list %s\n", name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - if ((status = VSsetinterlace(vdata_id, FULL_INTERLACE)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set FULL_INTERLACE mode, status %d\n", (int)status); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - if ((recsize = H5Tget_size(type2)) <= 0 ) { - fprintf(stderr, "Error: Unable to get record size %d\n", (int)recsize); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } -/* - Since the space is rank 1, n_records does not depend on maxdims. -*/ - n_records = n_values; - if ((buffer = HDmalloc(n_records*recsize)) == NULL) { - fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } - if ((status = H5Dread(did, type2, space, space, H5P_DEFAULT, buffer)) != SUCCEED) { - fprintf(stderr, "Error: Problems with H5Dread\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } - if ((status = H5Tclose(type2)) < 0 ) { - fprintf(stderr,"Error: closing type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } - - if ((record_pos = VSseek(vdata_id, 0)) != 0 ) { - fprintf(stderr, "Error: Could not seek the beginning of the Vdata, %d\n", (int)record_pos); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = record_pos; - break; - } - if ((num_of_recs = VSwrite(vdata_id, (void *)buffer, n_records, FULL_INTERLACE)) != n_records ) { - fprintf(stderr, "Error: Only able to write %d of %d records\n", (int)num_of_recs, (int)n_records); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = num_of_recs; - break; - } - - /* there are only vdata attributes, no field attributes */ - if ((status = H5Aiterate(did, NULL, (H5A_operator_t)convert_attr, op_data)) < 0 ) { - fprintf(stderr,"Error: iterate over attributes\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - if ((status = VSdetach(vdata_id)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to detach to vdata %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - break; - } - - } else { - - fprintf(stderr,"Warning: HDF5 datasets of H5T_COMPOUND type with ndims > 1 are not converted.\n"); - - } - break; - default: - fprintf(stderr,"Error: %d class not found\n",class); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - } - - if ((status = H5Tclose(type)) < 0 ) { - fprintf(stderr,"Error: closing type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - } - - if ((status = H5Sclose(space)) < 0 ) { - fprintf(stderr,"Error: closing space\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - } - - if (buffer != NULL) { - HDfree(buffer); - } - - return status; - -} - - -/*------------------------------------------------------------------------- - * Function: convert_attr - * - * Purpose: dump the attribute - * - * Return: Success: SUCCEED - * - * Failure: FAIL - * - * Programmer: Paul Harten - * - * Modifications: - * - *-----------------------------------------------------------------------*/ - -herr_t -convert_attr (hid_t attr, char *attr_name, op_data_t *op_data) -{ -hid_t attr_id, type, space, mem_type, class; -size_t typesize; -char *attr_values=NULL; -int32 status; -int32 h4_type; -int32 sds_id; -int32 vdata_id; -int32 vgroup_id; -int32 n_values; -int32 order; -hid_t fxdlenstr; -size_t lenstr; -H5T_cset_t cset; -H5T_str_t strpad; - - sds_id = op_data->sds_id; - vdata_id = op_data->vdata_id; - vgroup_id = op_data->vgroup_id; - - if ((attr_id = H5Aopen_name (attr, attr_name))>= 0) { - - if ((type = H5Aget_type(attr_id)) <= 0) { - fprintf(stderr, "Error: H5Aget_type() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((class = H5Tget_class(type)) < 0 ) { - fprintf(stderr,"Error: problem with getting class\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = class; - return status; - } - - switch (class) { - case H5T_INTEGER: - case H5T_FLOAT: - - - if ((space = H5Aget_space(attr_id)) <= 0) { - fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) { - fprintf(stderr, "Error: H5sget_simple_extent_npoints() didn't return correct value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - -#ifdef NEWWAY - if (FAIL==h5atomic_type_to_h4type(type, &mem_type, &typesize, &h4_type)){ - fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - break; - } -#else - if ((h4_type = h5type_to_h4type(type)) == FAIL ) { - fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) { - fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((typesize = H5Tget_size(mem_type)) <= 0) { - fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } -#endif - - if ((attr_values = HDmalloc(n_values*typesize)) == NULL) { - fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((status = H5Aread(attr_id, mem_type, attr_values)) != SUCCEED) { - fprintf(stderr, "Error: Problems with H5Aread\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if (sds_id != 0) { - if ((status = SDsetattr(sds_id, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - } else if (vdata_id != 0) { - if ((status = VSsetattr(vdata_id, -1, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - } else { - if ((status = Vsetattr(vgroup_id, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - } - - if ((status = H5Sclose(space)) != SUCCEED ) { - fprintf(stderr, "Error: Problems closing H5Sclose\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - if ((status = H5Aclose(attr_id)) != SUCCEED ) { - fprintf(stderr, "Error: Problems closing H5Aclose\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if (attr_values != NULL) { - HDfree(attr_values); - } - - status = SUCCEED; - break; - - case H5T_TIME: - fprintf(stderr,"Warning: H5T_TIME attribute not yet implemented.