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-rw-r--r--tools/h5toh4.c81
1 files changed, 55 insertions, 26 deletions
diff --git a/tools/h5toh4.c b/tools/h5toh4.c
index 2fc78ab..8a41aea 100644
--- a/tools/h5toh4.c
+++ b/tools/h5toh4.c
@@ -15,6 +15,7 @@
#include <errno.h>
#include <string.h>
#include <fcntl.h>
+#include <h5tools.h>
extern int PrintOptions_h5toh4(void);
extern char *BuildFilename(char *h5_filename, char *h4_extension);
@@ -32,17 +33,23 @@ extern herr_t convert_dataset_string(hid_t, char *, op_data_t *);
extern int32 h5type_to_h4type(hid_t);
extern hid_t h4type_to_memtype(int32);
-extern void init_table(void);
-extern void free_table(void);
-extern void dump_tables(void);
-extern herr_t H5findobj_once(hid_t , char *, void *);
-extern int get_table_idx(int, unsigned long *);
-extern int get_tableflag(int, int);
-extern int set_tableflag(int, int);
-extern char* get_objectname(int, int);
+extern void init_table(table_t **temp);
+extern void free_table(table_t **temp);
+extern void init_prefix(char **prefix, int length);
+extern void dump_tables(char* name, table_t* table);
+extern herr_t find_objs(hid_t , const char *, void *);
+extern int get_table_idx(table_t*, unsigned long *);
+extern int get_tableflag(table_t*, int);
+extern int set_tableflag(table_t*, int);
+extern char* get_objectname(table_t*, int);
typedef herr_t (*H5G_operator_t)(hid_t, const char*, void*);
+static int prefix_len = 1024;
+static char *prefix;
+static table_t *group_table, *dset_table, *type_table;
+
+
/*****************************************************************************
@@ -70,6 +77,7 @@ main(int argc, char **argv)
int status = 0;
int status2 = 0;
+
argc--;
argv++;
@@ -298,6 +306,11 @@ int h5toh4(char *h5_filename, char *h4_filename)
void *edata;
hid_t (*func)(void*);
+
+ find_objs_t *info = malloc(sizeof(find_objs_t));
+
+
+
/* open hdf5 file */
if ((fid = H5Fopen (h5_filename, H5F_ACC_RDONLY, plist)) <= 0) {
fprintf(stderr,"Error: Unable to open file %s\n",h5_filename);
@@ -333,14 +346,28 @@ int h5toh4(char *h5_filename, char *h4_filename)
}
/* allocate and initialize internal data structure */
- init_table();
+ init_table(&group_table);
+ init_table(&type_table);
+ init_table(&dset_table);
+ init_prefix(&prefix, prefix_len);
+
+ /* init the find_objs_t*/
+ info->threshold = 0;
+ info->prefix_len = prefix_len;
+ info->prefix = prefix;
+ info->group_table = group_table;
+ info->type_table = type_table;
+ info->dset_table = dset_table;
+ info->status = status;
+
+
/* Disable error reporting */
H5Eget_auto (&func, &edata);
H5Eset_auto (NULL, NULL);
/* find all objects one time */
- if ((status = H5Giterate(fid, "/", NULL, (H5G_operator_t)H5findobj_once, NULL)) != SUCCEED ) {
+ if ((status = H5Giterate(fid, "/", NULL, (H5G_operator_t)find_objs, (void*)info)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to iterate over all of the groups\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
}
@@ -407,7 +434,9 @@ int h5toh4(char *h5_filename, char *h4_filename)
}
done:
- free_table();
+ free_table(&group_table);
+ free_table(&dset_table);
+ free_table(&type_table);
return status;
@@ -493,13 +522,13 @@ H5G_stat_t statbuf;
} else {
- if ((idx = get_table_idx(H5G_GROUP, statbuf.objno)) < 0 ) {
+ if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found, %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
status = FAIL;
- } else if((flag = get_tableflag(H5G_GROUP,idx)) < 0 ) {
+ } else if((flag = get_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
@@ -516,7 +545,7 @@ H5G_stat_t statbuf;
} else { /* flag == FALSE */
/* this is now being converted */
- if ((status = set_tableflag(H5G_GROUP,idx)) < 0 ) {
+ if ((status = set_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: set_tableflag should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
@@ -1323,13 +1352,13 @@ convert_all (hid_t group, char *name, op_data_t *op_data)
if (statbuf.type==H5G_DATASET ) {
- if ((idx = get_table_idx(H5G_DATASET, statbuf.objno)) < 0 ) {
+ if ((idx = get_table_idx(dset_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
- } else if((flag = get_tableflag(H5G_DATASET,idx)) < 0 ) {
+ } else if((flag = get_tableflag(dset_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
@@ -1373,7 +1402,7 @@ convert_all (hid_t group, char *name, op_data_t *op_data)
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
}
- if(( status = set_tableflag(H5G_DATASET,idx)) != SUCCEED ) {
+ if(( status = set_tableflag(dset_table,idx)) != SUCCEED ) {
fprintf(stderr,"Error: set_tableflag() did not work for %s\n", name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
break;
@@ -1390,13 +1419,13 @@ convert_all (hid_t group, char *name, op_data_t *op_data)
} else if (statbuf.type==H5G_GROUP ) {
- if ((idx = get_table_idx(H5G_GROUP, statbuf.objno)) < 0 ) {
+ if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
- } else if((flag = get_tableflag(H5G_GROUP,idx)) < 0 ) {
+ } else if((flag = get_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
@@ -1440,13 +1469,13 @@ convert_all (hid_t group, char *name, op_data_t *op_data)
case H5G_GROUP:
- if ((idx = get_table_idx(H5G_GROUP, statbuf.objno)) < 0 ) {
+ if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
- } else if((flag = get_tableflag(H5G_GROUP,idx)) < 0 ) {
+ } else if((flag = get_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
@@ -1488,13 +1517,13 @@ convert_all (hid_t group, char *name, op_data_t *op_data)
case H5G_DATASET:
- if ((idx = get_table_idx(H5G_DATASET, statbuf.objno)) < 0 ) {
+ if ((idx = get_table_idx(dset_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
- } else if((flag = get_tableflag(H5G_DATASET,idx)) < 0 ) {
+ } else if((flag = get_tableflag(dset_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
@@ -1538,7 +1567,7 @@ convert_all (hid_t group, char *name, op_data_t *op_data)
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
}
- if(( status = set_tableflag(H5G_DATASET,idx)) != SUCCEED ) {
+ if(( status = set_tableflag(dset_table,idx)) != SUCCEED ) {
fprintf(stderr,"Error: set_tableflag() did not work for %s\n", name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
break;
@@ -1607,7 +1636,7 @@ convert_shared_dataset(hid_t did, int idx, op_data_t *op_data)
vgroup_id = op_data->vgroup_id;
- if ((dataset_name = get_objectname(H5G_DATASET, idx)) == NULL ) {
+ if ((dataset_name = get_objectname(dset_table, idx)) == NULL ) {
fprintf(stderr,"Error: get_objectname() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (status);
@@ -1770,7 +1799,7 @@ convert_shared_group (hid_t group, int idx, op_data_t *op_data) {
group2 = group;
hfile_id = op_data->hfile_id;
- if ((group_name = get_objectname(H5G_GROUP, idx)) == NULL ) {
+ if ((group_name = get_objectname(group_table, idx)) == NULL ) {
fprintf(stderr,"Error: get_objectname() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
status = FAIL;
generated by cgit v0.12 at 2024-12-27 05:37:22 (GMT)