\n"); - break; - case H5T_STRING: - - fxdlenstr = type; - h4_type = DFNT_CHAR; - - if ((space = H5Aget_space(attr_id)) <= 0) { - fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) { - fprintf(stderr, "Error: H5sget_simple_extent_npoints() didn't return correct value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((mem_type = H5Tcopy(H5T_C_S1)) == FAIL ) { - fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = mem_type; - return status; - } - if ((lenstr = H5Tget_size(fxdlenstr)) <= 0 ) { - fprintf(stderr, "Error: size of fixed length string type should not be %d\n",(int)lenstr); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - return lenstr; - } - if ((status = H5Tset_size(mem_type,lenstr)) != SUCCEED ) { - fprintf(stderr, "Error: Problem with H5Tset_size()\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - return status; - } - - strpad = H5Tget_strpad(fxdlenstr); - if ((strpad != H5T_STR_NULLTERM) && (strpad != H5T_STR_NULLPAD) && (strpad != H5T_STR_SPACEPAD)) { - fprintf(stderr, "Error: Invalid string padding value, %d\n",(int)strpad); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - return strpad; - } - if ((status = H5Tset_strpad(mem_type, H5T_STR_SPACEPAD)) != SUCCEED ) { - fprintf(stderr, "Error: Problem with H5Tset_strpad()\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - return status; - } - - if ((cset = H5Tget_cset(fxdlenstr)) != H5T_CSET_ASCII ) { - fprintf(stderr, "Error: cset value != %d\n",(int)H5T_CSET_ASCII); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - return cset; - } - if ((status = H5Tset_cset(mem_type,cset)) != SUCCEED ) { - fprintf(stderr, "Error: Problem with H5Tset_cset()\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - return status; - } - - order = n_values * lenstr; - if ((attr_values = HDmalloc(order)) == NULL) { - fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((status = H5Aread(attr_id, mem_type, attr_values)) != SUCCEED) { - fprintf(stderr, "Error: Problems with H5Aread\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if (sds_id != 0) { - if ((status = SDsetattr(sds_id, attr_name, h4_type, order, attr_values)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - } else if (vdata_id != 0) { - if ((status = VSsetattr(vdata_id, -1, attr_name, h4_type, order, attr_values)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - } else { - if ((status = Vsetattr(vgroup_id, attr_name, h4_type, order, attr_values)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - } - - if ((status = H5Sclose(space)) != SUCCEED ) { - fprintf(stderr, "Error: Problems closing H5Sclose\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - if ((status = H5Aclose(attr_id)) != SUCCEED ) { - fprintf(stderr, "Error: Problems closing H5Aclose\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if (attr_values != NULL) { - HDfree(attr_values); - } - - status = SUCCEED; - break; - case H5T_BITFIELD: - fprintf(stderr,"Warning: H5T_BITFIELD attribute not yet implemented.\n"); - break; - case H5T_OPAQUE: - fprintf(stderr,"Warning: H5T_OPAQUE attribute not yet implemented.\n"); - break; - case H5T_COMPOUND: - fprintf(stderr,"Warning: H5T_COMPOUND attribute not implemented.\n"); - break; - default: - fprintf(stderr,"Error: %d class not found\n",class); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - } - - if ((status = H5Tclose(type)) != SUCCEED ) { - fprintf(stderr, "Error: Problems closing H5Tclose\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); - status = FAIL; - return status; - } - - } else { - - status = FAIL; - - } - - return status; - -} - - -/*------------------------------------------------------------------------- - * Function: convert_all - * - * Purpose: Dump everything in the specified object - * - * Return: Success: SUCCEED - * - * Failure: FAIL - * - * Programmer: Paul Harten - * - * Modifications: - * - *-----------------------------------------------------------------------*/ -herr_t -convert_all (hid_t group, char *name, op_data_t *op_data) -{ - hid_t obj; - H5G_stat_t statbuf, statbuf2; - int status; - op_data_t op_data_save; - int32 vgroup_id; - int32 sd_id; - int32 sds_id; - int idx, flag; - void *edata; - hid_t (*func)(void*); - - op_data_save = *op_data; - - vgroup_id = op_data->vgroup_id; - sd_id = op_data->sd_id; - sds_id = op_data->sds_id; - - if ((status = H5Gget_objinfo(group, name, FALSE, &statbuf)) != SUCCEED ) { - fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (status); - } - statbuf2 = statbuf; - - switch (statbuf.type) { - - case H5G_LINK: /* this is a soft link only */ - - - /* Disable error reporting */ - H5Eget_auto (&func, &edata); - H5Eset_auto (NULL, NULL); - - /* test to see if object exists */ - if ((status = H5Gget_objinfo(group, name, TRUE, NULL)) != SUCCEED ) { - fprintf(stderr,"Warning: the object pointed to by the symbolic link \"%s\" does not exist.\n",name); - } - - /* Enable error reporting */ - H5Eset_auto (func, edata); - - if (status != SUCCEED) { - break; - } - - /* follow link for type */ - if ((status = H5Gget_objinfo(group, name, TRUE, &statbuf)) != SUCCEED ) { - fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (status); - } - - if (statbuf.type==H5G_DATASET ) { - - if ((idx = get_table_idx(dset_table, statbuf.objno)) < 0 ) { - - fprintf(stderr,"Error: object not found\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if((flag = get_tableflag(dset_table,idx)) < 0 ) { - - fprintf(stderr,"Error: get_tableflag() should never return < 0\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if(flag == TRUE ) { /* this has already been converted, add as a tag/ref */ - - if ((obj = H5Dopen (group, name)) <= 0 ) { - fprintf(stderr,"Error: Unable to open H5 dataset\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (obj); - } else { - if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to convert to tag/ref\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - } - } - if ((status = H5Dclose(obj)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } else { /* flag == FALSE */ - - if ((obj = H5Dopen (group, name)) <= 0 ) { - fprintf(stderr,"Error: Unable to open H5 dataset\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (obj); - } else { - if (( status = convert_dataset (obj, name, op_data)) != SUCCEED) { - fprintf(stderr,"Error: convert_dataset did not work for %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to convert to tag/ref\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - } - if(( status = set_tableflag(dset_table,idx)) != SUCCEED ) { - fprintf(stderr,"Error: set_tableflag() did not work for %s\n", name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - break; - } - } - if ((status = H5Dclose(obj)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } - - } else if (statbuf.type==H5G_GROUP ) { - - if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) { - - fprintf(stderr,"Error: object not found\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if((flag = get_tableflag(group_table,idx)) < 0 ) { - - fprintf(stderr,"Error: get_tableflag() should never return < 0\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if(flag == TRUE ) { - - if (( status = convert_shared_group (group, idx, op_data)) != SUCCEED) { - fprintf(stderr,"Error: convert_group did not work for %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } else { /* flag == FALSE */ - - if ((obj = H5Gopen (group, name)) <= 0 ) { - fprintf(stderr,"Error: Unable to open group\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (obj); - } else { - if (( status = convert_group (obj, name, op_data)) != SUCCEED) { - fprintf(stderr,"Error: convert_group did not work for %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - } - if ((status = H5Gclose(obj)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close group %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } - - } - - break; - - case H5G_GROUP: - - if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) { - - fprintf(stderr,"Error: object not found\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if((flag = get_tableflag(group_table,idx)) < 0 ) { - - fprintf(stderr,"Error: get_tableflag() should never return < 0\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if(flag == TRUE ) { - - if (( status = convert_shared_group (group, idx, op_data)) != SUCCEED) { - fprintf(stderr,"Error: convert_group did not work for %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } else { /* flag == FALSE */ - - if ((obj = H5Gopen (group, name)) <= 0 ) { - fprintf(stderr,"Error: Unable to open group\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (obj); - } else { - if (( status = convert_group (obj, name, op_data)) != SUCCEED) { - fprintf(stderr,"Error: convert_group did not work for %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - } - if ((status = H5Gclose(obj)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close group %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } - - break; - - case H5G_DATASET: - - if ((idx = get_table_idx(dset_table, statbuf.objno)) < 0 ) { - - fprintf(stderr,"Error: object not found\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if((flag = get_tableflag(dset_table,idx)) < 0 ) { - - fprintf(stderr,"Error: get_tableflag() should never return < 0\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - - } else if(flag == TRUE ) { /* this has already been converted, add as a tag/ref */ - - if ((obj = H5Dopen (group, name)) <= 0 ) { - fprintf(stderr,"Error: Unable to open H5 dataset\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (obj); - } else { - if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to convert to tag/ref\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - } - } - if ((status = H5Dclose(obj)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } else { /* flag == FALSE */ - - if ((obj = H5Dopen (group, name)) <= 0 ) { - fprintf(stderr,"Error: Unable to open H5 dataset\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - return (obj); - } else { - if (( status = convert_dataset (obj, name, op_data)) != SUCCEED) { - fprintf(stderr,"Error: convert_dataset did not work for %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to convert to tag/ref\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - } - if(( status = set_tableflag(dset_table,idx)) != SUCCEED ) { - fprintf(stderr,"Error: set_tableflag() did not work for %s\n", name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - break; - } - } - if ((status = H5Dclose(obj)) != SUCCEED) { - fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); - status = FAIL; - break; - } - - } - - break; - - case H5G_TYPE: - /* object is ignored */ - break; - - default: - fprintf (stderr,"Unknown Object %s\n", name); - status = FAIL; - break; - - } - - *op_data = op_data_save; - - return SUCCEED; - -} - - -/*------------------------------------------------------------------------- - * Function: convert_shared_dataset - * - * Purpose: Handle a shared dataset which has already been converted. - * - * Return: Success: SUCCEED - * - * Failure: FAIL - * - * Programmer: Paul Harten - * - * Modifications: - * - *-----------------------------------------------------------------------*/ -herr_t -convert_shared_dataset(hid_t did, int idx, op_data_t *op_data) -{ - int status=SUCCEED; - int32 vgroup_id; - char *dataset_name=NULL; - char *dataset_name2=NULL; - int32 hfile_id; - int32 sd_id; - int32 sds_id; - int32 sds_ref; - int32 vdata_ref; - int32 sds_index; - int32 numtagref; - hid_t type, space, class; - hsize_t dims[32], maxdims[32]; - int n_values, ndims; - - vgroup_id = op_data->vgroup_id; - - if ((dataset_name = get_objectname(dset_table, idx)) == NULL ) { - fprintf(stderr,"Error: get_objectname() did not work\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (status); - } - - if ((dataset_name2 = strrchr(dataset_name,'/')) == NULL) { /* find last "/" in dataset_name */ - dataset_name2 = dataset_name; /* no "/"s were found */ - } else { - dataset_name2 = dataset_name2 + sizeof(char); /* 1 character past last "/" */ - } - - if ((type = H5Dget_type(did)) <= 0) { - fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((space = H5Dget_space(did)) <= 0) { - fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) { - fprintf(stderr, "Error: H5Sget_simple_extent_npoints() returned inappropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((ndims = H5Sget_simple_extent_dims(space,dims,maxdims)) < 0 ) { - fprintf(stderr, "Error: Problems getting ndims, dims, and maxdims of dataset\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - status = ndims; - return status; - } - - if ((class = H5Tget_class(type)) < 0 ) { - fprintf(stderr,"Error: problem with getting class\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - status = class; - return status; - } - - switch (class) { - case H5T_INTEGER: - case H5T_FLOAT: - sd_id = op_data->sd_id; - if ((sds_index = SDnametoindex(sd_id, dataset_name2)) < 0 ) { - fprintf (stderr,"Error: Problem with SDnametoindex().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (sds_index); - } - if ((sds_id = SDselect(sd_id, sds_index)) < 0 ) { - fprintf (stderr,"Error: Problem with SDselect().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (sds_id); - } - if ((sds_ref = SDidtoref(sds_id)) < 0 ) { - fprintf (stderr,"Error: Problem with SDidtoref().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (sds_ref); - } - if ((numtagref = Vaddtagref(vgroup_id, DFTAG_NDG, sds_ref)) < 0 ) { - fprintf (stderr,"Error: Problem with Vaddtagref().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (numtagref); - } - break; - case H5T_TIME: - fprintf(stderr,"Error: H5T_TIME not yet implemented.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - break; - case H5T_STRING: - hfile_id = op_data->hfile_id; - if (ndims==1) { - if ((vdata_ref = VSfind(hfile_id,dataset_name2)) <= 0 ) { - fprintf (stderr,"Error: Problem with VSfind().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (vdata_ref); - } - if ((numtagref = Vaddtagref(vgroup_id, DFTAG_VH, vdata_ref)) < 0 ) { - fprintf (stderr,"Error: Problem with Vaddtagref().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (numtagref); - } - } - break; - case H5T_BITFIELD: - fprintf(stderr,"Error: H5T_BITFIELD not yet implemented.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - break; - case H5T_OPAQUE: - fprintf(stderr,"Error: H5T_OPAQUE not yet implemented.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - break; - case H5T_COMPOUND: - hfile_id = op_data->hfile_id; - if (ndims==1) { - if ((vdata_ref = VSfind(hfile_id,dataset_name2)) <= 0 ) { - fprintf (stderr,"Error: Problem with VSfind().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (vdata_ref); - } - if ((numtagref = Vaddtagref(vgroup_id, DFTAG_VH, vdata_ref)) < 0 ) { - fprintf (stderr,"Error: Problem with Vaddtagref().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - return (numtagref); - } - } - break; - default: - fprintf(stderr,"Error: %d class not found\n",class); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - status = FAIL; - } - - if ((status = H5Tclose(type)) < 0 ) { - fprintf(stderr,"Error: closing type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); - status = FAIL; - } - - if (dataset_name != NULL) { - HDfree (dataset_name); - } - - return status; - -} - - -/*------------------------------------------------------------------------- - * Function: convert_shared_group - * - * Purpose: Handle a shared group which has already been converted. - * - * Return: status - * - * Programmer: Paul Harten - * - * Modifications: - * - *-----------------------------------------------------------------------*/ -herr_t -convert_shared_group (hid_t group, int idx, op_data_t *op_data) { - - int32 hfile_id; - int32 vgroup_id; - int32 vgroup_ref; - int32 numtagref; - int32 status = SUCCEED; - hid_t group2; - char *group_name=NULL; - char *group_name2=NULL; - char vgroup_name[VGNAMELENMAX]; - - group2 = group; - hfile_id = op_data->hfile_id; - - if ((group_name = get_objectname(group_table, idx)) == NULL ) { - fprintf(stderr,"Error: get_objectname() did not work\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__); - status = FAIL; - return (status); - } - - if ((group_name2 = strrchr(group_name,'/')) == NULL) { /* find last "/" in group_name */ - group_name2 = group_name; /* no "/"s were found */ - } else { - group_name2 = group_name2 + sizeof(char); /* 1 character past last "/" */ - } - - if ((status = Vgetname(op_data->vgroup_id,vgroup_name)) < 0 ) { - fprintf (stderr,"Error: Problem with Vfind().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__); - return (status); - } - - if ((vgroup_ref = Vfind(hfile_id,vgroup_name)) <= 0 ) { - fprintf (stderr,"Error: Problem with Vfind().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__); - return (vgroup_ref); - } - - if ((vgroup_id = Vattach(hfile_id, vgroup_ref, "w")) <= 0 ) { - fprintf(stderr,"Error: Unable to create new vgroup\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__); - return(vgroup_id); - } - - if ((vgroup_ref = Vfind(hfile_id,group_name2)) <= 0 ) { - fprintf (stderr,"Error: Problem with Vfind().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__); - return (vgroup_ref); - } - - if ((numtagref = Vaddtagref(vgroup_id, DFTAG_VG, vgroup_ref)) < 0 ) { - fprintf (stderr,"Error: Problem with Vaddtagref().\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__); - return (numtagref); - } - - if ((status = Vdetach(vgroup_id)) != SUCCEED ) { - fprintf(stderr,"Error: Unable to detach the new Vgroup\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__); - status = FAIL; - } - - if (group_name != NULL) { - HDfree(group_name); - } - - return status; - -} - - -/*------------------------------------------------------------------------- - * Function: convert_dataset_string - * - * Purpose: convert a dataset with string elements. - * - * Return: status - * - * Programmer: Paul Harten - * - * Modifications: - * - *-----------------------------------------------------------------------*/ -herr_t -convert_dataset_string (hid_t did, char *name, op_data_t *op_data) { - - int32 hfile_id; - int32 vgroup_id; - int32 vdata_id; -hid_t fxdlenstr, space, class, mem_type; -const char* fieldname = {"string"}; -const char* fieldname_list = fieldname; -char *buffer; -int32 status; -int32 h4_type; -int32 recsize, n_records, n_values, num_of_recs, record_pos; -size_t lenstr; -H5T_cset_t cset; -H5T_str_t strpad; - - if ((fxdlenstr = H5Dget_type(did)) <= 0) { - fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((class = H5Tget_class(fxdlenstr)) != H5T_STRING ) { - fprintf(stderr,"Error: problem with getting class\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__); - status = class; - return status; - } - - if ((space = H5Dget_space(did)) <= 0) { - fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = FAIL; - return status; - } - - if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) { - fprintf(stderr, "Error: H5Sget_simple_extent_npoints() returned inappropriate value.\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = FAIL; - return status; - } - - h4_type = DFNT_CHAR; - if ((mem_type = H5Tcopy(H5T_C_S1)) == FAIL ) { - fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = mem_type; - return status; - } - if ((lenstr = H5Tget_size(fxdlenstr)) <= 0 ) { - fprintf(stderr, "Error: size of fixed length string type should not be %d\n",(int)lenstr); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return lenstr; - } - if ((status = H5Tset_size(mem_type,lenstr)) != SUCCEED ) { - fprintf(stderr, "Error: Problem with H5Tset_size()\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - - strpad = H5Tget_strpad(fxdlenstr); - if ((strpad != H5T_STR_NULLTERM) && (strpad != H5T_STR_NULLPAD) && (strpad != H5T_STR_SPACEPAD)) { - fprintf(stderr, "Error: Invalid string padding value, %d\n",(int)strpad); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return strpad; - } - if ((status = H5Tset_strpad(mem_type, strpad)) != SUCCEED ) { - fprintf(stderr, "Error: Problem with H5Tset_strpad()\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - - if ((cset = H5Tget_cset(fxdlenstr)) != H5T_CSET_ASCII ) { - fprintf(stderr, "Error: cset value != %d\n",(int)H5T_CSET_ASCII); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return cset; - } - if ((status = H5Tset_cset(mem_type,cset)) != SUCCEED ) { - fprintf(stderr, "Error: Problem with H5Tset_cset()\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - - hfile_id = op_data->hfile_id; - vgroup_id = op_data->vgroup_id; - if ((vdata_id = VSattach(hfile_id, -1, "w")) <= 0 ) { - fprintf(stderr, "Error: Unable to create vdata %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = FAIL; - return status; - } - - op_data->vdata_id = vdata_id; - if ((status = VSsetname(vdata_id, name)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set vdata name %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - if ((status = VSsetclass(vdata_id, "HDF5")) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set class on vdata %s\n", name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - - if ((status = VSfdefine(vdata_id, fieldname, h4_type, lenstr)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to VSfdefine() field\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - - if ((status = VSsetfields(vdata_id, fieldname_list)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set fieldname list %s\n", fieldname_list); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - if ((status = VSsetinterlace(vdata_id, FULL_INTERLACE)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to set FULL_INTERLACE mode, status %d\n", (int)status); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - if ((recsize = H5Tget_size(mem_type)) <= 0 ) { - fprintf(stderr, "Error: Unable to get record size %d\n", (int)recsize); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = recsize; - return status; - } -/* - Since the space is rank 1, n_records does not depend on maxdims. -*/ - n_records = n_values; - if ((buffer = HDmalloc(n_records*recsize)) == NULL) { - fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = FAIL; - return status; - } - if ((status = H5Dread(did, mem_type, space, space, H5P_DEFAULT, buffer)) != SUCCEED) { - fprintf(stderr, "Error: Problems with H5Dread\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - - if ((record_pos = VSseek(vdata_id, 0)) != 0 ) { - fprintf(stderr, "Error: Could not seek the beginning of the Vdata, %d\n", (int)record_pos); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = record_pos; - return status; - } - if ((num_of_recs = VSwrite(vdata_id, (void *)buffer, n_records, FULL_INTERLACE)) != n_records ) { - fprintf(stderr, "Error: Only able to write %d of %d records\n", (int)num_of_recs, (int)n_records); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - status = num_of_recs; - return status; - } - - /* there are only vdata attributes, no field attributes */ - if ((status = H5Aiterate(did, NULL, (H5A_operator_t)convert_attr, op_data)) < 0 ) { - fprintf(stderr,"Error: iterate over attributes\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - if ((status = VSdetach(vdata_id)) != SUCCEED ) { - fprintf(stderr, "Error: Unable to detach to vdata %s.\n",name); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__); - return status; - } - - if (buffer != NULL) { - HDfree(buffer); - } - - return status; - -} - - -/*------------------------------------------------------------------------- - * Function: h5atomic_type_to_h4type - * - * Purpose: Match an H5 atomic type to an appropriate H4 type. - * Assign an appropirate H5 memory type that matches the H4 type. - * Return the H5 memory type, H4 type and sizeof H4 via pointers. - * - * Return: SUCCEED on suceed, FAIL on failure. - * When fail, pointer values of h5memtype, h5memsize and h4_type - * may have changed and are undefined. - * - * Programmer: Albert Cheng, March 2000 - * - * Modifications: - * - *-----------------------------------------------------------------------*/ -static herr_t h5atomic_type_to_h4type(const hid_t h5type, hid_t* h5memtype, size_t* h5memsize, int32* h4type) -{ - H5T_class_t class; - size_t h5typesize, h4typesize; - H5T_sign_t sign; - hid_t mem_datatype = FAIL; - - if ((class = H5Tget_class(h5type)) < 0 ) { - fprintf(stderr,"Error: problem with getting type class\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__); - return FAIL; - } - - switch(class){ - case H5T_INTEGER: - if ((h5typesize = H5Tget_size(h5type)) == 0 ) { - fprintf(stderr,"Error: problem with getting type size\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__); - return FAIL; - } - if ((sign = H5Tget_sign(h5type)) == H5T_SGN_ERROR) { - fprintf(stderr,"Error: problem with getting type sign\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__); - return FAIL; - } - /* deduce the proper HDF4 integer type to use according to the size of the HDF5 type. */ - /* Current HDF4 types can be 8, 16, 32 bits (1, 2, 4 bytes). */ - switch(h5typesize){ - case 1: - *h4type = (sign == H5T_SGN_2 ? DFNT_INT8 : DFNT_UINT8); - h4typesize = sizeof(int8); - if (h4typesize == H5Tget_size(H5T_NATIVE_CHAR)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SCHAR : H5T_NATIVE_UCHAR); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_SHORT)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SHORT : H5T_NATIVE_USHORT); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_INT)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_INT : H5T_NATIVE_UINT); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_LONG)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_LONG : H5T_NATIVE_ULONG); - }else - return(FAIL); - break; - case 2: - *h4type = (sign == H5T_SGN_2 ? DFNT_INT16 : DFNT_UINT16); - h4typesize = sizeof(int16); - if (h4typesize == H5Tget_size(H5T_NATIVE_CHAR)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SCHAR : H5T_NATIVE_UCHAR); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_SHORT)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SHORT : H5T_NATIVE_USHORT); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_INT)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_INT : H5T_NATIVE_UINT); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_LONG)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_LONG : H5T_NATIVE_ULONG); - }else - return(FAIL); - break; - case 4: - *h4type = (sign == H5T_SGN_2 ? DFNT_INT32 : DFNT_UINT32); - h4typesize = sizeof(int32); - if (h4typesize == H5Tget_size(H5T_NATIVE_CHAR)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SCHAR : H5T_NATIVE_UCHAR); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_SHORT)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SHORT : H5T_NATIVE_USHORT); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_INT)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_INT : H5T_NATIVE_UINT); - }else if (h4typesize == H5Tget_size(H5T_NATIVE_LONG)){ - mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_LONG : H5T_NATIVE_ULONG); - }else - return(FAIL); - break; - default: - fprintf(stderr,"Error: unmatchable integer type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__); - return FAIL; - } - break; - /* end of case H5T_INTEGER */ - - case H5T_FLOAT: - if ((h5typesize = H5Tget_size(h5type)) == 0 ) { - fprintf(stderr,"Error: problem with getting type size\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__); - return FAIL; - } - /* deduce the proper HDF4 floating point type to use according to the size of the HDF5 type. */ - /* Current HDF4 types can be 32 or 64 bits (4 or 8 bytes). */ - switch(h5typesize){ - case 4: - *h4type = DFNT_FLOAT32; - h4typesize = sizeof(float32); - if (h4typesize == H5Tget_size(H5T_NATIVE_FLOAT)){ - mem_datatype = H5T_NATIVE_FLOAT; - }else if (h4typesize == H5Tget_size(H5T_NATIVE_DOUBLE)){ - mem_datatype = H5T_NATIVE_DOUBLE; - }else - return(FAIL); - break; - case 8: - *h4type = DFNT_FLOAT64; - h4typesize = sizeof(float64); - if (h4typesize == H5Tget_size(H5T_NATIVE_FLOAT)){ - mem_datatype = H5T_NATIVE_FLOAT; - }else if (h4typesize == H5Tget_size(H5T_NATIVE_DOUBLE)){ - mem_datatype = H5T_NATIVE_DOUBLE; - }else - return(FAIL); - break; - default: - fprintf(stderr,"Error: unmatchable H5 float type\n"); - DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__); - return FAIL; - } - break; - /* end of case H5T_FLOAT */ - - default: - return FAIL; - } - - *h5memsize = h4typesize; - *h5memtype = mem_datatype; - return(SUCCEED); -} -#ifndef NEWWAY -/***************************************************************************** - - Routine: h5type_to_h4type(h5type) - - Description: Translate h5 datatype into h4 datatype - - Input: h5 datatype - - Output: function return, h4 datatype - -*****************************************************************************/ - -int32 h5type_to_h4type(hid_t h5_datatype) -{ - int32 h4_datatype; - - if (H5Tequal(h5_datatype,H5T_STD_I8BE)) { - h4_datatype = DFNT_INT8; - } else if (H5Tequal(h5_datatype,H5T_STD_I16BE)) { - h4_datatype = DFNT_INT16; - } else if (H5Tequal(h5_datatype,H5T_STD_I32BE)) { - h4_datatype = DFNT_INT32; -/* - * This is not supported by HDF4 - * - } else if (H5Tequal(h5_datatype,H5T_STD_I64BE)) { - h4_datatype = DFNT_INT64; -*/ - } else if (H5Tequal(h5_datatype,H5T_STD_U8BE)) { - h4_datatype = DFNT_UINT8; - } else if (H5Tequal(h5_datatype,H5T_STD_U16BE)) { - h4_datatype = DFNT_UINT16; - } else if (H5Tequal(h5_datatype,H5T_STD_U32BE)) { - h4_datatype = DFNT_UINT32; - } else if (H5Tequal(h5_datatype,H5T_STD_U64BE)) { - h4_datatype = DFNT_UINT64; - } else if (H5Tequal(h5_datatype,H5T_IEEE_F32BE)) { - h4_datatype = DFNT_FLOAT32; - } else if (H5Tequal(h5_datatype,H5T_IEEE_F64BE)) { - h4_datatype = DFNT_FLOAT64; - } else if (H5Tequal(h5_datatype,H5T_STD_I8LE)) { - h4_datatype = DFNT_INT8; - } else if (H5Tequal(h5_datatype,H5T_STD_I16LE)) { - h4_datatype = DFNT_INT16; - } else if (H5Tequal(h5_datatype,H5T_STD_I32LE)) { - h4_datatype = DFNT_INT32; -/* - * This is not supported by HDF4 - * - } else if (H5Tequal(h5_datatype,H5T_STD_I64LE)) { - h4_datatype = DFNT_INT64; -*/ - } else if (H5Tequal(h5_datatype,H5T_STD_U8LE)) { - h4_datatype = DFNT_UINT8; - } else if (H5Tequal(h5_datatype,H5T_STD_U16LE)) { - h4_datatype = DFNT_UINT16; - } else if (H5Tequal(h5_datatype,H5T_STD_U32LE)) { - h4_datatype = DFNT_UINT32; - } else if (H5Tequal(h5_datatype,H5T_STD_U64LE)) { - h4_datatype = DFNT_UINT64; - } else if (H5Tequal(h5_datatype,H5T_IEEE_F32LE)) { - h4_datatype = DFNT_FLOAT32; - } else if (H5Tequal(h5_datatype,H5T_IEEE_F64LE)) { - h4_datatype = DFNT_FLOAT64; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_SCHAR)) { - h4_datatype = DFNT_INT8; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_UCHAR)) { - h4_datatype = DFNT_UINT8; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_SHORT)) { - h4_datatype = DFNT_INT16; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_USHORT)) { - h4_datatype = DFNT_UINT16; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_INT)) { - h4_datatype = DFNT_INT32; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_UINT)) { - h4_datatype = DFNT_UINT32; -/* - * This is not supported by HDF4 - * - } else if (H5Tequal(h5_datatype,H5T_NATIVE_LONG)) { - h4_datatype = DFNT_INT64; -*/ - } else if (H5Tequal(h5_datatype,H5T_NATIVE_ULONG)) { - h4_datatype = DFNT_UINT64; -/* - * This is not supported by HDF4 - * - } else if (H5Tequal(h5_datatype,H5T_NATIVE_LLONG)) { - h4_datatype = DFNT_INT128; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_ULLONG)) { - h4_datatype = DFNT_UINT128; -*/ - } else if (H5Tequal(h5_datatype,H5T_NATIVE_FLOAT)) { - h4_datatype = DFNT_FLOAT32; - } else if (H5Tequal(h5_datatype,H5T_NATIVE_DOUBLE)) { - h4_datatype = DFNT_FLOAT64; -/* - * This is not supported by HDF4 - * - } else if (H5Tequal(h5_datatype,H5T_NATIVE_LDOUBLE)) { - h4_datatype = DFNT_FLOAT128; -*/ - } else { - h4_datatype = FAIL; - } - - return h4_datatype; - -} - - -/***************************************************************************** - - Routine: h4type_to_memtype(h4type) - - Description: Translate h4 datatype into mem datatype - - Input: h4 datatype - - Output: function return, mem datatype - -*****************************************************************************/ - -hid_t h4type_to_memtype(int32 h4_datatype) -{ - hid_t mem_datatype; - - switch (h4_datatype) { - case DFNT_INT8: - case DFNT_NINT8: - case DFNT_LINT8: - mem_datatype = H5T_NATIVE_SCHAR; break; - case DFNT_UINT8: - case DFNT_NUINT8: - case DFNT_LUINT8: - mem_datatype = H5T_NATIVE_UCHAR; break; - case DFNT_INT16: - case DFNT_NINT16: - case DFNT_LINT16: - mem_datatype = H5T_NATIVE_SHORT; break; - case DFNT_UINT16: - case DFNT_NUINT16: - case DFNT_LUINT16: - mem_datatype = H5T_NATIVE_USHORT; break; - case DFNT_INT32: - case DFNT_NINT32: - case DFNT_LINT32: - mem_datatype = H5T_NATIVE_INT; break; - case DFNT_UINT32: - case DFNT_NUINT32: - case DFNT_LUINT32: - mem_datatype = H5T_NATIVE_UINT; break; - case DFNT_INT64: - case DFNT_NINT64: - case DFNT_LINT64: - mem_datatype = H5T_NATIVE_LONG; break; - case DFNT_UINT64: - case DFNT_NUINT64: - case DFNT_LUINT64: - mem_datatype = H5T_NATIVE_ULONG; break; - case DFNT_INT128: - case DFNT_NINT128: - case DFNT_LINT128: - mem_datatype = H5T_NATIVE_LLONG; break; - case DFNT_UINT128: - case DFNT_NUINT128: - case DFNT_LUINT128: - mem_datatype = H5T_NATIVE_ULLONG; break; - case DFNT_FLOAT32: - case DFNT_NFLOAT32: - case DFNT_LFLOAT32: - mem_datatype = H5T_NATIVE_FLOAT; break; - case DFNT_FLOAT64: - case DFNT_NFLOAT64: - case DFNT_LFLOAT64: - mem_datatype = H5T_NATIVE_DOUBLE; break; - case DFNT_FLOAT128: - case DFNT_NFLOAT128: - case DFNT_LFLOAT128: - mem_datatype = H5T_NATIVE_LDOUBLE; break; - default: - mem_datatype = FAIL; - } - - return mem_datatype; - -} -#endif - - -/***************************************************************************** - - Routine: test_file - - Description: Test a file for read/write - ability. - - Input: filename - Unix filename - - Output: function return, global variable - errno - -*****************************************************************************/ - -int test_file(char *filename,int oflag,mode_t mode) -{ - int fid; - - errno = 0; - - fid = open(filename, oflag, mode); - if (fid < 0) { - perror(filename); - } - close(fid); - - return errno; - -} - - -/***************************************************************************** - - Routine: test_dir - - Description: Test pathway to determine if it is a directory - - Input: path - pathname given - - Output: function return TRUE/FALSE - -*****************************************************************************/ - -int test_dir(char *path) -{ - - struct stat buf; - struct stat *buf_ptr; - int idir; - - buf_ptr = &buf; - - idir = stat(path, buf_ptr); - if (idir < 0) { - if (errno == 2) { - return 0; - } else { - perror(path); - } - } - - return S_ISDIR(buf_ptr->st_mode); -} - -/***************************************************************************** - - Routine: BuildFilename() - - Description: Build a filename with new extension - - Input: filename - present filename - ext - extension to root of filename - - Output: (filename:r).ext - -*****************************************************************************/ - -char *BuildFilename(char *filename, char *ext) -{ - /* build outgoing filename */ - - char *filename_out; - char *lastper_ptr, *lastdir_ptr; - int root_len; - - lastper_ptr = strrchr(filename,'.'); - lastdir_ptr = strrchr(filename,'/'); - - if ( lastper_ptr <= lastdir_ptr ) { /* no extension */ - root_len = strlen(filename); - } else { /* existing extension */ - root_len = (int)(lastper_ptr - filename); - } - - filename_out = (char *)HDmalloc(root_len + strlen(ext) + 2); - filename_out = strncpy(filename_out, filename, (size_t)root_len); - filename_out[root_len] = '\0'; - filename_out = strcat(filename_out,"."); - filename_out = strcat(filename_out,ext); - - return filename_out; -} - |